RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12614
(708 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 70.5 bits (171), Expect = 1e-13
Identities = 38/315 (12%), Positives = 92/315 (29%), Gaps = 36/315 (11%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFSGG 88
+ + P S + + D +I++WD ET +R G S L S
Sbjct: 20 VTRVIFHPVFSVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78
Query: 89 LQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYE 148
+ +D + + +S+ + + + I ++++ +
Sbjct: 79 ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT 138
Query: 149 KLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFS------ 201
+ + + G + + VRVW + ++ +
Sbjct: 139 --FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196
Query: 202 --------KNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVS 253
+ + +++G ++ WD TG+ + H + +
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256
Query: 254 EDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALH-- 311
++ D T+ + K + + + HE V SL H
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNA----------------HEHFVTSLDFHKT 300
Query: 312 GNRLYSGGLDSYLSL 326
+ +G +D + +
Sbjct: 301 APYVVTGSVDQTVKV 315
Score = 46.3 bits (108), Expect = 8e-06
Identities = 35/330 (10%), Positives = 88/330 (26%), Gaps = 33/330 (10%)
Query: 243 HKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHE 302
H+ + + + + A D T+ + + G + +
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75
Query: 303 GDVKSLALHGNRLYSGGLDSYLSLSYYPPKTLVKYPCTLAQSTPVSLAKDIQHVLLQYTS 362
+ + + + ++ P VS ++D + + +
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN---GDHIVSASRDKTIKMWEVQT 132
Query: 363 HLELWSLGSAQSTDLSSHSNTTGVPLLSFPRLIVKMSAVNNATIRCSVVSNDGKYVAYST 422
+ + + N G + S SND +
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIAS--------------------CSNDQTVRVWVV 172
Query: 423 ESCVRLHSLDLDGDKPQISRIKNLPAPLFKSIFTH---VLISADSTLLLAVSLNGPLYII 479
+ L + + S T LL+ S + + +
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232
Query: 480 DLSSLEIKYCVDPYKSNLMSDVISLVQMSECKQYIVCADRKSHVVIW--KNGQHHASLPR 537
D+S+ + + + + V ++I+ + +W KN + +L
Sbjct: 233 DVSTGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287
Query: 538 YRKPSTAMAIHPTLSTLVTVYSDHRIVEFD 567
+ T++ H T +VT D + ++
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 43.2 bits (100), Expect = 6e-05
Identities = 35/330 (10%), Positives = 106/330 (32%), Gaps = 33/330 (10%)
Query: 155 QGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCA 213
+ + +H +V+ A ++VWD G + S + +
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76
Query: 214 DFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQR 273
+ ++ WD + + H ++ ++++ + +++ A D T+ ++
Sbjct: 77 CSADM------TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 274 TRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDSYLSLSYYPPKT 333
V + +G + + + + G + S D + + K
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQD--------------GTLIASCSNDQTVRVWVVATKE 176
Query: 334 LV-KYPCTLAQSTPVSLAKDIQHVLL-QYTSHLELWSLGSAQSTDLSSHSNTTGVPLLSF 391
+ +S A + + + + T S S T + +S
Sbjct: 177 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236
Query: 392 PRLIVKMSAVNNATIRCSVVSNDGKYVAY-STESCVRLHSLDLDGDKPQISRIKNLPAPL 450
++ + +N +R + + GK++ + + +R+ +K + + +
Sbjct: 237 GMCLMTLVGHDNW-VRGVLFHSGGKFILSCADDKTLRVWDYK---NKRCMKTLNAHEHFV 292
Query: 451 FKSIFTHVLISADSTLLLAVSLNGPLYIID 480
T + + ++ S++ + + +
Sbjct: 293 -----TSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 38.6 bits (88), Expect = 0.002
Identities = 26/232 (11%), Positives = 59/232 (25%), Gaps = 13/232 (5%)
Query: 111 SGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYL 170
+ H ++ + +E I ++ + L + ++ SG L
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLL 74
Query: 171 VTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWD 230
+ A +G + + I++ ++ W+
Sbjct: 75 ASCSADMTIKLWDFQGFECIRT-----MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 231 GKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSS 290
+TG H++ + + ++D + D TV + K
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 291 V------WVRSVNRVIHEGDVKSLALHGNRLYSGGLDSYLSLSYYPPKTLVK 336
S + K G L SG D + + +
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 66.7 bits (161), Expect = 2e-12
Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 9/157 (5%)
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
L SG +D+R + + + A G++
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSL 194
LF + + L D I ++ SG L+ G VWD K ++
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 195 DKSSKFSKNTAVWCVAFCAD-FTIITGDSGGFVRFWD 230
+ V C+ D + TG F++ W+
Sbjct: 311 HDNR-------VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 62.8 bits (151), Expect = 4e-11
Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 7/156 (4%)
Query: 114 CWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTG 173
LS+ RL +G L+ + + + I + +G+ TG
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATG 244
Query: 174 CAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD-FTIITGDSGGFVRFWDGK 232
A + S + + V+F ++ G WD
Sbjct: 245 SDDATCRLFDLRADQELMTY----SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 233 TGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTV 268
+ + H + L V++D + D +
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Score = 52.8 bits (125), Expect = 7e-08
Identities = 35/288 (12%), Positives = 69/288 (23%), Gaps = 36/288 (12%)
Query: 71 SNSIECLTWFND--RLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAA 128
I + W D L S G + +D N + + S + +A
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114
Query: 129 GTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHA 188
G +++ + + + D +
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS----SGDTTCALWD 170
Query: 189 IHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDIL 248
I + + ++G + WD + G+ H+ DI
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230
Query: 249 ALTVSEDENYLYCAGVDPTVV------------CFQRTRKPQVCSTSGPEQGSSVWVRSV 296
A+ + N D T + S S + G +
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 297 NRVI----------------HEGDVKSLALH--GNRLYSGGLDSYLSL 326
+ H+ V L + G + +G DS+L +
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Score = 45.5 bits (106), Expect = 1e-05
Identities = 41/324 (12%), Positives = 89/324 (27%), Gaps = 43/324 (13%)
Query: 205 AVWCVAFCADF-TIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAG 263
++ + + D +++ G + WD T + + ++ + NY+ C G
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 264 VDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDSY 323
+D + + S G + ++ + V S L+
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 324 LSLSYYPPKTLVKYPCTLAQSTPVSLAKDIQHVLLQYTSHLELWSLGSAQSTDLSSHSNT 383
+ ++ VS A D +LW +
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDA---------SAKLWDV-------------R 214
Query: 384 TGVPLLSFPRLIVKMSAVNNATIRCSVVSNDGKYVAY-STESCVRLHSLDLDGDKPQISR 442
G+ +F + + I +G A S ++ RL D
Sbjct: 215 EGMCRQTFT--------GHESDINAICFFPNGNAFATGSDDATCRLF------DLRADQE 260
Query: 443 IKNLPAPLFKSIFTHVLISADSTLLLAVSLNGPLYIIDLSSLEIKYCVDPYKSNLMSDVI 502
+ T V S LLLA + + D + + + + +
Sbjct: 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC--- 317
Query: 503 SLVQMSECKQYIVCADRKSHVVIW 526
+ +++ + S + IW
Sbjct: 318 --LGVTDDGMAVATGSWDSFLKIW 339
Score = 42.8 bits (99), Expect = 8e-05
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 3/112 (2%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND--RLFS 86
IN I P + A D + ++D+ + + I +++ L +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLLA 287
Query: 87 GGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLF 138
G N +D + + A CL V +A G+ + ++
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 40.5 bits (93), Expect = 5e-04
Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 5/110 (4%)
Query: 456 THVLISADSTLLLAVSLNGPLYIIDLSSLEIKYCVDPYKSNLMSDVISLVQMSECKQYIV 515
+ + S + + DL + Y + + I+ V S+ + ++
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDL---RADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 516 CADRKSHVVIW--KNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRI 563
+ +W L + + + + + T D +
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Score = 35.9 bits (81), Expect = 0.016
Identities = 39/319 (12%), Positives = 87/319 (27%), Gaps = 68/319 (21%)
Query: 149 KLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVW 207
+ L +I W + LV+ + +WD + + +H + L ++ V
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR-------SSWVM 101
Query: 208 CVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKD--------------------- 246
A+ + + + + + +
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 247 ----ILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVI-- 300
+ + G V+ ++ + + + +W
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 301 ---HEGDVKSLALH--GNRLYSGGLDSYLSLSYYPPKTLVKYPCTLAQSTPV---SLAKD 352
HE D+ ++ GN +G D+ L + + S +K
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 353 IQHVLLQYT-SHLELWSLGSAQSTD-LSSHSNTTGVPLLSFPRLIVKMSAVNNATIRCSV 410
+ +L Y + +W A L+ H N + C
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDN----------------------RVSCLG 319
Query: 411 VSNDGKYVA-YSTESCVRL 428
V++DG VA S +S +++
Sbjct: 320 VTDDGMAVATGSWDSFLKI 338
Score = 28.2 bits (61), Expect = 3.9
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWD 54
++C+ +A D ++IW+
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 55.2 bits (131), Expect = 1e-08
Identities = 42/327 (12%), Positives = 84/327 (25%), Gaps = 23/327 (7%)
Query: 168 DYLVTGCAA-AVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD--FTIITGDSGG 224
DY++ + V D K +++ + T +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGP-----TPMVPMVAPGGRIAYATVNKSE 56
Query: 225 FVRFWDGKTG-----VQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKPQV 279
+ D TG + S + K + +S D L + +P
Sbjct: 57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 280 CSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDSYLSLSYYPPKTLVKYPC 339
+ E S + LA + GL L + TLV+
Sbjct: 117 VALYDAETLSRRKAFE-----APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKP 171
Query: 340 TLAQSTPVSLAKDIQHVLLQYTSHLELWSLGSAQSTDLSSHSNTTGVPLLSFPRLIVKMS 399
+ D+ V Q+ S + + D+ P L+
Sbjct: 172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDI-----DPADPTAYRTGLLTMDL 226
Query: 400 AVNNATIRCSVVSNDGKYVAYSTESCVRLHSLDLDGDKPQISRIKNLPAPLFKSIFTHVL 459
+R + + + + R + + + ++ + V
Sbjct: 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVN 286
Query: 460 ISADSTLLLAVSLNGPLYIIDLSSLEI 486
+S D + + G L D +LE
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDAETLEK 313
Score = 35.9 bits (81), Expect = 0.015
Identities = 20/212 (9%), Positives = 55/212 (25%), Gaps = 16/212 (7%)
Query: 51 EIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFSGGLQGFVNEYDMRRLNI-KSSTAV 109
+I ++ +++ + ++ L + +
Sbjct: 136 QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195
Query: 110 TSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDY 169
+ K + + + + ++ +
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA--KT 253
Query: 170 LVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD-FTIITGDSGGFVRF 228
G + +D+ K +I ++ L S + V D T+ G + G +
Sbjct: 254 RAFGAYNVLESFDLEKNASIKRVPLPHS--------YYSVNVSTDGSTVWLGGALGDLAA 305
Query: 229 WDGKTGVQWSDVKTHKKDILALT----VSEDE 256
+D +T + V ++L + DE
Sbjct: 306 YDAETLEKKGQVDLPGNASMSLASVRLFTRDE 337
Score = 27.8 bits (60), Expect = 4.6
Identities = 23/163 (14%), Positives = 43/163 (26%), Gaps = 5/163 (3%)
Query: 410 VVSNDGKYVAYSTESCVRLHSLDLDGDKPQISRIKNLPAPLFKSIFTHVLISADSTLLLA 469
+V+ G+ + L +DL + + P KS+F L TL +
Sbjct: 40 MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIY 99
Query: 470 VSLNGPLYIIDLSSLEIKYCVDPYKSNL-----MSDVISLVQMSECKQYIVCADRKSHVV 524
S D + I+++ + + R HV+
Sbjct: 100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVM 159
Query: 525 IWKNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRIVEFD 567
+ G P + A L+ S +
Sbjct: 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPF 202
Score = 26.7 bits (57), Expect = 9.8
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 24 PEPKVINCIACEPKSSRLAVSRADQSIEIWDI 55
P P + S + + A + +D
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 53.2 bits (126), Expect = 5e-08
Identities = 36/341 (10%), Positives = 76/341 (22%), Gaps = 34/341 (9%)
Query: 162 AWHSSGDYLVTGCAA-AVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD--FTII 218
A + +Y++ + V D+ + D +
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF------GPGTAMMAPDNRTAYV 56
Query: 219 TGDSGGFVRFWDGKTG------VQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQ 272
+ G + D T S + + + +S D +Y +
Sbjct: 57 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
Query: 273 RTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDSYLSLSYYPPK 332
KP G + + + A G+ +G +
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTG 173
Query: 333 TLVKYPCTLAQSTPVSLAKDIQHVLLQYT-----SHLELWSLGSAQSTDLSSHSNTTGVP 387
+ A D+ + + S L + D ++ G
Sbjct: 174 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 233
Query: 388 LLSF--PRLIVKMSAVNNATIRCSVVSNDGKYVAYSTESCVRLHSLDLDGDKPQISRIKN 445
+ + + A + S Y + + + D Q IK
Sbjct: 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKY------DLKQRKLIKA 287
Query: 446 LPAPLFKSIFTHVLISADSTLLLAVSLNGPLYIIDLSSLEI 486
+ V L L + + +LE
Sbjct: 288 ANLD---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325
Score = 44.0 bits (102), Expect = 4e-05
Identities = 17/139 (12%), Positives = 38/139 (27%), Gaps = 10/139 (7%)
Query: 115 WCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC 174
K+ A + G + + + G
Sbjct: 212 TIARFKDDKQDPATADLLYGYLSVDLKT-GKTHTQEFADLTELYFTGLRSPKDPNQIYGV 270
Query: 175 AAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD-FTIITGDSGGFVRFWDGKT 233
+ +D+ + I +LD + +CVAF + G + + ++ T
Sbjct: 271 LNRLAKYDLKQRKLIKAANLDHT--------YYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322
Query: 234 GVQWSDVKTHKKDILALTV 252
+ ++K D+ T
Sbjct: 323 LEKVKNIKLPGGDMSTTTP 341
Score = 27.4 bits (59), Expect = 6.3
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 24 PEPKVINCIACEPKSSRLAVSRADQSIEIWDIS 56
C+A + K +L + + +++
Sbjct: 289 NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 52.5 bits (124), Expect = 9e-08
Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 25/138 (18%)
Query: 111 SGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLL----------YEKLLDRQQGRILC 160
+ + + + + + +G+ + L+ + + E + +L
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 161 TAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADF---- 215
A + +Y+++G V WD G+ + + ++S V VA
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS-------VISVAVANGSSLGP 366
Query: 216 ---TIITGDSGGFVRFWD 230
TG R W
Sbjct: 367 EYNVFATGSGDCKARIWK 384
Score = 51.7 bits (122), Expect = 2e-07
Identities = 49/378 (12%), Positives = 110/378 (29%), Gaps = 43/378 (11%)
Query: 216 TIITGDSGGFVRFWDGKTGVQWS----DVKTHKKDILALTVSEDENYLYCAGVDPTVVCF 271
+ + + ++ + H + + S D YL T V
Sbjct: 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYR 89
Query: 272 QRTRKP-QVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALH--GNRLYSGGLDSYLSLSY 328
S + + + + ++S+ G L +G D + +
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 329 YPPKTLVKYPCTLAQSTPVSLAKDIQHVLLQYTSHLELWSLGSAQSTDLSSHSNTTGVPL 388
+ +V + + + +S + T
Sbjct: 150 IENRKIVMILQ-------------------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190
Query: 389 LSFPRLIVKMSAVNNATIRCSVVSNDGKYVAY-STESCVRLHSLDLDGDKPQISRIKNLP 447
++ + +V DGKY+A S + VR+ + G + +N
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENES 249
Query: 448 APLFKSIFTHVLISADSTLLLAVSLNGPLYIIDLSSLEIKYCVDPYKS-------NLMSD 500
K V+ + D +++ SL+ + + +L + K S D
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 501 VISLVQMSECKQYIVCADRKSHVVIW--KNGQHHASLPRYRKPSTAMAI------HPTLS 552
+ V ++ +YI+ + V+ W K+G L +R ++A+ P +
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369
Query: 553 TLVTVYSDHRIVEFDLNR 570
T D + + +
Sbjct: 370 VFATGSGDCKARIWKYKK 387
Score = 45.2 bits (105), Expect = 2e-05
Identities = 47/378 (12%), Positives = 105/378 (27%), Gaps = 62/378 (16%)
Query: 156 GRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADF 215
+ C + + G+YL TGC +V+ + G + ++S D ++
Sbjct: 63 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPEN----------- 111
Query: 216 TIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTR 275
+ S + I ++ S D +L D + +
Sbjct: 112 -------------------LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN 152
Query: 276 KPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDSYLSLSYYPPKTLV 335
+ V G EQ + + L +G +
Sbjct: 153 RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT----LSIEDGVT 208
Query: 336 KYPCTLAQSTPVSLAKDIQHVLLQYTSHLELWSLGSAQSTDLSSHSNTTGVPLLSFPRLI 395
+ ++ + V + + L +++ + H +
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD------------- 255
Query: 396 VKMSAVNNATIRCSVVSNDGKYVA-YSTESCVRLHSLD----LDGDKPQISRIKNLPAPL 450
++ V + DG+ V S + V+L +L K S +
Sbjct: 256 ---------SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 306
Query: 451 FKSIFTHVLISADSTLLLAVSLNGPLYIIDLSSLEIKYCVDPYKSNLMS-DVISLVQMSE 509
K V + + +L+ S + + D S + ++++++S V + +
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366
Query: 510 CKQYIVCADRKSHVVIWK 527
IWK
Sbjct: 367 EYNVFATGSGDCKARIWK 384
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 51.8 bits (122), Expect = 2e-07
Identities = 35/311 (11%), Positives = 87/311 (27%), Gaps = 11/311 (3%)
Query: 115 WCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGC 174
C + +K + +A +++++ S + L G++ W + +VT
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG 70
Query: 175 A-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKT 233
VW + + + + ++ ++ + +
Sbjct: 71 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 130
Query: 234 GVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWV 293
V K + +L+L + L D F K + GS +
Sbjct: 131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 190
Query: 294 RSVNRVIHE--GDVKSLALHGNRLYSGGLDSYLSLSYYPPKTLVKYPCTLAQSTPVSLAK 351
+ G V + N + ++ + +++ P
Sbjct: 191 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP----- 245
Query: 352 DIQHVLLQYTSHLELWSLGSAQSTDLSSHSNTTGVPLLSFPRLIVKMSAVNNATIRCSVV 411
+ + + + L + G L ++ + G + K S+ T R
Sbjct: 246 ---LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302
Query: 412 SNDGKYVAYST 422
+ D K + +
Sbjct: 303 NLDKKASSEGS 313
Score = 48.3 bits (113), Expect = 2e-06
Identities = 37/275 (13%), Positives = 86/275 (31%), Gaps = 21/275 (7%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND--RLFS 86
I+C A +++A+ + + I++ +V + + + W D R+ +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 87 GGLQGFVNEYDMRRLNIKSSTAVT--SGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEG 144
G + ++ K + + + C+ ++ A G+ I++ E
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 145 LLYEKLLDRQQGRILCTA---WHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFS 201
+ ++ R + +S C R++ + + +
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 202 KNT-----------AVWCVAFCADFTIITGDSG-GFVRFWDGKTGVQWSDVKTHKKDILA 249
V V F A+ + + S V D + + + + +LA
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 250 LTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSG 284
+T + + + AG D V F S G
Sbjct: 249 VTFITESSLV-AAGHDCFPVLFTYDSAAGKLSFGG 282
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 51.0 bits (120), Expect = 2e-07
Identities = 26/206 (12%), Positives = 60/206 (29%), Gaps = 12/206 (5%)
Query: 30 NCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFSGGL 89
+ R+ D +++WD + G +N + L + + SG L
Sbjct: 139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCL-HTLQGH--TNRVYSLQFDGIHVVSGSL 195
Query: 90 QGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEK 149
+ +D+ N + + + +L +G + ++ I L
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTL 253
Query: 150 LLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCV 209
+ + + + + V++WD+ G I + +S VW +
Sbjct: 254 QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG--VVWRI 311
Query: 210 AFCADFTIIT-----GDSGGFVRFWD 230
+ G + D
Sbjct: 312 RASNTKLVCAVGSRNGTEETKLLVLD 337
Score = 43.3 bits (100), Expect = 6e-05
Identities = 31/329 (9%), Positives = 86/329 (26%), Gaps = 12/329 (3%)
Query: 202 KNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYC 261
+ + C+ FC + I++G ++ W TG + H + + + ++
Sbjct: 16 DDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74
Query: 262 AGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLD 321
V + + L
Sbjct: 75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM 134
Query: 322 SYLSLSYYPPKTLVKYPCTLAQSTPVSLAKDIQHVLLQYTSHLELWSLGSAQSTDLSSHS 381
+++ + + + L H + S S
Sbjct: 135 GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGS 194
Query: 382 NTTGVPLLSFPRLIVKMSAVNNATIRCSVVSNDGKYVAYSTESCVRLHSLDLDGDKPQIS 441
T + + + + ++ + D V+ + +S V++ + +
Sbjct: 195 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 254
Query: 442 RIKNLPAPLFKSIFTHVLISADSTLLLAVSLNGPLYIIDLSSLEIKYCVDPYKSNLMSDV 501
K + + ++ S +G + + DL + E + +S V
Sbjct: 255 GP-------NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 502 ISLVQMSECKQYIVCADR----KSHVVIW 526
+ ++ S K R ++ +++
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Score = 39.8 bits (91), Expect = 8e-04
Identities = 47/304 (15%), Positives = 94/304 (30%), Gaps = 44/304 (14%)
Query: 27 KVINCIACEPKSSRLAVSRADQSIEIWDISE-------TPHVDRVFIGDPLSNSIECLTW 79
VI C+ +R+ D ++++W H V+ N I +
Sbjct: 18 HVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGST 75
Query: 80 FNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQ 139
G + + S R+ T Q L
Sbjct: 76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG 135
Query: 140 ISDEGLLYE---------------KLLDRQQGRILCT---------AWHSSGDYLVTGCA 175
+ K+ D + L T + G ++V+G
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSL 195
Query: 176 -AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTG 234
++RVWD+ G+ IH ++ +S + + +++G++ V+ WD KTG
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQS-------LTSGMELKDNI-LVSGNADSTVKIWDIKTG 247
Query: 235 VQWSDVKTHKK-DILALTVSEDENYLYCAGVDPTVVCFQ-RTRKPQVCSTSGPEQGSSVW 292
++ K + ++N++ + D TV + +T + + GS
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 293 VRSV 296
V +
Sbjct: 308 VWRI 311
Score = 36.3 bits (82), Expect = 0.011
Identities = 49/367 (13%), Positives = 102/367 (27%), Gaps = 53/367 (14%)
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
CL + +R+ SG + + + +G W +
Sbjct: 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII-----ISGSTD 76
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLD 195
++ + + + A +RVWDI G +H
Sbjct: 77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH----- 131
Query: 196 KSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSED 255
+ A +++G V+ WD +T ++ H + ++ D
Sbjct: 132 ---VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFD 186
Query: 256 ENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRL 315
++ +D ++ + + + +G H+ + L N L
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTG----------------HQSLTSGMELKDNIL 230
Query: 316 YSGGLDSYLSLSYYPPKTLVKYPCTLAQSTPVSLAKDIQHVLLQYTS---HLELWSLGSA 372
SG DS + + ++ + + +S ++LW L
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL--- 287
Query: 373 QSTDLSSHSNTTGVPLLSFPRLIVKMSAVNNATIRCSVVSNDGKYVAYSTES---CVRLH 429
TG + + L S + + SN A + + +L
Sbjct: 288 ----------KTGEFIRNLVTLE---SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334
Query: 430 SLDLDGD 436
LD D D
Sbjct: 335 VLDFDVD 341
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 48.7 bits (114), Expect = 1e-06
Identities = 38/300 (12%), Positives = 93/300 (31%), Gaps = 24/300 (8%)
Query: 27 KVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFS 86
K + C+ ++ D +I+IWD T R+ G + S+ CL + D
Sbjct: 16 KGVYCLQ--YDDQKIVSGLRDNTIKIWDK-NTLECKRILTGH--TGSVLCLQY--DERVI 68
Query: 87 GGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLL 146
+ + L + ++ ++ I ++ ++ +
Sbjct: 69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAV 206
+ + + + ++VW+ + ++ +
Sbjct: 129 TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN-------GHKRGI 181
Query: 207 WCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDP 266
C+ + D +++G S +R WD + G ++ H + L + D + D
Sbjct: 182 ACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFDNKRIVSGAYDG 238
Query: 267 TVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDSYLSL 326
+ + + +G ++ V H G V L ++ S D + +
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTL-------VEHSGRVFRLQFDEFQIVSSSHDDTILI 291
Score = 47.5 bits (111), Expect = 3e-06
Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 10/233 (4%)
Query: 1 MSHMCKKRNTMGTYGVHNIKFYAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPH 60
+ + + + D+SI +WD++
Sbjct: 68 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127
Query: 61 VDRVFIGDPLSNSIECLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVH 120
+ + ++ + + + + S + ++ + CL
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 187
Query: 121 KKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCA-AAVR 179
RL+ +G+ I L+ I L + L +V+G ++
Sbjct: 188 D--RLVVSGSSDNTIRLWDIEC----GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241
Query: 180 VWDIHKGHAIHKMSLDKSSKFSK--NTAVWCVAFCADFTIITGDSGGFVRFWD 230
VWD+ + + + V+ + F +F I++ + WD
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWD 293
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 48.0 bits (112), Expect = 2e-06
Identities = 37/238 (15%), Positives = 68/238 (28%), Gaps = 11/238 (4%)
Query: 1 MSHMCKKRNTMGTYGVHNIKFYAPEPKVINCIACEPKSSRLAVSRA--DQSIEIWDISET 58
+ + V+ + I+ I+ + + RL V D
Sbjct: 90 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG 149
Query: 59 PHVDRVFIGDPLSNSIECLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSG-----T 113
+ V N+ R + G G V Y +S
Sbjct: 150 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 209
Query: 114 CWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTG 173
S + ++ G+++ S E L Y + + T
Sbjct: 210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATV 269
Query: 174 CA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWD 230
A A +RVWD+ + K +LDK ++ V + II+ G + F++
Sbjct: 270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQ---QVGVVATGNGRIISLSLDGTLNFYE 324
Score = 34.5 bits (77), Expect = 0.042
Identities = 26/265 (9%), Positives = 69/265 (26%), Gaps = 15/265 (5%)
Query: 19 IKFYAPEPKVINCIACEPKSS--RLAVSRADQSIEIWDISE-----TPHVDRVFIGDPLS 71
++F V+ + P L + +W + + V+ L+
Sbjct: 56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 115
Query: 72 NSIECLTWFNDRLFSGGLQGFVNEY-----DMRRLNIKSSTAVTSGTCWCLSVHKKKRLL 126
I ++W + + + + ++ + + C +
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175
Query: 127 AAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKG 186
+ G + +Q +QG + S + R G
Sbjct: 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235
Query: 187 HAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKD 246
+ + + + ++ +++ T + +R WD T K+
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295
Query: 247 ILALTVS---EDENYLYCAGVDPTV 268
+ V + +D T+
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTL 320
Score = 31.8 bits (70), Expect = 0.27
Identities = 7/72 (9%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 114 CWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGD-YLVT 172
+ A I ++ ++ + + LD+QQ ++G+ +++
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313
Query: 173 GCA-AAVRVWDI 183
+ +++
Sbjct: 314 LSLDGTLNFYEL 325
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 46.0 bits (107), Expect = 8e-06
Identities = 32/332 (9%), Positives = 78/332 (23%), Gaps = 37/332 (11%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFND--RLFS 86
I+ I P S L ++ D S+ ++ + + + C + ++
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 87 GGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLL 146
G + + + K + I
Sbjct: 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133
Query: 147 YEKLLDRQQGRILCTAWHSSGDYLVTGCAAA-------VRVWDIHKGHAIHKMSLDKSSK 199
+ + + V+ + + + + K
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193
Query: 200 FSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKT-------------HKKD 246
+ + + D V F+D + S +
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253
Query: 247 ILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVK 306
+ ++ S +LY AG D + C+ + ++ + + + S V
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV--------------- 298
Query: 307 SLALHGNRLYSGGLDSYLSLSYYPPKTLVKYP 338
+A N L D + +T+
Sbjct: 299 KIACSDNILCLATSDDTFKTNAAIDQTIELNA 330
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 46.0 bits (107), Expect = 1e-05
Identities = 31/285 (10%), Positives = 69/285 (24%), Gaps = 41/285 (14%)
Query: 27 KVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPL--SNSIECLTWFND-- 82
+V+ + + + +++WDIS + V D L N I D
Sbjct: 52 EVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC 110
Query: 83 RLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISD 142
L GG ++ +D+ + +TS C ++ + N+
Sbjct: 111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170
Query: 143 EGLLYEKLLDRQQGRILCTAWH----------SSGDYLVTGCAAAVRVWDIHKGHAIHKM 192
+ C ++ I +
Sbjct: 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230
Query: 193 SLDKSSKFSK------------------------NTAVWCVAFCAD-FTIITGDSGGFVR 227
+ ++ + V + F ++ +
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290
Query: 228 FWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQ 272
W G K +L+ +S D+ Y+ D ++
Sbjct: 291 AWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 43.3 bits (100), Expect = 6e-05
Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 114 CWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTG 173
L + + + +N ++ +++ ++ +L Y+VTG
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYIVTG 324
Query: 174 CA-AAVRVWDI 183
V+++
Sbjct: 325 SGDKKATVYEV 335
Score = 43.3 bits (100), Expect = 7e-05
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 2/90 (2%)
Query: 155 QGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD 214
+ + ++ TG V+VWDI +K + + +++ + D
Sbjct: 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG--NKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 215 FTIITGDSGGFVRFWDGKTGVQWSDVKTHK 244
+
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELT 138
Score = 39.8 bits (91), Expect = 8e-04
Identities = 13/86 (15%), Positives = 20/86 (23%), Gaps = 5/86 (5%)
Query: 200 FSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWS-----DVKTHKKDILALTVSE 254
+ V V + G V+ WD S D I + +
Sbjct: 48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 255 DENYLYCAGVDPTVVCFQRTRKPQVC 280
D L G T+ +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRI 133
Score = 29.8 bits (65), Expect = 1.2
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 505 VQMSECKQYIVCADRKSHVVIW--KNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHR 562
++ + C ++ V + + + W G + + I +VT D +
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 563 IVEFDL 568
+++
Sbjct: 330 ATVYEV 335
Score = 29.0 bits (63), Expect = 1.9
Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 3/130 (2%)
Query: 403 NATIRCSVVSNDGKYVAYSTESCVRLHSLDLDGDKPQISRIKNLPAPLFKSIFTHVLISA 462
+ +SN ++V + CV++ + S + L + +
Sbjct: 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDIS---HPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 463 DSTLLLAVSLNGPLYIIDLSSLEIKYCVDPYKSNLMSDVISLVQMSECKQYIVCADRKSH 522
D L+ L I DL++ + + S +++ S+ +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 523 VVIWKNGQHH 532
+
Sbjct: 168 WDLHNQTLVR 177
Score = 28.6 bits (62), Expect = 2.9
Identities = 1/27 (3%), Positives = 8/27 (29%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDI 55
+ + D+ ++++
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYEV 335
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 43.3 bits (100), Expect = 7e-05
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 160 CTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIIT 219
T ++ S + LV+G ++++ G +H L + +W V F +
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD------QIWSVNFKGKTLVAA 340
Query: 220 GDSGGFVRFWD 230
+ G
Sbjct: 341 VEKDGQSFLEI 351
Score = 39.9 bits (91), Expect = 8e-04
Identities = 16/140 (11%), Positives = 39/140 (27%)
Query: 74 IECLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQG 133
I CL + ++ + +G + YD + G W L L++ T++
Sbjct: 16 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 75
Query: 134 HINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMS 193
+ + + + + + + VW + K ++
Sbjct: 76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135
Query: 194 LDKSSKFSKNTAVWCVAFCA 213
+ +T F
Sbjct: 136 EEHDYPLVFHTPEENPYFVG 155
Score = 38.3 bits (87), Expect = 0.002
Identities = 18/277 (6%), Positives = 53/277 (19%), Gaps = 11/277 (3%)
Query: 2 SHMCKKRNTMGTYGVHNIKFYAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHV 61
+ + + ++ I + D ++ +W + + V
Sbjct: 72 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 131
Query: 62 DRVFIGDPLSNSIECLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHK 121
+ NI S + +
Sbjct: 132 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM 191
Query: 122 KKRLLAAGTEQGHINLFQISDEGLLYEKLLDR---------QQGRILCTAWHSSGDYLVT 172
K + +G + + +D + + L
Sbjct: 192 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 251
Query: 173 GCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGK 232
V + + F I+ S ++ +
Sbjct: 252 SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR 311
Query: 233 TG-VQWSDVKTHKKDILALTVSEDENYLYCAGVDPTV 268
+G + +++ I ++ + D
Sbjct: 312 SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQS 347
Score = 34.1 bits (76), Expect = 0.053
Identities = 12/78 (15%), Positives = 22/78 (28%)
Query: 203 NTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCA 262
T+V D +ITG +R +D + H + AL + + +
Sbjct: 12 MTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGS 71
Query: 263 GVDPTVVCFQRTRKPQVC 280
V +
Sbjct: 72 TDRTVRVWDIKKGCCTHV 89
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 42.6 bits (98), Expect = 1e-04
Identities = 8/81 (9%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 151 LDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCV 209
G + W G + + A +++W++ + + + +
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ----QLGI 289
Query: 210 AFCADFTIITGDSGGFVRFWD 230
+ +++ + GF+ F +
Sbjct: 290 IWTKQ-ALVSISANGFINFVN 309
Score = 41.0 bits (94), Expect = 3e-04
Identities = 15/98 (15%), Positives = 36/98 (36%)
Query: 1 MSHMCKKRNTMGTYGVHNIKFYAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPH 60
+ T + + + P +++A + AD++I+IW+++
Sbjct: 213 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 272
Query: 61 VDRVFIGDPLSNSIECLTWFNDRLFSGGLQGFVNEYDM 98
+ +G + + + W L S GF+N +
Sbjct: 273 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 38.7 bits (88), Expect = 0.002
Identities = 24/255 (9%), Positives = 66/255 (25%), Gaps = 5/255 (1%)
Query: 19 IKFYAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIG---DPLSNSIE 75
+ Y P A ++ IWD ++T H+ + I P+ +
Sbjct: 51 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110
Query: 76 CLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI 135
G + F + + + + + + +
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170
Query: 136 NLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLD 195
+ + + TG + +++ G D
Sbjct: 171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 230
Query: 196 KSSKFSKNTAVWCVAFCADFT-IITGDSGGFVRFWDGKTGVQWSDVKTHKK-DILALTVS 253
+ + +V+ + + D T I + + ++ W+ T + + + L +
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290
Query: 254 EDENYLYCAGVDPTV 268
+ L + +
Sbjct: 291 WTKQALVSISANGFI 305
Score = 37.2 bits (84), Expect = 0.006
Identities = 12/85 (14%), Positives = 19/85 (22%)
Query: 208 CVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPT 267
+ I +G V + H S Y V
Sbjct: 22 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81
Query: 268 VVCFQRTRKPQVCSTSGPEQGSSVW 292
V + T+ + T+ P V
Sbjct: 82 VRIWDTTQTTHILKTTIPVFSGPVK 106
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 41.5 bits (95), Expect = 2e-04
Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 7/77 (9%)
Query: 155 QGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCA 213
I + + G L + A + WDI G + ++ + + +
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT------MITGIKTTS 65
Query: 214 DFTIITGDSGGFVRFWD 230
+ T ++
Sbjct: 66 KGDLFTVSWDDHLKVVP 82
Score = 35.7 bits (80), Expect = 0.014
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 178 VRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWD 230
V VW+++K + + ++V V + + TI++ ++FW+
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHA----MSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 34.2 bits (76), Expect = 0.045
Identities = 27/278 (9%), Positives = 56/278 (20%), Gaps = 38/278 (13%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDIS--------ETPHVDRVF--------------- 65
I ++ L + A+ I WDIS H +
Sbjct: 15 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 74
Query: 66 -------------IGDPLSNSIECLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSG 112
+ + + + + S V
Sbjct: 75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP 134
Query: 113 TCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVT 172
+ S G + + + T+ S +
Sbjct: 135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 194
Query: 173 GCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGK 232
R + +++ S F + + TG V W+
Sbjct: 195 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 254
Query: 233 TGVQWSDV--KTHKKDILALTVSEDENYLYCAGVDPTV 268
+ H + + +E + AG D +
Sbjct: 255 KPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNI 292
Score = 32.3 bits (71), Expect = 0.16
Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 1/106 (0%)
Query: 111 SGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYL 170
+ LS + L + +GHIN + IS G+ D I S GD
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 171 VTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFT 216
++V ++
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 40.5 bits (93), Expect = 4e-04
Identities = 10/103 (9%), Positives = 25/103 (24%), Gaps = 11/103 (10%)
Query: 156 GRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD- 214
+ ++ + V V D G + K + + + D
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE--------IDSINVSQDE 311
Query: 215 --FTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSED 255
+ D ++G + V +T ++
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354
Score = 34.0 bits (76), Expect = 0.056
Identities = 34/273 (12%), Positives = 57/273 (20%), Gaps = 14/273 (5%)
Query: 156 GRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD- 214
G + A V V+D + L + +F T W + D
Sbjct: 58 GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 117
Query: 215 --FTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQ 272
V D + + + D +++C V F
Sbjct: 118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-DCYHIFPTAPDTFFMHCRDGSLAKVAFG 176
Query: 273 RTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGN-RLYSGGLDSYLSLSYYPP 331
P++ T + G + G L
Sbjct: 177 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA 236
Query: 332 KTLVKYPCTLAQSTPVSLAKDIQHVLLQYTSHLELWSLGSAQSTDLSSHSNTTGVPLLSF 391
T + +A + S + TG L F
Sbjct: 237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF 296
Query: 392 PRLIVKMSAVNNATIRCSVVSNDGKYVAYSTES 424
I VS D K + Y+ +
Sbjct: 297 E---------MGHEIDSINVSQDEKPLLYALST 320
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 38.4 bits (88), Expect = 0.002
Identities = 27/271 (9%), Positives = 56/271 (20%), Gaps = 14/271 (5%)
Query: 156 GRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCAD- 214
G A S V V+D I + L + +FS V + CA
Sbjct: 76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135
Query: 215 -FTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQR 273
+ + + +YL
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGA-SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA 194
Query: 274 TRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDSYLSLSYYPPKT 333
+ + ++ + G + +
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQAN-YPGMLVWAVASSILQGDIPAAGATMKAAIDGNE 253
Query: 334 LVKYPCTLAQSTPVSLAKDIQHVLLQYTSHLELWSLGSAQSTDLSSHSNTTGVPLLSFPR 393
+ + +AK + +E A + + SS + + G
Sbjct: 254 SGRKADNFRSAGFQMVAKLKNTDGI-MILTVEHSRSCLAAAENTSSVTASVGQTSGPIS- 311
Query: 394 LIVKMSAVNNATIRCSVVSNDGKYVAYSTES 424
N + + DG Y+ +
Sbjct: 312 --------NGHDSDAIIAAQDGASDNYANSA 334
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 37.2 bits (85), Expect = 0.006
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 214 DFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCF-Q 272
+ +T G + DG + + T + +S YL G D +
Sbjct: 32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDL 90
Query: 273 RTRKPQV 279
++P
Sbjct: 91 WAKEPTK 97
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 36.5 bits (82), Expect = 0.007
Identities = 8/72 (11%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 160 CTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTII 218
D + TG + ++ + + I K V + + T++
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD------GVNNLLWETPSTLV 273
Query: 219 TGDSGGFVRFWD 230
+ + ++ W+
Sbjct: 274 SSGADACIKRWN 285
Score = 33.0 bits (73), Expect = 0.12
Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 114 CWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTG 173
++ L+A G+ +I ++ + + K L+ + + W + + +G
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII-KALNAHKDGVNNLLWETPSTLVSSG 276
Query: 174 CAAAVRVWDI 183
A ++ W++
Sbjct: 277 ADACIKRWNV 286
Score = 32.2 bits (71), Expect = 0.19
Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 8/89 (8%)
Query: 205 AVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGV 264
+ + +I+G G + W + Q H I++L S+ + Y +
Sbjct: 15 GITALTVN---PLISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKAQEYSSISWD 66
Query: 265 DPTVVCFQRTRKPQVCSTSGPEQGSSVWV 293
D V +
Sbjct: 67 DTLKVNGITKHEFGSQPKVASANNDGFTA 95
Score = 29.2 bits (63), Expect = 1.8
Identities = 27/286 (9%), Positives = 68/286 (23%), Gaps = 15/286 (5%)
Query: 149 KLLDRQQGRILCTAWHSSGDYLVTGCA-AAVRVWDIHKGHAIHK-----MSLDKSSKFSK 202
K + I + L++G + W H H + K+ ++S
Sbjct: 7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSS 62
Query: 203 NTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCA 262
+ + G + ++ L
Sbjct: 63 ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP 122
Query: 263 GVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDS 322
G ++ + +T + S + V + +++ + Y D
Sbjct: 123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 182
Query: 323 YLSLSYYPPKTLVKYPCTLAQSTPVSLAKDIQHVLLQYTSHLELWSLGSAQSTDLSSHSN 382
+ Y ++ A T I + + S
Sbjct: 183 MGKILLYDLQSREVKTSRWAFRTS-----KINAISWKPAEKGANEEEIEEDLVATGSLDT 237
Query: 383 TTGVPLLSFPRLIVKMSAVNNATIRCSVVSNDGKYVAYSTESCVRL 428
+ + P I+K + + + V+ ++C++
Sbjct: 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKR 283
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 35.2 bits (79), Expect = 0.025
Identities = 16/194 (8%), Positives = 44/194 (22%), Gaps = 20/194 (10%)
Query: 17 HNIKFYAPEPKVINCIACEPKSSRLAVSRADQSIEIWDIS----ETPHVDRVFIGDPLSN 72
I E A + S L D V + F+ +
Sbjct: 169 RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 228
Query: 73 SIECLTWFNDRLFSG-------GLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVH--KKK 123
S + S + + ++ + + + S +
Sbjct: 229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 288
Query: 124 RLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAA-AVRVWD 182
E+G + + + + + + + + ++ + +
Sbjct: 289 AYYQGAPEKGVLLKYDVKT------RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342
Query: 183 IHKGHAIHKMSLDK 196
+ K + DK
Sbjct: 343 LEKPEDERTVETDK 356
Score = 27.9 bits (60), Expect = 5.2
Identities = 24/319 (7%), Positives = 65/319 (20%), Gaps = 37/319 (11%)
Query: 154 QQGRILCTAWHSSGDYLVTGCAA---AVRVWDIHKGHAIHK---MSLDKSSKFSKNTAVW 207
+ RI + ++D G A + + +N
Sbjct: 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 100
Query: 208 CVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPT 267
VA + G + +D ++ V
Sbjct: 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160
Query: 268 VVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVI----------------------HEGDV 305
+ + + +T+ + + ++ +
Sbjct: 161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP 220
Query: 306 KSLALHGNRLYSGGL--DSYLSLSYYPPKTLVKYPCTLAQSTPVSLAKDIQHVLLQYTSH 363
+ L L S S + + + V + L+ +
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP---INVDPGDYRMIIPLESSIL 277
Query: 364 LELWSLGSAQSTDLSSHSNTTGVPLLSFPRLIVKMSAVNNATIRCSVVSNDGKYVAY-ST 422
+ + + + + + +S D K V
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---RKVTEVKNNLTDLRLSADRKTVMVRKD 334
Query: 423 ESCVRLHSLDLDGDKPQIS 441
+ + L+ D+ +
Sbjct: 335 DGKIYTFPLEKPEDERTVE 353
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 34.4 bits (77), Expect = 0.044
Identities = 20/173 (11%), Positives = 55/173 (31%), Gaps = 27/173 (15%)
Query: 203 NTAVWCVAFCADFTIITGDSGGFVRFWDGKTG------VQWSDVKTHKKDILALTV---- 252
+ ++ V+ C F ++ G+++ WD K + HK + + V
Sbjct: 14 DADIFSVSACNSF-TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72
Query: 253 ---SEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLA 309
+ + + ++ ++ TR+ + + ++ + + +L
Sbjct: 73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIF------EKLDLLDSDMKKHSFWALK 126
Query: 310 LHG-------NRLYSGGLDSYLSLSYYPPKTLVKYPCTLAQSTPVSLAKDIQH 355
+RL + + + + P TL S + L ++
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179
Score = 34.1 bits (76), Expect = 0.056
Identities = 41/280 (14%), Positives = 84/280 (30%), Gaps = 50/280 (17%)
Query: 36 PKSSRLAVSRADQSIEIWDISE-------TPHVDRVFIGDPLSNSIECLTW-------FN 81
+ +A + + + I+ + D +S L W +
Sbjct: 77 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 136
Query: 82 DRLFSGGLQGFVNEYDMRRLN----------------IKSSTAVTSGTCWCLSVH-KKKR 124
RL + ++G + + + + + + SV ++
Sbjct: 137 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 196
Query: 125 LLAAGTEQGHINLFQISDEGLLYEKLL----DRQQGRILCTAWHSSGDYLVTG----CAA 176
L+A G G + + ++S LY I + G L
Sbjct: 197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 256
Query: 177 AVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFT-------IITGDSGGFVRFW 229
+ +++ G I +S+ S + ++ + + + G +RFW
Sbjct: 257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316
Query: 230 DGKTGVQWSDVKTHKKDI----LALTVSEDENYLYCAGVD 265
D KT + + + H DI L V E + L GV
Sbjct: 317 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF 356
Score = 32.9 bits (73), Expect = 0.11
Identities = 41/310 (13%), Positives = 81/310 (26%), Gaps = 23/310 (7%)
Query: 29 INCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFSGG 88
I ++ D +++WD D + + + F +
Sbjct: 17 IFSVSACNS--FTVSCSGDGYLKVWDNKL---------LDNENPKDKSYSHFVHKSGLHH 65
Query: 89 LQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHI---NLFQISDEGL 145
+ +T SG + ++ E+ + ++ + S L
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 146 LYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDI-HKGHAIHKMSLDKSSKFSKNT 204
+ DR L Y+ A + ++ S + +
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185
Query: 205 AVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKK------DILALTVSEDENY 258
V I TG + G V+ + T + ++ I ++ S +
Sbjct: 186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245
Query: 259 LYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALH--GNRLY 316
L A + C + S+ H V SL+ + G L
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305
Query: 317 SGGLDSYLSL 326
S G D L
Sbjct: 306 SAGWDGKLRF 315
Score = 27.5 bits (59), Expect = 5.5
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 301 HEGDVKSLALHGNRLYSGGLDSYLSL 326
H+ D+ S++ + S D YL +
Sbjct: 13 HDADIFSVSACNSFTVSCSGDGYLKV 38
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia
pseudomallei [TaxId: 28450]}
Length = 292
Score = 33.2 bits (75), Expect = 0.084
Identities = 18/170 (10%), Positives = 42/170 (24%), Gaps = 24/170 (14%)
Query: 156 GRILCTAWHSSGDYLV---TGCAAAVR-----------VWDIHKGHAIHKMSLDKSSKFS 201
++ AW S+ + G A R + + + +S K S
Sbjct: 31 SELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKAS 90
Query: 202 KNTAVWCVAFCADFTIITGDSGGFV---------RFWDGKTGVQWSDVKTHKKDILALTV 252
+ +A +G + +T ++ ++ D
Sbjct: 91 -LADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYR 149
Query: 253 SEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHE 302
+ + + + T G + + S N V +
Sbjct: 150 ARLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFDGSKNGVFTD 199
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 31.3 bits (70), Expect = 0.43
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 214 DFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTV 268
+ +T G + DG T + + T + +S YL+ G D V
Sbjct: 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKV 85
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 30.6 bits (67), Expect = 0.68
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 213 ADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQ 272
+ F I + D + + + + + +S D +Y A V
Sbjct: 1 STFAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSII 59
Query: 273 RTRKPQVC 280
T V
Sbjct: 60 DTATNNVI 67
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 308
Score = 29.4 bits (65), Expect = 1.3
Identities = 12/108 (11%), Positives = 22/108 (20%), Gaps = 28/108 (25%)
Query: 161 TAWHSSGDYLVT----GC---------------------AAAVRVWDIHKGHAIHKMSLD 195
TAW S+ Y + G + + + S
Sbjct: 43 TAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSRSDG 102
Query: 196 KSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTH 243
+ + + A ++G V V T
Sbjct: 103 TQVSLAD---LIVLGGNAAVEQAAANAGYDVEIPFEPGRVDAGPEHTD 147
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 285
Score = 29.0 bits (64), Expect = 1.9
Identities = 10/107 (9%), Positives = 28/107 (26%), Gaps = 27/107 (25%)
Query: 161 TAWHSSGDYLVT-----GCAAAVR-----VWDIHKGHA-------IHKMSLDKSSKFSKN 203
TAW ++ + + +R W+++ + + + +
Sbjct: 40 TAWAAASSFRGSDKRGGANGGRIRLQPQVGWEVNDPDGDLRKVIRTLEEIQESFNSAAPG 99
Query: 204 TA------VWCVAFCADFTIITGDSGGFVRF----WDGKTGVQWSDV 240
+ + CA +G + + +DV
Sbjct: 100 NIKVSFADLVVLGGCAAIEKAAKAAGHNITVPFTPGRTDASQEQTDV 146
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG
{Synechococcus sp. pcc 7942 [TaxId: 1140]}
Length = 294
Score = 27.4 bits (60), Expect = 6.3
Identities = 19/126 (15%), Positives = 33/126 (26%), Gaps = 22/126 (17%)
Query: 139 QISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVT-----GCAAAVRVW----DIHKGHAI 189
+I+ GL +L+ TAW S+ Y + A +R+
Sbjct: 25 RIAASGLSISELV--------STAWDSARTYRNSDKRGGANGARIRLAPQKDWEGNEPDR 76
Query: 190 HKMSLDKSSKFSKNT-----AVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHK 244
L S T V +A +G + + +T
Sbjct: 77 LPKVLAVLEGISAATGATVADVIVLAGNVGVEQKARAAGVEIVLPFAPGRGDATAEQTDT 136
Query: 245 KDILAL 250
+ L
Sbjct: 137 ESFAVL 142
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 27.3 bits (59), Expect = 7.7
Identities = 33/326 (10%), Positives = 77/326 (23%), Gaps = 37/326 (11%)
Query: 179 RVWDIHKGHAIHKMSLDK--SSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQ 236
V+D + ++ + + VA G V D T
Sbjct: 1 YVYDADAKKLLGQIDGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDH 60
Query: 237 WSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSV 296
++ K + Y D + + +SV V
Sbjct: 61 AGEIVIPAKHAQHVPSP----YNTAFSADGKRL-----------YVANITPAASVTVIDA 105
Query: 297 NRVIHEGD---VKSLALH--GNRLYSGGLDSYLSLSYYPPKT--LVKYPCTLAQSTPVSL 349
+ + + G+ ++ +S +L+ K + A
Sbjct: 106 VSKKMLSEIDTAACVLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKD 165
Query: 350 AKDI-------QHVLLQYTSHLELWSLGSAQSTDLSSHSNTT-GVPLLSFPRLIVKMSAV 401
+ ++ Y ++ + S T + ++ +AV
Sbjct: 166 PAFVNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRPGGMQQTAV 225
Query: 402 NNATIRCSVVSNDGKYVAYSTESCVRLHSLDLDGDKPQISRIKNLPAPLFKSIFTHVLIS 461
R V+ + G ++ + + A + +S
Sbjct: 226 QAKQNRYYVLMHKGTDGSHKDPGTQVWVYDLKSKQR----VARWDLAQQKVEPLVSIQVS 281
Query: 462 ADSTLLLAVSLNGP-LYIIDLSSLEI 486
D L L ++D + +
Sbjct: 282 EDDKPLFYGLTATSDLVVMDARTGAL 307
>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40,
Sv40 [TaxId: 10633]}
Length = 348
Score = 27.1 bits (60), Expect = 8.3
Identities = 9/32 (28%), Positives = 10/32 (31%), Gaps = 3/32 (9%)
Query: 510 CKQ---YIVCADRKSHVVIWKNGQHHASLPRY 538
CK Y+ D Q LPRY
Sbjct: 241 CKADSLYVSAVDICGLFTNTSGTQQWKGLPRY 272
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 281
Score = 26.7 bits (57), Expect = 9.7
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 412 SNDGKYVAYSTESCVRLHSLDLDGDKPQISRIKNLPAP 449
+ DG+ + +S ++ + D +K + I +L +P
Sbjct: 241 NTDGRRILFSKGG--SIYIFNPDTEKIEKIEIGDLESP 276
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.408
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,572,165
Number of extensions: 116240
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 92
Length of query: 708
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 616
Effective length of database: 1,144,436
Effective search space: 704972576
Effective search space used: 704972576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)