RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12609
         (93 letters)



>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus
           thermophilus [TaxId: 274]}
          Length = 319

 Score = 61.5 bits (149), Expect = 2e-13
 Identities = 10/63 (15%), Positives = 19/63 (30%)

Query: 17  SALFEGAGNDPGDKTLEDKFFEHEVRLNVYAFLQQFHFGVFYSYLKLKEQECRNIVWISE 76
              F G       K LE       ++            G+  +Y+K +E E   +  ++ 
Sbjct: 242 GTPFSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLAR 301

Query: 77  CVA 79
              
Sbjct: 302 RAY 304


>d2o9xa1 a.184.1.1 (A:1-153) Reductase assembly protein AF0173
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 153

 Score = 23.4 bits (50), Expect = 5.0
 Identities = 13/84 (15%), Positives = 19/84 (22%), Gaps = 17/84 (20%)

Query: 14  QEYSALFEGAGNDPGDKTLEDKFFEHEVRLNVYAFLQQF----------------HFGVF 57
            EY++LF  +         +  F E  V         +                 H  V 
Sbjct: 49  VEYTSLFISSHPSVPCPPYQSYFEEGSVYGKASLRAAELYSKYGLNYVYESEPPDHISVE 108

Query: 58  YSYL-KLKEQECRNIVWISECVAQ 80
             +L    E       W  E    
Sbjct: 109 LEFLSMNPELLSDFRDWFLEFAKC 132


>d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572
          {Streptococcus pyogenes [TaxId: 1314]}
          Length = 77

 Score = 23.0 bits (49), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 28 GDKTLEDKFFEHEVRLNVYAFLQ 50
          GD+  +D F  +E +L+ Y FL 
Sbjct: 37 GDERAKDAFIRYESKLDAYEFLL 59


>d1s9ua_ a.184.1.1 (A:) Putative component of anaerobic
           dehydrogenases YnfI {Salmonella typhimurium [TaxId:
           90371]}
          Length = 207

 Score = 23.4 bits (50), Expect = 6.0
 Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 21/87 (24%)

Query: 14  QEYSALFEGAGNDP-----GDKTLEDKFFEHEVRLNVYAFLQQF-------------HFG 55
           Q +  LF G    P           +     +  L +  ++++              HFG
Sbjct: 73  QAWQRLFIGPYALPSPPWGSVWLDRESVLFGDSTLALRQWMRENGIQFEMQQNEPEDHFG 132

Query: 56  V---FYSYLKLKEQECRNIVWISECVA 79
                 ++L   ++       ++  + 
Sbjct: 133 SLLLLAAWLAENDRHHECEQLLAWHLF 159


>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein,
          BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 22.5 bits (47), Expect = 9.8
 Identities = 9/77 (11%), Positives = 23/77 (29%)

Query: 14 QEYSALFEGAGNDPGDKTLEDKFFEHEVRLNVYAFLQQFHFGVFYSYLKLKEQECRNIVW 73
           +   + +  G     +            + V           F++  ++ E       W
Sbjct: 21 DQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREW 80

Query: 74 ISECVAQKHRTKIDNYI 90
          + + VA     ++D Y+
Sbjct: 81 VLDSVALYQCQELDTYL 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.143    0.446 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 366,829
Number of extensions: 15022
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 6
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)