BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12614
(708 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 116/261 (44%), Gaps = 28/261 (10%)
Query: 27 KVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFS 86
+ I+ +A + + LAV + +++WD+ + R+ S + L+W + L S
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSWNSYILSS 215
Query: 87 GGLQGFVNEYDMR--RLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQIS--D 142
G G ++ +D+R ++ + + + C L R LA+G +N++ + +
Sbjct: 216 GSRSGHIHHHDVRVAEHHVATLSGHSQEVC-GLRWAPDGRHLASGGNDNLVNVWPSAPGE 274
Query: 143 EGLLYEKLLDRQQGRILCTAWHS-SGDYLVTGCAAA---VRVWDIHKGHAIHKMSLDKSS 198
G + + + QG + AW + L TG + +R+W++ G + ++D S
Sbjct: 275 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--SAVDAHS 332
Query: 199 KFSKNTAVWCVAFCADFTIITGDSGGFVR----FWDGKTGVQWSDVKTHKKDILALTVSE 254
+ + +W + +I+G GF + W T + +++K H +L+LT+S
Sbjct: 333 QVC--SILWSPHY---KELISGH--GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 385
Query: 255 DENYLYCAGVDPTV---VCFQ 272
D + A D T+ CF+
Sbjct: 386 DGATVASAAADETLRLWRCFE 406
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 22/177 (12%)
Query: 135 INLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAA-VRVWDIHKGHAIHKMS 193
+ L+ S +L +++ I AW G+YL G ++A V++WD+ + + M+
Sbjct: 138 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 197
Query: 194 LDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQW-SDVKTHKKDILALTV 252
S + V +++ + + + +G G + D + + + H +++ L
Sbjct: 198 -------SHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 249
Query: 253 SEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLA 309
+ D +L G D V + S P +G WV H+G VK++A
Sbjct: 250 APDGRHLASGGNDNLVNVW----------PSAPGEGG--WVPLQTFTQHQGAVKAVA 294
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 116/261 (44%), Gaps = 28/261 (10%)
Query: 27 KVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFS 86
+ I+ +A + + LAV + +++WD+ + R+ S + L+W + L S
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSWNSYILSS 204
Query: 87 GGLQGFVNEYDMR--RLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQIS--D 142
G G ++ +D+R ++ + + + C L R LA+G +N++ + +
Sbjct: 205 GSRSGHIHHHDVRVAEHHVATLSGHSQEVC-GLRWAPDGRHLASGGNDNLVNVWPSAPGE 263
Query: 143 EGLLYEKLLDRQQGRILCTAWHS-SGDYLVTGCAAA---VRVWDIHKGHAIHKMSLDKSS 198
G + + + QG + AW + L TG + +R+W++ G + ++D S
Sbjct: 264 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--SAVDAHS 321
Query: 199 KFSKNTAVWCVAFCADFTIITGDSGGFVR----FWDGKTGVQWSDVKTHKKDILALTVSE 254
+ + +W + +I+G GF + W T + +++K H +L+LT+S
Sbjct: 322 QVC--SILWSPHY---KELISGH--GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 374
Query: 255 DENYLYCAGVDPTV---VCFQ 272
D + A D T+ CF+
Sbjct: 375 DGATVASAAADETLRLWRCFE 395
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 22/177 (12%)
Query: 135 INLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAA-VRVWDIHKGHAIHKMS 193
+ L+ S +L +++ I AW G+YL G ++A V++WD+ + + M+
Sbjct: 127 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 186
Query: 194 LDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQW-SDVKTHKKDILALTV 252
S + V +++ + + + +G G + D + + + H +++ L
Sbjct: 187 -------SHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 238
Query: 253 SEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLA 309
+ D +L G D V + S P +G WV H+G VK++A
Sbjct: 239 APDGRHLASGGNDNLVNVW----------PSAPGEGG--WVPLQTFTQHQGAVKAVA 283
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 92/260 (35%), Gaps = 61/260 (23%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWF--NDRLFS 86
I + P LA D+ I IWDI E + + G I L +F D+L S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDI-ENRKIVMILQGH--EQDIYSLDYFPSGDKLVS 182
Query: 87 GGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLL 146
G V +D+R + ++ G + +AAG+
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS---------------- 226
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAV 206
LDR AVRVWD G + ++ + S +V
Sbjct: 227 ----LDR-----------------------AVRVWDSETGFLVERLDSENESGTGHKDSV 259
Query: 207 WCVAFCADF-TIITGDSGGFVRFWDGKTGVQWSDVKT------------HKKDILALTVS 253
+ V F D ++++G V+ W+ + SD KT HK +L++ +
Sbjct: 260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 319
Query: 254 EDENYLYCAGVDPTVVCFQR 273
+++ Y+ D V+ + +
Sbjct: 320 QNDEYILSGSKDRGVLFWDK 339
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 158 ILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMS-----------LDKSSKFSKNTAV 206
+ C + + G+YL TGC +V+ + G + ++S L+ SS S + +
Sbjct: 67 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 126
Query: 207 WCVAFCADFTII-TGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVD 265
V F D + TG +R WD + ++ H++DI +L + L D
Sbjct: 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 266 PTV 268
TV
Sbjct: 187 RTV 189
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 116/261 (44%), Gaps = 28/261 (10%)
Query: 27 KVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFS 86
+ I+ +A + + LAV + +++WD+ + + + S + L+W + L S
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM---TSHSARVGSLSWNSYILSS 124
Query: 87 GGLQGFVNEYDMR--RLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQIS--D 142
G G ++ +D+R ++ + + + C L R LA+G +N++ + +
Sbjct: 125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVC-GLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
Query: 143 EGLLYEKLLDRQQGRILCTAWHS-SGDYLVTGCAAA---VRVWDIHKGHAIHKMSLDKSS 198
G + + + QG + AW + L TG + +R+W++ G + ++D S
Sbjct: 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--SAVDAHS 241
Query: 199 KFSKNTAVWCVAFCADFTIITGDSGGFVR----FWDGKTGVQWSDVKTHKKDILALTVSE 254
+ + +W + +I+G GF + W T + +++K H +L+LT+S
Sbjct: 242 QVC--SILWSPHY---KELISGH--GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 294
Query: 255 DENYLYCAGVDPTV---VCFQ 272
D + A D T+ CF+
Sbjct: 295 DGATVASAAADETLRLWRCFE 315
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 26/179 (14%)
Query: 135 INLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAA-VRVWDIHKGHAIHKMS 193
+ L+ S +L +++ I AW G+YL G ++A V++WD+ + + M+
Sbjct: 47 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106
Query: 194 LDKS--SKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQW-SDVKTHKKDILAL 250
+ S N+ + + +G G + D + + + H +++ L
Sbjct: 107 SHSARVGSLSWNS----------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL 156
Query: 251 TVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLA 309
+ D +L G D V + S P +G WV H+G VK++A
Sbjct: 157 RWAPDGRHLASGGNDNLVNVW----------PSAPGEGG--WVPLQTFTQHQGAVKAVA 203
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 155 QGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD 214
QG I +W S + G A +RVWD+ + K +LDK N V VA +
Sbjct: 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL--GNQQVGVVA-TGN 309
Query: 215 FTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVS 253
II+ G + F++ + H K I ALTV+
Sbjct: 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN 348
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 155 QGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD 214
QG I +W S + G A +RVWD+ + K +LDK N V VA +
Sbjct: 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL--GNQQVGVVA-TGN 309
Query: 215 FTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVS 253
II+ G + F++ + H K I ALTV+
Sbjct: 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN 348
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 71 SNSIECLTWFNDRLF-SGGL-QGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAA 128
S + + W +D F S GL G V+ YD+ + A CLS ++ +L++
Sbjct: 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR--HVLSS 191
Query: 129 GTEQG--HINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHK 185
G+ G H + +I++ + L + AW S G L +G V++WD
Sbjct: 192 GSRSGAIHHHDVRIANHQI---GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA-- 246
Query: 186 GHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGF----VRFWDGKTGVQ 236
+ S+ K +K + N AV VA+C + + GG + FW+ TG +
Sbjct: 247 -----RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR 296
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 10/159 (6%)
Query: 40 RLAVSRADQSIEIWDI-SETPHVDRVFIGDPLSNSIECLTWFNDRLFSGGLQ-----GFV 93
+LA D ++IWD S P + + C W ++ L +GG F
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC-PWQSNLLATGGGTMDKQIHFW 289
Query: 94 NEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDR 153
N R+N + + + W S H K+ + G +++++ S GL + +
Sbjct: 290 NAATGARVNTVDAGSQVTSLIW--SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347
Query: 154 QQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHK 191
R+L +A G L T + ++ W ++ G + +
Sbjct: 348 HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 107 TAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGL---LYEKL--LDRQQGRILCT 161
TA WC ++A+G+E + +++I D GL L E + L+ R+
Sbjct: 81 TAPVLDIAWC---PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 162 AWHSSGD--YLVTGCAAAVRVWDIHKGHAIHKMSLD------KSSKFSKNTAVWCVAFCA 213
AWH + L GC + VWD+ G A+ + D S +S++ A+ C + C
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS-CR 196
Query: 214 D 214
D
Sbjct: 197 D 197
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 23/210 (10%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFSGG 88
+ C+ K R+ D ++ +WDI ET V +G + + C+ + R+ SG
Sbjct: 202 VRCMHLHEK--RVVSGSRDATLRVWDI-ETGQCLHVLMGHVAA--VRCVQYDGRRVVSGA 256
Query: 89 LQGFVNEYDMRRLNIKSSTAVTSGTCWCL---SVHKKKRLLAAGTEQGHINLFQISDEGL 145
V +D + + + L +H + +G+ I ++ + + G
Sbjct: 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH-----VVSGSLDTSIRVWDV-ETGN 310
Query: 146 LYEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNT 204
L Q L + + LV+G A + V++WDI G + + +
Sbjct: 311 CIHTLTGHQS---LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ----GPNKHQS 363
Query: 205 AVWCVAFCADFTIITGDSGGFVRFWDGKTG 234
AV C+ F +F I + D G V+ WD KTG
Sbjct: 364 AVTCLQFNKNFVITSSDDG-TVKLWDLKTG 392
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 86 SGGLQGFVNEYDMRRLNIKSSTAVTSG--TCWCLSVHKKKRLLAAGTEQGHINLFQISDE 143
S L + +D+ N K ++ +G W L+ + LA GT G +N+F + E
Sbjct: 97 SSSLDAHIRLWDLE--NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV--E 152
Query: 144 GLLYEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKM 192
E LD + IL A+ G YL +G + ++DI G +H +
Sbjct: 153 SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 177 AVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADF---TIITGDSGGFVRFWDGKT 233
A+RVW++ KG +H +S + + V CV F I++G V+ WD T
Sbjct: 132 ALRVWNV-KGECMHTLSRGAHTDW-----VSCVRFSPSLDAPVIVSGGWDNLVKVWDLAT 185
Query: 234 GVQWSDVKTHKKDILALTVSEDENYLYCAGVD 265
G +D+K H + ++TVS D + CA D
Sbjct: 186 GRLVTDLKGHTNYVTSVTVSPDGS--LCASSD 215
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%)
Query: 36 PKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFSGGLQGFVNE 95
P +++A + AD++I+IW+++ + +G + + + W L S GF+N
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308
Query: 96 YDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQIS 141
+ +I + LS + L + +GHIN + IS
Sbjct: 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 9/127 (7%)
Query: 503 SLVQMSECKQYIVCADRKSHVVIWKNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHR 562
S V +S KQ++ + S V ++K L +HP T V ++
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYK-------LSGASVSEVKTIVHPAEITSVAFSNNGA 504
Query: 563 -IVEFDLNRKAFT-TFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVIN 620
+V D +RK + + E H N W V + + P + L D+++ V N
Sbjct: 505 FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
Query: 621 KNKSLAH 627
NK H
Sbjct: 565 MNKPSDH 571
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND 82
+ C++ P + RLA D S+ +W++++ + G +S+ + W N+
Sbjct: 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 592
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
Query: 94 NEYDMRRLNIKSSTAVTSGTCWCLSVHKKK---RLLAAGTEQGHINLFQISDEGLLYEKL 150
N M+ + + SS + G CLS L AG+ + +++ D G K
Sbjct: 25 NHNPMKDIEVTSSPDDSIG---CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA 81
Query: 151 LDRQQGRILCTAWHSSGDYLVTG-CAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCV 209
G +L W G + T C ++WD+ AI D K T W
Sbjct: 82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK----TIHWIK 137
Query: 210 AFCADFT-IITGDSGGFVRFWDGKT 233
A +++ ++TG ++FWD ++
Sbjct: 138 A--PNYSCVMTGSWDKTLKFWDTRS 160
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 13/122 (10%)
Query: 505 VQMSECKQYIVCADRKSHVVIW-KNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRI 563
V S Q I A V +W +NGQ +L + +A P T+ + D +
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 564 VEFDLNRKAFTTFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVINKNK 623
++ N + T T H + V G+ F P D ++ DD + + N+N
Sbjct: 410 KLWNRNGQLLQTL-----TGHSSS-------VWGVAFSPDDQTIASASDDKTVKLWNRNG 457
Query: 624 SL 625
L
Sbjct: 458 QL 459
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 13/122 (10%)
Query: 505 VQMSECKQYIVCADRKSHVVIW-KNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRI 563
V S Q I A V +W +NGQ +L + +A P T+ + D +
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 564 VEFDLNRKAFTTFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVINKNK 623
++ N + T T H + V G+ F P ++ DD + + N+N
Sbjct: 123 KLWNRNGQLLQTL-----TGHSSS-------VWGVAFSPDGQTIASASDDKTVKLWNRNG 170
Query: 624 SL 625
L
Sbjct: 171 QL 172
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 505 VQMSECKQYIVCADRKSHVVIW-KNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRI 563
V S Q I A V +W +NGQ +L + +A P T+ + D +
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 564 VEFDLNRKAFTTFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVINKN 622
++ N + T T H + V G+ F P ++ DD + + N+N
Sbjct: 287 KLWNRNGQLLQTL-----TGHSSS-------VWGVAFSPDGQTIASASDDKTVKLWNRN 333
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 13/122 (10%)
Query: 505 VQMSECKQYIVCADRKSHVVIW-KNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRI 563
V S Q I A V +W +NGQ +L + +A P T+ + D +
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 491
Query: 564 VEFDLNRKAFTTFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVINKNK 623
++ N + T T H + V G+ F P ++ DD + + N+N
Sbjct: 492 KLWNRNGQLLQTL-----TGHSSS-------VRGVAFSPDGQTIASASDDKTVKLWNRNG 539
Query: 624 SL 625
L
Sbjct: 540 QL 541
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 13/122 (10%)
Query: 505 VQMSECKQYIVCADRKSHVVIW-KNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRI 563
V S Q I A V +W +NGQ +L + +A P T+ + D +
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163
Query: 564 VEFDLNRKAFTTFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVINKNK 623
++ N + T T H + V G+ F P ++ DD + + N+N
Sbjct: 164 KLWNRNGQLLQTL-----TGHSSS-------VWGVAFSPDGQTIASASDDKTVKLWNRNG 211
Query: 624 SL 625
L
Sbjct: 212 QL 213
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 13/122 (10%)
Query: 505 VQMSECKQYIVCADRKSHVVIW-KNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRI 563
V S Q I A V +W +NGQ +L + +A P T+ + D +
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81
Query: 564 VEFDLNRKAFTTFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVINKNK 623
++ N + T T H + V G+ F P ++ DD + + N+N
Sbjct: 82 KLWNRNGQLLQTL-----TGHSSS-------VRGVAFSPDGQTIASASDDKTVKLWNRNG 129
Query: 624 SL 625
L
Sbjct: 130 QL 131
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 13/122 (10%)
Query: 505 VQMSECKQYIVCADRKSHVVIW-KNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRI 563
V S Q I A V +W +NGQ +L + +A P T+ + D +
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 204
Query: 564 VEFDLNRKAFTTFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVINKNK 623
++ N + T T H + V G+ F P ++ DD + + N+N
Sbjct: 205 KLWNRNGQLLQTL-----TGHSSS-------VRGVAFSPDGQTIASASDDKTVKLWNRNG 252
Query: 624 SL 625
L
Sbjct: 253 QL 254
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 13/122 (10%)
Query: 505 VQMSECKQYIVCADRKSHVVIW-KNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRI 563
V S Q I A V +W +NGQ +L + +A P T+ + D +
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450
Query: 564 VEFDLNRKAFTTFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVINKNK 623
++ N + T T H + V G+ F P ++ DD + + N+N
Sbjct: 451 KLWNRNGQLLQTL-----TGHSSS-------VRGVAFSPDGQTIASASDDKTVKLWNRNG 498
Query: 624 SL 625
L
Sbjct: 499 QL 500
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 62/307 (20%), Positives = 120/307 (39%), Gaps = 32/307 (10%)
Query: 23 APEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND 82
A E +V+ C A S +A AD+ ++IWD S T + + D S + C + N
Sbjct: 655 AHEDEVL-CCAFSSDDSYIATCSADKKVKIWD-SATGKLVHTY--DEHSEQVNCCHFTNK 710
Query: 83 R----LFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLF 138
L +G F+ +D+ + +++ + + LLA+ + G + L+
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Query: 139 QISDEG-----------LLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGH 187
+ L E + + + C +W + GD ++ V ++DIH
Sbjct: 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830
Query: 188 AIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDI 247
+ ++ S T +C D + S V W+ + ++ +D + H +
Sbjct: 831 LLAEIHTGHHS-----TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV 885
Query: 248 LALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKS 307
+ S D + A D T+ ++ T+K VC S + V + ++ V E +
Sbjct: 886 HGVMFSPDGSSFLTASDDQTIRVWE-TKK--VCKNS-----AIVLKQEIDVVFQENETMV 937
Query: 308 LALHGNR 314
LA+ R
Sbjct: 938 LAVDNIR 944
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 9/232 (3%)
Query: 27 KVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFS 86
K + I L S D I++W+ D VF+ + + RL S
Sbjct: 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTG---DYVFLQAHQETVKDFRLLQDSRLLS 1060
Query: 87 GGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLL 146
G V +++ I+ GT ++ ++ + ++ L
Sbjct: 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+E L G + C+A+ G L TG +R+W++ G +H + + +
Sbjct: 1121 HE--LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHG 1178
Query: 206 VWC--VAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSED 255
W V F D + +GG++++W+ TG T+ ++ + VS D
Sbjct: 1179 GWVTDVCFSPDSKTLVS-AGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPD 1229
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 62/307 (20%), Positives = 120/307 (39%), Gaps = 32/307 (10%)
Query: 23 APEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND 82
A E +V+ C A S +A AD+ ++IWD S T + + D S + C + N
Sbjct: 662 AHEDEVL-CCAFSSDDSYIATCSADKKVKIWD-SATGKLVHTY--DEHSEQVNCCHFTNK 717
Query: 83 R----LFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLF 138
L +G F+ +D+ + +++ + + LLA+ + G + L+
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Query: 139 QISDEG-----------LLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGH 187
+ L E + + + C +W + GD ++ V ++DIH
Sbjct: 778 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 837
Query: 188 AIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDI 247
+ ++ S T +C D + S V W+ + ++ +D + H +
Sbjct: 838 LLAEIHTGHHS-----TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV 892
Query: 248 LALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKS 307
+ S D + A D T+ ++ T+K VC S + V + ++ V E +
Sbjct: 893 HGVMFSPDGSSFLTASDDQTIRVWE-TKK--VCKNS-----AIVLKQEIDVVFQENETMV 944
Query: 308 LALHGNR 314
LA+ R
Sbjct: 945 LAVDNIR 951
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 9/232 (3%)
Query: 27 KVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFS 86
K + I L S D I++W+ D VF+ + + RL S
Sbjct: 1011 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTG---DYVFLQAHQETVKDFRLLQDSRLLS 1067
Query: 87 GGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLL 146
G V +++ I+ GT ++ ++ + ++ L
Sbjct: 1068 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1127
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+E L G + C+A+ G L TG +R+W++ G +H + + +
Sbjct: 1128 HE--LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHG 1185
Query: 206 VWC--VAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSED 255
W V F D + +GG++++W+ TG T+ ++ + VS D
Sbjct: 1186 GWVTDVCFSPDSKTLVS-AGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPD 1236
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 458 VLISADSTLLLAVSLNGPLYIIDLSSL-EIKYCVDPYKS--NLMSDVISLVQMSECKQYI 514
+ I+ D T ++ G +Y ID++S+ E K+ +P ++++DV L++ S+ Q+I
Sbjct: 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDV-HLIKDSDGHQFI 213
Query: 515 VCADRKSHVVI 525
+ +DR H+ I
Sbjct: 214 ITSDRDEHIKI 224
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 112
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG+ + H + A+ + D + +
Sbjct: 113 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 261 CAGVD 265
+ D
Sbjct: 169 SSSYD 173
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 77/214 (35%), Gaps = 54/214 (25%)
Query: 23 APEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND 82
A K ++ + P LA S AD+ I+IW + ++ G L I + W +D
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GISDVAWSSD 79
Query: 83 RLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISD 142
V+ D + L I V+SG C T +GH N
Sbjct: 80 SNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHSNY----- 112
Query: 143 EGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSLDKSSKFS 201
+ C ++ + +V+G +VR+WD+ G + + +
Sbjct: 113 ---------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP-------A 150
Query: 202 KNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ V V F D ++I S G R WD +G
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 112
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG+ + H + A+ + D + +
Sbjct: 113 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 261 CAGVD 265
+ D
Sbjct: 169 SSSYD 173
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 77/214 (35%), Gaps = 54/214 (25%)
Query: 23 APEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND 82
A K ++ + P LA S AD+ I+IW + ++ G L I + W +D
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GISDVAWSSD 79
Query: 83 RLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISD 142
V+ D + L I V+SG C T +GH N
Sbjct: 80 SNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHSNY----- 112
Query: 143 EGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSLDKSSKFS 201
+ C ++ + +V+G +VR+WD+ G + + +
Sbjct: 113 ---------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP-------A 150
Query: 202 KNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ V V F D ++I S G R WD +G
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 81 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 133
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 134 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 189
Query: 261 CAGVD 265
+ D
Sbjct: 190 SSSYD 194
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 93
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 94 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 131
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 132 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 170
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 171 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 79 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 131
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 132 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 187
Query: 261 CAGVD 265
+ D
Sbjct: 188 SSSYD 192
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 91
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 92 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 129
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 130 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 168
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 169 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 115
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 116 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 261 CAGVD 265
+ D
Sbjct: 172 SSSYD 176
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 75
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 76 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 113
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 114 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 152
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 153 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 115
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 116 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 261 CAGVD 265
+ D
Sbjct: 172 SSSYD 176
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 75
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 76 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 113
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 114 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 152
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 153 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 109
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 110 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165
Query: 261 CAGVD 265
+ D
Sbjct: 166 SSSYD 170
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 69
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 70 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 107
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 108 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 146
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 147 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 53 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 105
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 106 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 161
Query: 261 CAGVD 265
+ D
Sbjct: 162 SSSYD 166
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 65
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 66 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 103
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 104 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 142
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 143 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 74 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 126
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 127 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 182
Query: 261 CAGVD 265
+ D
Sbjct: 183 SSSYD 187
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 86
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 87 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 124
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 125 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 163
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 164 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 58 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 110
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 111 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 166
Query: 261 CAGVD 265
+ D
Sbjct: 167 SSSYD 171
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 70
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 71 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 108
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 109 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 147
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 148 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 109
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 110 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165
Query: 261 CAGVD 265
+ D
Sbjct: 166 SSSYD 170
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 69
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 70 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 107
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 108 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 146
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 147 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 56 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 108
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 109 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 164
Query: 261 CAGVD 265
+ D
Sbjct: 165 SSSYD 169
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 68
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 69 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 106
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 107 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 145
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 146 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 62 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 114
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 115 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 170
Query: 261 CAGVD 265
+ D
Sbjct: 171 SSSYD 175
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 74
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 75 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 112
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 113 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 151
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 152 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 115
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 116 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 261 CAGVD 265
+ D
Sbjct: 172 SSSYD 176
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKL--GIS 75
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 76 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 113
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 114 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 152
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 153 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 112
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 113 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 261 CAGVD 265
+ D
Sbjct: 169 SSSYD 173
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKL--GIS 72
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 73 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 110
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 111 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 149
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 150 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
+EK + + I AW S + LV+ +++WD+ G + +L S +
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNY----- 112
Query: 206 VWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLY 260
FC +F I++G VR WD KTG + H + A+ + D + +
Sbjct: 113 ----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 261 CAGVD 265
+ D
Sbjct: 169 SSSYD 173
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKL--GIS 72
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 73 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 110
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 111 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 149
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 150 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 19/146 (13%)
Query: 126 LAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIH 184
LAA + I ++ D +EK + + I AW S + LV+ +++WD+
Sbjct: 41 LAASSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 98
Query: 185 KGHAIHKMSLDKSSKFSKNTAVWCVAFCADFT-----IITGDSGGFVRFWDGKTGVQWSD 239
G + +L S + FC +F I++G VR WD KTG
Sbjct: 99 SGKCLK--TLKGHSNY---------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 240 VKTHKKDILALTVSEDENYLYCAGVD 265
+ H + A+ + D + + + D
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYD 173
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 17 HNIKF-YAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIE 75
+ +KF A K ++ + P LA S AD+ I+IW + ++ G L I
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYD-GKFEKTISGHKL--GIS 72
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
+ W +D V+ D + L I V+SG C T +GH
Sbjct: 73 DVAWSSDSNL------LVSASDDKTLKIWD---VSSGKC-------------LKTLKGHS 110
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMSL 194
N + C ++ + +V+G +VR+WD+ G + +
Sbjct: 111 NY--------------------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 149
Query: 195 DKSSKFSKNTAVWCVAFCADFTIITGDS-GGFVRFWDGKTG 234
+ + V V F D ++I S G R WD +G
Sbjct: 150 ------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 218 ITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKP 277
++G G +R WD TG H KD+L++ S D + D T+ +
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL--- 158
Query: 278 QVCSTSGPEQGSSVWVRSV 296
VC + ++ S WV V
Sbjct: 159 GVCKYTVQDESHSEWVSCV 177
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 18/151 (11%)
Query: 119 VHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAV 178
V K L+A GT + L + + +L + IL +W DY++ +A
Sbjct: 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSH--ILQGHRQEILAVSWSPRYDYILATASADS 209
Query: 179 RV--WDIHKG---------HAIHKMSLDKSSKFSKNTAVWCVAFCAD-FTIITGDSGGFV 226
RV WD+ + H K +S+ + N V + F +D ++T + +
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 227 RFWDGKTG----VQWSDVKTHKKDILALTVS 253
R W+ G V + V + K L TVS
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVS 300
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 218 ITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKP 277
++G G +R WD TG H KD+L++ S D + D T+ +
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL--- 135
Query: 278 QVCSTSGPEQGSSVWVRSV 296
VC + ++ S WV V
Sbjct: 136 GVCKYTVQDESHSEWVSCV 154
>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
Length = 343
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 120 HKKKRLLAAGTEQGHINLFQI-SDEGLLYEK 149
H K L+AAG + HI++++I ++GLL+EK
Sbjct: 286 HSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 316
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 156 GRILCTAWHSSGDYLVTGC-AAAVRVWDIHKGHAIHKMS-LDKSSKFSKNTAVWCVAFCA 213
G + C+A+ L TG +R+W++ G +H + L + + V + F
Sbjct: 1134 GCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSP 1193
Query: 214 DFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSED 255
D ++ +GG++++W+ TG T+ ++ + VS D
Sbjct: 1194 DGKMLIS-AGGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPD 1234
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 218 ITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKP 277
++G G +R WD GV H KD+L++ S D + A D T+ + +
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505
Query: 278 QVCSTSGPEQGSSVWVRSV 296
+ + G E G WV V
Sbjct: 506 KYTISEGGE-GHRDWVSCV 523
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 22/126 (17%)
Query: 166 SGDYLVTGCAAAVRVWDIH------KGHAIHKMSLDKSSKFSKNTAVW----CVAFCADF 215
SG Y++T +V+VWD++ + + +H+ K +N ++ C +D
Sbjct: 296 SGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS 355
Query: 216 TIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTR 275
++TG F R +D T K+DI L S + N + P VC R
Sbjct: 356 VVMTGSYNNFFRMFDRNT----------KRDI-TLEASRENNKPRTV-LKPRKVCASGKR 403
Query: 276 KPQVCS 281
K S
Sbjct: 404 KKDEIS 409
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 32 IACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND--RLFSGGL 89
+A P S +D +I +WD+ V R F G ++ C+ ND +L++GGL
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLV-RQFQGH--TDGASCIDISNDGTKLWTGGL 203
Query: 90 QGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQIS 141
V +D+R TS + L LA G E ++ + ++
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVN 254
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 168 DYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFV 226
+Y++TG +RV+D +I+K L + S + VW + + +++G + V
Sbjct: 133 NYVITGADDKMIRVYD-----SINKKFLLQLS--GHDGGVWALKYAHGGILVSGSTDRTV 185
Query: 227 RFWDGKTGVQWSDVKTHKKDILALTVSEDEN--YLYCAGVDPTVVCFQRTRKPQVCSTSG 284
R WD K G + H + L + E +N Y+ D T+ ++ ++ V
Sbjct: 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV----- 240
Query: 285 PEQG 288
P+ G
Sbjct: 241 PDHG 244
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 168 DYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFV 226
+Y++TG +RV+D +I+K L + S + VW + + +++G + V
Sbjct: 133 NYVITGADDKXIRVYD-----SINKKFLLQLS--GHDGGVWALKYAHGGILVSGSTDRTV 185
Query: 227 RFWDGKTGVQWSDVKTHKKDILALTVSEDEN--YLYCAGVDPTVVCFQRTRKPQVCSTSG 284
R WD K G + H + L + E +N Y+ D T+ ++ ++ V
Sbjct: 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV----- 240
Query: 285 PEQG 288
P+ G
Sbjct: 241 PDHG 244
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 458 VLISADSTLLLAVSLNGPLY----------IIDLSSLEIKYCVDPYKSNLMSDVISLVQM 507
V ++A + A+ NG +Y I+ +IK P+K S ++VQ+
Sbjct: 151 VQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKY-NIVQL 209
Query: 508 SECKQYIVCADRKSHVVIWKNGQHH 532
+ K +I+ D + V W NGQ +
Sbjct: 210 APGKDHILFLDEEGMVFAWGNGQQN 234
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 23/143 (16%)
Query: 47 DQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND--RLFSGGLQGFVNEYDMRR---- 100
D ++ +WD+ T R + G I + +F D R +G G +DMR
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHE--GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284
Query: 101 --------LNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQ--ISDEGLLYEKL 150
N VTS ++ RLL AG G ++ +++ L L
Sbjct: 285 QVYNREPDRNDNELPIVTS-----VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339
Query: 151 LDRQQGRILCTAWHSSGDYLVTG 173
+ +GRI C S G L TG
Sbjct: 340 QNSHEGRISCLGLSSDGSALCTG 362
>pdb|1A79|A Chain A, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
pdb|1A79|B Chain B, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
pdb|1A79|C Chain C, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
pdb|1A79|D Chain D, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
Length = 171
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 467 LLAVSLNGPLYIIDLSSLEIKYCVD-PYKSNLMSDVISLVQMSECKQYIVCADRKSHVVI 525
L++SL LY+I+L LE+KY + P + + V+ C +Y+V D ++ I
Sbjct: 34 FLSLSLVEALYLINLGWLEVKYKDNKPLSFEELYEYARNVEERLCLKYLVYKDLRTRGYI 93
Query: 526 WKNGQHHAS 534
K G + +
Sbjct: 94 VKTGLKYGA 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,586,307
Number of Sequences: 62578
Number of extensions: 810204
Number of successful extensions: 2151
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1952
Number of HSP's gapped (non-prelim): 201
length of query: 708
length of database: 14,973,337
effective HSP length: 106
effective length of query: 602
effective length of database: 8,340,069
effective search space: 5020721538
effective search space used: 5020721538
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)