RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12614
(708 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 95.9 bits (239), Expect = 8e-22
Identities = 59/302 (19%), Positives = 109/302 (36%), Gaps = 34/302 (11%)
Query: 26 PKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND--R 83
+ C+A P LA D +I++WD+ ET + R G + + + D
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDL-ETGELLRTLKG--HTGPVRDVAASADGTY 65
Query: 84 LFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDE 143
L SG + +D+ + + ++ R+L++ + I ++ +
Sbjct: 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125
Query: 144 GLLYEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSK 202
L L + A+ G ++ + +++WD+ G + ++
Sbjct: 126 KCLTT--LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE---- 179
Query: 203 NTAVWCVAFCAD-FTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYC 261
V VAF D +++ S G ++ WD TG ++ H+ + ++ S D L
Sbjct: 180 ---VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236
Query: 262 AGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALH--GNRLYSGG 319
D T+ + V + SG H V SLA G RL SG
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSG----------------HTNSVTSLAWSPDGKRLASGS 280
Query: 320 LD 321
D
Sbjct: 281 AD 282
Score = 87.8 bits (218), Expect = 5e-19
Identities = 46/244 (18%), Positives = 94/244 (38%), Gaps = 16/244 (6%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDR--LFS 86
+ +A + LA +D++I +WD+ ET R G ++ + + + D L S
Sbjct: 54 VRDVAASADGTYLASGSSDKTIRLWDL-ETGECVRTLTGH--TSYVSSVAFSPDGRILSS 110
Query: 87 GGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLL 146
+ +D+ ++ + ++ +A+ ++ G I L+ + +
Sbjct: 111 SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTA 205
L G + A+ G+ L++ + +++WD+ G + +
Sbjct: 171 --ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-------GHENG 221
Query: 206 VWCVAFCADFTIIT-GDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGV 264
V VAF D ++ G G +R WD +TG + H + +L S D L
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281
Query: 265 DPTV 268
D T+
Sbjct: 282 DGTI 285
Score = 68.9 bits (169), Expect = 1e-12
Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 27/175 (15%)
Query: 156 GRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD 214
G + C A+ G L TG ++VWD+ G + + V VA AD
Sbjct: 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-------VRDVAASAD 62
Query: 215 FT-IITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQR 273
T + +G S +R WD +TG + H + ++ S D L + D T+ +
Sbjct: 63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122
Query: 274 TRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNR--LYSGGLDSYLSL 326
+ + G H V S+A + + S D + L
Sbjct: 123 ETGKCLTTLRG----------------HTDWVNSVAFSPDGTFVASSSQDGTIKL 161
Score = 47.7 bits (114), Expect = 1e-05
Identities = 63/329 (19%), Positives = 108/329 (32%), Gaps = 53/329 (16%)
Query: 240 VKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRV 299
+K H + + S D L D T+ +V E ++
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTI---------KVWDLETGELLRTLKG------ 49
Query: 300 IHEGDVKSLAL--HGNRLYSGGLDSYLSLSYYPPKTLVKYPCTLAQSTPVSLAKDIQHVL 357
H G V+ +A G L SG D + L + +T TL T + V
Sbjct: 50 -HTGPVRDVAASADGTYLASGSSDKTIRL--WDLETGEC-VRTLTGHT-----SYVSSV- 99
Query: 358 LQYTSHLELWSLGSAQSTDLSSHSNTTGVPLLSFPRLIVKMSAVNNATIRCSVVSNDGKY 417
++ + S S T + TG L + + + S DG +
Sbjct: 100 -AFSPDGRILSSSSRDKT-IKVWDVETGKCLTTLR--------GHTDWVNSVAFSPDGTF 149
Query: 418 VAY-STESCVRLHSLDLDGDKPQISRIKNLPAPLFKSIFTHVLISADSTLLLAVSLNGPL 476
VA S + ++L L + L V S D LL+ S +G +
Sbjct: 150 VASSSQDGTIKLWDLR------TGKCVATLTG--HTGEVNSVAFSPDGEKLLSSSSDGTI 201
Query: 477 YIIDLSSLEIKYCVDPYKSNLMSDVISLVQMSECKQYIVCADRKSHVVIW--KNGQHHAS 534
+ DLS+ + C+ + + V S V S + + +W + G+ +
Sbjct: 202 KLWDLSTGK---CLGTLRGHENG-VNS-VAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256
Query: 535 LPRYRKPSTAMAIHPTLSTLVTVYSDHRI 563
L + T++A P L + +D I
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTI 285
Score = 47.3 bits (113), Expect = 1e-05
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDR--LFS 86
+N +A P +L S +D +I++WD+S + G N + + + D L S
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL-GTLRGH--ENGVNSVAFSPDGYLLAS 236
Query: 87 GGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQ 139
G G + +D+R + + + + L+ + LA+G+ G I ++
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 77.4 bits (189), Expect = 6e-15
Identities = 77/431 (17%), Positives = 142/431 (32%), Gaps = 50/431 (11%)
Query: 4 MCKKRNTMGTYGVHNIKFYAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDR 63
+ +++ + + I IA P L +D +I++WD+ + +
Sbjct: 43 LALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK 102
Query: 64 VFIGDPLSNSIECLTWFNDR----LFSGGLQGFVNEYDMRRLNIKSSTAVT-SGTCWCLS 118
G S+ + D L S L G V +D+ T S + L+
Sbjct: 103 SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLA 162
Query: 119 VHKKKRLLAAGTEQ-GHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAA- 176
+LLA+G+ G I L+ + L L + A+ G L+ ++
Sbjct: 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPL--STLAGHTDPVSSLAFSPDGGLLIASGSSD 220
Query: 177 -AVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADF-TIITGDSGGFVRFWDGKTG 234
+R+WD+ G + S S ++ +F D + +G S G +R WD ++
Sbjct: 221 GTIRLWDLSTGKLLR-------STLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS 273
Query: 235 VQWSDVKT-HKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWV 293
+ H +L++ S D L D TV + + S +
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT---------- 323
Query: 294 RSVNRVIHEGDVKSLALHGNRLYSGGLDSYLSLSYYPPKTLVKYPCTLAQSTPVSLAKDI 353
HEG V SL+ + S L T+ + +
Sbjct: 324 ----LKGHEGPVSSLSFSPD-------GSLLVSGGSDDGTIRLWDLRTGKPL-------- 364
Query: 354 QHVLLQYTSHLELWSLGSAQSTDLSSHSNTTGVPLLSFPRLIVKMSAVNNATIRCSVVSN 413
L +++ L + + S T + LS L+ + + + S
Sbjct: 365 -KTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS-RVTSLDFSP 422
Query: 414 DGKYVAYSTES 424
DGK +A +
Sbjct: 423 DGKSLASGSSD 433
Score = 54.7 bits (130), Expect = 9e-08
Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 19/218 (8%)
Query: 30 NCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND--RLFSG 87
+ P S LA +D +I +WD+ + + R G S+S+ + + D L SG
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLASG 302
Query: 88 GLQGFVNEYDMRRLNIKSSTAVTS--GTCWCLSVHKK-KRLLAAGTEQGHINLFQISDEG 144
G V +D+ + SS + G LS L++ G++ G I L+ +
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG- 361
Query: 145 LLYEKLLDRQQGRILCTAWHSSGDYLVTGCAA-AVRVWDIHKGHAIHKMSLDKSSKFSKN 203
+L ++ G + +G VR+WD+ G + + S
Sbjct: 362 --KPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR----- 414
Query: 204 TAVWCVAFCAD-FTIITGDSGGFVRFWDGKTGVQWSDV 240
V + F D ++ +G S +R WD KT ++
Sbjct: 415 --VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 30.0 bits (68), Expect = 0.28
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 151 LDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWD 182
L G + A+ G YL +G +++WD
Sbjct: 8 LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 28.4 bits (64), Expect = 1.1
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 205 AVWCVAFCADFT-IITGDSGGFVRFWD 230
V VAF D + +G G ++ WD
Sbjct: 14 PVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 25.7 bits (57), Expect = 8.8
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWD 54
+ +A P LA D +I++WD
Sbjct: 15 VTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 30.0 bits (68), Expect = 0.28
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 155 QGRILCTAWHSSGDYLVTGCA-AAVRVWD 182
G + A+ G+ L +G VRVWD
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 27.3 bits (61), Expect = 2.9
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 205 AVWCVAFCADFT-IITGDSGGFVRFWD 230
V VAF D + +G G VR WD
Sbjct: 13 PVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 26.2 bits (58), Expect = 6.4
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWD 54
+ +A P + LA D ++ +WD
Sbjct: 14 VTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 26.2 bits (58), Expect = 7.2
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 241 KTHKKDILALTVSEDENYLYCAGVDPTV 268
K H + ++ S D N L D TV
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTV 35
>gnl|CDD|200560 cd10934, CE4_cadherin_MopE_like_N, N-terminal Putative NodB-like
catalytic domain of hypothetical proteins containing
C-terminal cadherin or MopE copper binding domains. The
family includes several cadherin or MopE copper binding
domain containing hypothetical proteins found in
bacteria. Cadherins are glycoproteins involved in
Ca2+-mediated cell-cell adhesion. The cadherin domains
occur as repeats in the extracellular regions which are
thought to mediate cell-cell contact when bound to
calcium. They play a role in cell fate, signalling,
proliferation, differentiation, and migration. The
copper binding domain involves a tryptophan metabolite,
kynurenine, in the protein MopE. Members of this family
contain an additional conserved domain, which is
N-terminally fused to the cadherin domain or the MopE
copper binding domain. Although its function remains
unclear, the conserved domain exhibits a seven-stranded
barrel with a detectable sequence similarity to the
six-stranded barrel rhizobial NodB-like proteins, which
remove N-linked or O-linked acetyl groups from cell wall
polysaccharides and belong to the larger carbohydrate
esterase 4 (CE4) superfamily.
Length = 267
Score = 33.6 bits (77), Expect = 0.30
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 41 LAVSRAD--QSIEIWD-ISETPHVDRVFIGDPLSNSIECLTWFNDRLFSGGLQGFVNEYD 97
+ SR D QS EI D + E P I D L +E W ND FV Y
Sbjct: 5 IFASRNDMDQSQEIDDVVDENPG-----IYDALLPILE--QWKND-------YNFVGSY- 49
Query: 98 MRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQG 133
+NI ++ T W +S+ + +LA G E G
Sbjct: 50 --YVNIGNNPPQGQYTDWSVSLPYYQAMLALGNEIG 83
>gnl|CDD|224661 COG1747, COG1747, Uncharacterized N-terminal domain of the
transcription elongation factor GreA [Function unknown].
Length = 711
Score = 33.0 bits (75), Expect = 0.69
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 600 FDPQDSSLIYLMDDSALCVINKNKSLAHAD 629
FD D + + SALC + +N S +
Sbjct: 615 FDSDDKETVRMSLGSALCAMPQNASTSSKR 644
>gnl|CDD|219469 pfam07569, Hira, TUP1-like enhancer of split. The Hira proteins
are found in a range of eukaryotes and are implicated in
the assembly of repressive chromatin. These proteins
also contain pfam00400.
Length = 214
Score = 31.5 bits (72), Expect = 1.2
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 164 HSSGDYL--VTGCAAAVRVWDIHKGHAIHK 191
S+G YL +T + VW++ AI
Sbjct: 19 ESNGSYLLCIT-SVGLLYVWNVKTKKAILP 47
>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain. This domain contains several
repeats of the PQQ repeat.
Length = 234
Score = 30.4 bits (69), Expect = 2.2
Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 19/105 (18%)
Query: 222 SGGFVRFWDGKTG-VQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVC 280
+ G V D TG V W L V+ D LY A +V
Sbjct: 1 ADGVVAALDAATGKVLWR--VDLGGTALGGGVAVDGGRLYVATGKGELVALD-------- 50
Query: 281 STSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDSYLS 325
G +W + ++ I + + + G + D L
Sbjct: 51 ----AATGKLLWRKDLSGEI----LGAPTVAGGVVVVVTADGSLY 87
>gnl|CDD|182468 PRK10446, PRK10446, ribosomal protein S6 modification protein;
Provisional.
Length = 300
Score = 29.9 bits (67), Expect = 4.2
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 23/129 (17%)
Query: 510 CKQYIVCADRKSHVV-------IWKNGQHHASLPRY--RKPSTAMAIHPTLSTLVTVYSD 560
CK+ A ++ H+V + N AS Y RK A+ P + T +T Y
Sbjct: 15 CKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGT 74
Query: 561 HRIVEFD------LNRKAFTTFSR-KLETNHPNEWLSRQ---LPVLGIEFDPQDSS-LIY 609
+ +F+ LN +R KL + L+RQ LPV GI P D+S LI
Sbjct: 75 AALRQFEMLGSYPLNESVAIARARDKL---RSMQLLARQGIDLPVTGIAHSPDDTSDLID 131
Query: 610 LMDDSALCV 618
++ + L V
Sbjct: 132 MVGGAPLVV 140
>gnl|CDD|221882 pfam12984, DUF3868, Domain of unknown function, B. Theta Gene
description (DUF3868). Based on Bacteroides
thetaiotaomicron gene BT_1065, a putative
uncharacterized protein As seen in gene expression
experiments
(http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22
31), It appears to be upregulated in the presence of
host or other bacterial species vs when in culture.
Length = 115
Score = 28.5 bits (64), Expect = 4.7
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 22/97 (22%)
Query: 426 VRLHSLDLDGDKPQISRIKNLPAPLFKS----IFTHVLISADSTLLLA-VSLNGPLYIID 480
V +SL+ GD ++ +L KS T VL+SA S LLL + L G
Sbjct: 32 VVPNSLEQKGDSVYLNMDIDLSGVKVKSRQSVDLTPVLVSASSKLLLPSIVLKGR----- 86
Query: 481 LSSLEIKYCVDPYKSN--LMSDVISLVQMSECKQYIV 515
+Y V Y+ LMS + S Y+V
Sbjct: 87 -----NEYKV--YERELALMSAR---EKASYEAPYLV 113
>gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain. This model
includes the terminal domain from the fungal alpha
aminoadipate reductase enzyme (also known as
aminoadipate semialdehyde dehydrogenase) which is
involved in the biosynthesis of lysine , as well as the
reductase-containing component of the myxochelin
biosynthetic gene cluster, MxcG. The mechanism of
reduction involves activation of the substrate by
adenylation and transfer to a covalently-linked
pantetheine cofactor as a thioester. This thioester is
then reduced to give an aldehyde (thus releasing the
product) and a regenerated pantetheine thiol. (In
myxochelin biosynthesis this aldehyde is further reduced
to an alcohol or converted to an amine by an
aminotransferase.) This is a fundamentally different
reaction than beta-ketoreductase domains of polyketide
synthases which act at a carbonyl two carbons removed
from the thioester and forms an alcohol as a product.
This domain is invariably found at the C-terminus of the
proteins which contain it (presumably because it results
in the release of the product). The majority of hits to
this model are non-ribosomal peptide synthetases in
which this domain is similarly located proximal to a
thiolation domain (pfam00550). In some cases this domain
is found at the end of a polyketide synthetase enzyme,
but is unlike ketoreductase domains which are found
before the thiolase domains. Exceptions to this observed
relationship with the thiolase domain include three
proteins which consist of stand-alone reductase domains
(GP|466833 from M. leprae, GP|435954 from Anabaena and
OMNI|NTL02SC1199 from Strep. coelicolor) and one protein
(OMNI|NTL01NS2636 from Nostoc) which contains N-terminal
homology with a small group of hypothetical proteins but
no evidence of a thiolation domain next to the putative
reductase domain. Below the noise cutoff to this model
are proteins containing more distantly related
ketoreductase and dehydratase/epimerase domains. It has
been suggested that a NADP-binding motif can be found in
the N-terminal portion of this domain that may form a
Rossman-type fold.
Length = 367
Score = 29.7 bits (67), Expect = 5.7
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 543 TAMAIHPTLSTLVTVYSDHRIVEFDLNR--KAFTTFSRKLETNHPNEWLSRQLPVLGIEF 600
++ P S V+ L+ L +EWL R G +
Sbjct: 243 VVLSSRPAASAGGPVFHVVNPEPVSLDEFLDWLERAGYNLRLVSFDEWLQRLEDSDGAKR 302
Query: 601 DPQDSSLIYLMDDSAL 616
DP+ L+ L+
Sbjct: 303 DPRRYPLLPLLHFLGA 318
>gnl|CDD|165322 PHA03024, PHA03024, hypothetical protein; Provisional.
Length = 229
Score = 28.7 bits (64), Expect = 8.5
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 21/151 (13%)
Query: 343 QSTPVSLAKDIQHVLLQYTSHLELWSLGSAQSTDLSSHSNTTGV---PLLSFPRLIVKMS 399
+ + DI + ++ L +S S L + P + F I+ +
Sbjct: 84 KDIEIFNGDDIS----KISNQLNFYSASSGDQNILLGIRKAINIDINPFILFRNSIIAIV 139
Query: 400 AVNNATIRCSVVSNDGK-------YVAYSTESCVRLHSLDLDGDKP--QISRIKNLPAPL 450
NN C + SN ++ + E + + G+ P + N+
Sbjct: 140 FNNNEICHCFIGSNQNSDADDIIAHIEFIKE---NYNKFVIIGEIPIENNIQFLNILINN 196
Query: 451 FKSIFTHV-LISADSTLLLAVSLN-GPLYII 479
+I T+ +I D+ + + ++ G L+ I
Sbjct: 197 DFAIITNKKIIDKDNQIFSFLEIDPGILFTI 227
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.408
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,663,819
Number of extensions: 3262604
Number of successful extensions: 2332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2284
Number of HSP's successfully gapped: 29
Length of query: 708
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 604
Effective length of database: 6,324,786
Effective search space: 3820170744
Effective search space used: 3820170744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)