RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12613
(76 letters)
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 68.9 bits (169), Expect = 1e-15
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 2 ATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGC 61
A++G CP+DC + F++F+ ++ +L+F +I RCV PE+KSL++G+ L
Sbjct: 481 ASKGYCPSDCCTQFLYFLILMAILSFIGFLSAIPLYMIVLRCVPPEEKSLALGVQWLLIR 540
Query: 62 GLAFIPGPIIYGAL 75
L FIP PII+GAL
Sbjct: 541 LLGFIPAPIIFGAL 554
>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter. The
Organo Anion Transporter (OAT) Family (TC
2.A.60)Proteins of the OAT family catalyze the
Na+-independent facilitated transport of organic anions
such as bromosulfobromophthalein and prostaglandins as
well as conjugated and unconjugated bile acids
(taurocholate and cholate, respectively). These
transporters have been characterized in mammals, but
homologues are present in C. elegans and A. thaliana.
Some of the mammalian proteins exhibit a high degree of
tissue specificity. For example, the rat OAT is found at
high levels in liver and kidney and at lower levels in
other tissues. These proteins possess 10-12 putative
a-helical transmembrane spanners. They may catalyze
electrogenic anion uniport or anion exchange.
Length = 633
Score = 45.1 bits (107), Expect = 3e-07
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 2 ATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGC 61
A +G C C + ++F+ + L+F + ++ R V+PE++SL+IG+
Sbjct: 505 AKKGLCNPSCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEERSLAIGLQWLCMR 564
Query: 62 GLAFIPGPIIYGALL 76
IP PI++G L+
Sbjct: 565 VFGTIPAPILFGLLI 579
>gnl|CDD|129531 TIGR00439, ftsX, putative protein insertion permease FtsX. FtsX is
an integral membrane protein encoded in the same operon
as signal recognition particle docking protein FtsY and
FtsE. It belongs to a family of predicted permeases and
may play a role in the insertion of proteins required
for potassium transport, cell division, and other
activities. FtsE is a hydrophilic nucleotide-binding
protein that associates with the inner membrane by means
of association with FtsX [Cellular processes, Cell
division, Protein fate, Protein and peptide secretion
and trafficking].
Length = 309
Score = 27.5 bits (61), Expect = 0.54
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 14 HFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG 73
+WF+ +L + F GN+I + + +S + SI +T+ LG +FI P +Y
Sbjct: 180 KVLWFLSVLMGMAVFLV---IGNSI-RLQILSRRE---SIEVTKLLGATDSFILRPFLYQ 232
Query: 74 ALL 76
+
Sbjct: 233 GMW 235
>gnl|CDD|149770 pfam08816, Ivy, Inhibitor of vertebrate lysozyme (Ivy). This
bacterial family is a strong inhibitor of vertebrate
lysozyme.
Length = 118
Score = 27.0 bits (60), Expect = 0.74
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 6 AC-PADCGSHFMWFIF 20
AC P DC S+ + F
Sbjct: 50 ACKPHDCASNRLAVAF 65
>gnl|CDD|220036 pfam08837, DUF1810, Protein of unknown function (DUF1810). This
is a family of uncharacterized proteins. The structure
of one of the members in this family has been solved
and it adopts a mainly alpha helical structure.
Length = 139
Score = 26.8 bits (60), Expect = 0.84
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 13 SHFMWFIF 20
SH+MWFIF
Sbjct: 31 SHWMWFIF 38
>gnl|CDD|227484 COG5155, ESP1, Separase, a protease involved in sister chromatid
separation [Cell division and chromosome partitioning /
Posttranslational modification, protein turnover,
chaperones].
Length = 1622
Score = 26.9 bits (59), Expect = 1.1
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 17 WFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGL--AFIPGPIIYGA 74
F+ LL + + +I C+ ++K S I L A++ +I A
Sbjct: 638 EMDFVKMLLCYLNFNNFDKLSIELSLCIKSKEKYYSS-IVPYADNYLLEAYLSLYMIDDA 696
Query: 75 LL 76
L+
Sbjct: 697 LM 698
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 26.5 bits (59), Expect = 1.1
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 21 ILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 75
++ L F G G +I L+ G+ +LG L I GPI+ GA+
Sbjct: 318 LVALGFFGLGAGAIGWALISDN-APGNIAGLTGGLINSLGN-LGGIVGPIVIGAI 370
>gnl|CDD|234146 TIGR03211, catechol_2_3, catechol 2,3 dioxygenase. Members of
this family all are enzymes active as catechol 2,3
dioxygenase (1.13.11.2), although some members have
highly significant activity on catechol derivatives
such as 3-methylcatechol, 3-chlorocatechol, and
4-chlorocatechol (see Mars, et al.). This enzyme is
also called metapyrocatechase, as it performs a
meta-cleavage (an extradiol ring cleavage), in contrast
to the ortho-cleavage (intradiol ring
cleavage)performed by catechol 1,2-dioxygenase (EC
1.13.11.1), also called pyrocatechase [Energy
metabolism, Other].
Length = 303
Score = 25.7 bits (57), Expect = 2.1
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 33 RAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPG 68
AG + F+ S D + EA G G +IP
Sbjct: 58 TAGLDHMAFKVESEADLERLVKRLEAYGVGTGWIPA 93
>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.
Length = 460
Score = 24.8 bits (55), Expect = 6.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 31 TGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGP 69
TGRAG+ + V+PE+ + I + LG L + P P
Sbjct: 333 TGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLP 371
>gnl|CDD|236961 PRK11716, PRK11716, DNA-binding transcriptional regulator IlvY;
Provisional.
Length = 269
Score = 24.4 bits (54), Expect = 7.4
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 58 ALGCGLAFIP 67
ALGCG+ +P
Sbjct: 209 ALGCGVGLLP 218
>gnl|CDD|217865 pfam04054, Not1, CCR4-Not complex component, Not1. The Ccr4-Not
complex is a global regulator of transcription that
affects genes positively and negatively and is thought
to regulate transcription factor TFIID.
Length = 375
Score = 24.1 bits (53), Expect = 9.2
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 13 SHFMWFIFILCLLNFFSATGRAGNT-IIQ 40
SH +F ++ L+ F + IQ
Sbjct: 291 SHTHYFSCVI--LHLFGSDEWESQKEDIQ 317
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.146 0.488
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,801,723
Number of extensions: 284182
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 23
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.1 bits)