BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12625
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 9/231 (3%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
E +LGPSGSGK+ LL +AG +P SG I +E + + + + Q+
Sbjct: 30 EFMALLGPSGSGKSTLLYTIAGIYKP-----TSGKIYFDEKDVTELPPKDRNVGLVFQNW 84
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
L +TV +++ L+ + R+ + KV +A L I N LSGGQ++R
Sbjct: 85 ALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQR 141
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
++IA L+ P ++ LDEP + LD L + L+ + + + + A L MA
Sbjct: 142 VAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMA 201
Query: 237 DYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRM 287
D + V+ EG GT P V Y + + NP +E +E ++
Sbjct: 202 DRIAVIREGEILQVGT-PDEVYYKPKYKFVGGFLGNPPMNFVEAKVEDGKL 251
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 18/215 (8%)
Query: 40 IKSKDILKDI-SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
+ SKDI DI G FV V +GPSG GK+ LL ++AG SG + I E R
Sbjct: 17 VVSKDINLDIHEGEFV-----VFVGPSGCGKSTLLRMIAGLE-----TITSGDLFIGEKR 66
Query: 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
+ D + + Q L L+V E+++ LKL ++ +V+ +A+ L +
Sbjct: 67 MNDTPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAG-AKKEVINQRVNQVAEVLQL 123
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQ 217
+ + K LSGGQ++R++I L++ PS+ LDEP + LD L +++ R
Sbjct: 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 183
Query: 218 G-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
G TMI T Q A + +AD + VL G G
Sbjct: 184 GRTMIYVTHDQVEA--MTLADKIVVLDAGRVAQVG 216
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 18/215 (8%)
Query: 40 IKSKDILKDI-SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
+ SKDI DI G FV V +GPSG GK+ LL ++AG SG + I E R
Sbjct: 17 VVSKDINLDIHEGEFV-----VFVGPSGCGKSTLLRMIAGLE-----TITSGDLFIGEKR 66
Query: 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
+ D + + Q L L+V E+++ LKL ++ +V+ +A+ L +
Sbjct: 67 MNDTPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAG-AKKEVINQRVNQVAEVLQL 123
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQ 217
+ + K LSGGQ++R++I L++ PS+ LDEP + LD L +++ R
Sbjct: 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 183
Query: 218 G-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
G TMI T Q A + +AD + VL G G
Sbjct: 184 GRTMIYVTHDQVEA--MTLADKIVVLDAGRVAQVG 216
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 18/215 (8%)
Query: 40 IKSKDILKDI-SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
+ SKDI DI G FV V +GPSG GK+ LL ++AG SG + I E R
Sbjct: 17 VVSKDINLDIHEGEFV-----VFVGPSGCGKSTLLRMIAGLE-----TITSGDLFIGEKR 66
Query: 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
+ D + + Q L L+V E+++ LKL ++ +V+ +A+ L +
Sbjct: 67 MNDTPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAG-AKKEVINQRVNQVAEVLQL 123
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQ 217
+ + K LSGGQ++R++I L++ PS+ LD+P + LD L +++ R
Sbjct: 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRL 183
Query: 218 G-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
G TMI T Q A + +AD + VL G G
Sbjct: 184 GRTMIYVTHDQVEA--MTLADKIVVLDAGRVAQVG 216
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 20/202 (9%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
E+ +LGPSGSGKT +L ++AG RP K G + I R+ D ++ + Q+
Sbjct: 42 EMVGLLGPSGSGKTTILRLIAGLERPTK-----GDVWIGGKRVTDLPPQKRNVGLVFQNY 96
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
L + +TV ++++ K + + +++V + + + + N LSGGQ++R
Sbjct: 97 ALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQR 153
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ------GTMIICTLHQPSA 230
+++A L P ++ DEP +D T + + LR Q T + T Q A
Sbjct: 154 VALARALAPRPQVLLFDEPFAAID----TQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA 209
Query: 231 SLLNMADYLYVLTEGYCTYQGT 252
L +AD + VL EG GT
Sbjct: 210 --LEVADRVLVLHEGNVEQFGT 229
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 18/222 (8%)
Query: 34 DTHSYSIKSKDI-LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
+ S S K K+ L ++S S E VILGP+G+GKT L+++AG+ P +SG I
Sbjct: 3 EIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-----DSGRI 57
Query: 93 EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR---KAKESKV 149
++ + D + + ++ Q+ L + V+++L +K R A++ K+
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
+ + D +N LT LSGG+++R+++A L++NP I+ LDEP + LD N +
Sbjct: 118 EHLLD-------RNPLT--LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 210 LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
+L + + + + + MAD + V+ +G G
Sbjct: 169 MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 20/227 (8%)
Query: 34 DTHSY--SIKSKDILKDISGVFVSKELSVILGPSGSGKT---KLLDILAGYRRPKKTETN 88
D H S S ++LK I+ E+ V++GPSGSGK+ + L++L + +
Sbjct: 5 DVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--------D 56
Query: 89 SGYIEINETRLQ----DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
G I I+ L+ + +R+E + Q L +TV ++T+A +K+ ++ R+
Sbjct: 57 EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP-MKV-RKWPREK 114
Query: 145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
E+K + D + + + LSGGQ +R++IA L P I+ DEPT+ LD
Sbjct: 115 AEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 174
Query: 205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
++ +++ +A++G ++ H+ + + D + + GY +G
Sbjct: 175 GEVLSVMKQLANEGMTMVVVTHEMGFA-REVGDRVLFMDGGYIIEEG 220
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 114/234 (48%), Gaps = 20/234 (8%)
Query: 27 SYSALYYDTHSY--SIKSKDILKDISGVFVSKELSVILGPSGSGKT---KLLDILAGYRR 81
S+ D H S S ++LK I+ E+ V++GPSGSGK+ + L++L +
Sbjct: 19 SHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-- 76
Query: 82 PKKTETNSGYIEINETRLQ----DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG 137
+ G I I+ L+ + +R+E + Q L +TV ++T+A +K+
Sbjct: 77 ------DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP-MKV- 128
Query: 138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
++ R+ E+K + D + + + LSGGQ +R++IA L P I+ DEPT+
Sbjct: 129 RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTS 188
Query: 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
LD ++ +++ +A++G ++ H+ + + D + + GY +G
Sbjct: 189 ALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA-REVGDRVLFMDGGYIIEEG 241
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 100/214 (46%), Gaps = 17/214 (7%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR-- 103
LK I+ E++ ILG +G GK+ L G +P +SG I + + R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-----SSGRILFDNKPIDYSRKG 78
Query: 104 -MLRKESCYIM---QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
M +ES I+ DN L ++ A ++KL RK +VD+ I
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRK----RVDNALKRTGIE 134
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-G 218
K+ T LS GQKKR++IA L+ P ++ LDEPT GLD + + ++KLL +M + G
Sbjct: 135 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
II H L D ++V+ EG QG
Sbjct: 195 ITIIIATHDIDIVPL-YCDNVFVMKEGRVILQGN 227
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 13/209 (6%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+LKD++ F + ++ V++G +GSGKT LL ILAG +G I ++ + D +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL------AAAGEIFLDGSP-ADPFL 78
Query: 105 LRKESCYIMQDNLLQEL-LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
LRK Y+ Q+ Q + TVEE + + + +G S K ++ + + + +S
Sbjct: 79 LRKNVGYVFQNPSSQIIGATVEEDVAFSLEI-MGLDESEMRK--RIKKVLELVGLSGLAA 135
Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
+LSGGQK+RL+IA L + + LDEP + LD + + ++L + ++G II
Sbjct: 136 ADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIIL 195
Query: 224 TLHQPSASLLNMADYLYVLTEGYCTYQGT 252
H+ L+ D++ ++ G + G+
Sbjct: 196 VTHE--LEYLDDMDFILHISNGTIDFCGS 222
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 25/202 (12%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTE---------TNSGYIEINETRLQDHRMLRKESCY 111
ILGPSG+GKT + I+AG P E +N I E R +
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR---------KIGM 86
Query: 112 IMQDNLLQELLTVEESLTVA-AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLS 170
+ Q L LT E++ ++K+ + RK +V+ +A L I N + LS
Sbjct: 87 VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK----RVEEVAKILDIHHVLNHFPRELS 142
Query: 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPS 229
GGQ++R+++A L+ +PS++ LDEP + LD + L++++ + G ++ H P
Sbjct: 143 GGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP- 201
Query: 230 ASLLNMADYLYVLTEGYCTYQG 251
A + +AD + VL +G G
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVG 223
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 17/235 (7%)
Query: 26 ISYSALYYDTH-SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
++ AL +H Y ++ + ++ D+S S E+ I+GP+G+GK+ LL +L GY P
Sbjct: 6 VTPVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH 65
Query: 85 TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
E + +N + + L + + Q + L +V E + + G R+A
Sbjct: 66 GECHLLGQNLNSWQ---PKALARTRAVMRQYSELAFPFSVSEVIQM-GRAPYGGSQDRQA 121
Query: 145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS------NPSIIFLDEPTTG 198
+ +V + D L+++ + LSGG+++R+ +A L P +FLDEPT+
Sbjct: 122 LQ-QVMAQTDCLALAQRDYRV---LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSA 177
Query: 199 LDYLNATNLVKLLRDMAHQGTMII-CTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
LD + + ++LLR + Q + + C LH + + L AD + +L +G GT
Sbjct: 178 LDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAAL-YADRIMLLAQGKLVACGT 231
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 113/258 (43%), Gaps = 34/258 (13%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
E +LGPSG GKT L +LAG +P SG I ++ + D +E + Q+
Sbjct: 30 EFVALLGPSGCGKTTTLLMLAGIYKP-----TSGEIYFDDVLVNDIPPKYREVGMVFQNY 84
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
L +TV E++ + + S+ E +V IA L I + LSGGQ++R
Sbjct: 85 ALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQR 141
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR-DMAH-QGTMIICTLH--QPSASL 232
+++A L+ P ++ DEP + LD NL ++R ++ H Q + I +++ A
Sbjct: 142 VALARALVKQPKVLLFDEPLSNLD----ANLRMIMRAEIKHLQQELGITSVYVTHDQAEA 197
Query: 233 LNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCT 292
+ MA + V +G GT D Y P N A ++ P T
Sbjct: 198 MTMASRIAVFNQGKLVQYGT--------PDEVYDSPKNMFVASFI----------GNPPT 239
Query: 293 NGKFFNANSSHNTKTVLK 310
N + S N +T+LK
Sbjct: 240 NFLRDFSVSVENKQTILK 257
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 16/221 (7%)
Query: 36 HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95
H + K L+++S V E ++ G +GSGK+ LL I+AG P SG + +
Sbjct: 13 HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-----TSGDVLYD 67
Query: 96 ETRLQDHRMLRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
R + + + R +D E + E + V N Y + V
Sbjct: 68 GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK------NFYPDRDPVPLVKKAM 121
Query: 154 D--SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+ L + K+ + LSGG+K+R++IA ++ P I+ LDEP GLD T+L++++
Sbjct: 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
G +I H +++N D + VL +G + GT
Sbjct: 182 EKWKTLGKTVILISHD-IETVINHVDRVVVLEKGKKVFDGT 221
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 16/221 (7%)
Query: 36 HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95
H + K L+++S V E ++ G +GSGK+ LL I+AG P SG + +
Sbjct: 15 HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-----TSGDVLYD 69
Query: 96 ETRLQDHRMLRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
R + + + R +D E + E + V N Y + V
Sbjct: 70 GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK------NFYPDRDPVPLVKKAM 123
Query: 154 D--SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+ L + K+ + LSGG+K+R++IA ++ P I+ LDEP GLD T+L++++
Sbjct: 124 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 183
Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
G +I H +++N D + VL +G + GT
Sbjct: 184 EKWKTLGKTVILISHD-IETVINHVDRVVVLEKGKKVFDGT 223
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 25/202 (12%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTE---------TNSGYIEINETRLQDHRMLRKESCY 111
ILGPSG+GKT + I+AG P E +N I E R +
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR---------KIGM 86
Query: 112 IMQDNLLQELLTVEESLTVA-AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLS 170
+ Q L LT E++ ++K+ + RK +V+ +A L I N + LS
Sbjct: 87 VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK----RVEEVAKILDIHHVLNHFPRELS 142
Query: 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPS 229
G Q++R+++A L+ +PS++ LDEP + LD + L++++ + G ++ H P
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP- 201
Query: 230 ASLLNMADYLYVLTEGYCTYQG 251
A + +AD + VL +G G
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVG 223
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 13/220 (5%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
Y+ ILKDI+ E +G SG GK+ L++++ P+ + SG I I+
Sbjct: 348 QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI-----PRFYDVTSGQILIDG 402
Query: 97 TRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
++D LR + + QDN+L TV+E++ + + AK +
Sbjct: 403 HNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIM 461
Query: 155 SL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
+L T LSGGQK+RLSIA L+NP I+ LDE T+ LD L + ++++
Sbjct: 462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD-LESESIIQEAL 520
Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
D+ + + H+ S + AD + V+ G+ GT
Sbjct: 521 DVLSKDRTTLIVAHRLST--ITHADKIVVIENGHIVETGT 558
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 24/228 (10%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM------LRKESC 110
E ++LGPSG GKT L ++AG P + G I I + + D ++
Sbjct: 30 EFMILLGPSGCGKTTTLRMIAGLEEPSR-----GQIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 111 YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLS 170
+ Q L +TV ++ +A LKL + R+ + +V +A+ L ++ N + LS
Sbjct: 85 MVFQSYALYPHMTVYDN--IAFPLKL-RKVPRQEIDQRVREVAELLGLTELLNRKPRELS 141
Query: 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPS 229
GGQ++R+++ ++ P + +DEP + LD + L+ + Q G I H
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-Q 200
Query: 230 ASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYV 277
+ M D + V+ G G+ D Y P+N A ++
Sbjct: 201 VEAMTMGDRIAVMNRGVLQQVGS--------PDEVYDKPANTFVAGFI 240
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 35/245 (14%)
Query: 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA 77
H ++ F++I + Y S IL +I+ E+ I+G SGSGK+ L ++
Sbjct: 1 HHDITFRNIRFR--------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ 52
Query: 78 GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------E 126
+ P+ + I+ ++ L D LR++ ++QDN+L ++ E
Sbjct: 53 RFYIPENGQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE 109
Query: 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
+ AA L + + + +E +T LSGGQ++R++IA L++N
Sbjct: 110 KVIYAAKLAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNN 159
Query: 187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
P I+ DE T+ LDY + +++ + + +G +I H+ S + AD + V+ +G
Sbjct: 160 PKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR--LSTVKNADRIIVMEKGK 216
Query: 247 CTYQG 251
QG
Sbjct: 217 IVEQG 221
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 35 THSYSIKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
T +Y + + I LK+++ E I+GPSGSGK+ +L+I+ +P + E I
Sbjct: 8 TKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNI 67
Query: 93 EINETRLQDHRMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
+ N+ + +R++ ++ Q L LLT E++ + K S + + +
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA-- 125
Query: 152 IADSLSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
+ L ++ + H LSGGQ++R++IA L +NP II D+PT LD +
Sbjct: 126 -LECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 208 VKLLRDMAHQ-GTMIICTLH 226
++LL+ + + G ++ H
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH 204
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 35 THSYSIKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
T +Y + + I LK+++ E I+GPSGSGK+ +L+I+ +P + E I
Sbjct: 8 TKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNI 67
Query: 93 EINETRLQDHRMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
+ N+ + +R++ ++ Q L LLT E++ + K S + + +
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA-- 125
Query: 152 IADSLSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
+ L ++ + H LSGGQ++R++IA L +NP II D+PT LD +
Sbjct: 126 -LECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 208 VKLLRDMAHQ-GTMIICTLH 226
++LL+ + + G ++ H
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH 204
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 35/245 (14%)
Query: 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA 77
H ++ F++I + Y S IL +I+ E+ I+G +GSGK+ L ++
Sbjct: 1 HHDITFRNIRFR--------YKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQ 52
Query: 78 GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------E 126
+ P+ + I+ ++ L D LR++ ++QDN+L ++ E
Sbjct: 53 RFYIPENGQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE 109
Query: 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
+ AA L + + + +E +T LSGGQ++R++IA L++N
Sbjct: 110 KVIYAAKLAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNN 159
Query: 187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
P I+ DE T+ LDY + +++ + + +G +I H+ S + AD + V+ +G
Sbjct: 160 PKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR--LSTVKNADRIIVMEKGK 216
Query: 247 CTYQG 251
QG
Sbjct: 217 IVEQG 221
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 30/238 (12%)
Query: 25 DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
DI++ + + Y S IL +I+ E+ I+G SGSGK+ L ++ + P+
Sbjct: 1 DITFRNIRF---RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 85 TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------ESLTVAAH 133
+ I+ ++ L D LR++ ++QDN+L ++ E + AA
Sbjct: 58 GQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 114
Query: 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193
L + + + +E +T LSGGQ++R++IA L++NP I+ D
Sbjct: 115 LAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 164
Query: 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
E T+ LDY + +++ + + +G +I H+ S + AD + V+ +G QG
Sbjct: 165 EATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQG 219
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 30/238 (12%)
Query: 25 DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
DI++ + + Y S IL +I+ E+ I+G SGSGK+ L ++ + P+
Sbjct: 7 DITFRNIRF---RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 85 TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------ESLTVAAH 133
+ I+ ++ L D LR++ ++QDN+L ++ E + AA
Sbjct: 64 GQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 120
Query: 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193
L + + + +E +T LSGGQ++R++IA L++NP I+ D
Sbjct: 121 LAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 170
Query: 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
E T+ LDY + +++ + + +G +I H+ S + AD + V+ +G QG
Sbjct: 171 EATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQG 225
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 30/238 (12%)
Query: 25 DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
DI++ + + Y S IL +I+ E+ I+G SGSGK+ L ++ + P+
Sbjct: 1 DITFRNIRF---RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 85 TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------ESLTVAAH 133
+ I+ ++ L D LR++ ++QDN+L ++ E + AA
Sbjct: 58 GQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 114
Query: 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193
L + + + +E +T LSGGQ++R++IA L++NP I+ D
Sbjct: 115 LAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 164
Query: 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
E T+ LDY + +++ + + T+II S + AD + V+ +G QG
Sbjct: 165 EATSALDYESEHVIMRNMHKICKGRTVIIIA---ARLSTVKNADRIIVMEKGKIVEQG 219
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 30/238 (12%)
Query: 25 DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
DI++ + + Y S IL +I+ E+ I+G SGSGK+ L ++ + P+
Sbjct: 7 DITFRNIRF---RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 85 TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------ESLTVAAH 133
+ I+ ++ L D LR++ ++QDN+L ++ E + AA
Sbjct: 64 GQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 120
Query: 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193
L + + + +E +T LSGGQ++R++IA L++NP I+ D
Sbjct: 121 LAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 170
Query: 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
E T+ LDY + +++ + + T+II S + AD + V+ +G QG
Sbjct: 171 EATSALDYESEHVIMRNMHKICKGRTVIIIA---ARLSTVKNADRIIVMEKGKIVEQG 225
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 111/238 (46%), Gaps = 30/238 (12%)
Query: 25 DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
DI++ + + Y S IL +I+ E+ I+G SGSGK+ L ++ + P+
Sbjct: 7 DITFRNIRF---RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 85 TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------ESLTVAAH 133
+ I+ ++ L D LR++ ++QDN+L ++ E + AA
Sbjct: 64 GQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 120
Query: 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193
L + + + +E +T LSGGQ++R++IA L++NP I+ D
Sbjct: 121 LAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 170
Query: 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
+ T+ LDY + +++ + + +G +I H+ S + AD + V+ +G QG
Sbjct: 171 QATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQG 225
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 26/221 (11%)
Query: 42 SKDILKDISGVFVSKELSVIL--GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99
S+ IL+DIS F ++ S+I GPSG GK+ + +L + +P E I+ L
Sbjct: 14 SEQILRDIS--FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA---------KESKVD 150
++ R + ++ QD+ + T+ E+LT L Y+ + S V+
Sbjct: 72 EN---WRSQIGFVSQDSAIM-AGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVE 123
Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210
++ D L+ + + +SGGQ++RL+IA L NP I+ LDE T LD + + + K
Sbjct: 124 NMPDQLNTEVGERGV--KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 211 LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
L D +G + H+ S + AD +Y + +G T G
Sbjct: 182 L-DSLMKGRTTLVIAHR--LSTIVDADKIYFIEKGQITGSG 219
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 8/180 (4%)
Query: 50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKES 109
G FVS I GPSGSGK+ L+I+ +P + E I+ N+ + +R++
Sbjct: 30 EGEFVS-----IXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 110 C-YIMQDNLLQELLTVEESLTVAAHLK-LGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
++ Q L LLT E++ + K G + ++ ++ + + N
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPN 144
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLH 226
LSGGQ++R++IA L +NP II DEPT LD + +LL+ + + G ++ H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 116/238 (48%), Gaps = 15/238 (6%)
Query: 20 NLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
N+L ++ +S + ++ Y + S +L+ +S + ++G SG GK+ ++ +L
Sbjct: 1025 NMLEGNVQFSGVVFN---YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
Query: 79 YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN 138
+ P S +++ E + + + LR + + Q+ +L + ++ E++ + ++ +
Sbjct: 1082 FYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSRVVS 1137
Query: 139 --QYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
+ R AKE+ + DSL +T LSGGQK+R++IA L+ P I+ LDE
Sbjct: 1138 YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE 1197
Query: 195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
T+ LD + +V+ D A +G I H+ S + AD + V+ G GT
Sbjct: 1198 ATSALD-TESEKVVQEALDKAREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGT 1252
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 28/240 (11%)
Query: 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY 79
NL F++I +S Y + K ILK ++ S + ++G SG GK+ + ++
Sbjct: 387 NLEFKNIHFS---YPSR----KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439
Query: 80 RRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-- 137
P + I+ + R + R LR+ + Q+ +L + T+A +++ G
Sbjct: 440 YDPLDGMVS---IDGQDIRTINVRYLREIIGVVSQEPVL-------FATTIAENIRYGRE 489
Query: 138 ----NQYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIF 191
++ + KE+ L T LSGGQK+R++IA L+ NP I+
Sbjct: 490 DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL 549
Query: 192 LDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
LDE T+ LD + +V+ D A +G I H+ S + AD + G QG
Sbjct: 550 LDEATSALD-TESEAVVQAALDKAREGRTTIVIAHRLST--VRNADVIAGFDGGVIVEQG 606
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 116/238 (48%), Gaps = 15/238 (6%)
Query: 20 NLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
N+L ++ +S + ++ Y + S +L+ +S + ++G SG GK+ ++ +L
Sbjct: 1025 NMLEGNVQFSGVVFN---YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
Query: 79 YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN 138
+ P S +++ E + + + LR + + Q+ +L + ++ E++ + ++ +
Sbjct: 1082 FYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSRVVS 1137
Query: 139 --QYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
+ R AKE+ + DSL +T LSGGQK+R++IA L+ P I+ LDE
Sbjct: 1138 YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE 1197
Query: 195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
T+ LD + +V+ D A +G I H+ S + AD + V+ G GT
Sbjct: 1198 ATSALD-TESEKVVQEALDKAREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGT 1252
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 28/240 (11%)
Query: 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY 79
NL F++I +S Y + K ILK ++ S + ++G SG GK+ + ++
Sbjct: 387 NLEFKNIHFS---YPSR----KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439
Query: 80 RRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-- 137
P + I+ + R + R LR+ + Q+ +L + T+A +++ G
Sbjct: 440 YDPLDGMVS---IDGQDIRTINVRYLREIIGVVSQEPVL-------FATTIAENIRYGRE 489
Query: 138 ----NQYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIF 191
++ + KE+ L T LSGGQK+R++IA L+ NP I+
Sbjct: 490 DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL 549
Query: 192 LDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
LDE T+ LD + +V+ D A +G I H+ S + AD + G QG
Sbjct: 550 LDEATSALD-TESEAVVQAALDKAREGRTTIVIAHRLST--VRNADVIAGFDGGVIVEQG 606
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99
I+ +ILK IS E I+G SGSGK+ LL IL P + + E++ T
Sbjct: 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNE 73
Query: 100 QDHRMLR-KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
++ +LR ++ ++ Q + L LT E++ V LK+G + ++AKE + + + L +
Sbjct: 74 KELSLLRNRKLGFVFQFHYLIPELTALENVIVPM-LKMG-KPKKEAKE-RGEYLLSELGL 130
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
+ LSGG+++R++IA L + P ++F DEPT LD N ++ + + G
Sbjct: 131 GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 219 TMIICTLHQ 227
T I+ H+
Sbjct: 191 TSIVMVTHE 199
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 34/260 (13%)
Query: 11 LKKSPRKHFN--LLFQDISY-SALYYDTHSYSIKSKD---ILKDISGVFVSKELSVILGP 64
L++ P+ FN ++ + S+ AL + ++ ++ I +D S S ++ ++GP
Sbjct: 319 LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 378
Query: 65 SGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHRMLRKESCYIMQDNLLQELL 122
SGSGK+ +L +L P SG I ++ + R + LR + + Q+ +L
Sbjct: 379 SGSGKSTVLSLLLRLYDPA-----SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF--- 430
Query: 123 TVEESLTVAAHLKLG--NQYSRKAKE-SKVDSIADSLSI----STCKNTLTKH----LSG 171
S ++A ++ G + S A+E +V +A++++ NT+ LSG
Sbjct: 431 ----SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG 486
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
GQK+R++IA LL NP I+ LDE T+ LD N LV+ D G ++ H+ S
Sbjct: 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEY-LVQEALDRLMDGRTVLVIAHR--LS 543
Query: 232 LLNMADYLYVLTEGYCTYQG 251
+ A+ + VL +G T G
Sbjct: 544 TIKNANMVAVLDQGKITEYG 563
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 33/209 (15%)
Query: 58 LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL 117
L +LG +GSGK+ L++++ P++ +++ +L+D LR + Q+
Sbjct: 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD---LRGHISAVPQE-- 425
Query: 118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT----------- 166
TV S T+ +LK G + ++ D I ++ I+ + +
Sbjct: 426 -----TVLFSGTIKENLKWGRE------DATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 167 ---KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
++ SGGQK+RLSIA L+ P ++ LD+ T+ +D + ++ L+ T I
Sbjct: 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFII 534
Query: 224 TLHQPSASLLNMADYLYVLTEGYCTYQGT 252
T P+A L AD + VL EG GT
Sbjct: 535 TQKIPTALL---ADKILVLHEGKVAGFGT 560
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 125/260 (48%), Gaps = 34/260 (13%)
Query: 11 LKKSPRKHFN--LLFQDISY-SALYYDTHSYSIKSKD---ILKDISGVFVSKELSVILGP 64
L++ P+ FN ++ + S+ AL + ++ ++ I +D S S ++ ++GP
Sbjct: 350 LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 409
Query: 65 SGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHRMLRKESCYIMQDNLLQELL 122
SGSGK+ +L +L P SG I ++ + R + LR + + Q+ +L
Sbjct: 410 SGSGKSTVLSLLLRLYDPA-----SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF--- 461
Query: 123 TVEESLTVAAHLKLG--NQYSRKAKE-SKVDSIADSLSI----STCKNTLTKH----LSG 171
S ++A ++ G + S A+E +V +A++++ NT+ LSG
Sbjct: 462 ----SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG 517
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
GQK+R++IA LL NP I+ LDE T+ LD N LV+ D G ++ H S
Sbjct: 518 GQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHH--LS 574
Query: 232 LLNMADYLYVLTEGYCTYQG 251
+ A+ + VL +G T G
Sbjct: 575 TIKNANMVAVLDQGKITEYG 594
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 12/212 (5%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
+KD+S E V+LGPSG GKT L +AG P + + YIE N + +
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQI---YIEDNLVADPEKGVF 78
Query: 106 ----RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC 161
++ + Q L TV ++ +A LKL + ++ + +V +A+ L ++
Sbjct: 79 VPPKERDVAXVFQSYALYPHXTVYDN--IAFPLKL-RKVPKQEIDKRVREVAEXLGLTEL 135
Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTM 220
N + LSGGQ++R+++ ++ P + DEP + LD L+ + Q G
Sbjct: 136 LNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVT 195
Query: 221 IICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
I H D + V +G GT
Sbjct: 196 TIYVTHD-QVEAXTXGDRIAVXNKGELQQVGT 226
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 8/196 (4%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
E V+LGPSG GKT L ++AG P + G ++ +D + + Q
Sbjct: 38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI-----SMVFQSY 92
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
+ +TV E++ +K ++ + + +V A+ L I N LSGGQ++R
Sbjct: 93 AVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQR 149
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
+++A ++ P ++ +DEP + LD + ++ + + + + + M
Sbjct: 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 209
Query: 237 DYLYVLTEGYCTYQGT 252
D + V+ G G+
Sbjct: 210 DRIAVMNRGQLLQIGS 225
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 8/196 (4%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
E V+LGPSG GKT L ++AG P + G ++ +D + + Q
Sbjct: 39 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI-----SMVFQSY 93
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
+ +TV E++ +K ++ + + +V A+ L I N LSGGQ++R
Sbjct: 94 AVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQR 150
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
+++A ++ P ++ +DEP + LD + ++ + + + + + M
Sbjct: 151 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 210
Query: 237 DYLYVLTEGYCTYQGT 252
D + V+ G G+
Sbjct: 211 DRIAVMNRGQLLQIGS 226
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 16/221 (7%)
Query: 40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-NETR 98
I K+ILK IS E+ ++GP+G+GKT L I++ +P +SG + + +
Sbjct: 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-----SSGIVTVFGKNV 79
Query: 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
+++ +RK Y+ ++ + E L A Y+ + E + + + + I
Sbjct: 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF-----YASSSSEIE-EMVERATEI 133
Query: 159 STCKNTLTKHLS---GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
+ + +S G ++L IA L+ NP + LDEPT+GLD LNA + K+L+ +
Sbjct: 134 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256
+G I+ + H + + D + ++ G GTV L
Sbjct: 194 QEGLTILVSSHN-MLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 29 SALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-- 86
+AL+ S S ++ +L DIS E+ I+G SG GKT LL LAG+ +P E
Sbjct: 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 87 -------TNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQ 139
+ + + + E RL Y++Q+ +L LTV ++ LGN
Sbjct: 63 LSGKTIFSKNTNLPVRERRL----------GYLVQEGVLFPHLTVYRNIAYG----LGNG 108
Query: 140 YSRKAKE-SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
R A+E +++++ + IS LSGGQ++R ++A L +P +I LDEP +
Sbjct: 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSA 168
Query: 199 LD 200
LD
Sbjct: 169 LD 170
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 109/229 (47%), Gaps = 36/229 (15%)
Query: 46 LKDISGVFVS---KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL--Q 100
K + GV +S ++++I+GP+GSGK+ L++++ +G+++ +E R+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVI------------TGFLKADEGRVYFE 67
Query: 101 DHRMLRKESCYIMQDNLLQELLTVE--ESLTVAAHLKLGN--------------QYSRKA 144
+ + KE + +++ T + + +TV +L +G ++ K
Sbjct: 68 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 127
Query: 145 KE--SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
+E K I + L +S + LSGGQ K + I L++NP +I +DEP G+
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
A ++ + ++ +G + H+ +LN D+LYV+ G +G
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 109/229 (47%), Gaps = 36/229 (15%)
Query: 46 LKDISGVFVS---KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL--Q 100
K + GV +S ++++I+GP+GSGK+ L++++ +G+++ +E R+ +
Sbjct: 20 FKALDGVSISVCKGDVTLIIGPNGSGKSTLINVI------------TGFLKADEGRVYFE 67
Query: 101 DHRMLRKESCYIMQDNLLQELLTVE--ESLTVAAHLKLGN--------------QYSRKA 144
+ + KE + +++ T + + +TV +L +G ++ K
Sbjct: 68 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE 127
Query: 145 KE--SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
+E K I + L +S + LSGGQ K + I L++NP +I +DEP G+
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
A ++ + ++ +G + H+ +LN D+LYV+ G +G
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 127/286 (44%), Gaps = 34/286 (11%)
Query: 15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLD 74
PR H L +D + Y +++ + ++K+ G V I+GP+G+GK+ +
Sbjct: 16 PRSHXEQLEEDCVHR---YGVNAFVLYRLPVVKE--GXVVG-----IVGPNGTGKSTAVK 65
Query: 75 ILAGYRRPKKTETNSGYIEI------NETRLQDHRMLRKESCYIMQDNLLQELLTVEESL 128
ILAG P N + + NE + ++ E +++ + +L+
Sbjct: 66 ILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV-DLIPKAVKG 124
Query: 129 TVAAHLKLGNQYSRKAKES-KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNP 187
V LK KA E+ K++ + +L + +HLSGG+ +R++IA LL N
Sbjct: 125 KVIELLK-------KADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNA 177
Query: 188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247
+ F DEP++ LD N + +R ++ +G ++ H A L ++D ++V+
Sbjct: 178 TFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD-LAVLDYLSDIIHVVYGEPG 236
Query: 248 TY------QGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRM 287
Y +GT G+ +L GY N Y I+ + +R+
Sbjct: 237 VYGIFSQPKGTRNGINEFLR--GYLKDENVRFRPYEIKFTKTGERV 280
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 89/229 (38%), Gaps = 29/229 (12%)
Query: 26 ISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT 85
++Y L D S+ ++ + G E+ I+GP+G GKT + LAG P
Sbjct: 288 VTYPRLVKDYGSFRLEVE------PGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEP--- 338
Query: 86 ETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK 145
G IE + T + + YI D TV E L+ KL + + +
Sbjct: 339 --TEGKIEWDLT-------VAYKPQYIKADYEG----TVYELLSKIDASKLNSNFYKT-- 383
Query: 146 ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
+ L I + LSGG+ +R++IA LL + I LDEP+ LD
Sbjct: 384 -----ELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 438
Query: 206 NLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254
+ + +R + + + + ++D L V Y +P
Sbjct: 439 AVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEGEPGKYGRALP 487
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 109/228 (47%), Gaps = 36/228 (15%)
Query: 47 KDISGVFVS---KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL--QD 101
K + GV +S ++++I+GP+GSGK+ L++++ +G+++ +E R+ ++
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVI------------TGFLKADEGRVYFEN 68
Query: 102 HRMLRKESCYIMQDNLLQELLTVE--ESLTVAAHLKLGN--------------QYSRKAK 145
+ KE + +++ T + + +TV +L +G ++ K +
Sbjct: 69 KDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEE 128
Query: 146 E--SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
E K I + L +S + LSGGQ K + I L++NP +I +D+P G+
Sbjct: 129 EMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
A ++ + ++ +G + H+ +LN D+LYV+ G +G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 20/202 (9%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD---HRMLRKESCYIM 113
++ ++G +G+GKT L +AG R +K G I N + + H + R +
Sbjct: 33 QIVTLIGANGAGKTTTLSAIAGLVRAQK-----GKIIFNGQDITNKPAHVINRXGIALVP 87
Query: 114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-STCKNTLTK---HL 169
+ + LTV E+L A Y+RK KE + S+ K L + L
Sbjct: 88 EGRRIFPELTVYENLXXGA-------YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTL 140
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229
SGG+++ L+I L S P ++ DEP+ GL + + + ++++ + +GT I+ + Q +
Sbjct: 141 SGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL-VEQNA 199
Query: 230 ASLLNMADYLYVLTEGYCTYQG 251
L +A Y YVL G +G
Sbjct: 200 LGALKVAHYGYVLETGQIVLEG 221
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 25/235 (10%)
Query: 25 DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
+I + +++ SY K K +LKDI+ + ++GP+GSGKT ++++L + +
Sbjct: 354 EIEFKNVWF---SYD-KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409
Query: 85 TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN------ 138
+ I+I + + LR ++QD +L S TV +LK GN
Sbjct: 410 GQILVDGIDIRKIK---RSSLRSSIGIVLQDTILF-------STTVKENLKYGNPGATDE 459
Query: 139 QYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
+ AK + D L T + LS GQ++ L+I L+NP I+ LDE T
Sbjct: 460 EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519
Query: 197 TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
+ +D ++ + + T II H+ + + AD + VL +G G
Sbjct: 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIA-HR--LNTIKNADLIIVLRDGEIVEMG 571
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 43/264 (16%)
Query: 4 EEAELQDLKKSPRKHFN---LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV 60
EE E++DL + F + F+++ +S Y D ++ L+D+S + +
Sbjct: 34 EETEVKDLPGAGPLRFQKGRIEFENVHFS--YAD-------GRETLQDVSFTVMPGQTLA 84
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLL 118
++GPSG+GK+ +L +L + + +SG I I+ + LR + QD +L
Sbjct: 85 LVGPSGAGKSTILRLLFRF-----YDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL 139
Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-----------STCKNTLTK 167
+ T+A +++ G A +V++ A + I T
Sbjct: 140 -------FNDTIADNIRYGRV---TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGL 189
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQ 227
LSGG+K+R++IA +L P II LDE T+ LD N + L + T I+ H+
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVA-HR 248
Query: 228 PSASLLNMADYLYVLTEGYCTYQG 251
S +++N AD + V+ +G +G
Sbjct: 249 LS-TVVN-ADQILVIKDGCIVERG 270
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 20/173 (11%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119
+LG +G GK+ LLD+L G RP + G IE+ ++ + Y + D +L
Sbjct: 35 AVLGQNGCGKSTLLDLLLGIHRPIQ-----GKIEVYQSIGFVPQFFSSPFAYSVLDIVL- 88
Query: 120 ELLTVEESLTVAAHLKLGNQYSR-KAKESKVDSIA-DSLSISTCKNTLTKHLSGGQKKRL 177
+ + H+ N +++ K+ + +V A D L+++ LSGGQ++ +
Sbjct: 89 --------MGRSTHI---NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLI 137
Query: 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPS 229
IA + S +I LDEPT+ LD N ++ LL D+A Q ++ T HQP+
Sbjct: 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 96/200 (48%), Gaps = 10/200 (5%)
Query: 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
+ ++ V+LGP+G+GK+ L+++AG +P + G + +N + R+ ++
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKP-----DRGEVRLNGADITPLPPERRGIGFVP 76
Query: 114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173
QD L L+V ++ R ++ +V +A+ L I+ + LSGG+
Sbjct: 77 QDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGE 131
Query: 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL 233
++R+++A L+ P ++ LDEP + +D L++ LR + + + I +
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191
Query: 234 NMADYLYVLTEGYCTYQGTV 253
+AD + V+ G +G +
Sbjct: 192 MLADEVAVMLNGRIVEKGKL 211
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 5/194 (2%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD-NLLQ 119
++G SG+GK+ L+ + RP + E+ + R++ I Q NLL
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 95
Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179
VA L+L N + K +V + + + ++ +LSGGQK+R++I
Sbjct: 96 SRTVFG---NVALPLELDNTPKDEVKR-RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 151
Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL 239
A L SNP ++ DE T+ LD ++++LL+D+ + + I + + + D +
Sbjct: 152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCV 211
Query: 240 YVLTEGYCTYQGTV 253
V++ G Q TV
Sbjct: 212 AVISNGELIEQDTV 225
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR 103
+ILK +S + ++GPSG GK+ ++ +L R T +I+ +E + +
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALL---ERFYDTLGGEIFIDGSEIKTLNPE 1149
Query: 104 MLRKESCYIMQDNLLQELLTVEE--------SLTVAAHLKLGNQYSRKAKESKVDSIADS 155
R + + Q+ L + E S+T+A Q A+ + + +
Sbjct: 1150 HTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA-------QVEEAARLANIHNFIAE 1202
Query: 156 L--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
L T LSGGQK+R++IA L+ NP I+ LDE T+ LD + +V+ D
Sbjct: 1203 LPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEKVVQEALD 1261
Query: 214 MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
A +G I H+ + +++N AD + V++ G +GT
Sbjct: 1262 RAREGRTCIVIAHRLN-TVMN-ADCIAVVSNGTIIEKGT 1298
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 7/172 (4%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119
++G SG GK+ ++ +L Y K + +++ + L+ LRK + Q+ L
Sbjct: 448 ALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLE---FLRKNVAVVSQEPALF 504
Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRL 177
T+EE++++ + K + + +L +T LSGGQK+R+
Sbjct: 505 NC-TIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563
Query: 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229
+IA L+ NP I+ LDE T+ LD + +V+ D A +G I H+ S
Sbjct: 564 AIARALVRNPKILLLDEATSALDA-ESEGIVQQALDKAAKGRTTIIIAHRLS 614
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 5/194 (2%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD-NLLQ 119
++G SG+GK+ L+ + RP + E+ + R++ I Q NLL
Sbjct: 59 VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLS 118
Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179
VA L+L N + K +V + + + ++ +LSGGQK+R++I
Sbjct: 119 SRTVFG---NVALPLELDNTPKDEVKR-RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174
Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL 239
A L SNP ++ D+ T+ LD ++++LL+D+ + + I + + + D +
Sbjct: 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCV 234
Query: 240 YVLTEGYCTYQGTV 253
V++ G Q TV
Sbjct: 235 AVISNGELIEQDTV 248
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 5/194 (2%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD-NLLQ 119
++G SG+GK+ L+ + RP + E+ + R++ I Q NLL
Sbjct: 59 VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 118
Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179
VA L+L N + K +V + + + ++ +LSGGQK+R++I
Sbjct: 119 SRTVFG---NVALPLELDNTPKDEVKR-RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174
Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL 239
A L SNP ++ D+ T+ LD ++++LL+D+ + + I + + + D +
Sbjct: 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCV 234
Query: 240 YVLTEGYCTYQGTV 253
V++ G Q TV
Sbjct: 235 AVISNGELIEQDTV 248
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 110/229 (48%), Gaps = 28/229 (12%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
T +Y K K L +S + ++G SGSGK+ + ++ + + +SG I +
Sbjct: 348 TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-----YDVDSGSICL 402
Query: 95 NETRLQDHRM--LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--- 148
+ ++D+++ LR+ + Q+ +L + T+ ++ AA +Y+R+ E
Sbjct: 403 DGHDVRDYKLTNLRRHFALVSQNVHLFND--TIANNIAYAAE----GEYTREQIEQAARQ 456
Query: 149 ------VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
++++ L +N + LSGGQ++R++IA LL + ++ LDE T+ LD
Sbjct: 457 AHAMEFIENMPQGLDTVIGENGTS--LSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
+ + L ++ T+++ H+ S + AD + V+ EG +G
Sbjct: 515 SERAIQAALDELQKNKTVLVIA-HRLST--IEQADEILVVDEGEIIERG 560
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 23/190 (12%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY-IEI-NETRLQDHR 103
L +SG + E+ ++GP+G+GK+ LL +AG K + +G +E + T+L HR
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
Y+ Q V LT+ H K + ++ +A +L++
Sbjct: 76 ------AYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLG 121
Query: 164 TLTKHLSGGQKKRLSIALELL-----SNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAH 216
T LSGG+ +R+ +A +L +NP+ ++ LD+P LD + L K+L ++
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQ 181
Query: 217 QGTMIICTLH 226
QG I+ + H
Sbjct: 182 QGLAIVMSSH 191
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 23/190 (12%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY-IEI-NETRLQDHR 103
L +SG + E+ ++GP+G+GK+ LL AG K + +G +E + T+L HR
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
Y+ Q V LT+ H K + ++ +A +L++
Sbjct: 76 ------AYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLG 121
Query: 164 TLTKHLSGGQKKRLSIALELL-----SNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAH 216
T LSGG+ +R+ +A +L +NP+ ++ LDEP LD + L K+L ++
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQ 181
Query: 217 QGTMIICTLH 226
QG I+ + H
Sbjct: 182 QGLAIVXSSH 191
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 2/149 (1%)
Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
R+LR + Q L +TV E++ A LG A+E + +A +
Sbjct: 89 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG-LSKHDARERALKYLAKVGIDERAQ 147
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
HLSGGQ++R+SIA L P ++ DEPT+ LD ++++++ +A +G ++
Sbjct: 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207
Query: 223 CTLHQPSASLLNMADYLYVLTEGYCTYQG 251
H+ + +++ ++ L +G +G
Sbjct: 208 VVTHEMGFA-RHVSSHVIFLHQGKIEEEG 235
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 27/239 (11%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
FQD+S++ Y H + +L+ ++ +++ ++GP+GSGK+ + +L +P
Sbjct: 19 FQDVSFA---YPNH----PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 83 KKTETNSGYIEINETRLQ-DHRMLRKESCYIMQDNLL-----QELLTVEESLTVAAHLKL 136
T + E +Q DH L + + Q+ LL +E + LT ++
Sbjct: 72 ----TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE--NIAYGLTRTPTME- 124
Query: 137 GNQYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
+ + A ES T LSGGQ++ +++A L+ P ++ LD+
Sbjct: 125 --EITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQ 182
Query: 195 PTTGLDYLNATNLVKLLRDMAHQGT-MIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
T+ LD N + +LL + + ++ HQ SL A ++ L EG QGT
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ--LSLAERAHHILFLKEGSVCEQGT 239
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 23/190 (12%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY-IEI-NETRLQDHR 103
L +SG + E+ ++GP+G+GK+ LL +AG K + +G +E + T+L HR
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
Y+ Q V LT+ H K + ++ +A +L++
Sbjct: 76 ------AYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLG 121
Query: 164 TLTKHLSGGQKKRLSIALELL-----SNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAH 216
T LSGG+ +R+ +A +L +NP+ ++ LD+P LD + L K+L ++
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQ 181
Query: 217 QGTMIICTLH 226
QG I+ + H
Sbjct: 182 QGLAIVMSSH 191
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 27/219 (12%)
Query: 33 YDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
Y +++ + I+KD G+ V I+GP+G+GKT + ILAG P E N +
Sbjct: 101 YGVNAFVLYRLPIVKD--GMVVG-----IVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 93 EI------NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE 146
+ NE + R+ E +++ + +LL V LK K
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYV-DLLPKAVKGKVRELLK---------KV 203
Query: 147 SKVDSIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
+V + + +N L + LSGG+ +R++IA LL F DEP++ LD
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242
+ +++R +A++G ++ H A L ++D ++V+
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHD-LAVLDYLSDVIHVV 301
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 29/192 (15%)
Query: 26 ISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT 85
+ Y L D S+ ++ + G E+ I+GP+G GKT + +LAG P
Sbjct: 358 VEYPRLVKDYGSFKLEVE------PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--- 408
Query: 86 ETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK 145
G +E + T + ++ E + + ELL+ +S KL + + +
Sbjct: 409 --TEGKVEWDLTVAYKPQYIKAE-----YEGTVYELLSKIDSS------KLNSNFYKT-- 453
Query: 146 ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
+ L I + + LSGG+ +R++IA LL + I LDEP+ LD
Sbjct: 454 -----ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 508
Query: 206 NLVKLLRDMAHQ 217
+ + +R + +
Sbjct: 509 AVSRAIRHLMEK 520
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 27/219 (12%)
Query: 33 YDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
Y +++ + I+KD G+ V I+GP+G+GKT + ILAG P E N +
Sbjct: 87 YGVNAFVLYRLPIVKD--GMVVG-----IVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 139
Query: 93 EI------NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE 146
+ NE + R+ E +++ + +LL V LK K
Sbjct: 140 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYV-DLLPKAVKGKVRELLK---------KV 189
Query: 147 SKVDSIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
+V + + +N L + LSGG+ +R++IA LL F DEP++ LD
Sbjct: 190 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 249
Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242
+ +++R +A++G ++ H A L ++D ++V+
Sbjct: 250 RLKVARVIRRLANEGKAVLVVEHD-LAVLDYLSDVIHVV 287
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 29/192 (15%)
Query: 26 ISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT 85
+ Y L D S+ ++ + G E+ I+GP+G GKT + +LAG P
Sbjct: 344 VEYPRLVKDYGSFKLEVE------PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--- 394
Query: 86 ETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK 145
G +E + T + ++ E + + ELL+ +S KL + + +
Sbjct: 395 --TEGKVEWDLTVAYKPQYIKAEY-----EGTVYELLSKIDSS------KLNSNFYKT-- 439
Query: 146 ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
+ L I + + LSGG+ +R++IA LL + I LDEP+ LD
Sbjct: 440 -----ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 494
Query: 206 NLVKLLRDMAHQ 217
+ + +R + +
Sbjct: 495 AVSRAIRHLMEK 506
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 15/233 (6%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
FQD+S++ Y H + +L+ ++ +++ ++GP+GSGK+ + +L +P
Sbjct: 19 FQDVSFA---YPNH----PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 83 KKTETNSGYIEINETRLQ-DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS 141
T + E +Q DH L + + Q+ LL E + +
Sbjct: 72 ----TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEIT 127
Query: 142 RKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199
A ES T LSGGQ++ +++A L+ P ++ LD T+ L
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 200 DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
D N + +LL + + + + Q SL A ++ L EG QGT
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQ-QLSLAERAHHILFLKEGSVCEQGT 239
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 23/190 (12%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI--EINETRLQDHR 103
L +SG + E+ ++GP+G+GK+ LL AG K + +G + T+L HR
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
Y+ Q V LT+ H K + ++ +A +L++
Sbjct: 76 ------AYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLG 121
Query: 164 TLTKHLSGGQKKRLSIALELL-----SNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAH 216
T LSGG+ +R+ +A +L +NP+ ++ LDEP LD + L K+L +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 217 QGTMIICTLH 226
QG I+ + H
Sbjct: 182 QGLAIVXSSH 191
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 17/238 (7%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
SI + ILK ++ V E+ ++GP+G+GK+ L ILAG P+ T + E
Sbjct: 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGEILLDGENI 69
Query: 99 LQ---DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
L+ D R RK Q + +T+ L +A KLG + +KV +
Sbjct: 70 LELSPDERA-RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALEL 128
Query: 156 LSI--STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
L S L + SGG+KKR I L+ P+ LDE +GLD + + +
Sbjct: 129 LDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNA 188
Query: 214 MAHQ--GTMIICTLHQPSASLLN--MADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQC 267
M G ++I + +LN D ++V+ +G G P L L GY+
Sbjct: 189 MRGPNFGALVITHYQR----ILNYIQPDKVHVMMDGRVVATGG-PELALELEAKGYEW 241
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 41/246 (16%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
FQD+S++ Y H + +L+ ++ +++ ++GP+GSGK+ + +L +P
Sbjct: 19 FQDVSFA---YPNH----PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 83 KKTETNSGYIEINETRLQ-DHRMLRKESCYIMQDNL-------------LQELLTVEESL 128
T + E +Q DH L + + Q+ L L T+EE
Sbjct: 72 ----TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEIT 127
Query: 129 TVAAHLKLGNQYSR--KAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
VA + S + +++V + L++ GQ++ +++A L+
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLAV-------------GQRQAVALARALIRK 174
Query: 187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
P ++ LD T+ LD N + +LL + + + + Q SL A ++ L EG
Sbjct: 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ-QLSLAERAHHILFLKEGS 233
Query: 247 CTYQGT 252
QGT
Sbjct: 234 VCEQGT 239
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 110/247 (44%), Gaps = 43/247 (17%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
FQD+S++ Y + +L+ ++ E++ ++GP+GSGK+ + +L +P
Sbjct: 17 FQDVSFA---YPNRPDVL----VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 69
Query: 83 KKTETNSGYIEINETRLQ--DHRMLRKESCYI----------MQDNL---LQELLTVEES 127
G + ++ L +HR L ++ + +Q+N+ L + T+EE
Sbjct: 70 -----TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE- 123
Query: 128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNP 187
AA +K G D+ D LSGGQ++ +++A L+ P
Sbjct: 124 -ITAAAVKSGAHSFISGLPQGYDTEVDEAG---------SQLSGGQRQAVALARALIRKP 173
Query: 188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMIICTLHQPSASLLNMADYLYVLTEG 245
++ LD+ T+ LD + + +LL + + ++++ T H SL+ AD++ L G
Sbjct: 174 CVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH---LSLVEQADHILFLEGG 230
Query: 246 YCTYQGT 252
GT
Sbjct: 231 AIREGGT 237
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 25/192 (13%)
Query: 33 YDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
Y +IK+ D IS + ++ I+G S SGK+ +++ + P SG +
Sbjct: 14 YLVREGTIKAAD---GISLDILENSVTAIVGESASGKSTIIEAMTKTL-PPNGRILSGRV 69
Query: 93 -----EINETRLQDHRMLRKESCYIMQDNLLQEL---LTVEESL--TVAAHLKLGNQYS- 141
++ R ++ R +R + ++ Q L + V E TV AH G ++S
Sbjct: 70 LYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAH---GVRWSH 126
Query: 142 ----RKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
KA E K+ + L+ N+ LSGG K+R+ IAL LL +P ++ LDEPT+
Sbjct: 127 SELIEKASE-KLRMV--RLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTS 183
Query: 198 GLDYLNATNLVK 209
LD L ++++
Sbjct: 184 ALDVLTQAHIIQ 195
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 109/230 (47%), Gaps = 28/230 (12%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
T +Y + L++I+ + + ++G SGSGK+ + ++ + + + G I +
Sbjct: 348 TFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-----YDIDEGEILM 402
Query: 95 NETRLQDHRM--LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--- 148
+ L+++ + LR + + Q+ +L + TV ++ A QYSR+ E
Sbjct: 403 DGHDLREYTLASLRNQVALVSQNVHLFND--TVANNIAYART----EQYSREQIEEAARM 456
Query: 149 ------VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
++ + + L +N + LSGGQ++R++IA LL + I+ LDE T+ LD
Sbjct: 457 AYAMDFINKMDNGLDTVIGENGVL--LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ + L ++ T ++ H+ S + AD + V+ +G +GT
Sbjct: 515 SERAIQAALDELQKNRTSLVIA-HRLST--IEKADEIVVVEDGVIVERGT 561
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 110/230 (47%), Gaps = 28/230 (12%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
T +Y + L++I+ + + ++G SGSGK+ + ++ + + + G+I +
Sbjct: 348 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-----YDIDEGHILM 402
Query: 95 NETRLQDHRM--LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--- 148
+ L+++ + LR + + Q+ +L + TV ++ A +YSR+ E
Sbjct: 403 DGHDLREYTLASLRNQVALVSQNVHLFND--TVANNIAYART----EEYSREQIEEAARM 456
Query: 149 ------VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
++ + + L +N + LSGGQ++R++IA LL + I+ LDE T+ LD
Sbjct: 457 AYAMDFINKMDNGLDTIIGENGVL--LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ + L ++ T ++ H+ S + AD + V+ +G +GT
Sbjct: 515 SERAIQAALDELQKNRTSLVIA-HRLST--IEQADEIVVVEDGIIVERGT 561
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEIN 95
++S+ +LKDI+ +L + G +G+GKT LL ++ G P + + +SG I
Sbjct: 45 NFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 104
Query: 96 ETRLQDHRMLRKESCYIMQDNLLQELLTVE------ESLTVAAHLKLGNQYSRKAKESKV 149
++ +IM + + ++ V S+ A L E +
Sbjct: 105 -----------SQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQL-----------EEDI 142
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
A+ +I + +T LSGGQ+ R+S+A + + + LD P LD L + +
Sbjct: 143 SKFAEKDNIVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Query: 210 --LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
+ + MA++ +++ + + L AD + +L EG + GT L DF
Sbjct: 201 SCVCKLMANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLRPDF 252
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEIN 95
++S+ +LKDI+ +L + G +G+GKT LL ++ G P + + +SG I
Sbjct: 45 NFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 104
Query: 96 ETRLQDHRMLRKESCYIMQDNLLQELLTVE------ESLTVAAHLKLGNQYSRKAKESKV 149
++ +IM + + ++ V S+ A L E +
Sbjct: 105 -----------SQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQL-----------EEDI 142
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
A+ +I + +T LSGGQ+ R+S+A + + + LD P LD L + +
Sbjct: 143 SKFAEKDNIVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Query: 210 --LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
+ + MA++ +++ + + L AD + +L EG + GT L DF
Sbjct: 201 SCVCKLMANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLRPDF 252
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 63 GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122
GP+G GKT LL ++ Y +P K E + I + ++ + ++ ++ ++ +
Sbjct: 42 GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK--------VKGKIFFLPEEIIVPRKI 93
Query: 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALE 182
+VE+ L A L Y K ++++ +S+ + K L LS G +R+ +A
Sbjct: 94 SVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLKKKLG-ELSQGTIRRVQLAST 147
Query: 183 LLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMIICTLHQPS 229
LL N I LD+P +D + ++K +L + +G +II + + S
Sbjct: 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNS--GYIEINETRLQDHRMLRKESCYIMQDNLL 118
+LG +G GKT +L ILAG P + NS G E+ + R + Y N
Sbjct: 30 VLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEV-------LKRFRGKEIY----NYF 78
Query: 119 QELLTVE-------ESLTVAAHLKLG--NQYSRKAKE-SKVDSIADSLSISTCKNTLTKH 168
+EL + E + + A+ G N+ K E K D + + L+++ N
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
LSGG +RL +A LL + D+P++ LD N+ K +R++ +I+
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 29/163 (17%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
E+ ILGP+G GKT IL G + + G + E ++ ++ R Y D
Sbjct: 295 EIIGILGPNGIGKTTFARILVG-----EITADEGSV-TPEKQILSYKPQRIFPNY---DG 345
Query: 117 LLQELL--TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174
+Q+ L +++L+ ++ + + L++ + LSGG+
Sbjct: 346 TVQQYLENASKDALSTSSWF--------------FEEVTKRLNLHRLLESNVNDLSGGEL 391
Query: 175 KRLSIALELLSNPSIIFLDEPTTGLD----YLNATNLVKLLRD 213
++L IA L + LD+P++ LD Y+ A + ++ R+
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE 434
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Query: 27 SYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE 86
S+ + D + K ILK IS + ++ G +G+GKT LL+IL Y
Sbjct: 18 SHXLIQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77
Query: 87 TN-----SGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEE--SLTVAAHLKLGNQ 139
N G + + ++ H + +LL++ E + ++ K
Sbjct: 78 VNLFGKXPGKVGYSAETVRQH-------IGFVSHSLLEKFQEGERVIDVVISGAFKSIGV 130
Query: 140 YSRKAKE--SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
Y E ++ + + S +LS G+K+R+ IA L P ++ LDEP
Sbjct: 131 YQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAA 190
Query: 198 GLDYL 202
GLD++
Sbjct: 191 GLDFI 195
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
LSGG+++R++IA LL +P I+ DE T+ LD K + D+ T+II H+
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA-HRL 214
Query: 229 SASLLNMADYLYVLTEGYCTYQGT 252
S ++ A+ + +L +G +GT
Sbjct: 215 ST--ISSAESIILLNKGKIVEKGT 236
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETRLQDHR 103
+LKDI+ +L + G +G+GKT LL ++ G P + + +SG I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC-------- 74
Query: 104 MLRKESCYIMQDNLLQELLTVE------ESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
+ +IM + + ++ V S+ A L E + A+ +
Sbjct: 75 ---SQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQL-----------EEDISKFAEKDN 120
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMA 215
I + +T LSGGQ+ R+S+A + + + LD P LD L + + + + MA
Sbjct: 121 IVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 178
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
++ +++ + + L AD + +L EG + GT L DF
Sbjct: 179 NKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLQPDF 222
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 29/194 (14%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPK--KTETNSGYIEI----NETRLQDH--RMLRKESCYI 112
++G +G GK+ L ILAG ++P + + + EI + LQ++ +ML + I
Sbjct: 108 LVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167
Query: 113 MQ----DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK- 167
++ DN+ + + + + L++ E + + + I +N L +
Sbjct: 168 IKPQYVDNIPRAIKGPVQKVGELLKLRM---------EKSPEDVKRYIKILQLENVLKRD 218
Query: 168 --HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
LSGG+ +R +I + + + DEP++ LD N +++R + +IC
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Query: 226 HQPSASLLNMADYL 239
H L++ DYL
Sbjct: 279 HD-----LSVLDYL 287
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 29/166 (17%)
Query: 50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKES 109
G F E+ V++G +G+GKT L+ +LAG +P + + I ++ ++ K
Sbjct: 372 EGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD----IPKLNVSMKPQKIAPKFP 427
Query: 110 CYIMQ---DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT 166
+ Q + + L + V L ++D I D
Sbjct: 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPL-------------RIDDIIDQ---------EV 465
Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
+HLSGG+ +R++I L L I +DEP+ LD K++R
Sbjct: 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 36/236 (15%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEIN 95
++S+ +LKDI+ +L + G +G+GKT LL ++ G P + + +SG I
Sbjct: 45 NFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 104
Query: 96 ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK------ESKV 149
+ +IM T++E++ ++Y ++ E +
Sbjct: 105 -----------SQFSWIMPG-------TIKENIIAGVSY---DEYRYRSVIKACQLEEDI 143
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
A+ +I + +T LSGGQ+ R+S+A + + + LD P LD L + +
Sbjct: 144 SKFAEKDNIVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 201
Query: 210 --LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
+ + MA++ +++ + + L AD + +L EG + GT L DF
Sbjct: 202 SCVCKLMANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLQPDF 253
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
+ LSGGQK +L +A P +I LDEPT LD + L K L++ +G +II T
Sbjct: 894 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT-- 949
Query: 227 QPSASLLNMADYLYVLTEGYCTYQG 251
+ N+ + ++ + +G T G
Sbjct: 950 HSAEFTKNLTEEVWAVKDGRXTPSG 974
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
LSGG K +L++A +L N I+ LDEPT LD +N LV L + T+
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG----ITSITISHD 598
Query: 229 SASLLNMADYLYVLTEGYC--TYQGTVPGLVPYLSDFGYQCPS 269
S L N+ +Y+ + EG Y+G ++F +CP+
Sbjct: 599 SVFLDNVCEYI-INYEGLKLRKYKGN-------FTEFVKKCPA 633
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
+ LSGGQK +L +A P +I LDEPT LD + L K L++ +G +II T
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT-- 955
Query: 227 QPSASLLNMADYLYVLTEGYCTYQG 251
+ N+ + ++ + +G T G
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRXTPSG 980
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
LSGG K +L++A +L N I+ LDEPT LD +N LV L + T+
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG----ITSITISHD 604
Query: 229 SASLLNMADYLYVLTEGYC--TYQGTVPGLVPYLSDFGYQCPS 269
S L N+ +Y+ + EG Y+G ++F +CP+
Sbjct: 605 SVFLDNVCEYI-INYEGLKLRKYKGN-------FTEFVKKCPA 639
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 101/245 (41%), Gaps = 31/245 (12%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
S++ K IL+ +S E+ I+GP+GSGK+ L LAG + E G +E
Sbjct: 10 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR---EDYEVTGGTVEFKGKD 66
Query: 99 L-----QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
L +D R M E+ V + L Y + + D
Sbjct: 67 LLALSPED----RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFD-FQ 121
Query: 154 DSLS-----ISTCKNTLTKHL----SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
D + + ++ LT+ + SGG+KKR I + P + LDE +GLD ++A
Sbjct: 122 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDA 180
Query: 205 TNL----VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYL 260
+ V LRD + II T +Q + DY++VL +G G LV L
Sbjct: 181 LKVVADGVNSLRDGKR--SFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSGDFT-LVKQL 236
Query: 261 SDFGY 265
+ GY
Sbjct: 237 EEQGY 241
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 101/245 (41%), Gaps = 31/245 (12%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
S++ K IL+ +S E+ I+GP+GSGK+ L LAG + E G +E
Sbjct: 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR---EDYEVTGGTVEFKGKD 85
Query: 99 L-----QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
L +D R M E+ V + L Y + + D
Sbjct: 86 LLALSPED----RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFD-FQ 140
Query: 154 DSLS-----ISTCKNTLTKHL----SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
D + + ++ LT+ + SGG+KKR I + P + LDE +GLD ++A
Sbjct: 141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDA 199
Query: 205 TNL----VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYL 260
+ V LRD + II T +Q + DY++VL +G G LV L
Sbjct: 200 LKVVADGVNSLRDGKR--SFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSGDFT-LVKQL 255
Query: 261 SDFGY 265
+ GY
Sbjct: 256 EEQGY 260
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
+ LSGGQK +L +A P +I LDEPT LD + L K L++ +G +II T
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT-- 955
Query: 227 QPSASLLNMADYLYVLTEGYCTYQG 251
+ N+ + ++ + +G T G
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
LSGG K +L++A +L N I+ LDEPT LD +N LV L + T+
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG----ITSITISHD 604
Query: 229 SASLLNMADYLYVLTEGYC--TYQGTVPGLVPYLSDFGYQCPS 269
S L N+ +Y+ + EG Y+G ++F +CP+
Sbjct: 605 SVFLDNVCEYI-INYEGLKLRKYKGN-------FTEFVKKCPA 639
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTE 86
++GP+G+GK+ L+++L G P E
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGE 729
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 169 LSGGQKKRLSIALELL---SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
LSGG+ +R+ +A EL + ++ LDEPT GL + + LV++L + +G +I
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 226 HQPSASLLNMADYLYVLTE------GYCTYQGT 252
H + ++ AD++ L GY GT
Sbjct: 866 H--NLDVIKNADHIIDLGPEGGKEGGYIVATGT 896
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 149 VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPS--IIFLDEPTTGLDYLNATN 206
VD + L++S TL SGG+ +R+ +A ++ S + I LDEPT GL +
Sbjct: 449 VDVGLEYLTLSRSATTL----SGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTER 504
Query: 207 LVKLLRDMAHQGTMIICTLHQPSASLLNMADYL 239
L+K L+ + G +I H ++ AD++
Sbjct: 505 LIKTLKKLRDLGNTVIVVEH--DEEVIRNADHI 535
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 36/228 (15%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETRLQDHR 103
+LKDI+ +L + G +G+GKT LL ++ G P + + +SG I
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC-------- 86
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK------ESKVDSIADSLS 157
+ +IM T++E++ ++Y ++ E + A+ +
Sbjct: 87 ---SQFSWIMPG-------TIKENIIFGVSY---DEYRYRSVIKACQLEEDISKFAEKDN 133
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMA 215
I + +T LSGGQ+ R+S+A + + + LD P LD L + + + + MA
Sbjct: 134 IVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 191
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
++ +++ + + L AD + +L EG + GT L DF
Sbjct: 192 NKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLQPDF 235
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 36/228 (15%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETRLQDHR 103
+LKDI+ +L + G +G+GKT LL ++ G P + + +SG I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC-------- 74
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK------ESKVDSIADSLS 157
+ +IM T++E++ ++Y ++ E + A+ +
Sbjct: 75 ---SQFSWIMPG-------TIKENIIFGVSY---DEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMA 215
I + +T LSGGQ+ R+S+A + + + LD P LD L + + + + MA
Sbjct: 122 IVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 179
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
++ +++ + + L AD + +L EG + GT L DF
Sbjct: 180 NKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLQPDF 223
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 169 LSGGQKKRLSIALEL--LSNPSIIF-LDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
LSGG+ +R+ +A EL SN ++ LDEPTTGL + L+ +L + G ++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 226 HQPSASLLNMADYL 239
H + ++ ADY+
Sbjct: 906 H--NLDVIKTADYI 917
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 169 LSGGQKKRLSIALEL--LSNPSIIF-LDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
LSGG+ +R+ +A EL SN ++ LDEPTTGL + L+ +L + G ++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 226 HQPSASLLNMADYL 239
H + ++ ADY+
Sbjct: 906 H--NLDVIKTADYI 917
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 169 LSGGQKKRLSIALELL---SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
LSGG+ +R+ +A EL + ++ LDEPTTGL + + L+ ++ + +G +I
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 226 H 226
H
Sbjct: 924 H 924
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 169 LSGGQKKRLSIALEL--LSNPSIIF-LDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
LSGG+ +R+ +A EL SN ++ LDEPTTGL + L+ +L + G ++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 226 HQPSASLLNMADYL 239
H + ++ ADY+
Sbjct: 604 H--NLDVIKTADYI 615
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 37/228 (16%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETRLQDHR 103
+LKDI+ +L + G +G+GKT LL ++ G P + + +SG I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC-------- 104
Query: 104 MLRKESCYIMQDNLLQELLTVE------ESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
+ +IM + + ++ V S+ A L E + A+ +
Sbjct: 105 ---SQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQL-----------EEDISKFAEKDN 150
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMA 215
I + +T LS GQ+ ++S+A + + + LD P LD L + + + + MA
Sbjct: 151 IVLGEGGIT--LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
++ +++ + + L AD + +L EG + GT L DF
Sbjct: 209 NKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLQPDF 252
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 168 HLSGGQKKRLSIALELLSNP---SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
LSGG+ +R+ +A EL + ++ LDEPTTGL + L + L + G +I
Sbjct: 730 ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAV 789
Query: 225 LHQ 227
H+
Sbjct: 790 EHK 792
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
V+ E +ILGP+GSGKT LL ++G SG I IN + RK YI
Sbjct: 28 VNGEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEV------RKIRNYIR 75
Query: 114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI-ADSLSISTCKNTLTKHLSGG 172
L E E +TV + L + ++ ++ + A L + L K LS G
Sbjct: 76 YSTNLPE--AYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYK-LSAG 132
Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
Q + +L L S P I+ LDEP +D + + +++ +G ++ L
Sbjct: 133 QSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHEL 185
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL---RDMAHQGTMIICT 224
+LSGGQK+R+S+A + SN I D+P + +D ++ + + + M T I+ T
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 225 LHQPSASLLNMADYLYVLTEGYCTYQGT 252
H S S L D + V++ G + G+
Sbjct: 187 -H--SMSYLPQVDVIIVMSGGKISEMGS 211
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 30/225 (13%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+LK+I+ E+ I G +GSGKT LL ++ G + E + G I+ + R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-----ELEASEGIIK-HSGRVS---- 102
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
+ +IM T++E++ ++Y K+ D + NT
Sbjct: 103 FCSQFSWIMPG-------TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNT 152
Query: 165 LTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMAHQG 218
+ LSGGQ+ R+S+A + + + LD P LD + + + + MA++
Sbjct: 153 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
+++ + + L AD + +L +G + GT L DF
Sbjct: 213 RILVTSKMEH----LRKADKILILHQGSSYFYGTFSELQSLRPDF 253
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 31/225 (13%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+LK+I+ E+ I G +GSGKT LL ++ G + E + G I+ + R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-----ELEASEGIIK-HSGRVS---- 102
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
+ +IM T++E++ ++ ++Y K+ D + NT
Sbjct: 103 FCSQFSWIMPG-------TIKENIIGVSY----DEYRYKSVVKACQLQQDITKFAEQDNT 151
Query: 165 LTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMAHQG 218
+ LSGGQ+ R+S+A + + + LD P LD + + + + MA++
Sbjct: 152 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 211
Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
+++ + + L AD + +L +G + GT L DF
Sbjct: 212 RILVTSKMEH----LRKADKILILHQGSSYFYGTFSELQSLRPDF 252
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 30/225 (13%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+LK+I+ E+ I G +GSGKT LL ++ G + E + G I+ + R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-----ELEASEGIIK-HSGRVS---- 102
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
+ +IM T++E++ ++Y K+ D + NT
Sbjct: 103 FCSQFSWIMPG-------TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNT 152
Query: 165 LTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMAHQG 218
+ LSGGQ+ R+S+A + + + LD P LD + + + + MA++
Sbjct: 153 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
+++ + + L AD + +L +G + GT L DF
Sbjct: 213 RILVTSKMEH----LRKADKILILHQGSSYFYGTFSELQSLRPDF 253
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 38/229 (16%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETRLQDHR 103
+LKDI+ +L + G +G+GKT LL ++ G P + + +SG I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC-------- 104
Query: 104 MLRKESCYIMQDNLLQELL---TVEE----SLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
+ +IM + + ++ + +E S+ A L E + A+
Sbjct: 105 ---SQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL-----------EEDISKFAEKD 150
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDM 214
+I + +T LS GQ+ ++S+A + + + LD P LD L + + + + M
Sbjct: 151 NIVLGEGGIT--LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 208
Query: 215 AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
A++ +++ + + L AD + +L EG + GT L DF
Sbjct: 209 ANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLQPDF 253
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 30/225 (13%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+LK+I+ E+ I G +GSGKT LL ++ G + E + G I+ + R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-----ELEASEGIIK-HSGRVS---- 102
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
+ +IM T++E++ ++Y K+ D + NT
Sbjct: 103 FCSQFSWIMPG-------TIKENIISGVSY---DEYRYKSVVKACQLQQDITKFAEQDNT 152
Query: 165 LTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMAHQG 218
+ LSGGQ+ R+S+A + + + LD P LD + + + + MA++
Sbjct: 153 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
+++ + + L AD + +L +G + GT L DF
Sbjct: 213 RILVTSKMEH----LRKADKILILHQGSSYFYGTFSELQSLRPDF 253
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 30/225 (13%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+LK+I+ E+ I G +GSGKT LL ++ G + E + G I+ + R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-----ELEASEGIIK-HSGRVS---- 102
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
+ +IM T++E++ ++Y K+ D + NT
Sbjct: 103 FCSQFSWIMPG-------TIKENIIRGVSY---DEYRYKSVVKACQLQQDITKFAEQDNT 152
Query: 165 LTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMAHQG 218
+ LSGGQ+ R+S+A + + + LD P LD + + + + MA++
Sbjct: 153 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
+++ + + L AD + +L +G + GT L DF
Sbjct: 213 RILVTSKMEH----LRKADKILILHQGSSYFYGTFSELQSLRPDF 253
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 168 HLSGGQKK------RLSIALELLSNP-SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220
+LSGG++ RL+IA L+ N I LDEPT LD L ++ R + M
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 221 IICTLHQPSASLLNMADYL 239
II T H+ L ++AD +
Sbjct: 340 IIITHHR---ELEDVADVI 355
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
LS G K+ + +A +LS I+ LDEP+ LD + + + L+ T+I+C
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILC 210
>pdb|3F6K|A Chain A, Crystal Structure Of The Vps10p Domain Of Human
SortilinNTS3 IN Complex With Neurotensin
Length = 685
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA 77
H L+ S LY + Y KDI I+ F+ E + +GP SGK L ++
Sbjct: 54 HVPLVIMTFGQSKLYR-SEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVS 112
Query: 78 GYRRPKK 84
G R +
Sbjct: 113 GGSRGGR 119
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 169 LSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
LSGG++ RL+++L L S++ LDEPT LD L+ ++ + +I
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 328
Query: 223 CTLHQPSASLLNMADYL 239
H L + AD++
Sbjct: 329 LVSHDE--ELKDAADHV 343
>pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
pdb|2XR1|B Chain B, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
Length = 640
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 225 LHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEA 284
L+ P LN D + ++T + +QG LVP L +GY+ P P + V L+
Sbjct: 227 LYVPEVFPLNQIDAV-IVTHAHLDHQG----LVPLLFKYGYEGPVYCTPPTRDLMVLLQL 281
Query: 285 DRMFEPCTNGKFFNANSSHNTKTVLKTI 312
D + GK S KT+ TI
Sbjct: 282 DYIDVAAKEGKKIPYESGMVAKTLKHTI 309
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 169 LSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
LSGG++ RL+++L L S++ LDEPT LD L+ ++ + +I
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 223 CTLHQPSASLLNMADYL 239
H L + AD++
Sbjct: 309 LVSHDE--ELKDAADHV 323
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 169 LSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
LSGG++ RL+++L L S++ LDEPT LD L+ ++ + +I
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 148
Query: 223 CTLHQPSASLLNMADYL 239
H L + AD++
Sbjct: 149 LVSH--DEELKDAADHV 163
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 169 LSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
LSGG++ RL+++L L S++ LDEPT LD L+ ++ + +I
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 143
Query: 223 CTLHQPSASLLNMADYL 239
H L + AD++
Sbjct: 144 LVSH--DEELKDAADHV 158
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 169 LSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
LSGG++ RL+++L L S++ LDEPT LD L+ ++ + +I
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 223 CTLHQPSASLLNMADYL 239
H L + AD++
Sbjct: 118 LVSH--DEELKDAADHV 132
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 84 KTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRK 143
K E + + + + D +++ K+ ++ DN LQ++L E +V A L L Y
Sbjct: 268 KAEGKAAGQKAEQQAIADGKLIIKD---VIADNFLQQILLRPEDYSVVATLNLNGDYVSD 324
Query: 144 AKESKVDSIA 153
A ++V I
Sbjct: 325 ALAAEVGGIG 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,508,013
Number of Sequences: 62578
Number of extensions: 647170
Number of successful extensions: 1643
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1421
Number of HSP's gapped (non-prelim): 159
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)