Query psy12613
Match_columns 76
No_of_seqs 105 out of 452
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 23:45:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3626|consensus 99.9 1.1E-25 2.5E-30 175.4 6.7 76 1-76 572-647 (735)
2 TIGR00805 oat sodium-independe 99.9 2.4E-25 5.1E-30 170.4 7.2 76 1-76 504-579 (633)
3 PF03137 OATP: Organic Anion T 99.9 3.5E-25 7.6E-30 167.6 0.0 76 1-76 437-512 (539)
4 KOG1330|consensus 97.2 0.00084 1.8E-08 51.6 5.6 65 10-74 344-408 (493)
5 TIGR00895 2A0115 benzoate tran 92.2 0.063 1.4E-06 37.1 0.9 49 27-76 350-398 (398)
6 TIGR00883 2A0106 metabolite-pr 91.2 0.048 1E-06 37.5 -0.6 47 29-75 326-372 (394)
7 TIGR00900 2A0121 H+ Antiporter 90.0 0.071 1.5E-06 36.4 -0.5 57 18-75 304-360 (365)
8 TIGR00880 2_A_01_02 Multidrug 87.6 0.21 4.6E-06 29.1 0.5 41 34-75 70-110 (141)
9 cd06174 MFS The Major Facilita 85.3 0.61 1.3E-05 31.3 1.8 55 20-75 270-324 (352)
10 TIGR00893 2A0114 d-galactonate 85.0 0.54 1.2E-05 32.0 1.4 41 34-75 330-370 (399)
11 TIGR00805 oat sodium-independe 83.6 1.2 2.6E-05 34.9 3.0 49 25-74 178-230 (633)
12 TIGR00891 2A0112 putative sial 83.6 0.94 2E-05 31.4 2.2 36 39-75 352-387 (405)
13 TIGR00889 2A0110 nucleoside tr 83.5 0.32 6.9E-06 35.5 -0.2 39 37-75 330-368 (418)
14 TIGR00901 2A0125 AmpG-related 82.8 0.49 1.1E-05 32.9 0.5 47 27-74 95-141 (356)
15 TIGR01299 synapt_SV2 synaptic 82.2 0.27 5.9E-06 39.5 -1.1 37 38-75 671-707 (742)
16 PRK11551 putative 3-hydroxyphe 80.8 0.76 1.6E-05 32.5 0.9 37 38-75 331-367 (406)
17 TIGR00879 SP MFS transporter, 80.4 2.3 5E-05 29.8 3.2 41 34-75 401-442 (481)
18 TIGR00890 2A0111 Oxalate/Forma 79.8 0.94 2E-05 30.9 1.1 36 39-75 319-354 (377)
19 TIGR00881 2A0104 phosphoglycer 79.7 1.3 2.8E-05 30.3 1.7 37 38-75 333-369 (379)
20 PF07690 MFS_1: Major Facilita 79.6 1.1 2.4E-05 30.4 1.4 59 16-75 86-144 (352)
21 PRK09556 uhpT sugar phosphate 79.4 0.88 1.9E-05 33.4 0.9 37 40-76 374-410 (467)
22 TIGR00898 2A0119 cation transp 78.2 1.1 2.5E-05 32.8 1.2 37 36-73 431-467 (505)
23 TIGR00711 efflux_EmrB drug res 76.7 0.87 1.9E-05 32.8 0.2 46 29-75 362-407 (485)
24 PRK11646 multidrug resistance 75.9 1.6 3.4E-05 31.5 1.4 40 35-75 317-356 (400)
25 PRK09952 shikimate transporter 75.4 1.3 2.9E-05 32.3 0.9 37 39-75 367-403 (438)
26 TIGR00892 2A0113 monocarboxyla 73.3 1.2 2.5E-05 32.9 0.1 38 37-75 355-392 (455)
27 TIGR02332 HpaX 4-hydroxyphenyl 73.1 4 8.7E-05 29.5 2.9 32 43-75 361-392 (412)
28 TIGR01272 gluP glucose/galacto 73.0 1.3 2.8E-05 31.2 0.3 61 14-75 9-69 (310)
29 TIGR00903 2A0129 major facilit 72.4 0.74 1.6E-05 33.3 -1.1 35 39-74 304-338 (368)
30 PRK06814 acylglycerophosphoeth 71.7 2.6 5.6E-05 34.4 1.8 59 16-75 109-167 (1140)
31 PRK11273 glpT sn-glycerol-3-ph 71.4 2 4.4E-05 31.4 1.0 36 40-75 372-407 (452)
32 PRK15075 citrate-proton sympor 70.5 1.9 4.1E-05 31.3 0.7 37 39-75 355-391 (434)
33 PRK14995 methyl viologen resis 70.4 1.7 3.6E-05 32.4 0.4 53 22-75 358-410 (495)
34 PRK08633 2-acyl-glycerophospho 69.6 3.2 6.9E-05 33.5 1.8 54 21-75 109-162 (1146)
35 PRK11273 glpT sn-glycerol-3-ph 69.3 3.2 7E-05 30.3 1.7 50 22-71 127-176 (452)
36 TIGR00900 2A0121 H+ Antiporter 68.9 1.8 3.9E-05 29.4 0.3 58 16-74 93-150 (365)
37 PRK12307 putative sialic acid 68.8 1.9 4.1E-05 30.7 0.4 35 40-75 346-380 (426)
38 PRK10489 enterobactin exporter 67.8 2.3 5E-05 30.4 0.7 37 38-75 335-371 (417)
39 PRK10489 enterobactin exporter 66.5 3.9 8.4E-05 29.3 1.6 48 27-75 122-169 (417)
40 PRK11663 regulatory protein Uh 65.9 2.7 5.8E-05 30.6 0.7 48 27-75 123-170 (434)
41 PRK10213 nepI ribonucleoside t 65.8 2 4.4E-05 30.9 0.1 39 35-74 128-166 (394)
42 PRK12382 putative transporter; 65.3 2.4 5.1E-05 30.0 0.3 37 38-75 325-361 (392)
43 KOG3498|consensus 64.8 4.6 0.0001 23.4 1.4 26 40-65 22-52 (67)
44 cd06174 MFS The Major Facilita 63.8 2.7 5.9E-05 28.1 0.4 44 30-74 102-145 (352)
45 PRK11902 ampG muropeptide tran 63.6 2.8 6.1E-05 29.9 0.4 55 16-71 95-149 (402)
46 TIGR00897 2A0118 polyol permea 62.4 2.8 6E-05 30.0 0.2 36 39-74 129-164 (402)
47 TIGR00711 efflux_EmrB drug res 61.2 2.9 6.2E-05 30.2 0.1 57 18-75 93-149 (485)
48 TIGR00897 2A0118 polyol permea 61.0 5.3 0.00011 28.6 1.5 34 41-75 340-373 (402)
49 TIGR00887 2A0109 phosphate:H+ 60.9 9.2 0.0002 28.4 2.7 35 40-75 417-451 (502)
50 PF03209 PUCC: PUCC protein; 59.8 3.4 7.5E-05 31.4 0.3 49 26-75 100-148 (403)
51 PRK11102 bicyclomycin/multidru 59.8 3.5 7.6E-05 28.7 0.4 50 24-74 88-137 (377)
52 PRK05122 major facilitator sup 59.4 3.6 7.8E-05 29.0 0.4 36 39-75 326-361 (399)
53 PRK05122 major facilitator sup 59.2 3.5 7.6E-05 29.1 0.3 36 37-73 134-169 (399)
54 TIGR00891 2A0112 putative sial 58.8 4.1 8.9E-05 28.2 0.6 41 33-74 118-158 (405)
55 PRK03699 putative transporter; 58.7 9.6 0.00021 27.1 2.5 55 18-73 98-152 (394)
56 PF07690 MFS_1: Major Facilita 58.6 3.9 8.4E-05 27.7 0.4 48 21-69 305-352 (352)
57 TIGR00893 2A0114 d-galactonate 57.8 2.7 5.9E-05 28.5 -0.5 56 18-74 85-140 (399)
58 PRK11646 multidrug resistance 57.7 4.1 8.9E-05 29.4 0.4 41 34-75 118-158 (400)
59 TIGR00712 glpT glycerol-3-phos 55.5 10 0.00022 27.5 2.1 36 31-66 134-169 (438)
60 PRK06814 acylglycerophosphoeth 54.9 4.8 0.0001 32.8 0.4 52 22-74 341-392 (1140)
61 PRK03893 putative sialic acid 53.8 3.9 8.5E-05 29.7 -0.2 40 35-75 128-167 (496)
62 TIGR02718 sider_RhtX_FptX side 53.7 6.3 0.00014 27.9 0.8 41 34-75 322-363 (390)
63 TIGR00712 glpT glycerol-3-phos 53.1 2.8 6.2E-05 30.4 -1.0 35 41-75 371-405 (438)
64 TIGR00902 2A0127 phenyl propri 52.3 7.3 0.00016 27.7 1.0 56 19-75 297-352 (382)
65 PRK03545 putative arabinose tr 49.6 5.5 0.00012 28.2 0.0 36 37-73 119-154 (390)
66 TIGR00788 fbt folate/biopterin 49.5 6.4 0.00014 29.4 0.3 52 21-73 357-408 (468)
67 PRK10406 alpha-ketoglutarate t 49.3 9.8 0.00021 27.6 1.3 33 41-73 362-394 (432)
68 PRK09874 drug efflux system pr 48.3 5.6 0.00012 27.9 -0.1 36 39-75 335-370 (408)
69 PRK11195 lysophospholipid tran 47.5 3.5 7.6E-05 29.7 -1.3 38 37-75 110-147 (393)
70 PRK10054 putative transporter; 47.4 8.7 0.00019 27.6 0.8 35 40-75 121-155 (395)
71 PRK08633 2-acyl-glycerophospho 47.4 13 0.00028 30.1 1.8 39 25-63 332-370 (1146)
72 TIGR00901 2A0125 AmpG-related 47.0 12 0.00027 25.9 1.4 40 22-61 316-355 (356)
73 PRK10504 putative transporter; 46.7 8 0.00017 28.1 0.5 41 34-75 372-412 (471)
74 PRK03893 putative sialic acid 46.5 5.2 0.00011 29.1 -0.5 34 41-75 392-425 (496)
75 TIGR00885 fucP L-fucose:H+ sym 46.4 7.3 0.00016 28.4 0.2 58 16-74 95-152 (410)
76 TIGR00895 2A0115 benzoate tran 46.3 4.3 9.4E-05 27.9 -0.9 40 34-74 124-163 (398)
77 TIGR00898 2A0119 cation transp 46.1 18 0.00039 26.5 2.3 55 16-71 181-235 (505)
78 TIGR00710 efflux_Bcr_CflA drug 45.4 6.5 0.00014 27.2 -0.2 40 34-74 112-151 (385)
79 PRK12382 putative transporter; 44.0 11 0.00024 26.6 0.8 34 39-73 136-169 (392)
80 PRK10642 proline/glycine betai 41.5 18 0.00039 26.8 1.6 32 43-75 370-401 (490)
81 TIGR00894 2A0114euk Na(+)-depe 41.5 11 0.00023 27.5 0.4 38 37-75 153-190 (465)
82 PRK03545 putative arabinose tr 41.4 15 0.00032 26.0 1.2 34 41-75 319-352 (390)
83 PRK11010 ampG muropeptide tran 41.0 11 0.00024 28.2 0.5 54 16-70 108-161 (491)
84 COG3833 MalG ABC-type maltose 40.5 16 0.00035 26.6 1.3 38 21-60 202-239 (282)
85 PRK11195 lysophospholipid tran 40.4 21 0.00045 25.7 1.8 48 25-73 303-351 (393)
86 PF02487 CLN3: CLN3 protein; 38.9 14 0.00031 27.9 0.8 40 20-59 340-379 (402)
87 TIGR01301 GPH_sucrose GPH fami 38.9 29 0.00063 26.6 2.4 52 18-70 117-170 (477)
88 PRK11663 regulatory protein Uh 37.6 10 0.00023 27.5 -0.1 34 41-75 363-396 (434)
89 PRK09528 lacY galactoside perm 37.5 8.6 0.00019 27.6 -0.6 35 41-75 341-375 (420)
90 PF13106 DUF3961: Domain of un 36.1 26 0.00057 18.3 1.3 24 6-30 11-34 (40)
91 KOG2615|consensus 35.8 7.1 0.00015 30.2 -1.3 37 38-75 143-179 (451)
92 PRK14995 methyl viologen resis 35.6 11 0.00023 28.1 -0.4 33 42-75 121-154 (495)
93 TIGR00899 2A0120 sugar efflux 35.4 14 0.0003 25.5 0.2 33 42-75 314-346 (375)
94 PRK10054 putative transporter; 35.1 18 0.00039 26.0 0.8 34 40-75 323-356 (395)
95 PF03825 Nuc_H_symport: Nucleo 34.3 23 0.0005 26.2 1.3 45 31-75 317-361 (400)
96 KOG2615|consensus 33.0 27 0.00059 27.1 1.5 52 22-74 359-410 (451)
97 PRK11128 putative 3-phenylprop 32.8 17 0.00037 25.7 0.4 42 34-75 311-352 (382)
98 PRK11551 putative 3-hydroxyphe 32.7 15 0.00032 25.9 0.0 36 35-71 123-158 (406)
99 PRK10473 multidrug efflux syst 31.1 15 0.00032 25.9 -0.2 38 36-74 112-149 (392)
100 TIGR02332 HpaX 4-hydroxyphenyl 29.9 13 0.00027 27.0 -0.7 35 38-73 119-153 (412)
101 PRK03633 putative MFS family t 29.7 22 0.00049 25.0 0.5 35 39-74 118-152 (381)
102 PRK10504 putative transporter; 29.7 14 0.00031 26.8 -0.5 37 38-75 121-157 (471)
103 PF11700 ATG22: Vacuole efflux 29.7 28 0.0006 26.6 1.0 42 33-75 398-439 (477)
104 PF05977 MFS_3: Transmembrane 29.1 25 0.00054 27.2 0.7 42 33-75 120-162 (524)
105 PF07127 Nodulin_late: Late no 26.6 94 0.002 16.6 2.6 30 16-49 7-36 (54)
106 TIGR00887 2A0109 phosphate:H+ 25.7 48 0.001 24.6 1.7 44 18-61 118-161 (502)
107 PRK11043 putative transporter; 25.5 64 0.0014 22.7 2.2 33 40-74 321-353 (401)
108 PRK15462 dipeptide/tripeptide 25.5 28 0.00061 26.8 0.5 34 41-75 126-161 (493)
109 KOG0255|consensus 24.6 67 0.0014 23.8 2.3 44 12-55 168-211 (521)
110 PTZ00478 Sec superfamily; Prov 24.5 52 0.0011 19.7 1.4 30 37-66 31-65 (81)
111 PRK10207 dipeptide/tripeptide 24.3 34 0.00075 25.8 0.7 43 18-60 382-424 (489)
112 TIGR00792 gph sugar (Glycoside 23.6 45 0.00097 23.7 1.2 29 46-75 349-377 (437)
113 PRK10091 MFS transport protein 23.2 31 0.00068 24.4 0.3 32 39-71 115-146 (382)
114 PF14325 DUF4383: Domain of un 22.8 89 0.0019 19.8 2.3 21 50-70 5-25 (125)
115 PRK10077 xylE D-xylose transpo 22.0 82 0.0018 22.7 2.3 27 38-64 387-413 (479)
116 PF08189 Meleagrin: Meleagrin/ 21.9 36 0.00078 17.6 0.3 11 3-13 8-18 (39)
117 TIGR00894 2A0114euk Na(+)-depe 21.8 1.1E+02 0.0025 22.1 3.0 29 46-75 391-419 (465)
118 PF07849 DUF1641: Protein of u 21.7 32 0.00069 17.8 0.1 29 36-64 12-40 (42)
119 KOG3626|consensus 21.2 1.6E+02 0.0035 24.3 3.9 48 16-64 234-285 (735)
120 TIGR00924 yjdL_sub1_fam amino 21.0 38 0.00083 25.3 0.4 33 42-75 129-164 (475)
121 PRK15011 sugar efflux transpor 20.5 54 0.0012 23.3 1.1 30 45-75 334-363 (393)
No 1
>KOG3626|consensus
Probab=99.92 E-value=1.1e-25 Score=175.38 Aligned_cols=76 Identities=39% Similarity=0.792 Sum_probs=73.3
Q ss_pred CCcCCCCCCCcchhHHHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhccC
Q psy12613 1 MATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 76 (76)
Q Consensus 1 ~a~~G~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~I 76 (76)
+|++|.|++||.++++.|++++++.+|+++++++|.++++||||++||||+|||+||+++|+||+||+||+||++|
T Consensus 572 ~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~I 647 (735)
T KOG3626|consen 572 SAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVI 647 (735)
T ss_pred eeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhH
Confidence 4789999999888889999999999999999999999999999999999999999999999999999999999986
No 2
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.92 E-value=2.4e-25 Score=170.40 Aligned_cols=76 Identities=30% Similarity=0.607 Sum_probs=72.8
Q ss_pred CCcCCCCCCCcchhHHHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhccC
Q psy12613 1 MATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 76 (76)
Q Consensus 1 ~a~~G~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~I 76 (76)
+|++|+|+++|++++++|++++++..++++++.+|.++++||||+|||||+|+|+|++++|++|+|||||+||++|
T Consensus 504 ~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~i 579 (633)
T TIGR00805 504 SAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLI 579 (633)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhh
Confidence 3788999999988788999999999999999999999999999999999999999999999999999999999986
No 3
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.90 E-value=3.5e-25 Score=167.64 Aligned_cols=76 Identities=41% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcCCCCCCCcchhHHHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhccC
Q psy12613 1 MATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 76 (76)
Q Consensus 1 ~a~~G~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~I 76 (76)
+|++|.|+++|.+++++|++++++..+++++..+|.++++||||++||||+|+|+|++++|++|+|||||+||++|
T Consensus 437 ~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~ii 512 (539)
T PF03137_consen 437 SATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAII 512 (539)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHH
Confidence 3678999999777789999999999999999999999999999999999999999999999999999999999986
No 4
>KOG1330|consensus
Probab=97.22 E-value=0.00084 Score=51.58 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=57.7
Q ss_pred CcchhHHHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 10 DCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 10 ~C~~~~~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
++.+.++..+++++++..+...+..++.-+.+-+|+|+.|+.|..++.++.+++|.-++|-+.|.
T Consensus 344 ~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGi 408 (493)
T KOG1330|consen 344 FTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGI 408 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehh
Confidence 45566777888888889999999999999999999999999999999999999999999966654
No 5
>TIGR00895 2A0115 benzoate transport.
Probab=92.22 E-value=0.063 Score=37.08 Aligned_cols=49 Identities=29% Similarity=0.443 Sum_probs=37.4
Q ss_pred HHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhccC
Q psy12613 27 FFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 76 (76)
Q Consensus 27 ~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~I 76 (76)
+..+...........+.+|+++|+.++|+...+.+ +|..-||.+.|+++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~g~~~~G~ll 398 (398)
T TIGR00895 350 FFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGR-LGAIIGPILAGYLL 398 (398)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-HHHHHHHHhHHhcC
Confidence 33334444556677888999999999999988766 66778999999874
No 6
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=91.19 E-value=0.048 Score=37.53 Aligned_cols=47 Identities=13% Similarity=-0.056 Sum_probs=36.0
Q ss_pred HhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 29 SATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 29 ~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
......+.....-+.+|+|+|+.+.|+...+....|..-+|.+.|++
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l 372 (394)
T TIGR00883 326 GGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAAL 372 (394)
T ss_pred HHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHH
Confidence 33334455555667789999999999887788888999999998865
No 7
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=90.03 E-value=0.071 Score=36.37 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 18 FIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 18 f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+.+..++..+.......+......+.+|+|+|+.+.|+...+.++ |..-+|.+.|++
T Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~g~~~~g~l 360 (365)
T TIGR00900 304 FLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHA-AWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 333333444444444445556677889999999999999998775 566788888865
No 8
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=87.65 E-value=0.21 Score=29.10 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=29.0
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 34 AGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 34 ~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
........+.+++++|+.+.|+.....+ +|..-+|.+.|.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 110 (141)
T TIGR00880 70 VAGAALIADIYPPEERGVALGLMSAGIA-LGPLLGPPLGGVL 110 (141)
T ss_pred HhHHHHHHHHCChhhhhHHHHHHHHhHH-HHHHHhHHhHHHH
Confidence 3344556688899999999999887654 5566667666543
No 9
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=85.31 E-value=0.61 Score=31.33 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 20 FILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 20 ~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
...++..+......+.......+.+|+|+|+.++|+.....+ .|..-+|.+.|.+
T Consensus 270 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~i~g~l 324 (352)
T cd06174 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGS-LGGALGPLLAGLL 324 (352)
T ss_pred HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 334444444555555566777888999999999999987655 4566688887764
No 10
>TIGR00893 2A0114 d-galactonate transporter.
Probab=84.99 E-value=0.54 Score=32.00 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=32.5
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 34 AGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 34 ~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.+.....-+.+|+|+|+.+.|+...+. -+|..-+|.+.|++
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~i~g~l 370 (399)
T TIGR00893 330 AIGWALISDNAPGNIAGLTGGLINSLG-NLGGIVGPIVIGAI 370 (399)
T ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHH-HHhhhhhhHHhhhh
Confidence 344456667889999999999999887 46778899988875
No 11
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=83.64 E-value=1.2 Score=34.87 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=30.9
Q ss_pred HHHHHhcccccc----eeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 25 LNFFSATGRAGN----TIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 25 ~~~~~~~~~~p~----~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
.-++.+++..|. ...+=..+++++|+.++|+... ...+|..-||++-|.
T Consensus 178 ~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~-~~~iG~~lG~llgg~ 230 (633)
T TIGR00805 178 SQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILES-IAVFGPAFGYLLGSF 230 (633)
T ss_pred HHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHH-HHHhhhHHHHHHHHH
Confidence 444555555443 3455566889999999998665 355566666665443
No 12
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=83.64 E-value=0.94 Score=31.43 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=28.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 39 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 39 ~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
..-+.+|+++|+.+.|+...+.+ +|...||.+.|++
T Consensus 352 ~~~~~~~~~~~~~~~g~~~~~~~-~g~~~g~~~~g~l 387 (405)
T TIGR00891 352 HLGEYFPTDQRAAGLGFTYQLGN-LGGALAPIIGALL 387 (405)
T ss_pred HHhhhCCcchhHHHhhHHHHHHH-HHHHHHHHHHHHH
Confidence 34467899999999999888775 4667799998875
No 13
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=83.47 E-value=0.32 Score=35.50 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=32.4
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 37 TIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 37 ~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
...+-+..|+++|+.++|+......-+|.+-||++.|++
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l 368 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVM 368 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445567889999999999998777788888899999875
No 14
>TIGR00901 2A0125 AmpG-related permease.
Probab=82.84 E-value=0.49 Score=32.94 Aligned_cols=47 Identities=17% Similarity=0.043 Sum_probs=31.3
Q ss_pred HHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 27 FFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 27 ~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
+......++.....-+.+++|+|+.+.|++..... +|.+-+|.+.|.
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~l~~~ 141 (356)
T TIGR00901 95 FFSATQDIALDAWRLEILSDEELGYGSTIYIVGYR-AGMLLSGSLALV 141 (356)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33333334444456688899999999999877655 466666666554
No 15
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=82.17 E-value=0.27 Score=39.46 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=30.4
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 38 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 38 ~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
..+-...|.++|+.++|+.....| +|.+.||.+.|++
T Consensus 671 a~~aEl~Pt~~Rgta~Gi~~~~~r-lGaiigp~i~g~L 707 (742)
T TIGR01299 671 VLTVELYPSDKRATAFGFLNALCK-AAAVLGILIFGSF 707 (742)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344566899999999999999888 6788899888764
No 16
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=80.85 E-value=0.76 Score=32.52 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=29.4
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 38 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 38 ~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
...-+.+|+++|+.++|+...+.++ |..-||.+.|++
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l 367 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRL-GSMAGPLLAGQL 367 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhH-HHHHHhhhHhhh
Confidence 3445678999999999999988765 566799998875
No 17
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=80.36 E-value=2.3 Score=29.82 Aligned_cols=41 Identities=15% Similarity=0.043 Sum_probs=29.7
Q ss_pred cccee-eEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 34 AGNTI-IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 34 ~p~~~-~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.|... ..-..+++++|+.+.|+.....+ +|.+-+|.++|++
T Consensus 401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-lg~~i~~~~~~~~ 442 (481)
T TIGR00879 401 GPVPWVIVSEIFPLSLRPKGISIAVAANW-LANFIVGFLFPTM 442 (481)
T ss_pred cCeehhhhhccCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34443 33677888999999999987665 5677788877754
No 18
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=79.77 E-value=0.94 Score=30.89 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 39 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 39 ~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
..-+.+++|+|+.+.|+...... +|..-+|.+.|.+
T Consensus 319 ~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l 354 (377)
T TIGR00890 319 LVSDIFGPANSAANYGFLYTAKA-VAGIFGGLIASHA 354 (377)
T ss_pred HHHHHhhhhhhhhHhHHHHHHHH-HHHHHHHHHHHHH
Confidence 34467899999999999987765 6778888888764
No 19
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=79.75 E-value=1.3 Score=30.25 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=28.5
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 38 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 38 ~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
....+.+|+++|+.+.|+.....++ |..-+|.+.|.+
T Consensus 333 ~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l 369 (379)
T TIGR00881 333 VIASELAPKKAAGTAAGFVGFFAYL-GGILAGLPLGYL 369 (379)
T ss_pred HHHHHhcCcchhHHHHHHHHHhhhh-hhhhhhhhHHHH
Confidence 3456778999999999999887654 455788888765
No 20
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=79.62 E-value=1.1 Score=30.41 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 16 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 16 ~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+.+++..++..+..+.........+-+.+++|+|+.++|+..... -+|.+-||++-|.+
T Consensus 86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~l~~~l 144 (352)
T PF07690_consen 86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGF-SLGSILGPLLGGFL 144 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHH-HHHHHHHHHHHHHC
T ss_pred HHHhhhccccccccccccccccccccccchhhhhhhccccccchh-hhhhhcccchhhhh
Confidence 344455555555555555556667788899999999999988754 44667777776654
No 21
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=79.36 E-value=0.88 Score=33.39 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=32.4
Q ss_pred EEeecCCCCchHHHHHHHHHHHHhccCchhhhhhccC
Q psy12613 40 QFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGALL 76 (76)
Q Consensus 40 ~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~I 76 (76)
....+|+|+++.+.|+...+..+.|..-+|.++|+++
T Consensus 374 ~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~ 410 (467)
T PRK09556 374 AVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIA 410 (467)
T ss_pred HHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHh
Confidence 3478899999999999999999888889999999863
No 22
>TIGR00898 2A0119 cation transport protein.
Probab=78.22 E-value=1.1 Score=32.76 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=29.5
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhh
Q psy12613 36 NTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG 73 (76)
Q Consensus 36 ~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG 73 (76)
.....-...|++.|+.++|+...+.| +|.+-+|.+.|
T Consensus 431 ~~~~~~e~~p~~~r~~~~g~~~~~~~-ig~~i~p~i~~ 467 (505)
T TIGR00898 431 VYLYTAELYPTVVRNLGVGVCSTMAR-VGSIISPFLVY 467 (505)
T ss_pred HHHHhcccccHHHHhhhHhHHHHHHH-HHHHHHhHHHH
Confidence 34455677899999999999998877 57788888776
No 23
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=76.74 E-value=0.87 Score=32.84 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=34.0
Q ss_pred HhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 29 SATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 29 ~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.+....|........+++|+|+.+.|+.... |-+|..-||.+.|.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 362 MGCFFMPLTTIALSGLPPHKIARGSSLSNFT-RQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHHHHHhcCCHHHHhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3333445556667788999999999998876 567777788877754
No 24
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=75.94 E-value=1.6 Score=31.52 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=30.6
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 35 GNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 35 p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+......+.+|+++|+.++|+... ..-+|..-||.+.|.+
T Consensus 317 ~~~~~~~~~~p~~~~g~~~g~~~~-~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 317 ARETLSASLADARARGSYMGFSRL-GLALGGAIGYIGGGWL 356 (400)
T ss_pred cHHHHHHhcCCcccchhhhhHHHH-HHHHHHHhcccchHHH
Confidence 334556688999999999998766 4566788888888764
No 25
>PRK09952 shikimate transporter; Provisional
Probab=75.37 E-value=1.3 Score=32.30 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=30.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 39 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 39 ~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
..-+.+|.+.|+.+.|+...+.+.+|+.-+|.+.|++
T Consensus 367 ~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l 403 (438)
T PRK09952 367 MFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAAL 403 (438)
T ss_pred HHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788899999999988888888888899988875
No 26
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=73.35 E-value=1.2 Score=32.90 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=30.0
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 37 TIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 37 ~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.....+.+++++++.+.|+..... -+|.+-||.+.|.+
T Consensus 355 ~~~~~~~~~~~~~g~~~g~~~~~~-~lg~~igp~i~G~l 392 (455)
T TIGR00892 355 FEVLMDLVGAQRFSSAVGLVTIVE-CCAVLIGPPLAGRL 392 (455)
T ss_pred HHHHHHHhhHHHHhhHHhHHHHHH-HHHHHccccceeee
Confidence 344556789999999999988775 55888899988865
No 27
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=73.06 E-value=4 Score=29.54 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=27.6
Q ss_pred ecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 43 CVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 43 ~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
..++|+|+.+.|+...+.++ |.+-+|.++|.+
T Consensus 361 ~~~~~~~~~a~g~~~~~~~~-g~~~~p~~~g~i 392 (412)
T TIGR02332 361 SISLQARAIAIAVINATGNI-GSALSPFLIGIL 392 (412)
T ss_pred ccchHHHHHHHHHHHHhhhh-hhhhhhhhcccc
Confidence 47889999999999998884 888999988875
No 28
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=73.03 E-value=1.3 Score=31.25 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 14 HFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 14 ~~~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.++.|++.+++...-.++.++-.+-..-.+-++|+++..+++.+.+ .-+|.+-||++.+.+
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~-~~~G~~~gP~i~~~~ 69 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAF-NKLGTTVAPLFGGSL 69 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHH-hhhHHHHHHHHHHHH
Confidence 4677888777777666666666555555555788889999999987 566788999988865
No 29
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=72.45 E-value=0.74 Score=33.26 Aligned_cols=35 Identities=6% Similarity=-0.134 Sum_probs=27.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 39 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 39 ~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
..-.+.|+|.|+.+.|+...+.|+. ++-+|++.|.
T Consensus 304 ~~~~~~p~~~rgt~~G~~~~~g~~~-~~~~~~~~~~ 338 (368)
T TIGR00903 304 WIGKFCDKELHGKAAGAIGFTSRAI-SVALALAAML 338 (368)
T ss_pred HHHHhcchhhcCcccchhhHHHHHH-HHHHHHHHHH
Confidence 4458889999999999999999996 4445555554
No 30
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=71.72 E-value=2.6 Score=34.36 Aligned_cols=59 Identities=20% Similarity=0.057 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 16 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 16 ~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+.+++..++..+..+........++-+.+++++|+.|+|+..+...+ |.+-||++-|++
T Consensus 109 ~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~i-g~~igp~l~g~l 167 (1140)
T PRK06814 109 PLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFI-AILLGTIIGGLA 167 (1140)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHH-HHHHHHHHHHHH
Confidence 33444444444444444344455666778899999999998876654 677777777754
No 31
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=71.38 E-value=2 Score=31.36 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=28.5
Q ss_pred EEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 40 QFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 40 ~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
..+.+|+++|+.+.|+...+..+-|.+=+|.+.|++
T Consensus 372 ~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l 407 (452)
T PRK11273 372 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 407 (452)
T ss_pred HHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 347889999999999998887766566578888764
No 32
>PRK15075 citrate-proton symporter; Provisional
Probab=70.48 E-value=1.9 Score=31.28 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=29.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 39 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 39 ~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
..-..+|+++|+.+.|+...+.+.+++.-+|.+.|++
T Consensus 355 ~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 355 ALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 3456789999999999987788887555588888764
No 33
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=70.38 E-value=1.7 Score=32.37 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=37.8
Q ss_pred HHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 22 LCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.++..+..++...|........+|+|+++.+.|+..+ .|-+|..-|+.+.|++
T Consensus 358 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 358 MALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETM-AYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3333444455556677778889999999999888776 4666777788777764
No 34
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=69.58 E-value=3.2 Score=33.52 Aligned_cols=54 Identities=26% Similarity=0.249 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 21 ILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
..++..+..+.........+-+.+++++|+.++|+...... +|.+-||++.|++
T Consensus 109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-ig~~lg~~l~~~l 162 (1146)
T PRK08633 109 VTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTI-VAILAGTALFSFL 162 (1146)
T ss_pred HHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHH-HHHHHHHHHHHHH
Confidence 33333444444444445567778899999999999877654 4666666665543
No 35
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=69.35 E-value=3.2 Score=30.29 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=31.4
Q ss_pred HHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhh
Q psy12613 22 LCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPII 71 (76)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPii 71 (76)
.++..+..+....+......+..++|+|+.++|+......+-+.+-+|++
T Consensus 127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 176 (452)
T PRK11273 127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF 176 (452)
T ss_pred HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33334444444444445556778899999999997666665555655653
No 36
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=68.90 E-value=1.8 Score=29.44 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 16 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 16 ~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
+.+.+..++..+..+....+.....-+.+++|+|+.+.|+..... -+|.+-||.+-|.
T Consensus 93 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~l~~~ 150 (365)
T TIGR00900 93 WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVR-SLFYIVGPGIGGL 150 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHH-HHHHHHHHHHHHH
Confidence 334444444444444444445556667888999999999887754 3445666665544
No 37
>PRK12307 putative sialic acid transporter; Provisional
Probab=68.82 E-value=1.9 Score=30.68 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=29.3
Q ss_pred EEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 40 QFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 40 ~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.-+.+|+++|+.++|+...+.++ |.+.||++.|++
T Consensus 346 ~~~~~p~~~~g~~~g~~~~~~~~-~~~~gp~~~g~l 380 (426)
T PRK12307 346 LYDYFPLEVRGLGTGLIYNLAAT-SGTFNSMAATWL 380 (426)
T ss_pred HHHhCcHHHHhhhhhHHHHHHhH-HHHHHHHHHHHH
Confidence 34678889999999999888877 678899998875
No 38
>PRK10489 enterobactin exporter EntS; Provisional
Probab=67.85 E-value=2.3 Score=30.43 Aligned_cols=37 Identities=16% Similarity=0.022 Sum_probs=28.4
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 38 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 38 ~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
...-+.+|+|+|+.+.|+..... -+|..-||.+.|++
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~-~~g~~~g~~l~G~l 371 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQN-VTGDAIGAALLGGL 371 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHH-hhhHhHHHHHHHHH
Confidence 34456778888999999987644 46888888888865
No 39
>PRK10489 enterobactin exporter EntS; Provisional
Probab=66.52 E-value=3.9 Score=29.26 Aligned_cols=48 Identities=23% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 27 FFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 27 ~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+..+....+.....-+.+++|+|..+.|+.... .-+|.+-||.+.|.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~l~g~l 169 (417)
T PRK10489 122 FFGSLGVTALLAATPALVGRENLMQAGAITMLT-VRLGSVISPALGGLL 169 (417)
T ss_pred HHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHH-HhHHHHhHHHHHHHH
Confidence 333444444555667888999999998887653 445666677766643
No 40
>PRK11663 regulatory protein UhpC; Provisional
Probab=65.89 E-value=2.7 Score=30.57 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=31.7
Q ss_pred HHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 27 FFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 27 ~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+..+....+...+.-+..++++|+.++|+..... -+|.+-+|.+.|++
T Consensus 123 ~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~-~~g~~~~~~~~~~l 170 (434)
T PRK11663 123 FFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAH-NVGGALIPLVVGAI 170 (434)
T ss_pred HHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3344444444455566778899999999988765 45666677766643
No 41
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=65.80 E-value=2 Score=30.88 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=26.6
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 35 GNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 35 p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
......-+.+++|+|+.++|+.+.... +|.+-||++-|.
T Consensus 128 ~~~~~i~~~~~~~~~~~a~~~~~~~~~-~g~~ig~~l~~~ 166 (394)
T PRK10213 128 MSASLTMRLVPPRTVPKALSVIFGAVS-IALVIAAPLGSF 166 (394)
T ss_pred HHHHHHHHHcCHhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 334445688899999999999887543 455556665543
No 42
>PRK12382 putative transporter; Provisional
Probab=65.28 E-value=2.4 Score=29.98 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=28.2
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 38 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 38 ~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
....+..++|+|+.+.|+...... +|..-||.+.|++
T Consensus 325 ~~~~~~~~~~~~g~~~g~~~~~~~-~g~~ig~~~~g~l 361 (392)
T PRK12382 325 VEVVKRVPSQVRGTALGGYAAFQD-IAYGVSGPLAGML 361 (392)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344567889999999999887755 4677788888764
No 43
>KOG3498|consensus
Probab=64.82 E-value=4.6 Score=23.41 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=17.6
Q ss_pred EEeecCCCCch-----HHHHHHHHHHHHhcc
Q psy12613 40 QFRCVSPEDKS-----LSIGITEALGCGLAF 65 (76)
Q Consensus 40 ~LR~V~~~~ks-----~alG~~~~~~rllg~ 65 (76)
.=||+.||.|- .|.|+...++.++|+
T Consensus 22 ~krC~KPdrKEf~ki~~~~aiGf~~mG~iGf 52 (67)
T KOG3498|consen 22 VKRCTKPDRKEFTKIAKATAIGFVIMGFIGF 52 (67)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999874 455666666666654
No 44
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=63.79 E-value=2.7 Score=28.14 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=29.1
Q ss_pred hcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 30 ATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 30 ~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
+....+.....-+..++|+|+.+.|+..... -+|.+-+|.+.|.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 145 (352)
T cd06174 102 GALYPAAAALIAEWFPPKERGRALGLFSAGF-GLGALLGPLLGGL 145 (352)
T ss_pred ccccHhHHHHHHHhCCccchhhhhhHHHHHH-HHHHHHHHHHHHH
Confidence 3333444455566778889999999987655 4466667776654
No 45
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=63.61 E-value=2.8 Score=29.94 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhh
Q psy12613 16 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPII 71 (76)
Q Consensus 16 ~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPii 71 (76)
+.+....++..++.....++......+.+++|||+.+.+++..-. -+|.+-++.+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~-~~g~i~g~~l 149 (402)
T PRK11902 95 WPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGY-RLAMLVSGGL 149 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHH-HHHHHHHhHH
Confidence 334444344445555544555566778899999999988887543 3344444443
No 46
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=62.40 E-value=2.8 Score=30.05 Aligned_cols=36 Identities=11% Similarity=-0.135 Sum_probs=23.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 39 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 39 ~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
...+.+++|+|+.+.|+......+=..+-||++-|.
T Consensus 129 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 129 WVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455778999999999998776544222345555443
No 47
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=61.22 E-value=2.9 Score=30.16 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 18 FIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 18 f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+++..++..+..+...+.......+.+++|+|+.+.|+..... .+|..-||.+.|++
T Consensus 93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~~g~~~~~~l 149 (485)
T TIGR00711 93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTV-LVAPALGPTLGGWI 149 (485)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHhhhhhccHhHh
Confidence 3333333333334333444556678889999999999876654 45566677766543
No 48
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=61.03 E-value=5.3 Score=28.59 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=26.0
Q ss_pred EeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 41 FRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 41 LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+..++||+|+.+.|+.....++ |.+-+|.+.|.+
T Consensus 340 ~~~~~~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l 373 (402)
T TIGR00897 340 FPTLAPKHKGAAMSVLNLSAGL-SAFLAPAIAVLF 373 (402)
T ss_pred HHhhCcchhHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3456788999999998877755 456699888865
No 49
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=60.86 E-value=9.2 Score=28.38 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=28.2
Q ss_pred EEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 40 QFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 40 ~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.--..|++.|+.++|+...+.++ |++.+|.++|.+
T Consensus 417 ~~E~~p~~~R~~~~g~~~~~~~~-~~~~~~~~~~~l 451 (502)
T TIGR00887 417 PGEVFPTRYRSTAHGISAASGKA-GAIIGQFGFLYL 451 (502)
T ss_pred hhccCchhHHHHHHHHHHHHhhh-HHHHHHHHhhhh
Confidence 34567788899999999998886 677788888764
No 50
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=59.84 E-value=3.4 Score=31.35 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=38.5
Q ss_pred HHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 26 NFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 26 ~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
-.-...++||...+.--.++||+|+-+.++.|++ -+.|.|-+.+++|.+
T Consensus 100 G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~M-li~G~iv~ai~~g~l 148 (403)
T PF03209_consen 100 GLGVHASGTSFLALLADLAPEERRPRVVAIVWVM-LIVGIIVSAIVFGRL 148 (403)
T ss_pred HhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3344556777777777778899999999999985 468888888888865
No 51
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=59.80 E-value=3.5 Score=28.68 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=30.5
Q ss_pred HHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 24 LLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 24 ~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
+..+..+....+.....-+..++|+|+.++|+...... +|.+-+|++.|.
T Consensus 88 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 137 (377)
T PRK11102 88 LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMT-IAPLLAPIIGGW 137 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33333333333334445556788899999999887654 456667766554
No 52
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=59.44 E-value=3.6 Score=29.04 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=25.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 39 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 39 ~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
...+.+++|+|+.+.|+......+ |..-+|.+.|++
T Consensus 326 ~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l 361 (399)
T PRK05122 326 EAVKRVPPQNRGAALGAYSVFLDL-SLGITGPLAGLV 361 (399)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 445788999999999998776655 334455566653
No 53
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=59.21 E-value=3.5 Score=29.12 Aligned_cols=36 Identities=11% Similarity=-0.078 Sum_probs=23.5
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhh
Q psy12613 37 TIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG 73 (76)
Q Consensus 37 ~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG 73 (76)
.....+.+++|+|+.+.|+...... .|.+-||.+-|
T Consensus 134 ~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~l~~ 169 (399)
T PRK05122 134 ILWGIGRVGALHTGRVISWNGIATY-GALAIGAPLGV 169 (399)
T ss_pred HHHHHhhcChhhhccchhhhhhhhh-HHHHHHHHHHH
Confidence 3445688899999999988665433 34555555444
No 54
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=58.83 E-value=4.1 Score=28.22 Aligned_cols=41 Identities=5% Similarity=0.022 Sum_probs=26.9
Q ss_pred cccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 33 RAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 33 ~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
.........+.+++|+|+.+.|+..... .+|.+-+|.+.+.
T Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~l~~~ 158 (405)
T TIGR00891 118 YGSSAAYVIESWPKHLRNKASGLLISGY-AVGAVVAAQVYSL 158 (405)
T ss_pred hHHHHHHHHHhCChhhhhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3334445567788999999999877644 3466666665543
No 55
>PRK03699 putative transporter; Provisional
Probab=58.70 E-value=9.6 Score=27.11 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhh
Q psy12613 18 FIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG 73 (76)
Q Consensus 18 f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG 73 (76)
+.+..++..+..+...........+..++++|+.++++......+ |..-+|.+.|
T Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~ 152 (394)
T PRK03699 98 FSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSM-AGMIFPIIAA 152 (394)
T ss_pred HHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333333333333333333444556777888899998887654433 3334454444
No 56
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=58.60 E-value=3.9 Score=27.69 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchh
Q psy12613 21 ILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGP 69 (76)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgP 69 (76)
..++..+..+...........+.+|+|+|+.+.|+...... +|.+-||
T Consensus 305 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~~~~igP 352 (352)
T PF07690_consen 305 ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGS-LGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHCC
Confidence 33334445555566667788888999999999999997655 4444343
No 57
>TIGR00893 2A0114 d-galactonate transporter.
Probab=57.77 E-value=2.7 Score=28.52 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 18 FIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 18 f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
+.+..++..+..+...+......-+..|+|+|+.++|+...... +|.+-+|.+.|.
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~ 140 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQG-LGGIIGGPLVGW 140 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhch-HHHHHHHHHHHH
Confidence 33333344444444444445566677888999999998776544 455556655543
No 58
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=57.69 E-value=4.1 Score=29.37 Aligned_cols=41 Identities=10% Similarity=0.138 Sum_probs=28.6
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 34 AGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 34 ~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.+......+.+++|+|+.++|+.... .-+|..-||.+-|.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~g~~ig~~l~g~l 158 (400)
T PRK11646 118 PPRTALVIKLIRPHQRGRFFSLLMMQ-DSAGAVIGALLGSWL 158 (400)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 33444556778899999999998774 445566677776653
No 59
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=55.45 E-value=10 Score=27.54 Aligned_cols=36 Identities=11% Similarity=-0.093 Sum_probs=24.1
Q ss_pred cccccceeeEEeecCCCCchHHHHHHHHHHHHhccC
Q psy12613 31 TGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFI 66 (76)
Q Consensus 31 ~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~I 66 (76)
....+......+..|+++|+.+.|+......+-+.+
T Consensus 134 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~ 169 (438)
T TIGR00712 134 MGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI 169 (438)
T ss_pred cchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH
Confidence 333344445567788999999999977766554443
No 60
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=54.92 E-value=4.8 Score=32.84 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=35.0
Q ss_pred HHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 22 LCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
.++..+..++..+|...+.-+.+++++|+-++|+..++..+ |..-|+++.|.
T Consensus 341 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~-~~~ig~~~~g~ 392 (1140)
T PRK06814 341 LFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAA-FMVAGTIILAL 392 (1140)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHH-HHHHHHHHHHH
Confidence 33444555566667777888999999999999998876544 33444444443
No 61
>PRK03893 putative sialic acid transporter; Provisional
Probab=53.81 E-value=3.9 Score=29.74 Aligned_cols=40 Identities=5% Similarity=0.032 Sum_probs=28.7
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 35 GNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 35 p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.......+..++|+|+.++|+..... -+|.+-+|.+.|.+
T Consensus 128 ~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l 167 (496)
T PRK03893 128 SSATYVIESWPKHLRNKASGFLISGF-SIGAVVAAQVYSLV 167 (496)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33445668889999999999887654 45677777776643
No 62
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=53.70 E-value=6.3 Score=27.89 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=29.1
Q ss_pred ccceeeEEeecCC-CCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 34 AGNTIIQFRCVSP-EDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 34 ~p~~~~~LR~V~~-~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
........|..++ ++++.+.++...+. -+|.+-||.+.|++
T Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~lg~~~g~~~~G~l 363 (390)
T TIGR02718 322 VAIYTAFMRFAGDGDQAGTDVTAVQSTR-DLGELIASSIAGYL 363 (390)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3334444566665 78899999988776 56778888888764
No 63
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=53.14 E-value=2.8 Score=30.40 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=28.7
Q ss_pred EeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 41 FRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 41 LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.+..++++|+.+.|+......+.|..-||.+.|.+
T Consensus 371 ~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l 405 (438)
T TIGR00712 371 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 405 (438)
T ss_pred HHhcChhheeeehhhhchHHHhhhhhhcchhHHHH
Confidence 45678889999999998887776678899988865
No 64
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=52.30 E-value=7.3 Score=27.67 Aligned_cols=56 Identities=11% Similarity=-0.060 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 19 IFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 19 ~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.....+..+.........+. .++..|+++|+.+.|+......-+|..-||++-|++
T Consensus 297 ~~~q~l~g~~~~~~~~~~~~-~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l 352 (382)
T TIGR00902 297 FLLQILHCGTFAVCHLAAMR-YIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFI 352 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333333333332 233348889999999877666667777777776654
No 65
>PRK03545 putative arabinose transporter; Provisional
Probab=49.64 E-value=5.5 Score=28.20 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=23.6
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhh
Q psy12613 37 TIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG 73 (76)
Q Consensus 37 ~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG 73 (76)
....-|-.++|+|+.++|+...... +|..-||.+-|
T Consensus 119 ~~~i~~~~~~~~r~~~~g~~~~~~~-~g~~ig~~l~~ 154 (390)
T PRK03545 119 ASLAIRVAPAGKKAQALSLLATGTA-LAMVLGLPLGR 154 (390)
T ss_pred HHHHHHhCChhhhhhHHHHHHHHHH-HHHHHHhhHHH
Confidence 3455677889999999998765443 34555555444
No 66
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=49.51 E-value=6.4 Score=29.40 Aligned_cols=52 Identities=6% Similarity=-0.106 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhh
Q psy12613 21 ILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG 73 (76)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG 73 (76)
...+..+...+..+|.+..+.|.+|+++++.+.|+...+. -+|.+-++.+-|
T Consensus 357 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~-~lg~~v~~~~gg 408 (468)
T TIGR00788 357 DSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASIL-HLGSSVSGFLGV 408 (468)
T ss_pred hhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHH-HHHHHHHHHHHH
Confidence 3445556666777888888889999999999999998875 666776765444
No 67
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=49.32 E-value=9.8 Score=27.55 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=24.9
Q ss_pred EeecCCCCchHHHHHHHHHHHHhccCchhhhhh
Q psy12613 41 FRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG 73 (76)
Q Consensus 41 LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG 73 (76)
-...|+|.|+.+.|+...+.+++...-.|.+.|
T Consensus 362 ~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~ 394 (432)
T PRK10406 362 AEMFPAQVRALGVGLSYAVANALFGGSAEYVAL 394 (432)
T ss_pred HHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH
Confidence 356889999999999999888753333676655
No 68
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=48.35 E-value=5.6 Score=27.91 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=26.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 39 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 39 ~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
...+.+++++|+...|+...+ +-+|..-||.+.|.+
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~-~~~g~~~gp~~~G~l 370 (408)
T PRK09874 335 LLVYNSSNQIAGRIFSYNQSF-RDIGNVTGPLMGAAI 370 (408)
T ss_pred HHHHhCCcccceeeehHHHHH-HHHHHHhhHHHHHHH
Confidence 445677888888888887776 456777788888754
No 69
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=47.48 E-value=3.5 Score=29.65 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=28.9
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 37 TIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 37 ~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
...+-+.+|+|+|+.+.|+.+.. ...|.+-||.+-|.+
T Consensus 110 ~a~i~~~~~~~~~~~a~~~~~~~-~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 110 YGILTELLPGEKLVKANGWMEGS-TIAAILLGTVLGGAL 147 (393)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44556778999999999998754 567778888877754
No 70
>PRK10054 putative transporter; Provisional
Probab=47.37 E-value=8.7 Score=27.62 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=26.5
Q ss_pred EEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 40 QFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 40 ~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.-+.+++|+|+.++|+......+ |..-||.+-|.+
T Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~l-g~~igp~l~~~l 155 (395)
T PRK10054 121 FADNLSSTSKTKIFSLNYTMLNI-GWTVGPPLGTLL 155 (395)
T ss_pred HHHhcCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34677888999999998887764 777778776643
No 71
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=47.36 E-value=13 Score=30.12 Aligned_cols=39 Identities=5% Similarity=-0.154 Sum_probs=27.0
Q ss_pred HHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHh
Q psy12613 25 LNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGL 63 (76)
Q Consensus 25 ~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rll 63 (76)
..+..++..++......+.+++++|+.++|+..++..+.
T Consensus 332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg 370 (1146)
T PRK08633 332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVG 370 (1146)
T ss_pred HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHH
Confidence 333444444555566678889999999999988776643
No 72
>TIGR00901 2A0125 AmpG-related permease.
Probab=47.03 E-value=12 Score=25.90 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=29.0
Q ss_pred HHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHH
Q psy12613 22 LCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGC 61 (76)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~r 61 (76)
.++..+.......+.....-|.+|+|+|+..+|+......
T Consensus 316 ~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 316 ITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 3333444455566677788899999999999999877654
No 73
>PRK10504 putative transporter; Provisional
Probab=46.71 E-value=8 Score=28.05 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=28.6
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 34 AGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 34 ~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.+........+++++++.+.|+..+. +-+|..-||.+.|.+
T Consensus 372 ~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~g~~ig~~i~g~l 412 (471)
T PRK10504 372 SSMNTLTLKDLPDNLASSGNSLLSMI-MQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHcCCHHhccchHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444555678999999999998654 445677777776653
No 74
>PRK03893 putative sialic acid transporter; Provisional
Probab=46.50 E-value=5.2 Score=29.11 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=26.5
Q ss_pred EeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 41 FRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 41 LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
-..+++|+|+.++|+...+.. +|..-||.+.|.+
T Consensus 392 ~~~~~~~~~g~~~~~~~~~~~-~g~~lgp~l~g~l 425 (496)
T PRK03893 392 GGYFDTEQRAAGLGFTYNVGA-LGGALAPILGALI 425 (496)
T ss_pred HhhCCHHHhhcccchhhhhhh-HHHHHHHHHHHHH
Confidence 356788899999999887775 5667788888754
No 75
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=46.45 E-value=7.3 Score=28.42 Aligned_cols=58 Identities=9% Similarity=0.041 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 16 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 16 ~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
+.++...++..+..+...++......+..++|+|+.++++...... +|..-||.+.+.
T Consensus 95 ~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~~g~~i~~~ 152 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNP-FGSIIGMVVAQQ 152 (410)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4444444444444455555555555567788889988888776544 466666666543
No 76
>TIGR00895 2A0115 benzoate transport.
Probab=46.29 E-value=4.3 Score=27.89 Aligned_cols=40 Identities=8% Similarity=-0.002 Sum_probs=25.9
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 34 AGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 34 ~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
.+.....-+..++++|+.+.|+...... +|.+-+|.+.|.
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~ 163 (398)
T TIGR00895 124 PNLNALVSEYAPKRFRGTAVGLMFCGYP-IGAAVGGFLAGW 163 (398)
T ss_pred hhHHHHHHHHcCHHhhchhHhhHhhHHH-HHHHHHHHHHHH
Confidence 3334445556778899999998766544 455666666554
No 77
>TIGR00898 2A0119 cation transport protein.
Probab=46.15 E-value=18 Score=26.46 Aligned_cols=55 Identities=7% Similarity=0.120 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhh
Q psy12613 16 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPII 71 (76)
Q Consensus 16 ~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPii 71 (76)
+.+++.-++..+..+...........+.+++++|+.+.++..+ .-.+|.+-+|++
T Consensus 181 ~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~ 235 (505)
T TIGR00898 181 TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQV-FFSLGLVLLPLV 235 (505)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHH-HHHHHHHHHHHH
Confidence 3344444444444444444556677888999999999888744 334555555554
No 78
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=45.39 E-value=6.5 Score=27.16 Aligned_cols=40 Identities=15% Similarity=-0.024 Sum_probs=26.0
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 34 AGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 34 ~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
++.....-+..++|+|+.+.|+......+ |.+-||.+.|.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~ 151 (385)
T TIGR00710 112 VISQALVRDIYPGEELSRIYSILMPVLAL-APAVAPLLGGY 151 (385)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444555667888999999998876553 44556655543
No 79
>PRK12382 putative transporter; Provisional
Probab=43.96 E-value=11 Score=26.60 Aligned_cols=34 Identities=12% Similarity=-0.030 Sum_probs=21.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHHHhccCchhhhhh
Q psy12613 39 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG 73 (76)
Q Consensus 39 ~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG 73 (76)
...+.+++|+|+.++|+..... -.|..-||.+-|
T Consensus 136 ~~~~~~~~~~r~~a~~~~~~~~-~~g~~~g~~~~~ 169 (392)
T PRK12382 136 WGLGLVGPKHSGKVMSWNGMAM-YGALAAGAPLGL 169 (392)
T ss_pred HHHhhCCccccchhhhHHHHHH-HHHHHHHHHHHH
Confidence 3456789999999999866433 334445555443
No 80
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=41.52 E-value=18 Score=26.81 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=24.9
Q ss_pred ecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 43 CVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 43 ~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
..|++.|+.++|+..-+.++.| .-+|.+.|++
T Consensus 370 ~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l 401 (490)
T PRK10642 370 MFPTHIRYSALAAAFNISVLVA-GLTPTLAAWL 401 (490)
T ss_pred HCCCccchHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5789999999998777777765 5678777754
No 81
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=41.45 E-value=11 Score=27.47 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=26.1
Q ss_pred eeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 37 TIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 37 ~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
....-+-.|+++|+.+.|+...... +|.+-+|++.|.+
T Consensus 153 ~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~i~~~l~~~l 190 (465)
T TIGR00894 153 HKIIVKWAPPKERSRLLGMSTSGFQ-LGTFIFLPISGWL 190 (465)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3455567788999999999876544 4566677666543
No 82
>PRK03545 putative arabinose transporter; Provisional
Probab=41.36 E-value=15 Score=25.99 Aligned_cols=34 Identities=6% Similarity=0.219 Sum_probs=24.0
Q ss_pred EeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 41 FRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 41 LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+....+|+|+.+.|+...+.+ +|..-||++.|++
T Consensus 319 ~~~~~~~~~~~~~g~~~~~~~-~g~~~G~~~~G~~ 352 (390)
T PRK03545 319 VLKLAPDATDVAMALFSGIFN-IGIGAGALLGNQV 352 (390)
T ss_pred HHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 334456788999998877754 4555688888864
No 83
>PRK11010 ampG muropeptide transporter; Validated
Probab=40.95 E-value=11 Score=28.23 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhh
Q psy12613 16 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPI 70 (76)
Q Consensus 16 ~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPi 70 (76)
+.+.+...+..++.+...++.....-+.+++|+|+.+.|+.....++ |.+-++.
T Consensus 108 ~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~l-G~llg~~ 161 (491)
T PRK11010 108 RWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRL-AMLVSGG 161 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHH-HHHHHHH
Confidence 33444444445555555555555566778899999999988765443 3444443
No 84
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=40.54 E-value=16 Score=26.63 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHH
Q psy12613 21 ILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALG 60 (76)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~ 60 (76)
+.++..|.+-.+--..--..|| ++|+...|+|++.++.
T Consensus 202 vvaL~~FiGp~~dfiLa~~lL~--~~~~~TlavGL~~~~~ 239 (282)
T COG3833 202 VVALLAFIGPFGDFILASLLLR--DPENYTLAVGLQSFLN 239 (282)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc--ChhhhhhHHHHHHHhc
Confidence 3444444444444444456788 7888999999999876
No 85
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=40.42 E-value=21 Score=25.68 Aligned_cols=48 Identities=10% Similarity=-0.067 Sum_probs=25.9
Q ss_pred HHHHHhcccccceeeEEeecCCCC-chHHHHHHHHHHHHhccCchhhhhh
Q psy12613 25 LNFFSATGRAGNTIIQFRCVSPED-KSLSIGITEALGCGLAFIPGPIIYG 73 (76)
Q Consensus 25 ~~~~~~~~~~p~~~~~LR~V~~~~-ks~alG~~~~~~rllg~IPgPiifG 73 (76)
..+...+..+|......+..++|+ ++.+.++..+ .|-+|..-+..++|
T Consensus 303 ~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~-~~~~~~~~~~~~~~ 351 (393)
T PRK11195 303 IGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNF-NENLAMLLMLGLYS 351 (393)
T ss_pred HHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhH-HHHHHHHHHHHHHH
Confidence 333444444665555445444443 5888888774 44555555555554
No 86
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=38.89 E-value=14 Score=27.94 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHH
Q psy12613 20 FILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEAL 59 (76)
Q Consensus 20 ~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~ 59 (76)
++.+.-.++++...+=.+..+.+-+++|||=|++|..++-
T Consensus 340 ~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvs 379 (402)
T PF02487_consen 340 VLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVS 379 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444445566666666666667789999999999987753
No 87
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=38.87 E-value=29 Score=26.62 Aligned_cols=52 Identities=6% Similarity=0.034 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcccccceeeEEeecCCCCc--hHHHHHHHHHHHHhccCchhh
Q psy12613 18 FIFILCLLNFFSATGRAGNTIIQFRCVSPEDK--SLSIGITEALGCGLAFIPGPI 70 (76)
Q Consensus 18 f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~k--s~alG~~~~~~rllg~IPgPi 70 (76)
++..+.+.-+...+.+.|....+-..+|++|| ..|.+.+..+. -+|++-|+.
T Consensus 117 ~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~-~lG~ilg~~ 170 (477)
T TIGR01301 117 FVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM-AIGNVLGYA 170 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34444445556666778888888889998876 36666655544 234444443
No 88
>PRK11663 regulatory protein UhpC; Provisional
Probab=37.57 E-value=10 Score=27.46 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=26.8
Q ss_pred EeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 41 FRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 41 LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
-+..++++|+.+.|+...+.+ +|..-+|.++|++
T Consensus 363 ~~~~~~~~~g~~~g~~~~~~~-~g~~~~p~~~g~l 396 (434)
T PRK11663 363 AECSHKEAAGAATGFVGLFAY-LGAALSGYPLAKV 396 (434)
T ss_pred HhcccHhhHHhHHHHHHHHHH-HHHHHhcccHHHH
Confidence 355678899999999998766 4677788888765
No 89
>PRK09528 lacY galactoside permease; Reviewed
Probab=37.47 E-value=8.6 Score=27.57 Aligned_cols=35 Identities=9% Similarity=-0.127 Sum_probs=24.4
Q ss_pred EeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 41 FRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 41 LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
-+.+++++++.+.+...-...-+|.+-+|.+.|++
T Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l 375 (420)
T PRK09528 341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNL 375 (420)
T ss_pred HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHH
Confidence 35567788876655534445778888889888875
No 90
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=36.12 E-value=26 Score=18.35 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=15.7
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHh
Q psy12613 6 ACPADCGSHFMWFIFILCLLNFFSA 30 (76)
Q Consensus 6 ~C~~~C~~~~~~f~~~~~~~~~~~~ 30 (76)
.|.+||-. +|-|..+..++.+++.
T Consensus 11 ~~~sdqIW-FYG~~~ls~~m~~~ty 34 (40)
T PF13106_consen 11 ECKSDQIW-FYGFFGLSIFMILFTY 34 (40)
T ss_pred ccccccEE-EeeHHHHHHHHHHHHH
Confidence 48888965 5667766665555443
No 91
>KOG2615|consensus
Probab=35.76 E-value=7.1 Score=30.16 Aligned_cols=37 Identities=35% Similarity=0.535 Sum_probs=29.1
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 38 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 38 ~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.+.--.++||+|+.+++...+ .+-+|+|-||.+-|++
T Consensus 143 AiisdV~sek~r~l~ms~v~~-a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGT-AFGLGFILGPMIGGYL 179 (451)
T ss_pred HHHHhhcChhhccceeeeeeh-hhhcchhhcchhhhHH
Confidence 344456889999999988776 4568999999998864
No 92
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=35.57 E-value=11 Score=28.11 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=23.9
Q ss_pred eec-CCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 42 RCV-SPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 42 R~V-~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+-. ++++|..++|+...... +|..-||.+-|++
T Consensus 121 ~~~~~~~~r~~~~g~~~~~~~-~g~~~gp~lgg~l 154 (495)
T PRK14995 121 ATFTEEKQRNMALGVWAAVGS-GGAAFGPLVGGIL 154 (495)
T ss_pred HHcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 443 67889999999877554 4677788776654
No 93
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=35.41 E-value=14 Score=25.46 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=24.5
Q ss_pred eecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 42 RCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 42 R~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
....|+++..+.|+.....+ +|..-||.+.|.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~g~~ 346 (375)
T TIGR00899 314 QDLMPGRAGAATTLYTNTGR-VGWIIAGSVGGIL 346 (375)
T ss_pred HHhCcchhhHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33445677788999887777 7888888888764
No 94
>PRK10054 putative transporter; Provisional
Probab=35.14 E-value=18 Score=25.97 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=25.3
Q ss_pred EEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 40 QFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 40 ~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.-+.+|++.|+.+.|.+. ...+|..-||.+.|++
T Consensus 323 ~~~~~p~~~~~~~~~~~~--~~~~G~~~Gp~~~G~l 356 (395)
T PRK10054 323 IDHIAPPGMKASYFSAQS--LGWLGAAINPLVSGVI 356 (395)
T ss_pred HHHhCCcccceehHhHHH--HHHHHHHHHHHHHHHH
Confidence 336678888888888765 3447888999988875
No 95
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=34.30 E-value=23 Score=26.21 Aligned_cols=45 Identities=29% Similarity=0.256 Sum_probs=35.2
Q ss_pred cccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 31 TGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 31 ~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
..++......=|.+|+|.|+.++|+-..+..-+|..-|..+-|++
T Consensus 317 ~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l 361 (400)
T PF03825_consen 317 LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL 361 (400)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334455566667789999999999999888888888888877765
No 96
>KOG2615|consensus
Probab=33.05 E-value=27 Score=27.08 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=37.2
Q ss_pred HHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 22 LCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
..+-++.+....+-.+.+....++++||+.+.|+..-.+.+. -.-||.+-|.
T Consensus 359 s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~ala-RaiGPlv~g~ 410 (451)
T KOG2615|consen 359 STLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALA-RAIGPLVSGV 410 (451)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHH-HHhhhhhhhe
Confidence 345566677766777788889999999999999987665433 3336666654
No 97
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=32.83 E-value=17 Score=25.70 Aligned_cols=42 Identities=12% Similarity=0.017 Sum_probs=29.3
Q ss_pred ccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 34 AGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 34 ~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.|..+..++..++++++.+.|+...+....|..-||++.|.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l 352 (382)
T PRK11128 311 HLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFL 352 (382)
T ss_pred HHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777777788777666677777788887764
No 98
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=32.71 E-value=15 Score=25.90 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=23.4
Q ss_pred cceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhh
Q psy12613 35 GNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPII 71 (76)
Q Consensus 35 p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPii 71 (76)
......-+.+++|+|+.++|+...... +|..-+|.+
T Consensus 123 ~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~ 158 (406)
T PRK11551 123 NLIALTSEAVGPRLRGTAVSLMYCGVP-FGGALASVI 158 (406)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 334455677888999999998876543 334444443
No 99
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=31.14 E-value=15 Score=25.93 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=25.1
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 36 NTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 36 ~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
.....-+..++|+|+.+.|+......+ |.+-+|++.|.
T Consensus 112 ~~~~i~~~~~~~~r~~~~~~~~~~~~i-~~~~~~~i~~~ 149 (392)
T PRK10473 112 AFAILRDTLDDRRRAKVLSLLNGITCI-IPVLAPVLGHL 149 (392)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 334445667889999999988766543 44556666543
No 100
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=29.90 E-value=13 Score=26.96 Aligned_cols=35 Identities=9% Similarity=-0.047 Sum_probs=24.0
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhh
Q psy12613 38 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG 73 (76)
Q Consensus 38 ~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG 73 (76)
...-+..|+++|+.++|+...... +|.+-+|.+-|
T Consensus 119 ~~~~~~~~~~~rg~~~~~~~~~~~-~g~~~~~~~~~ 153 (412)
T TIGR02332 119 LYLTFWFPAYFRARANALFMIAMP-VTMALGLILSG 153 (412)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 345666788899999999876554 45555665544
No 101
>PRK03633 putative MFS family transporter protein; Provisional
Probab=29.71 E-value=22 Score=25.05 Aligned_cols=35 Identities=6% Similarity=0.062 Sum_probs=23.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 39 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 39 ~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
...+..++++|+.++|..... -.+|..-||.+.|.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~ 152 (381)
T PRK03633 118 ALMCSGTSRNRGRLLAAYMMV-YYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHhCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 345667888999999986654 34456666666554
No 102
>PRK10504 putative transporter; Provisional
Probab=29.66 E-value=14 Score=26.77 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=25.4
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 38 IIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 38 ~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
....+.+++++|+.+.|+...... +|..-||.+-|.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~g~l 157 (471)
T PRK10504 121 LTVMKIVPREQYMAAMTFVTLPGQ-VGPLLGPALGGLL 157 (471)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHH-HHHHhhhHHHHHH
Confidence 344567788888999988876554 4566677766643
No 103
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=29.66 E-value=28 Score=26.56 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=33.4
Q ss_pred cccceeeEEeecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 33 RAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 33 ~~p~~~~~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+.-+-...-|.+|+++.+--.|+..+.-|.- ++-||.++|.+
T Consensus 398 qs~sRs~~~~LiP~g~e~efFgly~i~gk~s-s~lGPll~g~i 439 (477)
T PF11700_consen 398 QSASRSLFSRLIPPGREAEFFGLYAITGKAS-SWLGPLLFGLI 439 (477)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444556778899999999999999888876 56689999875
No 104
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=29.12 E-value=25 Score=27.18 Aligned_cols=42 Identities=19% Similarity=0.018 Sum_probs=29.2
Q ss_pred cccceeeEE-eecCCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 33 RAGNTIIQF-RCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 33 ~~p~~~~~L-R~V~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
..|....++ ..|++||-.-|.++.++..++- .+-||.+-|.+
T Consensus 120 ~~PA~~A~ip~lV~~~~L~~A~al~s~~~nia-r~iGPalgG~L 162 (524)
T PF05977_consen 120 FNPAWQAIIPELVPKEDLPAANALNSISFNIA-RIIGPALGGIL 162 (524)
T ss_pred HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH-HhccchHHHHH
Confidence 356655555 5789999899999888876644 44477766654
No 105
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=26.58 E-value=94 Score=16.58 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhcccccceeeEEeecCCCCc
Q psy12613 16 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDK 49 (76)
Q Consensus 16 ~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~k 49 (76)
+.|..++++..|+...... ...+|..++|-
T Consensus 7 FvY~mIiflslflv~~~~~----~~~~C~~d~DC 36 (54)
T PF07127_consen 7 FVYAMIIFLSLFLVVTNVD----AIIPCKTDSDC 36 (54)
T ss_pred hHHHHHHHHHHHHhhcccC----CCcccCccccC
Confidence 4456666655555544433 55677777663
No 106
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=25.71 E-value=48 Score=24.56 Aligned_cols=44 Identities=11% Similarity=-0.014 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHHH
Q psy12613 18 FIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGC 61 (76)
Q Consensus 18 f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~r 61 (76)
+++.-++..+..+....+.........|+++|+.++++......
T Consensus 118 ~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~ 161 (502)
T TIGR00887 118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQG 161 (502)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 44444444444444455566777888999999999998876543
No 107
>PRK11043 putative transporter; Provisional
Probab=25.48 E-value=64 Score=22.75 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=21.0
Q ss_pred EEeecCCCCchHHHHHHHHHHHHhccCchhhhhhc
Q psy12613 40 QFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGA 74 (76)
Q Consensus 40 ~LR~V~~~~ks~alG~~~~~~rllg~IPgPiifG~ 74 (76)
..+.. +++|+.+.|+...+.... ..-++.+.|.
T Consensus 321 ~~~~~-~~~~g~~~g~~~~~~~~~-~~~~~~~~g~ 353 (401)
T PRK11043 321 ALRPF-PQATGKAAALQNTLQLGL-CFLASLLVSA 353 (401)
T ss_pred HhhhC-cccChHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34555 467999999999865444 4444445554
No 108
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=25.45 E-value=28 Score=26.79 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=26.5
Q ss_pred EeecCCC--CchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 41 FRCVSPE--DKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 41 LR~V~~~--~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
=+..|++ .|+-+.++.....+ +|+.-+|++.|++
T Consensus 126 ~elfp~~~~~R~sgf~i~Y~~~n-lG~~iap~l~g~L 161 (493)
T PRK15462 126 GELYEPTDPRRDGGFSLMYAAGN-VGSIIAPIACGYA 161 (493)
T ss_pred HHHCCCCCccccceehHHHHHHH-HHHHHHHHHHHHH
Confidence 3445655 58889999999999 5888899988764
No 109
>KOG0255|consensus
Probab=24.62 E-value=67 Score=23.84 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHH
Q psy12613 12 GSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGI 55 (76)
Q Consensus 12 ~~~~~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~ 55 (76)
.+.+..|.+.=++..+..+...+-......=-+.+++|+.++.+
T Consensus 168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL 211 (521)
T ss_pred hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH
Confidence 33456667766666666666666666677788999999999888
No 110
>PTZ00478 Sec superfamily; Provisional
Probab=24.46 E-value=52 Score=19.75 Aligned_cols=30 Identities=10% Similarity=0.208 Sum_probs=20.9
Q ss_pred eeeEEeecCCCCc-----hHHHHHHHHHHHHhccC
Q psy12613 37 TIIQFRCVSPEDK-----SLSIGITEALGCGLAFI 66 (76)
Q Consensus 37 ~~~~LR~V~~~~k-----s~alG~~~~~~rllg~I 66 (76)
..+..||-.|+.| +.|.|+...++...|++
T Consensus 31 ~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~ 65 (81)
T PTZ00478 31 RRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYS 65 (81)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788888877 45677777777776654
No 111
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=24.30 E-value=34 Score=25.79 Aligned_cols=43 Identities=7% Similarity=-0.070 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcccccceeeEEeecCCCCchHHHHHHHHHH
Q psy12613 18 FIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALG 60 (76)
Q Consensus 18 f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~ks~alG~~~~~~ 60 (76)
.+...++..+-..+...+.+....+.+|+++++.++|+..+..
T Consensus 382 ~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~ 424 (489)
T PRK10207 382 IVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQ 424 (489)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 3344444555555556666888899999999999999966433
No 112
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=23.62 E-value=45 Score=23.67 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=19.2
Q ss_pred CCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 46 PEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 46 ~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+++++.+.|+..+..+ +|..-||.+.|++
T Consensus 349 ~~~~G~~~~~~~~~~~-~g~~lg~~i~g~l 377 (437)
T TIGR00792 349 VRAEGLVYSVRTFVRK-LGQALAGFLVGLI 377 (437)
T ss_pred ccchHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3456788888888654 4556677776654
No 113
>PRK10091 MFS transport protein AraJ; Provisional
Probab=23.25 E-value=31 Score=24.38 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=18.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHHHhccCchhhh
Q psy12613 39 IQFRCVSPEDKSLSIGITEALGCGLAFIPGPII 71 (76)
Q Consensus 39 ~~LR~V~~~~ks~alG~~~~~~rllg~IPgPii 71 (76)
..-|..++++|..++|+...... +|..-||.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l 146 (382)
T PRK10091 115 VLSKIIKPGKVTAAVAGMVSGMT-VANLLGIPL 146 (382)
T ss_pred HHHHhCChHHhhHHHHHHHHHHH-HHHHHhccH
Confidence 34466778888888887665332 333334443
No 114
>PF14325 DUF4383: Domain of unknown function (DUF4383)
Probab=22.83 E-value=89 Score=19.84 Aligned_cols=21 Identities=43% Similarity=0.494 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHhccCchhh
Q psy12613 50 SLSIGITEALGCGLAFIPGPI 70 (76)
Q Consensus 50 s~alG~~~~~~rllg~IPgPi 70 (76)
+...|+-.+..-++|+||+-.
T Consensus 5 al~~G~~fl~~GilGFiPg~t 25 (125)
T PF14325_consen 5 ALVIGVVFLLLGILGFIPGFT 25 (125)
T ss_pred HHHHHHHHHHHHHHhCcCCCC
Confidence 677889999999999999854
No 115
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=22.03 E-value=82 Score=22.68 Aligned_cols=27 Identities=7% Similarity=-0.023 Sum_probs=19.4
Q ss_pred eeEEeecCCCCchHHHHHHHHHHHHhc
Q psy12613 38 IIQFRCVSPEDKSLSIGITEALGCGLA 64 (76)
Q Consensus 38 ~~~LR~V~~~~ks~alG~~~~~~rllg 64 (76)
...-+..|+++|+.+.|+...+.++-+
T Consensus 387 ~~~~e~~p~~~r~~~~g~~~~~~~~g~ 413 (479)
T PRK10077 387 VLLSEIFPNAIRGKALAIAVAAQWIAN 413 (479)
T ss_pred HHhHhhCChhHHHHHHHHHHHHHHHHH
Confidence 344455688999999999887665443
No 116
>PF08189 Meleagrin: Meleagrin/Cygnin family; InterPro: IPR012573 This family consists of meleagrin and cygnin basic peptides that are isolated from turkey and black swan respectively. Both peptides are low in molecular weight and contain three disulphide bonds with high concentrations of aromatic residues. These peptides show similarity to transferrins and probably play some vital role in avian eggs but the exact function is still unknown [].
Probab=21.92 E-value=36 Score=17.61 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=8.1
Q ss_pred cCCCCCCCcch
Q psy12613 3 TQGACPADCGS 13 (76)
Q Consensus 3 ~~G~C~~~C~~ 13 (76)
..|.|.+.|.+
T Consensus 8 kiGYCS~~CsK 18 (39)
T PF08189_consen 8 KIGYCSSKCSK 18 (39)
T ss_pred ccceecccccc
Confidence 35888888865
No 117
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=21.83 E-value=1.1e+02 Score=22.11 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=20.8
Q ss_pred CCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 46 PEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 46 ~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
++..+.+.|+...... +|.+-+|.+.|++
T Consensus 391 ~~~~g~~~g~~~~~~~-l~~~i~p~l~g~~ 419 (465)
T TIGR00894 391 PRFLGFIKGITGLPGF-IGGLIASTLAGNI 419 (465)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHhhhee
Confidence 4577888888887765 4667777777764
No 118
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=21.74 E-value=32 Score=17.77 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=23.1
Q ss_pred ceeeEEeecCCCCchHHHHHHHHHHHHhc
Q psy12613 36 NTIIQFRCVSPEDKSLSIGITEALGCGLA 64 (76)
Q Consensus 36 ~~~~~LR~V~~~~ks~alG~~~~~~rllg 64 (76)
...-++|...++|-..|+|+..-+.|-+|
T Consensus 12 gl~gl~~~l~DpdvqrgL~~ll~~lk~lG 40 (42)
T PF07849_consen 12 GLFGLLRALRDPDVQRGLGFLLAFLKALG 40 (42)
T ss_pred CHHHHHHHHcCHHHHHHHHHHHHHHHHHc
Confidence 44556788888888889999888888876
No 119
>KOG3626|consensus
Probab=21.17 E-value=1.6e+02 Score=24.30 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhcccccceeeEEeecCCCCc----hHHHHHHHHHHHHhc
Q psy12613 16 MWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDK----SLSIGITEALGCGLA 64 (76)
Q Consensus 16 ~~f~~~~~~~~~~~~~~~~p~~~~~LR~V~~~~k----s~alG~~~~~~rllg 64 (76)
.....+++++.++.+.+.+|.+.+=+-.++|+.| ++=+|+.+. +|.+|
T Consensus 234 ~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~-~~~lG 285 (735)
T KOG3626|consen 234 SYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYS-MAILG 285 (735)
T ss_pred chhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHH-HHHhh
Confidence 3356677788999999999999888888777665 466676663 45543
No 120
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=21.04 E-value=38 Score=25.27 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=21.5
Q ss_pred eecCCCC---chHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 42 RCVSPED---KSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 42 R~V~~~~---ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
+..+++| |+.+.++...... +|..-||++.|++
T Consensus 129 ~~~~~~~~~~r~~~~~~~~~~~n-iG~~ig~~l~g~l 164 (475)
T TIGR00924 129 KLYERGDMPRRDGGFTLFYMSIN-IGSFISPLLAGVI 164 (475)
T ss_pred HhcCCCCcccccceehhHHHHHH-HHHHHHHHHHHHH
Confidence 4555544 7777777666555 5777788777653
No 121
>PRK15011 sugar efflux transporter B; Provisional
Probab=20.46 E-value=54 Score=23.29 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=21.6
Q ss_pred CCCCchHHHHHHHHHHHHhccCchhhhhhcc
Q psy12613 45 SPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75 (76)
Q Consensus 45 ~~~~ks~alG~~~~~~rllg~IPgPiifG~~ 75 (76)
.|++|+.+.|+.....+ +|..-||.+.|.+
T Consensus 334 ~p~~~g~~~~~~~~~~~-lg~~~g~~l~G~i 363 (393)
T PRK15011 334 MPGQAGSATTLYTNTSR-VGWIIAGSLAGIV 363 (393)
T ss_pred CCCCcchHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 35668889998877655 5777777777754
Done!