RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12613
         (76 letters)



>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
           DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 171

 Score = 27.7 bits (60), Expect = 0.11
 Identities = 13/64 (20%), Positives = 25/64 (39%)

Query: 7   CPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFI 66
              +   +F +       L+    +GR G+  +    ++  D+     I + LG  +A I
Sbjct: 99  QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 158

Query: 67  PGPI 70
           P  I
Sbjct: 159 PATI 162


>d1uuza_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 130

 Score = 27.1 bits (60), Expect = 0.15
 Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 1/16 (6%)

Query: 6  AC-PADCGSHFMWFIF 20
          +C P DCG++ +   F
Sbjct: 58 SCKPHDCGNNRLLVAF 73


>d1gpqa_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy
          {Escherichia coli [TaxId: 562]}
          Length = 127

 Score = 26.7 bits (59), Expect = 0.21
 Identities = 7/16 (43%), Positives = 10/16 (62%), Gaps = 1/16 (6%)

Query: 6  AC-PADCGSHFMWFIF 20
          AC P DCGS  +  ++
Sbjct: 55 ACKPHDCGSQRIAVMW 70


>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922)
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 140

 Score = 25.8 bits (57), Expect = 0.42
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 13 SHFMWFIF 20
           H+MWF+F
Sbjct: 30 GHWMWFVF 37


>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
           {Escherichia coli [TaxId: 562]}
          Length = 456

 Score = 25.2 bits (54), Expect = 0.93
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 41  FRCVSPEDKSLSIGITEALGCGLAFIPGPII 71
              V+P    +++   E +       PG ++
Sbjct: 353 VGLVTPLRDGMNLVAKEYVAAQDPANPGVLV 383


>d1g3nc2 a.74.1.1 (C:148-253) Viral cyclin {Kaposi's
          sarcoma-associated herpesvirus [TaxId: 37296]}
          Length = 106

 Score = 23.1 bits (49), Expect = 3.6
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 36 NTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPII 71
          NT+I    V P   SL   I  A GC L  +P  +I
Sbjct: 30 NTLITKALVDPLTGSLPASIISAAGCAL-LVPANVI 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.146    0.488 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 284,176
Number of extensions: 10161
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 9
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.0 bits)