Query psy12625
Match_columns 612
No_of_seqs 477 out of 2715
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 15:23:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061|consensus 100.0 4E-110 8E-115 938.9 58.0 582 15-612 20-613 (613)
2 PLN03211 ABC transporter G-25; 100.0 1E-106 2E-111 919.3 61.9 582 15-606 34-657 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 3E-106 6E-111 915.7 59.5 585 17-611 14-617 (617)
4 PLN03140 ABC transporter G fam 100.0 6E-101 1E-105 929.7 64.3 584 17-611 864-1470(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 5E-101 1E-105 933.6 61.6 575 19-610 758-1393(1394)
6 TIGR00956 3a01205 Pleiotropic 100.0 8E-101 2E-105 931.5 62.0 589 15-607 24-694 (1394)
7 PLN03140 ABC transporter G fam 100.0 5.6E-98 1E-102 903.6 57.1 585 15-607 126-789 (1470)
8 KOG0065|consensus 100.0 1.5E-96 3E-101 840.9 40.8 558 39-607 800-1383(1391)
9 KOG0065|consensus 100.0 7.4E-89 1.6E-93 777.8 40.1 558 43-607 128-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 5E-58 1.1E-62 436.1 23.5 234 20-279 2-238 (240)
11 COG1135 AbcC ABC-type metal io 100.0 9.8E-53 2.1E-57 419.0 22.0 224 20-257 1-230 (339)
12 COG1125 OpuBA ABC-type proline 100.0 1.3E-52 2.8E-57 406.5 20.9 220 20-258 1-225 (309)
13 COG1120 FepC ABC-type cobalami 100.0 7E-52 1.5E-56 412.9 20.9 223 20-258 2-228 (258)
14 COG1127 Ttg2A ABC-type transpo 100.0 1.5E-51 3.2E-56 397.6 21.5 223 18-258 6-235 (263)
15 COG1136 SalX ABC-type antimicr 100.0 5.9E-51 1.3E-55 398.7 24.6 211 21-247 2-220 (226)
16 COG3839 MalK ABC-type sugar tr 100.0 2.2E-51 4.8E-56 424.2 22.3 220 20-258 3-223 (338)
17 COG3842 PotA ABC-type spermidi 100.0 1.5E-51 3.2E-56 427.6 20.3 235 19-279 4-239 (352)
18 COG1131 CcmA ABC-type multidru 100.0 9.1E-51 2E-55 420.3 24.9 223 20-261 4-229 (293)
19 COG3638 ABC-type phosphate/pho 100.0 6.5E-51 1.4E-55 392.2 19.9 226 19-259 2-238 (258)
20 COG1116 TauB ABC-type nitrate/ 100.0 1.4E-50 3.1E-55 396.3 21.6 204 20-245 3-207 (248)
21 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.8E-50 1.2E-54 397.1 23.3 220 19-258 3-227 (254)
22 COG1118 CysA ABC-type sulfate/ 100.0 2.7E-50 5.8E-55 400.5 18.4 223 19-258 1-227 (345)
23 COG2884 FtsE Predicted ATPase 100.0 8.8E-50 1.9E-54 371.5 19.3 216 20-253 1-221 (223)
24 COG1117 PstB ABC-type phosphat 100.0 1.5E-49 3.1E-54 376.5 20.2 237 18-278 5-249 (253)
25 COG4555 NatA ABC-type Na+ tran 100.0 5.7E-50 1.2E-54 375.7 16.3 221 20-258 1-222 (245)
26 PRK13537 nodulation ABC transp 100.0 3.4E-48 7.4E-53 404.4 26.2 221 19-258 6-227 (306)
27 TIGR03265 PhnT2 putative 2-ami 100.0 3.4E-48 7.3E-53 410.9 25.8 219 20-257 4-223 (353)
28 PRK11650 ugpC glycerol-3-phosp 100.0 3.7E-48 8E-53 411.1 25.8 220 20-257 3-223 (356)
29 PRK11432 fbpC ferric transport 100.0 4.4E-48 9.5E-53 409.4 26.2 220 19-257 5-225 (351)
30 TIGR02314 ABC_MetN D-methionin 100.0 4.6E-48 1E-52 407.4 26.2 223 20-257 1-229 (343)
31 COG1124 DppF ABC-type dipeptid 100.0 3E-48 6.4E-53 376.5 21.4 223 19-258 2-231 (252)
32 TIGR03258 PhnT 2-aminoethylpho 100.0 6.3E-48 1.4E-52 409.5 25.7 219 20-257 5-227 (362)
33 cd03261 ABC_Org_Solvent_Resist 100.0 1.1E-47 2.3E-52 386.5 24.8 218 21-256 1-224 (235)
34 PRK09452 potA putrescine/sperm 100.0 1.3E-47 2.7E-52 408.7 25.8 220 19-257 13-233 (375)
35 PRK10851 sulfate/thiosulfate t 100.0 1.7E-47 3.7E-52 405.6 25.8 223 19-257 1-225 (353)
36 PRK13536 nodulation factor exp 100.0 3.7E-47 8.1E-52 401.0 27.1 222 18-258 39-261 (340)
37 COG3840 ThiQ ABC-type thiamine 100.0 4.2E-48 9E-53 357.5 17.2 216 21-257 2-218 (231)
38 cd03259 ABC_Carb_Solutes_like 100.0 3.5E-47 7.6E-52 377.0 24.1 212 21-251 1-213 (213)
39 COG1122 CbiO ABC-type cobalt t 100.0 2.9E-47 6.3E-52 379.3 22.2 221 20-258 3-228 (235)
40 cd03265 ABC_DrrA DrrA is the A 100.0 7.1E-47 1.5E-51 376.8 25.0 216 21-255 1-218 (220)
41 PRK11607 potG putrescine trans 100.0 6.7E-47 1.5E-51 403.7 26.5 221 18-257 17-238 (377)
42 PRK11000 maltose/maltodextrin 100.0 6.6E-47 1.4E-51 403.9 25.9 219 20-257 3-222 (369)
43 TIGR01288 nodI ATP-binding ABC 100.0 9.7E-47 2.1E-51 393.5 26.5 221 19-258 3-224 (303)
44 cd03296 ABC_CysA_sulfate_impor 100.0 7.9E-47 1.7E-51 381.2 24.8 221 20-256 2-224 (239)
45 COG1137 YhbG ABC-type (unclass 100.0 2.2E-48 4.8E-53 364.6 11.9 223 19-258 3-228 (243)
46 TIGR00960 3a0501s02 Type II (G 100.0 9E-47 2E-51 374.9 24.2 210 21-247 2-216 (216)
47 cd03301 ABC_MalK_N The N-termi 100.0 1.7E-46 3.6E-51 372.1 24.2 212 21-251 1-213 (213)
48 PRK11153 metN DL-methionine tr 100.0 2.4E-46 5.3E-51 396.2 26.0 223 20-257 1-229 (343)
49 cd03219 ABC_Mj1267_LivG_branch 100.0 2.3E-46 5E-51 376.9 24.5 220 21-256 1-230 (236)
50 TIGR03522 GldA_ABC_ATP gliding 100.0 3.4E-46 7.4E-51 388.9 25.9 219 20-258 2-221 (301)
51 cd03266 ABC_NatA_sodium_export 100.0 3.3E-46 7.1E-51 371.3 24.5 216 21-251 2-218 (218)
52 cd03218 ABC_YhbG The ABC trans 100.0 3.1E-46 6.8E-51 375.0 24.5 217 21-256 1-220 (232)
53 TIGR01188 drrA daunorubicin re 100.0 1.9E-46 4.1E-51 391.1 23.7 209 41-258 4-213 (302)
54 cd03263 ABC_subfamily_A The AB 100.0 3.5E-46 7.6E-51 371.6 23.9 218 21-256 1-219 (220)
55 cd03269 ABC_putative_ATPase Th 100.0 3.9E-46 8.5E-51 368.7 23.9 210 21-251 1-210 (210)
56 COG0411 LivG ABC-type branched 100.0 7.6E-47 1.7E-51 367.0 18.4 224 19-258 3-239 (250)
57 cd03258 ABC_MetN_methionine_tr 100.0 4E-46 8.6E-51 374.6 24.1 221 21-256 2-228 (233)
58 cd03260 ABC_PstB_phosphate_tra 100.0 4.3E-46 9.3E-51 372.8 24.3 220 21-255 1-226 (227)
59 cd03293 ABC_NrtD_SsuB_transpor 100.0 6E-46 1.3E-50 370.1 25.1 216 21-254 1-219 (220)
60 PRK13643 cbiO cobalt transport 100.0 6.7E-46 1.5E-50 384.3 26.1 243 20-277 1-255 (288)
61 cd03256 ABC_PhnC_transporter A 100.0 3.9E-46 8.4E-51 376.4 23.6 220 21-256 1-232 (241)
62 PRK13637 cbiO cobalt transport 100.0 1.1E-45 2.3E-50 382.6 26.9 224 20-257 2-233 (287)
63 cd03268 ABC_BcrA_bacitracin_re 100.0 4E-46 8.6E-51 368.1 22.3 208 21-251 1-208 (208)
64 PRK09536 btuD corrinoid ABC tr 100.0 5.1E-46 1.1E-50 398.7 24.8 222 20-257 3-227 (402)
65 PRK09493 glnQ glutamine ABC tr 100.0 1E-45 2.3E-50 373.2 25.1 218 21-256 2-223 (240)
66 TIGR01186 proV glycine betaine 100.0 5.6E-46 1.2E-50 393.7 24.1 208 41-257 4-218 (363)
67 PRK13647 cbiO cobalt transport 100.0 1.9E-45 4E-50 378.4 26.9 219 20-256 4-225 (274)
68 PRK11264 putative amino-acid A 100.0 1.3E-45 2.9E-50 374.7 25.3 219 20-256 3-231 (250)
69 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 7.8E-46 1.7E-50 368.6 23.0 211 21-247 1-218 (218)
70 PRK11831 putative ABC transpor 100.0 1.4E-45 3.1E-50 378.4 25.3 220 19-256 6-231 (269)
71 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.2E-45 2.5E-50 373.3 24.3 217 21-256 1-223 (242)
72 PRK13634 cbiO cobalt transport 100.0 2E-45 4.4E-50 381.1 26.4 235 20-269 2-249 (290)
73 TIGR02315 ABC_phnC phosphonate 100.0 6.9E-46 1.5E-50 375.1 22.3 220 21-256 2-233 (243)
74 PRK13651 cobalt transporter AT 100.0 1.8E-45 3.9E-50 383.3 25.8 224 20-257 2-253 (305)
75 cd03224 ABC_TM1139_LivF_branch 100.0 1E-45 2.2E-50 368.7 22.7 215 21-256 1-219 (222)
76 COG0410 LivF ABC-type branched 100.0 7.6E-46 1.6E-50 357.4 20.6 219 20-258 3-226 (237)
77 TIGR00972 3a0107s01c2 phosphat 100.0 3.1E-45 6.7E-50 371.4 25.6 222 20-256 1-230 (247)
78 TIGR02673 FtsE cell division A 100.0 2.3E-45 5E-50 364.2 24.1 208 21-246 2-214 (214)
79 PRK13650 cbiO cobalt transport 100.0 3.3E-45 7.2E-50 377.5 25.9 221 20-257 4-228 (279)
80 PRK13631 cbiO cobalt transport 100.0 4.5E-45 9.8E-50 382.6 26.9 236 19-269 20-279 (320)
81 cd03292 ABC_FtsE_transporter F 100.0 3E-45 6.5E-50 363.3 24.2 209 21-247 1-214 (214)
82 cd03264 ABC_drug_resistance_li 100.0 2.5E-45 5.5E-50 363.2 23.5 210 21-251 1-211 (211)
83 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.3E-45 2.8E-50 378.7 22.2 207 41-256 35-248 (269)
84 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5E-45 1.1E-49 367.3 25.8 217 21-257 2-220 (236)
85 PRK15079 oligopeptide ABC tran 100.0 4.3E-45 9.3E-50 384.2 26.2 233 18-257 6-250 (331)
86 PRK10895 lipopolysaccharide AB 100.0 3.1E-45 6.6E-50 370.0 24.2 219 20-256 3-224 (241)
87 PRK11124 artP arginine transpo 100.0 4.7E-45 1E-49 368.9 25.4 219 19-256 1-228 (242)
88 cd03226 ABC_cobalt_CbiO_domain 100.0 1.7E-45 3.6E-50 362.9 21.3 202 23-248 2-205 (205)
89 PRK10619 histidine/lysine/argi 100.0 6.1E-45 1.3E-49 371.4 26.1 219 20-256 5-239 (257)
90 PRK13641 cbiO cobalt transport 100.0 5.3E-45 1.2E-49 377.5 25.8 223 20-257 2-233 (287)
91 PRK11629 lolD lipoprotein tran 100.0 7.2E-45 1.6E-49 365.5 25.9 218 20-253 5-229 (233)
92 cd03262 ABC_HisP_GlnQ_permease 100.0 4.8E-45 1E-49 361.6 23.7 209 21-247 1-213 (213)
93 PRK13638 cbiO cobalt transport 100.0 8.7E-45 1.9E-49 373.1 26.1 219 20-257 1-224 (271)
94 PRK13636 cbiO cobalt transport 100.0 1E-44 2.2E-49 374.7 26.7 221 20-258 5-231 (283)
95 PRK13646 cbiO cobalt transport 100.0 6.3E-45 1.4E-49 376.8 25.2 223 20-257 2-234 (286)
96 PRK14273 phosphate ABC transpo 100.0 1E-44 2.2E-49 369.1 26.3 224 19-257 6-237 (254)
97 PRK14268 phosphate ABC transpo 100.0 1.2E-44 2.7E-49 369.3 26.5 223 18-256 10-240 (258)
98 PRK11614 livF leucine/isoleuci 100.0 5.6E-45 1.2E-49 367.2 23.6 217 20-257 5-225 (237)
99 PRK10908 cell division protein 100.0 1.1E-44 2.3E-49 361.6 25.1 211 21-249 2-217 (222)
100 cd03234 ABCG_White The White s 100.0 1.5E-44 3.2E-49 361.6 26.0 223 20-251 3-226 (226)
101 TIGR03005 ectoine_ehuA ectoine 100.0 8.9E-45 1.9E-49 369.1 24.7 218 21-256 1-234 (252)
102 PRK11248 tauB taurine transpor 100.0 1.3E-44 2.9E-49 368.2 26.0 213 20-254 1-216 (255)
103 cd03225 ABC_cobalt_CbiO_domain 100.0 6E-45 1.3E-49 360.5 22.8 208 22-246 1-211 (211)
104 PRK13548 hmuV hemin importer A 100.0 1E-44 2.2E-49 369.9 24.9 219 20-257 2-229 (258)
105 PRK14247 phosphate ABC transpo 100.0 1.5E-44 3.4E-49 366.9 26.1 225 20-257 3-233 (250)
106 PRK11308 dppF dipeptide transp 100.0 1.5E-44 3.2E-49 379.8 26.8 231 19-257 4-243 (327)
107 PRK10070 glycine betaine trans 100.0 8.1E-45 1.7E-49 389.2 25.2 229 20-257 4-253 (400)
108 PRK13644 cbiO cobalt transport 100.0 1.4E-44 3.1E-49 371.8 26.0 218 21-257 2-223 (274)
109 PRK14267 phosphate ABC transpo 100.0 1.6E-44 3.6E-49 367.3 26.1 224 20-256 4-235 (253)
110 PRK13635 cbiO cobalt transport 100.0 1.5E-44 3.3E-49 372.5 26.1 220 20-257 5-228 (279)
111 cd03257 ABC_NikE_OppD_transpor 100.0 1.2E-44 2.5E-49 362.5 24.5 217 21-251 2-228 (228)
112 PRK13649 cbiO cobalt transport 100.0 2E-44 4.3E-49 372.2 26.8 223 20-257 2-233 (280)
113 PRK11300 livG leucine/isoleuci 100.0 1.2E-44 2.6E-49 368.8 24.8 221 20-256 5-241 (255)
114 COG4152 ABC-type uncharacteriz 100.0 2E-45 4.4E-50 354.3 17.7 220 20-260 2-221 (300)
115 TIGR03411 urea_trans_UrtD urea 100.0 1.4E-44 3.1E-49 365.3 24.6 220 20-256 2-229 (242)
116 PRK11231 fecE iron-dicitrate t 100.0 9.9E-45 2.1E-49 369.4 23.6 220 20-256 2-225 (255)
117 TIGR02211 LolD_lipo_ex lipopro 100.0 1.4E-44 3.1E-49 360.3 24.1 212 21-248 2-220 (221)
118 PRK11247 ssuB aliphatic sulfon 100.0 1.7E-44 3.8E-49 367.4 25.0 208 19-254 11-219 (257)
119 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.3E-44 2.8E-49 358.1 23.1 210 21-251 1-211 (211)
120 PRK13639 cbiO cobalt transport 100.0 3.4E-44 7.4E-49 369.3 26.7 219 21-257 2-225 (275)
121 cd03235 ABC_Metallic_Cations A 100.0 8.8E-45 1.9E-49 359.9 21.3 209 23-251 2-213 (213)
122 COG0444 DppD ABC-type dipeptid 100.0 1.6E-44 3.5E-49 365.2 23.5 228 21-257 2-242 (316)
123 PRK11022 dppD dipeptide transp 100.0 3.2E-44 6.8E-49 377.3 26.4 228 20-257 3-242 (326)
124 PRK13632 cbiO cobalt transport 100.0 2.5E-44 5.4E-49 369.6 24.9 222 18-257 5-230 (271)
125 PRK10575 iron-hydroxamate tran 100.0 1.9E-44 4.1E-49 369.4 23.8 221 20-256 11-235 (265)
126 PRK13652 cbiO cobalt transport 100.0 3.7E-44 8E-49 369.5 26.0 220 20-257 3-226 (277)
127 TIGR02769 nickel_nikE nickel i 100.0 2.7E-44 5.9E-49 368.2 24.7 229 20-257 2-239 (265)
128 PRK13648 cbiO cobalt transport 100.0 6.4E-44 1.4E-48 366.2 27.0 231 20-268 7-244 (269)
129 TIGR01978 sufC FeS assembly AT 100.0 4.2E-44 9.1E-49 362.0 25.0 220 21-256 1-232 (243)
130 PRK10744 pstB phosphate transp 100.0 5.5E-44 1.2E-48 365.0 26.0 227 15-256 8-242 (260)
131 PRK09984 phosphonate/organopho 100.0 3.6E-44 7.7E-49 366.8 24.6 224 20-256 4-240 (262)
132 PRK14241 phosphate transporter 100.0 6.2E-44 1.3E-48 364.2 26.2 223 20-256 4-240 (258)
133 PRK10253 iron-enterobactin tra 100.0 2.7E-44 5.8E-49 368.3 23.6 223 19-257 6-232 (265)
134 PRK09473 oppD oligopeptide tra 100.0 6E-44 1.3E-48 375.6 26.5 228 19-257 11-250 (330)
135 TIGR03873 F420-0_ABC_ATP propo 100.0 3.5E-44 7.5E-49 365.6 24.0 220 21-256 2-224 (256)
136 PRK14242 phosphate transporter 100.0 6.6E-44 1.4E-48 362.9 26.0 223 19-256 5-235 (253)
137 TIGR03410 urea_trans_UrtE urea 100.0 2.3E-44 5E-49 361.0 22.3 214 21-256 1-219 (230)
138 PRK14235 phosphate transporter 100.0 7.1E-44 1.5E-48 365.5 26.2 225 18-256 17-249 (267)
139 TIGR03415 ABC_choXWV_ATP choli 100.0 2.9E-44 6.4E-49 382.3 24.2 228 21-257 1-253 (382)
140 cd03300 ABC_PotA_N PotA is an 100.0 4.9E-44 1.1E-48 359.3 24.5 217 21-256 1-218 (232)
141 PRK13640 cbiO cobalt transport 100.0 6.4E-44 1.4E-48 368.5 26.0 224 20-258 5-232 (282)
142 PRK10771 thiQ thiamine transpo 100.0 3.5E-44 7.6E-49 360.3 23.4 216 21-257 2-218 (232)
143 COG4175 ProV ABC-type proline/ 100.0 5.8E-45 1.3E-49 362.6 17.3 231 19-258 3-254 (386)
144 TIGR01277 thiQ thiamine ABC tr 100.0 5.8E-44 1.2E-48 354.1 24.4 211 21-252 1-212 (213)
145 TIGR03740 galliderm_ABC gallid 100.0 3.5E-44 7.6E-49 358.1 23.1 210 21-255 1-210 (223)
146 PRK13633 cobalt transporter AT 100.0 5.4E-44 1.2E-48 368.8 25.1 225 20-258 4-233 (280)
147 TIGR00968 3a0106s01 sulfate AB 100.0 5E-44 1.1E-48 360.3 24.2 218 21-257 1-219 (237)
148 PRK14250 phosphate ABC transpo 100.0 3.5E-44 7.6E-49 362.3 23.0 213 20-256 3-219 (241)
149 PRK10584 putative ABC transpor 100.0 8.5E-44 1.8E-48 356.5 25.6 215 20-250 6-227 (228)
150 PRK15093 antimicrobial peptide 100.0 8.4E-44 1.8E-48 375.1 26.5 230 20-257 3-247 (330)
151 PRK11144 modC molybdate transp 100.0 5E-44 1.1E-48 379.9 24.3 209 21-257 2-217 (352)
152 PRK14245 phosphate ABC transpo 100.0 1.2E-43 2.5E-48 360.5 25.8 221 19-257 2-233 (250)
153 PRK13645 cbiO cobalt transport 100.0 8.1E-44 1.8E-48 369.2 25.1 223 20-257 6-239 (289)
154 PRK14237 phosphate transporter 100.0 1.5E-43 3.2E-48 363.1 26.7 228 14-256 14-249 (267)
155 COG4181 Predicted ABC-type tra 100.0 1.5E-44 3.2E-49 330.7 17.0 214 20-249 6-226 (228)
156 PRK15112 antimicrobial peptide 100.0 8.9E-44 1.9E-48 364.7 24.5 228 20-256 4-237 (267)
157 PRK14256 phosphate ABC transpo 100.0 1.6E-43 3.5E-48 359.9 26.2 223 20-256 4-234 (252)
158 cd03299 ABC_ModC_like Archeal 100.0 1.1E-43 2.4E-48 357.4 24.5 216 21-256 1-217 (235)
159 COG4559 ABC-type hemin transpo 100.0 2.8E-44 6.1E-49 339.9 18.8 222 20-258 1-230 (259)
160 PRK14274 phosphate ABC transpo 100.0 1.9E-43 4.1E-48 360.8 26.1 222 20-256 12-241 (259)
161 TIGR02142 modC_ABC molybdenum 100.0 8.8E-44 1.9E-48 378.5 24.4 210 25-257 4-220 (354)
162 PRK14270 phosphate ABC transpo 100.0 2E-43 4.2E-48 359.0 25.9 224 19-257 3-234 (251)
163 cd03267 ABC_NatA_like Similar 100.0 9.7E-44 2.1E-48 358.0 23.4 205 38-251 29-236 (236)
164 PRK14259 phosphate ABC transpo 100.0 1.7E-43 3.6E-48 363.1 25.5 224 17-257 10-252 (269)
165 PRK14269 phosphate ABC transpo 100.0 1.4E-43 3.1E-48 359.0 24.7 221 20-256 2-228 (246)
166 PRK13547 hmuV hemin importer A 100.0 8.5E-44 1.9E-48 365.2 23.3 225 21-256 2-242 (272)
167 COG4598 HisP ABC-type histidin 100.0 7.7E-45 1.7E-49 334.8 13.7 220 20-257 6-240 (256)
168 PRK13549 xylose transporter AT 100.0 1.2E-43 2.5E-48 395.5 26.1 224 20-257 5-231 (506)
169 PRK14239 phosphate transporter 100.0 2.7E-43 5.8E-48 358.2 26.0 222 20-256 5-234 (252)
170 PRK14240 phosphate transporter 100.0 3E-43 6.6E-48 357.4 26.3 222 20-256 3-232 (250)
171 PRK14272 phosphate ABC transpo 100.0 3.2E-43 6.9E-48 357.6 26.4 225 19-257 3-235 (252)
172 PRK13642 cbiO cobalt transport 100.0 2.5E-43 5.5E-48 363.2 25.7 221 20-257 4-228 (277)
173 PRK14253 phosphate ABC transpo 100.0 3E-43 6.4E-48 357.3 25.4 222 20-256 3-231 (249)
174 cd03297 ABC_ModC_molybdenum_tr 100.0 2.3E-43 5.1E-48 349.9 23.8 203 25-251 5-214 (214)
175 PRK14262 phosphate ABC transpo 100.0 4.9E-43 1.1E-47 355.9 26.1 223 20-257 3-233 (250)
176 PRK14249 phosphate ABC transpo 100.0 4.7E-43 1E-47 356.3 25.9 222 20-256 4-233 (251)
177 PRK10762 D-ribose transporter 100.0 2.6E-43 5.6E-48 392.3 25.8 222 20-257 4-229 (501)
178 PRK14248 phosphate ABC transpo 100.0 5E-43 1.1E-47 359.5 25.8 223 19-256 20-250 (268)
179 PRK14244 phosphate ABC transpo 100.0 4.1E-43 8.8E-48 356.7 24.9 223 20-256 5-235 (251)
180 PRK14271 phosphate ABC transpo 100.0 5.9E-43 1.3E-47 360.1 26.4 225 18-257 19-250 (276)
181 PRK14236 phosphate transporter 100.0 8E-43 1.7E-47 358.6 27.1 227 15-256 20-254 (272)
182 PRK11701 phnK phosphonate C-P 100.0 4.2E-43 9.2E-48 358.0 24.9 219 20-256 6-239 (258)
183 PRK14258 phosphate ABC transpo 100.0 7.7E-43 1.7E-47 356.7 26.2 224 20-257 7-244 (261)
184 PRK09700 D-allose transporter 100.0 3.3E-43 7.2E-48 392.4 24.9 222 20-257 5-233 (510)
185 PRK14261 phosphate ABC transpo 100.0 8.4E-43 1.8E-47 354.8 25.6 222 20-256 6-235 (253)
186 TIGR03608 L_ocin_972_ABC putat 100.0 5.9E-43 1.3E-47 344.8 23.4 199 24-242 2-206 (206)
187 PRK14260 phosphate ABC transpo 100.0 1.2E-42 2.5E-47 355.0 25.9 222 20-256 7-241 (259)
188 COG4525 TauB ABC-type taurine 100.0 5.5E-43 1.2E-47 326.8 21.0 215 20-254 3-220 (259)
189 cd03252 ABCC_Hemolysin The ABC 100.0 1.4E-43 3.1E-48 356.9 18.5 215 21-257 1-224 (237)
190 PRK14255 phosphate ABC transpo 100.0 1.6E-42 3.4E-47 352.6 26.2 223 19-256 4-234 (252)
191 cd03233 ABC_PDR_domain1 The pl 100.0 8.2E-43 1.8E-47 343.0 23.4 198 20-251 3-202 (202)
192 PRK14265 phosphate ABC transpo 100.0 1.6E-42 3.5E-47 356.7 26.1 227 14-257 14-257 (274)
193 PRK14251 phosphate ABC transpo 100.0 1.5E-42 3.2E-47 352.6 25.1 222 20-256 4-233 (251)
194 PRK10419 nikE nickel transport 100.0 1.4E-42 3.1E-47 356.0 25.2 229 20-257 3-240 (268)
195 PRK15439 autoinducer 2 ABC tra 100.0 7.6E-43 1.7E-47 389.1 25.1 215 20-257 11-228 (510)
196 TIGR02982 heterocyst_DevA ABC 100.0 1.2E-42 2.7E-47 346.3 23.9 212 21-247 2-219 (220)
197 PRK10418 nikD nickel transport 100.0 1.4E-42 3.1E-47 353.3 24.8 220 19-256 3-228 (254)
198 TIGR01184 ntrCD nitrate transp 100.0 8.5E-43 1.8E-47 349.8 22.6 201 46-256 1-202 (230)
199 PRK14238 phosphate transporter 100.0 1.8E-42 3.9E-47 355.8 25.2 224 18-256 22-253 (271)
200 CHL00131 ycf16 sulfate ABC tra 100.0 3.3E-42 7.2E-47 350.2 26.7 221 19-255 6-238 (252)
201 PRK14275 phosphate ABC transpo 100.0 2.4E-42 5.3E-47 357.3 25.5 224 18-256 37-268 (286)
202 TIGR02323 CP_lyasePhnK phospho 100.0 1.8E-42 3.9E-47 352.4 24.0 219 20-256 3-236 (253)
203 COG2274 SunT ABC-type bacterio 100.0 2.6E-43 5.6E-48 398.9 19.6 224 13-258 464-696 (709)
204 cd03251 ABCC_MsbA MsbA is an e 100.0 4.2E-43 9.2E-48 352.7 19.0 215 21-257 1-224 (234)
205 PRK14243 phosphate transporter 100.0 3E-42 6.6E-47 352.8 25.3 222 19-257 9-247 (264)
206 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-42 5.3E-47 384.6 26.5 222 21-256 2-228 (500)
207 PRK14254 phosphate ABC transpo 100.0 4E-42 8.7E-47 355.5 25.9 222 18-256 37-267 (285)
208 PRK14257 phosphate ABC transpo 100.0 4.1E-42 8.9E-47 361.3 26.4 226 18-257 78-312 (329)
209 TIGR02770 nickel_nikD nickel i 100.0 1.6E-42 3.5E-47 347.7 22.2 208 45-257 1-214 (230)
210 PRK14246 phosphate ABC transpo 100.0 3.9E-42 8.6E-47 350.5 24.9 224 20-257 10-240 (257)
211 PRK13538 cytochrome c biogenes 100.0 3.5E-42 7.6E-47 339.1 23.5 200 21-242 2-202 (204)
212 PRK11288 araG L-arabinose tran 100.0 3.1E-42 6.6E-47 383.7 25.7 218 20-253 4-224 (501)
213 PRK10247 putative ABC transpor 100.0 2.7E-42 6E-47 345.0 22.8 212 19-253 6-222 (225)
214 PRK14266 phosphate ABC transpo 100.0 5.3E-42 1.2E-46 348.3 25.2 223 19-256 2-232 (250)
215 PRK10982 galactose/methyl gala 100.0 1.9E-42 4.2E-47 384.5 23.7 217 24-256 2-221 (491)
216 PRK14263 phosphate ABC transpo 100.0 8.4E-42 1.8E-46 348.9 26.3 223 18-257 6-244 (261)
217 COG1123 ATPase components of v 100.0 3E-42 6.5E-47 372.2 24.0 229 20-258 5-244 (539)
218 COG1123 ATPase components of v 100.0 2.6E-42 5.7E-47 372.6 23.3 232 18-257 278-518 (539)
219 cd03231 ABC_CcmA_heme_exporter 100.0 4.2E-42 9E-47 337.8 22.5 197 21-242 1-198 (201)
220 PRK10261 glutathione transport 100.0 4.4E-42 9.6E-47 390.8 26.1 231 19-257 312-552 (623)
221 TIGR01257 rim_protein retinal- 100.0 3.4E-42 7.4E-47 420.1 26.8 227 18-261 1935-2162(2272)
222 PRK15056 manganese/iron transp 100.0 4.9E-42 1.1E-46 352.8 23.9 220 20-256 6-228 (272)
223 PRK13543 cytochrome c biogenes 100.0 6.3E-42 1.4E-46 339.8 23.7 204 18-244 9-212 (214)
224 cd03213 ABCG_EPDR ABCG transpo 100.0 7.6E-42 1.6E-46 334.0 23.9 191 19-251 2-194 (194)
225 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1E-42 2.2E-47 350.9 18.3 217 21-258 1-226 (238)
226 cd03232 ABC_PDR_domain2 The pl 100.0 8.3E-42 1.8E-46 333.2 24.0 189 20-251 3-192 (192)
227 PRK14252 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 348.7 26.1 226 15-256 11-247 (265)
228 cd03254 ABCC_Glucan_exporter_l 100.0 1.5E-42 3.2E-47 347.6 19.0 214 20-256 2-224 (229)
229 COG4604 CeuD ABC-type enteroch 100.0 2.2E-43 4.8E-48 330.1 11.0 222 20-258 1-225 (252)
230 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.5E-42 1.6E-46 341.6 22.8 192 41-251 33-224 (224)
231 cd03245 ABCC_bacteriocin_expor 100.0 3.5E-42 7.7E-47 342.8 20.2 206 20-251 2-220 (220)
232 PRK14264 phosphate ABC transpo 100.0 2.2E-41 4.8E-46 353.2 27.0 226 18-256 43-287 (305)
233 PRK03695 vitamin B12-transport 100.0 6E-42 1.3E-46 347.5 21.8 201 45-256 11-220 (248)
234 PRK09580 sufC cysteine desulfu 100.0 1.9E-41 4.1E-46 343.7 25.3 220 21-256 2-233 (248)
235 PRK15134 microcin C ABC transp 100.0 1.1E-41 2.3E-46 381.7 25.9 228 20-256 5-244 (529)
236 TIGR03269 met_CoM_red_A2 methy 100.0 9.3E-42 2E-46 381.6 24.9 220 21-259 1-259 (520)
237 TIGR01189 ccmA heme ABC export 100.0 1.1E-41 2.4E-46 333.9 22.3 196 21-241 1-197 (198)
238 PRK10261 glutathione transport 100.0 1E-41 2.2E-46 387.9 25.1 223 20-256 12-256 (623)
239 PRK13539 cytochrome c biogenes 100.0 1.5E-41 3.1E-46 335.4 22.8 199 20-244 2-200 (207)
240 KOG0058|consensus 100.0 1.3E-42 2.8E-47 379.9 16.6 218 18-258 463-691 (716)
241 COG4161 ArtP ABC-type arginine 100.0 4.7E-42 1E-46 311.2 17.0 218 20-255 2-227 (242)
242 PRK11174 cysteine/glutathione 100.0 4.3E-42 9.2E-47 390.1 20.9 211 19-257 348-571 (588)
243 cd03253 ABCC_ATM1_transporter 100.0 4.6E-42 1E-46 345.6 18.8 214 21-257 1-223 (236)
244 PRK15134 microcin C ABC transp 100.0 1.1E-41 2.4E-46 381.7 23.5 230 20-257 275-514 (529)
245 TIGR01257 rim_protein retinal- 100.0 1.7E-41 3.7E-46 414.0 26.9 224 19-260 927-1151(2272)
246 KOG0055|consensus 100.0 8.8E-41 1.9E-45 384.1 31.1 220 16-258 346-576 (1228)
247 cd03230 ABC_DR_subfamily_A Thi 100.0 1.6E-41 3.5E-46 325.7 21.0 172 21-247 1-173 (173)
248 cd03289 ABCC_CFTR2 The CFTR su 100.0 1E-41 2.2E-46 349.7 20.8 211 20-258 2-225 (275)
249 PRK13549 xylose transporter AT 100.0 1.8E-41 3.9E-46 378.0 24.2 225 20-256 259-492 (506)
250 cd03244 ABCC_MRP_domain2 Domai 100.0 1.9E-41 4.1E-46 337.8 20.8 206 20-252 2-220 (221)
251 TIGR03269 met_CoM_red_A2 methy 100.0 3E-41 6.4E-46 377.5 24.6 224 19-257 278-516 (520)
252 PRK13540 cytochrome c biogenes 100.0 4E-41 8.7E-46 330.5 22.5 195 21-240 2-197 (200)
253 TIGR02324 CP_lyasePhnL phospho 100.0 4.3E-41 9.4E-46 336.0 23.0 210 21-243 2-223 (224)
254 COG1129 MglA ABC-type sugar tr 100.0 3.4E-41 7.4E-46 361.8 23.6 223 18-256 6-233 (500)
255 PRK09700 D-allose transporter 100.0 2.9E-41 6.3E-46 376.7 23.5 218 19-254 264-494 (510)
256 PRK09544 znuC high-affinity zi 100.0 3.8E-41 8.1E-46 342.0 22.0 201 20-256 4-207 (251)
257 cd03248 ABCC_TAP TAP, the Tran 100.0 1.2E-41 2.6E-46 340.4 18.0 214 18-247 9-226 (226)
258 COG4988 CydD ABC-type transpor 100.0 9.3E-42 2E-46 366.8 18.1 215 16-257 316-542 (559)
259 PRK13546 teichoic acids export 100.0 1.6E-40 3.5E-45 339.4 26.3 220 19-258 3-232 (264)
260 TIGR01166 cbiO cobalt transpor 100.0 5.3E-41 1.2E-45 326.9 21.6 181 41-229 3-188 (190)
261 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.3E-41 2.9E-46 392.2 20.5 210 19-257 450-672 (686)
262 TIGR01842 type_I_sec_PrtD type 100.0 2.1E-41 4.6E-46 380.7 21.5 218 19-257 315-541 (544)
263 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.2E-41 1.1E-45 329.7 21.4 190 21-261 1-196 (200)
264 cd03229 ABC_Class3 This class 100.0 3.6E-41 7.8E-46 324.8 19.8 173 21-246 1-178 (178)
265 PRK10938 putative molybdenum t 100.0 2.3E-41 5.1E-46 375.8 21.2 210 20-256 3-222 (490)
266 KOG0057|consensus 100.0 1.1E-41 2.5E-46 360.8 17.6 216 15-258 346-574 (591)
267 COG1132 MdlB ABC-type multidru 100.0 1.7E-41 3.6E-46 383.4 19.7 217 19-258 327-552 (567)
268 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.3E-41 2.8E-46 394.0 18.9 212 19-258 476-700 (710)
269 TIGR02633 xylG D-xylose ABC tr 100.0 6.5E-41 1.4E-45 373.2 23.7 225 19-255 256-489 (500)
270 PRK11176 lipid transporter ATP 100.0 3.1E-41 6.7E-46 382.6 21.1 214 19-257 340-566 (582)
271 PRK10790 putative multidrug tr 100.0 4.2E-41 9.1E-46 382.1 21.6 211 19-257 339-562 (592)
272 TIGR03375 type_I_sec_LssB type 100.0 2.7E-41 5.9E-46 390.2 20.3 214 19-258 462-688 (694)
273 PRK11160 cysteine/glutathione 100.0 4.9E-41 1.1E-45 379.7 21.0 214 19-258 337-562 (574)
274 cd03369 ABCC_NFT1 Domain 2 of 100.0 2E-40 4.3E-45 327.3 22.4 200 20-253 6-207 (207)
275 TIGR01193 bacteriocin_ABC ABC- 100.0 3.9E-41 8.5E-46 389.7 19.8 213 19-258 472-697 (708)
276 cd03215 ABC_Carb_Monos_II This 100.0 1.9E-40 4E-45 321.0 21.3 173 20-247 4-182 (182)
277 COG4148 ModC ABC-type molybdat 100.0 1.3E-41 2.8E-46 333.4 12.9 196 48-258 16-218 (352)
278 cd03246 ABCC_Protease_Secretio 100.0 1.2E-40 2.7E-45 319.5 19.5 171 21-247 1-173 (173)
279 COG4619 ABC-type uncharacteriz 100.0 5.9E-42 1.3E-46 312.7 9.4 196 40-247 13-212 (223)
280 cd03214 ABC_Iron-Siderophores_ 100.0 7.9E-41 1.7E-45 323.0 17.9 177 22-251 1-180 (180)
281 cd03288 ABCC_SUR2 The SUR doma 100.0 9.4E-41 2E-45 340.5 19.2 216 19-257 18-242 (257)
282 cd03247 ABCC_cytochrome_bd The 100.0 1.7E-40 3.7E-45 320.0 19.8 177 21-251 1-178 (178)
283 PRK10762 D-ribose transporter 100.0 2.6E-40 5.7E-45 368.2 23.9 206 45-256 267-482 (501)
284 PRK13545 tagH teichoic acids e 100.0 6.1E-40 1.3E-44 355.6 25.4 212 20-258 21-232 (549)
285 TIGR00958 3a01208 Conjugate Tr 100.0 5.5E-41 1.2E-45 387.7 18.4 213 19-258 477-702 (711)
286 COG3845 ABC-type uncharacteriz 100.0 3E-40 6.6E-45 347.5 22.1 218 19-252 3-223 (501)
287 PRK11288 araG L-arabinose tran 100.0 2.4E-40 5.1E-45 368.6 22.3 208 44-257 267-484 (501)
288 COG0396 sufC Cysteine desulfur 100.0 1.1E-39 2.3E-44 313.4 23.4 233 19-267 2-242 (251)
289 TIGR03771 anch_rpt_ABC anchore 100.0 2.9E-40 6.3E-45 329.9 20.4 197 51-257 1-200 (223)
290 COG4987 CydC ABC-type transpor 100.0 3E-41 6.4E-46 357.5 13.9 213 20-258 336-561 (573)
291 COG4172 ABC-type uncharacteriz 100.0 4.7E-40 1E-44 336.1 22.2 235 16-258 272-516 (534)
292 TIGR01187 potA spermidine/putr 100.0 3.3E-40 7.2E-45 347.1 20.8 188 61-257 1-189 (325)
293 PRK10535 macrolide transporter 100.0 5.9E-39 1.3E-43 366.5 32.7 221 20-256 4-230 (648)
294 TIGR01846 type_I_sec_HlyB type 100.0 2.1E-40 4.5E-45 382.7 20.7 218 19-258 454-680 (694)
295 PRK13657 cyclic beta-1,2-gluca 100.0 2.9E-40 6.3E-45 374.9 21.0 212 19-257 333-557 (588)
296 PRK15439 autoinducer 2 ABC tra 100.0 6.6E-40 1.4E-44 365.5 23.2 217 20-257 268-491 (510)
297 TIGR02203 MsbA_lipidA lipid A 100.0 2.7E-40 5.9E-45 374.1 19.7 214 19-257 329-555 (571)
298 TIGR01192 chvA glucan exporter 100.0 6.4E-40 1.4E-44 371.2 21.3 216 19-257 333-557 (585)
299 PRK10789 putative multidrug tr 100.0 4.5E-40 9.7E-45 371.6 19.3 213 19-257 312-537 (569)
300 PRK13541 cytochrome c biogenes 100.0 3.3E-39 7.2E-44 315.6 21.7 191 21-239 2-192 (195)
301 TIGR02204 MsbA_rel ABC transpo 100.0 7.1E-40 1.5E-44 371.1 19.1 214 19-257 336-562 (576)
302 cd03216 ABC_Carb_Monos_I This 100.0 3.5E-39 7.5E-44 306.5 20.5 159 21-249 1-162 (163)
303 cd03228 ABCC_MRP_Like The MRP 100.0 2.4E-39 5.2E-44 310.0 19.4 169 21-246 1-171 (171)
304 cd03250 ABCC_MRP_domain1 Domai 100.0 1.1E-39 2.4E-44 321.2 17.2 193 21-246 1-204 (204)
305 cd03290 ABCC_SUR1_N The SUR do 100.0 5.5E-39 1.2E-43 319.5 20.7 198 22-246 2-218 (218)
306 PRK10982 galactose/methyl gala 100.0 5.3E-39 1.1E-43 357.0 22.5 218 19-254 249-476 (491)
307 COG1119 ModF ABC-type molybden 100.0 2.3E-39 5E-44 314.8 16.5 221 16-252 27-256 (257)
308 PTZ00265 multidrug resistance 100.0 1.7E-39 3.6E-44 396.3 17.8 220 19-257 1164-1451(1466)
309 PRK10938 putative molybdenum t 100.0 9E-39 1.9E-43 355.1 21.4 217 19-251 259-485 (490)
310 PRK15064 ABC transporter ATP-b 100.0 1.1E-38 2.3E-43 357.7 21.9 209 21-257 2-241 (530)
311 PRK11819 putative ABC transpor 100.0 1.8E-38 3.8E-43 357.4 22.8 209 19-256 5-248 (556)
312 COG4608 AppF ABC-type oligopep 100.0 1.9E-38 4E-43 314.8 19.0 193 19-257 3-198 (268)
313 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.7E-38 8E-43 318.9 21.6 189 44-255 8-204 (246)
314 TIGR02857 CydD thiol reductant 100.0 8.4E-39 1.8E-43 358.7 18.3 197 20-242 320-529 (529)
315 cd03291 ABCC_CFTR1 The CFTR su 100.0 6.1E-38 1.3E-42 322.9 23.0 201 15-257 34-246 (282)
316 KOG0055|consensus 100.0 5.6E-39 1.2E-43 369.3 16.9 219 17-258 984-1213(1228)
317 cd03223 ABCD_peroxisomal_ALDP 100.0 3.8E-38 8.3E-43 300.3 19.5 163 21-245 1-163 (166)
318 COG4674 Uncharacterized ABC-ty 100.0 1.1E-38 2.5E-43 298.0 14.7 222 19-257 4-234 (249)
319 PRK15064 ABC transporter ATP-b 100.0 3.3E-38 7.1E-43 353.7 21.4 202 19-256 318-523 (530)
320 COG4586 ABC-type uncharacteriz 100.0 1.3E-38 2.7E-43 311.9 15.7 232 20-260 3-248 (325)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.9E-38 1.1E-42 353.7 22.2 210 19-256 3-246 (552)
322 PRK15177 Vi polysaccharide exp 100.0 3.3E-38 7.2E-43 312.8 18.3 195 44-262 1-196 (213)
323 PLN03232 ABC transporter C fam 100.0 1.6E-38 3.4E-43 390.7 19.6 212 19-257 1233-1457(1495)
324 PRK10522 multidrug transporter 100.0 6.1E-38 1.3E-42 352.8 22.4 202 19-250 321-530 (547)
325 TIGR02868 CydC thiol reductant 100.0 1.8E-38 3.9E-43 356.0 17.8 185 19-228 333-529 (529)
326 COG4172 ABC-type uncharacteriz 100.0 9.4E-38 2E-42 319.3 21.2 230 19-257 5-246 (534)
327 PLN03130 ABC transporter C fam 100.0 2.6E-38 5.5E-43 389.2 20.5 213 19-258 1236-1461(1622)
328 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.7E-37 3.7E-42 349.5 22.6 207 19-250 336-551 (555)
329 COG4618 ArpD ABC-type protease 100.0 7.3E-38 1.6E-42 328.9 16.7 225 14-261 328-563 (580)
330 TIGR00957 MRP_assoc_pro multi 100.0 1E-37 2.2E-42 384.0 20.0 213 19-258 1283-1508(1522)
331 PRK13409 putative ATPase RIL; 100.0 4.6E-37 1E-41 345.7 23.2 201 18-255 338-539 (590)
332 PRK11819 putative ABC transpor 100.0 4.1E-37 8.8E-42 346.4 22.4 203 19-254 323-529 (556)
333 cd03236 ABC_RNaseL_inhibitor_d 100.0 2E-37 4.3E-42 314.9 18.0 192 43-251 14-220 (255)
334 PTZ00243 ABC transporter; Prov 100.0 2.2E-37 4.7E-42 380.5 21.6 212 19-257 1307-1532(1560)
335 PTZ00265 multidrug resistance 100.0 2.5E-37 5.4E-42 377.2 20.5 211 20-245 382-655 (1466)
336 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.8E-37 1.9E-41 343.5 22.7 202 19-253 321-526 (552)
337 KOG0056|consensus 100.0 5.1E-38 1.1E-42 326.3 11.2 232 4-258 518-761 (790)
338 TIGR01271 CFTR_protein cystic 100.0 1.1E-36 2.4E-41 373.8 21.9 212 19-258 1216-1440(1490)
339 PRK10636 putative ABC transpor 100.0 1.8E-36 3.9E-41 345.3 21.3 202 19-257 311-516 (638)
340 COG1101 PhnK ABC-type uncharac 100.0 1.7E-36 3.8E-41 287.6 16.7 221 21-252 2-232 (263)
341 COG4167 SapF ABC-type antimicr 100.0 2.1E-36 4.6E-41 279.7 16.5 230 20-258 4-239 (267)
342 COG4136 ABC-type uncharacteriz 100.0 1.4E-36 3E-41 272.6 14.4 194 20-229 2-196 (213)
343 COG1134 TagH ABC-type polysacc 100.0 1.1E-35 2.4E-40 289.6 21.8 225 19-262 2-240 (249)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 6.1E-36 1.3E-40 278.3 17.9 144 21-246 1-144 (144)
345 PRK11147 ABC transporter ATPas 100.0 7.5E-36 1.6E-40 340.7 22.1 204 18-254 317-524 (635)
346 cd03222 ABC_RNaseL_inhibitor T 100.0 7.2E-36 1.6E-40 286.3 18.5 156 24-257 4-162 (177)
347 KOG0059|consensus 100.0 4.8E-36 1E-40 351.8 20.0 225 19-261 563-790 (885)
348 PRK10636 putative ABC transpor 100.0 1.1E-35 2.4E-40 338.9 21.3 207 20-255 1-233 (638)
349 COG4133 CcmA ABC-type transpor 100.0 6.7E-36 1.5E-40 278.8 15.1 190 20-230 2-192 (209)
350 PLN03073 ABC transporter F fam 100.0 2.8E-35 6E-40 337.1 23.2 205 19-257 507-713 (718)
351 cd03238 ABC_UvrA The excision 100.0 2.6E-35 5.7E-40 282.2 18.6 161 41-250 6-169 (176)
352 TIGR00954 3a01203 Peroxysomal 100.0 2.3E-35 5E-40 337.4 19.5 194 20-244 451-653 (659)
353 PRK11147 ABC transporter ATPas 100.0 5.6E-35 1.2E-39 333.6 22.0 205 20-255 3-240 (635)
354 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.7E-34 3.7E-39 272.5 19.0 154 23-246 2-157 (157)
355 PLN03232 ABC transporter C fam 100.0 1.2E-34 2.7E-39 356.3 20.0 202 20-257 614-827 (1495)
356 PRK13409 putative ATPase RIL; 100.0 9.2E-35 2E-39 327.1 16.5 183 43-245 87-287 (590)
357 COG5265 ATM1 ABC-type transpor 100.0 5.3E-35 1.1E-39 301.1 12.5 217 17-258 259-486 (497)
358 PLN03130 ABC transporter C fam 100.0 2.2E-34 4.8E-39 354.5 20.0 201 20-257 614-827 (1622)
359 COG4107 PhnK ABC-type phosphon 100.0 3E-34 6.5E-39 263.4 14.6 216 20-258 6-241 (258)
360 TIGR00957 MRP_assoc_pro multi 100.0 8.9E-34 1.9E-38 349.3 21.2 205 20-257 636-849 (1522)
361 COG0488 Uup ATPase components 100.0 4.2E-33 9.1E-38 306.6 19.3 207 19-254 2-236 (530)
362 PLN03073 ABC transporter F fam 100.0 1.9E-33 4.1E-38 322.0 14.2 219 17-255 174-428 (718)
363 TIGR01271 CFTR_protein cystic 100.0 8.7E-33 1.9E-37 339.6 19.7 189 43-257 439-635 (1490)
364 cd03270 ABC_UvrA_I The excisio 100.0 3.7E-32 8.1E-37 271.9 20.2 193 41-251 6-226 (226)
365 PTZ00243 ABC transporter; Prov 100.0 1.3E-32 2.9E-37 338.3 19.0 197 41-257 671-869 (1560)
366 COG4778 PhnL ABC-type phosphon 100.0 1E-31 2.2E-36 246.0 14.9 214 19-244 3-227 (235)
367 cd03271 ABC_UvrA_II The excisi 100.0 5.1E-31 1.1E-35 267.2 19.5 201 42-253 7-261 (261)
368 PF00005 ABC_tran: ABC transpo 100.0 1.1E-31 2.5E-36 246.9 13.0 131 46-197 1-137 (137)
369 KOG0054|consensus 100.0 3.5E-31 7.6E-36 311.8 19.4 214 18-258 1136-1362(1381)
370 KOG0054|consensus 100.0 6.1E-31 1.3E-35 309.7 20.0 207 16-258 514-731 (1381)
371 COG4138 BtuD ABC-type cobalami 100.0 1.1E-31 2.3E-36 246.9 8.6 210 20-258 3-221 (248)
372 COG1129 MglA ABC-type sugar tr 100.0 6.4E-30 1.4E-34 275.0 21.7 218 18-255 261-487 (500)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 1.2E-30 2.5E-35 255.5 11.8 169 47-244 14-190 (197)
374 COG0488 Uup ATPase components 100.0 3.7E-29 8.1E-34 275.4 19.0 200 18-254 319-521 (530)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 7E-29 1.5E-33 250.9 12.4 194 40-243 12-234 (243)
376 COG3845 ABC-type uncharacteriz 99.9 9.4E-27 2E-31 245.8 22.0 224 18-256 255-490 (501)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.2E-28 4.7E-33 248.7 8.9 179 56-243 25-242 (251)
378 cd03279 ABC_sbcCD SbcCD and ot 99.9 7.4E-28 1.6E-32 238.7 11.0 181 47-246 18-210 (213)
379 cd03274 ABC_SMC4_euk Eukaryoti 99.9 8.1E-29 1.8E-33 245.1 3.0 179 41-244 15-204 (212)
380 PRK00635 excinuclease ABC subu 99.9 2.2E-26 4.9E-31 277.9 21.1 137 118-257 759-905 (1809)
381 cd03240 ABC_Rad50 The catalyti 99.9 3.7E-27 8.1E-32 232.0 11.8 166 48-244 15-197 (204)
382 COG4615 PvdE ABC-type sideroph 99.9 5.3E-27 1.1E-31 239.8 11.6 203 19-252 321-531 (546)
383 PRK00349 uvrA excinuclease ABC 99.9 1E-25 2.2E-30 262.2 21.2 125 122-257 792-926 (943)
384 COG4178 ABC-type uncharacteriz 99.9 1.5E-25 3.2E-30 245.7 15.9 193 18-244 390-588 (604)
385 TIGR00630 uvra excinuclease AB 99.9 1E-24 2.3E-29 253.5 20.9 124 122-256 790-923 (924)
386 KOG0927|consensus 99.9 3.6E-25 7.9E-30 234.7 12.8 221 17-256 72-307 (614)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.9 8E-25 1.7E-29 214.4 13.1 171 46-246 12-192 (198)
388 COG4170 SapD ABC-type antimicr 99.9 1E-24 2.3E-29 206.2 13.3 230 21-258 4-248 (330)
389 KOG0927|consensus 99.9 6.1E-25 1.3E-29 233.0 10.9 202 17-253 386-591 (614)
390 COG1245 Predicted ATPase, RNas 99.9 6.9E-24 1.5E-28 220.6 16.2 189 19-243 341-530 (591)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.7E-24 5.9E-29 218.1 8.4 177 54-244 21-233 (247)
392 PF01061 ABC2_membrane: ABC-2 99.9 5.2E-24 1.1E-28 208.5 1.5 208 338-548 1-210 (210)
393 KOG0060|consensus 99.9 3.7E-22 8E-27 213.4 15.7 200 18-244 431-641 (659)
394 cd03280 ABC_MutS2 MutS2 homolo 99.9 3.5E-22 7.6E-27 196.2 10.7 146 46-251 17-172 (200)
395 KOG0062|consensus 99.9 4.6E-22 9.9E-27 210.2 11.6 202 18-255 78-282 (582)
396 KOG2355|consensus 99.9 4.3E-21 9.4E-26 181.3 15.2 213 18-258 11-237 (291)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.3E-21 5E-26 191.9 13.1 172 46-246 14-211 (213)
398 KOG0066|consensus 99.8 6.4E-21 1.4E-25 196.8 12.6 177 17-229 583-762 (807)
399 COG1245 Predicted ATPase, RNas 99.8 3.8E-21 8.2E-26 200.3 10.8 179 52-244 96-288 (591)
400 KOG0062|consensus 99.8 8.8E-21 1.9E-25 200.5 13.0 199 18-249 360-559 (582)
401 cd03239 ABC_SMC_head The struc 99.8 1.9E-20 4.2E-25 180.2 13.6 74 169-244 95-172 (178)
402 PRK00635 excinuclease ABC subu 99.8 3.2E-19 6.9E-24 216.4 19.5 126 122-258 1661-1796(1809)
403 cd03283 ABC_MutS-like MutS-lik 99.8 3.8E-20 8.1E-25 181.4 9.0 136 42-229 13-149 (199)
404 cd03241 ABC_RecN RecN ATPase i 99.8 2.3E-19 4.9E-24 185.0 14.7 76 168-246 170-249 (276)
405 COG0178 UvrA Excinuclease ATPa 99.8 2.7E-19 5.9E-24 197.8 15.9 127 121-258 783-919 (935)
406 COG2401 ABC-type ATPase fused 99.8 2.9E-19 6.3E-24 184.3 14.0 206 21-247 358-587 (593)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.8 7.3E-20 1.6E-24 182.3 9.0 153 42-252 16-175 (222)
408 cd03227 ABC_Class2 ABC-type Cl 99.8 5.5E-19 1.2E-23 167.7 11.1 74 169-244 78-155 (162)
409 TIGR00630 uvra excinuclease AB 99.8 1.3E-18 2.8E-23 202.8 14.3 135 120-257 433-582 (924)
410 KOG0064|consensus 99.8 3E-19 6.5E-24 188.7 8.0 187 20-240 481-679 (728)
411 PRK00349 uvrA excinuclease ABC 99.8 1.9E-18 4.2E-23 201.7 13.5 135 120-257 435-584 (943)
412 cd03243 ABC_MutS_homologs The 99.8 1.3E-18 2.8E-23 171.2 8.1 156 48-256 21-177 (202)
413 KOG0066|consensus 99.7 6.5E-19 1.4E-23 182.1 4.9 219 17-252 261-493 (807)
414 cd03242 ABC_RecF RecF is a rec 99.7 8E-17 1.7E-21 165.5 15.5 76 167-247 182-269 (270)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.7 1.4E-17 3E-22 163.7 9.3 137 41-229 14-152 (204)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 3.4E-16 7.4E-21 155.4 8.8 160 42-257 17-180 (216)
417 TIGR02858 spore_III_AA stage I 99.6 8.7E-16 1.9E-20 156.7 11.8 141 57-256 112-267 (270)
418 KOG0063|consensus 99.6 1.8E-15 3.9E-20 156.9 12.2 176 43-242 349-530 (592)
419 smart00534 MUTSac ATPase domai 99.6 2.2E-15 4.9E-20 146.1 5.9 93 154-249 47-141 (185)
420 PRK00064 recF recombination pr 99.5 1.1E-13 2.5E-18 147.8 17.4 76 168-247 273-359 (361)
421 PF02463 SMC_N: RecF/RecN/SMC 99.5 4E-15 8.7E-20 148.1 3.9 89 146-243 120-212 (220)
422 TIGR01247 drrB daunorubicin re 99.5 1.7E-12 3.6E-17 130.7 22.8 226 346-601 1-234 (236)
423 TIGR01069 mutS2 MutS2 family p 99.5 3.8E-14 8.3E-19 163.9 9.5 129 49-229 314-446 (771)
424 cd03281 ABC_MSH5_euk MutS5 hom 99.5 1.6E-13 3.5E-18 136.0 11.8 130 44-229 17-155 (213)
425 KOG0063|consensus 99.5 6.1E-14 1.3E-18 145.7 8.3 189 53-243 97-287 (592)
426 TIGR03062 pip_yhgE_Cterm YhgE/ 99.5 2.1E-12 4.5E-17 127.4 16.8 149 428-606 57-206 (208)
427 TIGR01291 nodJ ABC-2 type tran 99.4 3.7E-11 8.1E-16 122.4 23.7 237 340-606 7-250 (253)
428 PTZ00132 GTP-binding nuclear p 99.4 4.7E-13 1E-17 132.7 9.1 45 172-216 156-205 (215)
429 TIGR00025 Mtu_efflux ABC trans 99.4 3.8E-11 8.3E-16 120.6 22.3 223 352-604 2-229 (232)
430 cd00820 PEPCK_HprK Phosphoenol 99.4 3.1E-13 6.7E-18 117.9 5.8 75 43-131 2-78 (107)
431 cd03287 ABC_MSH3_euk MutS3 hom 99.4 2.4E-12 5.2E-17 128.0 11.6 140 43-236 18-160 (222)
432 TIGR03861 phenyl_ABC_PedC alco 99.4 2.1E-10 4.6E-15 116.7 25.2 236 337-605 1-250 (253)
433 PRK00409 recombination and DNA 99.4 7.2E-13 1.6E-17 153.8 7.8 86 162-250 384-470 (782)
434 PRK14079 recF recombination pr 99.3 2.8E-11 6E-16 128.8 15.8 76 169-252 264-348 (349)
435 PRK07721 fliI flagellum-specif 99.3 1.4E-11 3.1E-16 133.7 13.0 176 42-255 145-340 (438)
436 PHA02562 46 endonuclease subun 99.3 4E-12 8.6E-17 144.1 8.6 79 165-247 465-555 (562)
437 TIGR00634 recN DNA repair prot 99.3 4.2E-12 9.1E-17 143.5 8.6 76 168-246 440-519 (563)
438 TIGR00618 sbcc exonuclease Sbc 99.3 6.1E-12 1.3E-16 151.9 10.1 87 158-245 940-1036(1042)
439 cd01128 rho_factor Transcripti 99.3 4E-12 8.7E-17 128.5 7.1 181 51-247 11-211 (249)
440 PRK10869 recombination and rep 99.3 1.1E-11 2.5E-16 139.0 9.5 75 169-246 431-509 (553)
441 COG0178 UvrA Excinuclease ATPa 99.3 4E-11 8.6E-16 133.9 13.3 136 120-258 427-577 (935)
442 cd01124 KaiC KaiC is a circadi 99.3 7.1E-11 1.5E-15 114.1 13.3 89 155-243 58-163 (187)
443 cd03286 ABC_MSH6_euk MutS6 hom 99.2 1.3E-11 2.8E-16 122.5 7.4 135 42-229 16-154 (218)
444 PRK08533 flagellar accessory p 99.2 5.2E-11 1.1E-15 119.5 11.8 150 52-243 20-184 (230)
445 PF13304 AAA_21: AAA domain; P 99.2 8E-12 1.7E-16 124.7 5.6 63 167-229 235-300 (303)
446 PRK13695 putative NTPase; Prov 99.2 2.4E-11 5.3E-16 116.5 7.9 81 164-250 74-156 (174)
447 PRK15066 inner membrane transp 99.2 6.4E-09 1.4E-13 106.2 25.9 240 337-608 7-254 (257)
448 COG3910 Predicted ATPase [Gene 99.2 3E-10 6.5E-15 107.0 11.6 157 44-229 24-189 (233)
449 PRK03918 chromosome segregatio 99.1 9.1E-11 2E-15 140.0 8.9 79 164-244 784-868 (880)
450 TIGR02788 VirB11 P-type DNA tr 99.1 2E-10 4.2E-15 120.4 10.2 143 49-257 137-280 (308)
451 PRK10246 exonuclease subunit S 99.1 4.8E-11 1E-15 143.6 6.3 82 162-244 943-1032(1047)
452 PRK13830 conjugal transfer pro 99.1 8.7E-10 1.9E-14 129.5 15.6 68 184-252 650-727 (818)
453 cd01120 RecA-like_NTPases RecA 99.1 2.6E-10 5.7E-15 106.7 8.9 63 168-230 67-139 (165)
454 PRK01156 chromosome segregatio 99.1 7.5E-10 1.6E-14 132.3 12.5 94 148-243 765-883 (895)
455 TIGR00606 rad50 rad50. This fa 99.0 4.1E-10 8.9E-15 138.9 9.3 72 164-236 1195-1277(1311)
456 PRK06793 fliI flagellum-specif 99.0 1.6E-09 3.5E-14 116.9 10.3 155 43-253 144-306 (432)
457 TIGR02168 SMC_prok_B chromosom 98.9 1.1E-09 2.3E-14 134.5 7.9 79 162-243 1083-1165(1179)
458 TIGR03238 dnd_assoc_3 dnd syst 98.9 5.1E-10 1.1E-14 120.6 3.8 52 43-101 19-71 (504)
459 COG0842 ABC-type multidrug tra 98.9 1.3E-07 2.9E-12 96.3 21.0 231 351-609 45-285 (286)
460 PRK06067 flagellar accessory p 98.9 2.4E-08 5.3E-13 100.4 15.2 76 168-243 100-186 (234)
461 cd01131 PilT Pilus retraction 98.9 9E-09 1.9E-13 101.0 11.1 57 178-243 66-122 (198)
462 PRK06995 flhF flagellar biosyn 98.8 9.5E-09 2.1E-13 112.5 9.9 151 44-226 244-400 (484)
463 TIGR02169 SMC_prok_A chromosom 98.8 4.6E-09 9.9E-14 129.0 8.0 77 165-244 1071-1151(1164)
464 cd01125 repA Hexameric Replica 98.8 1.4E-08 3.1E-13 102.5 10.2 136 56-229 1-160 (239)
465 PRK02224 chromosome segregatio 98.8 8.9E-09 1.9E-13 123.0 8.8 78 166-245 779-869 (880)
466 smart00382 AAA ATPases associa 98.8 1.6E-07 3.4E-12 84.5 14.9 119 55-227 1-125 (148)
467 TIGR01248 drrC daunorubicin re 98.8 6.5E-08 1.4E-12 90.8 12.6 131 412-544 14-146 (152)
468 TIGR02655 circ_KaiC circadian 98.8 4.4E-10 9.6E-15 124.8 -4.2 168 45-243 9-190 (484)
469 TIGR03881 KaiC_arch_4 KaiC dom 98.6 9.2E-09 2E-13 103.1 2.1 167 45-243 8-188 (229)
470 cd02023 UMPK Uridine monophosp 98.6 3.3E-08 7.2E-13 96.8 5.4 113 58-201 1-113 (198)
471 TIGR01026 fliI_yscN ATPase Fli 98.6 3.1E-07 6.7E-12 100.1 13.2 178 42-256 150-346 (440)
472 TIGR00611 recf recF protein. A 98.6 5.2E-08 1.1E-12 104.4 6.8 58 169-229 276-342 (365)
473 PRK07196 fliI flagellum-specif 98.6 5.7E-08 1.2E-12 105.1 6.5 90 42-134 142-239 (434)
474 PRK13891 conjugal transfer pro 98.6 7.9E-07 1.7E-11 105.2 16.6 70 179-249 680-752 (852)
475 TIGR01420 pilT_fam pilus retra 98.6 3.6E-07 7.7E-12 97.3 11.4 125 53-243 119-243 (343)
476 cd01130 VirB11-like_ATPase Typ 98.5 1.3E-07 2.8E-12 91.8 6.9 84 45-134 14-99 (186)
477 COG0419 SbcC ATPase involved i 98.5 2.3E-07 4.9E-12 111.0 9.1 79 164-244 811-897 (908)
478 PRK06002 fliI flagellum-specif 98.5 2.7E-07 5.8E-12 100.0 7.9 85 18-117 137-230 (450)
479 PRK05399 DNA mismatch repair p 98.4 5.1E-07 1.1E-11 106.6 9.4 138 43-238 595-738 (854)
480 PRK09825 idnK D-gluconate kina 98.4 1.6E-07 3.5E-12 90.3 4.2 67 55-130 2-69 (176)
481 TIGR02680 conserved hypothetic 98.4 4.3E-07 9.3E-12 112.1 7.5 63 163-228 1242-1316(1353)
482 PLN03210 Resistant to P. syrin 98.4 7.8E-07 1.7E-11 109.0 9.3 164 47-265 198-365 (1153)
483 PRK13898 type IV secretion sys 98.4 6.1E-06 1.3E-10 97.5 16.5 49 182-230 638-687 (800)
484 cd01122 GP4d_helicase GP4d_hel 98.3 1.1E-05 2.4E-10 82.9 14.4 37 43-79 17-53 (271)
485 PRK00454 engB GTP-binding prot 98.2 1.7E-05 3.8E-10 76.8 13.5 66 148-217 126-195 (196)
486 PRK13873 conjugal transfer ATP 98.2 1.4E-05 3E-10 94.6 14.3 47 183-229 632-679 (811)
487 PRK06315 type III secretion sy 98.2 3.5E-06 7.7E-11 91.5 8.5 121 43-170 152-293 (442)
488 cd00009 AAA The AAA+ (ATPases 98.2 7E-06 1.5E-10 74.5 9.1 55 174-229 72-131 (151)
489 PF13558 SbcCD_C: Putative exo 98.2 3E-06 6.5E-11 72.2 5.9 51 163-213 27-90 (90)
490 PF13555 AAA_29: P-loop contai 98.2 2.1E-06 4.5E-11 67.4 4.5 37 46-82 12-49 (62)
491 TIGR02903 spore_lon_C ATP-depe 98.1 8.9E-06 1.9E-10 92.9 10.6 114 55-213 174-291 (615)
492 COG1682 TagG ABC-type polysacc 98.1 0.0012 2.6E-08 67.5 24.4 205 336-549 16-225 (263)
493 PRK10078 ribose 1,5-bisphospho 98.1 3.6E-06 7.9E-11 81.6 5.2 52 56-115 2-55 (186)
494 cd01876 YihA_EngB The YihA (En 98.1 1.6E-06 3.4E-11 80.9 2.4 64 147-214 100-169 (170)
495 TIGR00152 dephospho-CoA kinase 98.1 4.5E-06 9.8E-11 81.1 5.0 72 172-245 61-133 (188)
496 PRK01889 GTPase RsgA; Reviewed 98.0 3.4E-06 7.4E-11 90.2 4.2 70 46-121 185-254 (356)
497 PF00488 MutS_V: MutS domain V 98.0 0.00013 2.8E-09 73.5 15.2 52 184-237 120-173 (235)
498 TIGR03518 ABC_perm_GldF glidin 98.0 0.001 2.2E-08 67.3 21.7 218 341-605 2-239 (240)
499 TIGR00416 sms DNA repair prote 98.0 1.5E-05 3.2E-10 87.9 8.8 62 185-246 169-247 (454)
500 PRK08149 ATP synthase SpaL; Va 98.0 8.7E-06 1.9E-10 88.2 6.6 73 42-117 138-216 (428)
No 1
>KOG0061|consensus
Probab=100.00 E-value=3.7e-110 Score=938.86 Aligned_cols=582 Identities=35% Similarity=0.606 Sum_probs=515.3
Q ss_pred CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625 15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94 (612)
Q Consensus 15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~ 94 (612)
...++.++|+|++++.+.+ ....|++|+|||++++|||++||||||||||||||++|+|+.... ...+|+|++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~-----~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~--~~~~G~ilv 92 (613)
T KOG0061|consen 20 YLEPVKLSFRNLTLSSKEK-----SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG--LKLSGEILL 92 (613)
T ss_pred ccccceeEEEEEEEEecCC-----CCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC--CcceEEEEE
Confidence 4557789999999987542 114688999999999999999999999999999999999998742 358999999
Q ss_pred CCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccC-----CC
Q psy12625 95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK-----HL 169 (612)
Q Consensus 95 ~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~-----~L 169 (612)
||++ .+.+.+++.+|||.|||.++|++||+|++.|++++|+|...++++++++|+++++++||.+++|++++ ++
T Consensus 93 NG~~-~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgi 171 (613)
T KOG0061|consen 93 NGRP-RDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGL 171 (613)
T ss_pred CCcc-CchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcc
Confidence 9977 55577899999999999999999999999999999999888899999999999999999999999997 59
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|++|+++|
T Consensus 172 SGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy 251 (613)
T KOG0061|consen 172 SGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY 251 (613)
T ss_pred ccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccChhhHHhhcCCCCCCCCCchhHHHHhcc-c--cccccccccCCCcccccC-CcchHhHHHHHHhhcCCccchhcc
Q psy12625 250 QGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSL-E--ADRMFEPCTNGKFFNANS-SHNTKTVLKTIEEKGLSSKEFYSV 325 (612)
Q Consensus 250 ~G~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~-~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 325 (612)
+|+++++.+||++.|++||++.||+||++|++. + .+...+..+........+ .....+... ...+ . +...
T Consensus 252 ~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~----~~~~ 325 (613)
T KOG0061|consen 252 SGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLE-ALEK-S----LSTS 325 (613)
T ss_pred ecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHH-HHhh-h----cccc
Confidence 999999999999999999999999999999873 1 111111111100000000 000000000 0000 0 0001
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy12625 326 LSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTAL 405 (612)
Q Consensus 326 ~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~~~~ 405 (612)
.+.+....++||.|+++|++|.+++.+|||.+...|+++.+++|+++|.+||+++++..+++++.|++||.+.++.|.++
T Consensus 326 ~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~ 405 (613)
T KOG0061|consen 326 KKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSM 405 (613)
T ss_pred cccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111127899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHH
Q psy12625 406 SSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQG 485 (612)
Q Consensus 406 ~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~ 485 (612)
++++..|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|.+|+|||+|+++++.+|++|++++++..+++++
T Consensus 406 ~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s 485 (613)
T KOG0061|consen 406 FGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAES 485 (613)
T ss_pred HhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCC--cc
Q psy12625 486 MGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEE--YC 562 (612)
Q Consensus 486 ~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~--~C 562 (612)
+|+++|++ ++...|++++|++++++++|+|||++.++||.||+|++|+||++|++||++.|||+. ....|... .|
T Consensus 486 ~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~--~~~~~~~~~~~~ 563 (613)
T KOG0061|consen 486 LGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSG--GSSRCFLSGNLC 563 (613)
T ss_pred HHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhc--cccccccCcCCc
Confidence 99999999 889999999999999999999999999999999999999999999999999999973 35567432 56
Q ss_pred ccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy12625 563 HFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNKS 612 (612)
Q Consensus 563 ~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~~~~~~ 612 (612)
...+|.++++..++++.+.|.|+.++++++++|++++|++|+++.|++++
T Consensus 564 ~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~~ 613 (613)
T KOG0061|consen 564 CESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKRR 613 (613)
T ss_pred ccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 67899999999999999999999999999999999999999999999875
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-106 Score=919.32 Aligned_cols=582 Identities=26% Similarity=0.441 Sum_probs=483.7
Q ss_pred CCCceeEEEEeEEEEEEeecc-------------------ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHH
Q psy12625 15 PRKHFNLLFQDISYSALYYDT-------------------HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDI 75 (612)
Q Consensus 15 ~~~~~~l~~~~ls~~~~~~~~-------------------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~ 75 (612)
.+.++.+++.|++|+.+.... .+++++++++|+|+|+++++||++||+||||||||||||+
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 345789999999999854310 0123346789999999999999999999999999999999
Q ss_pred HHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q psy12625 76 LAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155 (612)
Q Consensus 76 l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~ 155 (612)
|+|+.+|. ..+|+|.+||+++. ...++.+|||+|++.+++.+||+||+.+++.++.+...++++++++++++++.
T Consensus 114 LaG~~~~~---~~sG~I~inG~~~~--~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~ 188 (659)
T PLN03211 114 LAGRIQGN---NFTGTILANNRKPT--KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISE 188 (659)
T ss_pred HhCCCCCC---ceeEEEEECCEECc--hhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 99998752 25899999999853 23456799999999999999999999998877665445566677889999999
Q ss_pred cCCccccCccc-----CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625 156 LSISTCKNTLT-----KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSA 230 (612)
Q Consensus 156 lgL~~~~~~~~-----~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 230 (612)
+||++++|+++ ++||||||||++||++|+.+|+||+|||||+|||+.++.++++.|++++++|+|||+++||++.
T Consensus 189 lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~ 268 (659)
T PLN03211 189 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS 268 (659)
T ss_pred cCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence 99999887654 5699999999999999999999999999999999999999999999999889999999999986
Q ss_pred HHHhcccceeeecCCeEEEecCccChhhHHhhcCCCCCCCCCchhHHHHhcccccccc--ccccCCC-----cccccCCc
Q psy12625 231 SLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMF--EPCTNGK-----FFNANSSH 303 (612)
Q Consensus 231 ~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~ 303 (612)
++.++||++++|++|++++.|+++++.+||++.|++||++.|||||++|++....+.. ...+... ...+.+..
T Consensus 269 ~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (659)
T PLN03211 269 RVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL 348 (659)
T ss_pred HHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc
Confidence 7899999999999999999999999999999999999999999999999983211100 0000000 00111000
Q ss_pred ch--HhHHHHHHhhcCCccch----hcc-cCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHh
Q psy12625 304 NT--KTVLKTIEEKGLSSKEF----YSV-LSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMY 376 (612)
Q Consensus 304 ~~--~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f 376 (612)
.. ..............+.. ... ......+.++||+|+++|++|++++ +||+.+...|+++++++|+++|++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf 427 (659)
T PLN03211 349 APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMW 427 (659)
T ss_pred cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000000000000000 000 0011224578999999999999988 8999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhh
Q psy12625 377 RGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTV 456 (612)
Q Consensus 377 ~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~ 456 (612)
|+++ ..++++|.|++||+++++.+.++++++..|+.||+||.||+.+|+|++++|++|++++|+|+.++.+++|++|+
T Consensus 428 ~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~ 505 (659)
T PLN03211 428 WHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVT 505 (659)
T ss_pred hcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 9985 67899999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred hccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccCh
Q psy12625 457 YFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSF 535 (612)
Q Consensus 457 Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp 535 (612)
|||+||++++.+|++|+++++++.++++++|+++|++ ++..+|+.++|++++++++||||+++ +||+||+|++|+||
T Consensus 506 Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~ 583 (659)
T PLN03211 506 YWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYIST 583 (659)
T ss_pred eEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCH
Confidence 9999999999999999999999999999999999999 99999999999999999999999996 79999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC---ccccCCCccccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy12625 536 LKHSLEGILLSVYGYDRD---QLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQ 606 (612)
Q Consensus 536 ~~y~~e~l~~n~f~~~~~---~~~C~~~~C~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~ 606 (612)
++|+|||++.|||++.+. .++|++..|....+..++...++++.+.|.|+++|++++++|++++|++|++.
T Consensus 584 ~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 584 TFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999975432 35787655543333334555555566899999999999999999999999754
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.7e-106 Score=915.68 Aligned_cols=585 Identities=30% Similarity=0.505 Sum_probs=503.7
Q ss_pred CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
.+..++++++. +++... ++.+++++++|+|+|+++++||+++|+|||||||||||++|+|+.+|. ...+|+|.+||
T Consensus 14 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~--~~~~G~i~~~g 89 (617)
T TIGR00955 14 VAQDGSWKQLV-SRLRGC-FCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKG--VKGSGSVLLNG 89 (617)
T ss_pred ccccchhhhhh-hhcccc-cccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CcceeEEEECC
Confidence 34567777776 543321 122345688999999999999999999999999999999999998752 23589999999
Q ss_pred EeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccC------CCC
Q psy12625 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK------HLS 170 (612)
Q Consensus 97 ~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~------~LS 170 (612)
+++. ...+++.+|||+|+|.+++.+||+||+.|++.++.+...++++++++++++++.+||.+++|+.++ +||
T Consensus 90 ~~~~-~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LS 168 (617)
T TIGR00955 90 MPID-AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLS 168 (617)
T ss_pred EECC-HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcC
Confidence 9854 355788999999999999999999999999988877666777788899999999999999999987 499
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||||||+||+||+.+|++++|||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|+++|+
T Consensus 169 gGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~ 248 (617)
T TIGR00955 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYL 248 (617)
T ss_pred cchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEE
Confidence 99999999999999999999999999999999999999999999988999999999998789999999999999999999
Q ss_pred cCccChhhHHhhcCCCCCCCCCchhHHHHhcccccccccc-cc--CCCcccccCCcchHh---HHHHHHhh--cCCccch
Q psy12625 251 GTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEP-CT--NGKFFNANSSHNTKT---VLKTIEEK--GLSSKEF 322 (612)
Q Consensus 251 G~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~ 322 (612)
|+++++.+||++.|++||++.||+||++|++...+..... .+ +.....+..+....+ .......+ +...+
T Consensus 249 G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-- 326 (617)
T TIGR00955 249 GSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKD-- 326 (617)
T ss_pred CCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccc--
Confidence 9999999999999999999999999999998321110000 00 000001111100000 00000000 00000
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy12625 323 YSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMF 402 (612)
Q Consensus 323 ~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~ 402 (612)
........+..+|++|++.|++|++++.+|||.++.+|+++.+++|+++|++||++++++.+++++.|++|+++++++|
T Consensus 327 -~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f 405 (617)
T TIGR00955 327 -SENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTF 405 (617)
T ss_pred -cccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0011223467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHH
Q psy12625 403 TALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLY 482 (612)
Q Consensus 403 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~ 482 (612)
.++++.+..|+.||++|.||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+|+.|+++++++.++
T Consensus 406 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~ 485 (617)
T TIGR00955 406 QNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANV 485 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHH
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCC--
Q psy12625 483 SQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYE-- 559 (612)
Q Consensus 483 ~~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~-- 559 (612)
++++|++++++ ++..+|..++|++++++++|+||+++.++||+||+|++|+||++|++||++.|||++. ...+|++
T Consensus 486 ~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~-~~~~c~~~~ 564 (617)
T TIGR00955 486 ATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDV-DNIECTSAN 564 (617)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCC-ccccccCcC
Confidence 99999999999 8999999999999999999999999999999999999999999999999999999742 2346853
Q ss_pred --CccccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy12625 560 --EYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNK 611 (612)
Q Consensus 560 --~~C~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~~~~~ 611 (612)
..|+. +|+++|+.||++.++.|.|+++|++++++|++++|++|+++.|++|
T Consensus 565 ~~~~c~~-~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 565 TTGPCPS-SGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cCCCCCc-ChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34864 6899999999999999999999999999999999999999988876
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.6e-101 Score=929.72 Aligned_cols=584 Identities=23% Similarity=0.361 Sum_probs=493.4
Q ss_pred CceeEEEEeEEEEEEeecc---ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE
Q psy12625 17 KHFNLLFQDISYSALYYDT---HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93 (612)
Q Consensus 17 ~~~~l~~~~ls~~~~~~~~---~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~ 93 (612)
.+..++|+||+|.++.+.. ...+.+++++|+|||++++|||+++|+||||||||||||+|+|+.++ ...+|+|.
T Consensus 864 ~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~---g~~~G~I~ 940 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIR 940 (1470)
T ss_pred CcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC---CcccceEE
Confidence 3558999999999964321 11122456799999999999999999999999999999999999653 24689999
Q ss_pred ECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc-----CC
Q psy12625 94 INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT-----KH 168 (612)
Q Consensus 94 ~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----~~ 168 (612)
+||++.. ...+++.+|||+|+|.+++.+||+||+.+++.++.+...++++++++++++++.+||.+++|+++ ++
T Consensus 941 inG~~~~-~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~ 1019 (1470)
T PLN03140 941 ISGFPKK-QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTG 1019 (1470)
T ss_pred ECCccCC-hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCC
Confidence 9998843 24467789999999999999999999999988776655566667788999999999999999987 47
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC-CeE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYC 247 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~i 247 (612)
|||||||||+||++|+.+|++|||||||||||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 9999999999999999999999999999999999999999999999999999999999998778899999999996 899
Q ss_pred EEecCc----cChhhHHhhc-CC-CCCCCCCchhHHHHhccccccccccccCCCcccccCCcchH---hHHHHHHhhcCC
Q psy12625 248 TYQGTV----PGLVPYLSDF-GY-QCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTK---TVLKTIEEKGLS 318 (612)
Q Consensus 248 v~~G~~----~~~~~~f~~~-g~-~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 318 (612)
+|+|++ +++.+||++. |. +||++.|||||++|++....+. .........|+.+...+ +.+.....+...
T Consensus 1100 v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1177 (1470)
T PLN03140 1100 IYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--KLGIDFAEHYKSSSLYQRNKALVKELSTPPPG 1177 (1470)
T ss_pred EEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--cccchHHHHHhccHHHHHHHHHHHHhccCCCC
Confidence 999996 5789999997 66 4999999999999997321110 00000111233331111 111111110000
Q ss_pred ccchhcccCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHH
Q psy12625 319 SKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDA---ARVHNNLSLLFF 395 (612)
Q Consensus 319 ~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~---~~~~~~~g~lff 395 (612)
.. .......+++|+|+|++.|++|+++++||||.++.+|+++++++|+++|++||+++++. .+++++.|++|+
T Consensus 1178 ~~----~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~ 1253 (1470)
T PLN03140 1178 AS----DLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYA 1253 (1470)
T ss_pred cc----ccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHH
Confidence 00 11123567899999999999999999999999999999999999999999999999865 567788999999
Q ss_pred HHHHHHHHHHHHhhhcccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHH
Q psy12625 396 STMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLI 475 (612)
Q Consensus 396 ~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~ 475 (612)
+++++.+..+.++++.|+.||+||+|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+|+++++.+|++|+++
T Consensus 1254 ~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~ 1333 (1470)
T PLN03140 1254 AVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFI 1333 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Confidence 99999998888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCc
Q psy12625 476 CVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQ 554 (612)
Q Consensus 476 ~~l~~~~~~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~ 554 (612)
++++.++++++|++++++ |+.++|..++|++++++++|+||++|.++||+||+|++|+||++|+++|++.|||++...+
T Consensus 1334 ~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~ 1413 (1470)
T PLN03140 1334 SFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDT 1413 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCc
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999742212
Q ss_pred cccCCCccccCChhHH-HHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy12625 555 LKCYEEYCHFKSPAKF-LDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNK 611 (612)
Q Consensus 555 ~~C~~~~C~~~~g~~~-L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~~~~~ 611 (612)
.+|+.... ..+++++ ++.||++++++|++++++++|+++|++++++++++....+|
T Consensus 1414 ~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1414 IKVPGGAP-DPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred ccCCCCCC-CCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 23321101 1356666 67899999999999999999999999999999998776665
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.6e-101 Score=933.55 Aligned_cols=575 Identities=23% Similarity=0.380 Sum_probs=492.0
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++++||++++.. +.+++.+|+|||+++++||++||+||||||||||||+|+|+.++ +.+.+|+|.+||++
T Consensus 758 ~~l~~~nl~~~~~~------~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~--g~~~~G~I~i~G~~ 829 (1394)
T TIGR00956 758 DIFHWRNLTYEVKI------KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTT--GVITGGDRLVNGRP 829 (1394)
T ss_pred ceEEEEeeEEEecC------CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC--CCcceeEEEECCEE
Confidence 46899999999832 23457899999999999999999999999999999999999873 12468999999998
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccC----CCChhhh
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK----HLSGGQK 174 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~----~LSgGer 174 (612)
+. ..+++.+|||+|+|.+++.+||+||+.+++.++.+...++++++++++++++.+||.+++|+.++ +||||||
T Consensus 830 ~~--~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 830 LD--SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred CC--hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHh
Confidence 63 34678899999999999999999999999888766556666777889999999999999999998 7999999
Q ss_pred hHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC-eEEEecC
Q psy12625 175 KRLSIALELLSNPS-IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG-YCTYQGT 252 (612)
Q Consensus 175 qRv~ia~aL~~~p~-illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G-~iv~~G~ 252 (612)
|||+||+||+.+|+ ||+|||||||||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++++|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999999889999999999987678899999999997 9999999
Q ss_pred c----cChhhHHhhcCC-CCCCCCCchhHHHHhccccccccccccCCCcccccCCcchH---hHHHHHHhhcCCccchhc
Q psy12625 253 V----PGLVPYLSDFGY-QCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTK---TVLKTIEEKGLSSKEFYS 324 (612)
Q Consensus 253 ~----~~~~~~f~~~g~-~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 324 (612)
+ +++.+||++.|+ +||++.|||||++|+++..... .........|+.+...+ +.+........... ...
T Consensus 988 ~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~ 1064 (1394)
T TIGR00956 988 LGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--HANQDYHEVWRNSSEYQAVKNELDRLEAELSKAE-DDN 1064 (1394)
T ss_pred cccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--chhccHHHHHhcCHHHHHHHHHHHHhhcccccCc-ccc
Confidence 7 467899999996 9999999999999998431110 00001111233221111 11111111000000 000
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy12625 325 VLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTA 404 (612)
Q Consensus 325 ~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~~~ 404 (612)
.......+++|+++|+++|++|++++.||||.++..|+++++++|+++|++||++++++.++++|.|++|+.+++..+.
T Consensus 1065 ~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~- 1143 (1394)
T TIGR00956 1065 DPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL- 1143 (1394)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-
Confidence 0112245789999999999999999999999999999999999999999999999999999999999999988877665
Q ss_pred HHHhhhcccchhhHH-HhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHH-------HHHHHHHH
Q psy12625 405 LSSMIITYPLEFEIT-RREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDR-------FAMFLLIC 476 (612)
Q Consensus 405 ~~~~~~~f~~er~v~-~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~-------f~~f~~~~ 476 (612)
+..+++.|+.||.++ +||+++|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.. |++|++++
T Consensus 1144 ~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~ 1223 (1394)
T TIGR00956 1144 IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLS 1223 (1394)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHH
Confidence 346677888899886 8999999999999999999999999999999999999999999988765 99999999
Q ss_pred HHHHHHHHHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCcc
Q psy12625 477 VFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQL 555 (612)
Q Consensus 477 ~l~~~~~~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~ 555 (612)
+++.++++++|++++++ |+..+|+.++|++++++++||||+++.++||.||+|++|+||++|++||++.|||++ .++
T Consensus 1224 ~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~--~~~ 1301 (1394)
T TIGR00956 1224 TMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLAD--VPV 1301 (1394)
T ss_pred HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCC--Cee
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999999963 355
Q ss_pred ccCC--------------------------------------CccccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHH
Q psy12625 556 KCYE--------------------------------------EYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKI 597 (612)
Q Consensus 556 ~C~~--------------------------------------~~C~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~ 597 (612)
+|.+ .+|++.+|+++|+.+|++.++.|+|++++++|++++ +
T Consensus 1302 ~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~ 1380 (1394)
T TIGR00956 1302 TCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-I 1380 (1394)
T ss_pred ecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-H
Confidence 5532 368899999999999999999999999999998888 8
Q ss_pred HHHHHHHHhhhcc
Q psy12625 598 ASYLVLYFQINRN 610 (612)
Q Consensus 598 ~~~~~L~~~~~~~ 610 (612)
+++++|+|+.|.+
T Consensus 1381 ~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1381 IATVFFYWLARVP 1393 (1394)
T ss_pred HHHHhhheEEEcC
Confidence 8999998886544
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.9e-101 Score=931.52 Aligned_cols=589 Identities=20% Similarity=0.313 Sum_probs=493.3
Q ss_pred CCCceeEEEEeEEEEEEeecc-----------------c-----cccccccccccceEEEEeCCeEEEEECCCCCcHHHH
Q psy12625 15 PRKHFNLLFQDISYSALYYDT-----------------H-----SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKL 72 (612)
Q Consensus 15 ~~~~~~l~~~~ls~~~~~~~~-----------------~-----~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTL 72 (612)
+++.+.+.|+||++....... . ..+..++++|+|+|+++++||+++|+||||||||||
T Consensus 24 ~~~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTL 103 (1394)
T TIGR00956 24 KPYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTL 103 (1394)
T ss_pred CCCeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHH
Confidence 445788999999998743210 0 112234679999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCceeEEEECCEeccch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC----CCCHHHHHH
Q psy12625 73 LDILAGYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN----QYSRKAKES 147 (612)
Q Consensus 73 L~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~----~~~~~~~~~ 147 (612)
||+|+|+.++. ..+.+|+|.+||+++.+. ..+++.++||+|+|.+++.+||+||+.|++.++.+. ..++++..+
T Consensus 104 Lk~LaG~~~~~-~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~ 182 (1394)
T TIGR00956 104 LKTIASNTDGF-HIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAK 182 (1394)
T ss_pred HHHHhCCCCCC-CCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Confidence 99999997421 124799999999986432 335667999999999999999999999998876542 233444333
Q ss_pred H-HHHHHHHcCCccccCccc-----CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q psy12625 148 K-VDSIADSLSISTCKNTLT-----KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTM 220 (612)
Q Consensus 148 ~-v~~~l~~lgL~~~~~~~~-----~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~t 220 (612)
+ ++++++.+||++++|+++ ++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|
T Consensus 183 ~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~t 262 (1394)
T TIGR00956 183 HIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTT 262 (1394)
T ss_pred HHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCE
Confidence 4 577899999999998876 46999999999999999999999999999999999999999999999997 5999
Q ss_pred EEEEecCCchHHHhcccceeeecCCeEEEecCccChhhHHhhcCCCCCCCCCchhHHHHhcccccccc-ccccCC-----
Q psy12625 221 IICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMF-EPCTNG----- 294 (612)
Q Consensus 221 vi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~-~~~~~~----- 294 (612)
||+++|||+.+++++||++++|++|+++++|+++++.+||+++|++||++.|||||++|++.+.++.. ...++.
T Consensus 263 vii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~ 342 (1394)
T TIGR00956 263 PLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTP 342 (1394)
T ss_pred EEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCH
Confidence 99999999878999999999999999999999999999999999999999999999999984322111 111110
Q ss_pred -C-cccccCCcchH---hHHHHHHhh---cCC--------ccchhcccCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHH
Q psy12625 295 -K-FFNANSSHNTK---TVLKTIEEK---GLS--------SKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLT 358 (612)
Q Consensus 295 -~-~~~~~~~~~~~---~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~ 358 (612)
+ ...|+.+...+ +.+.....+ ... ..+.........++..|+|+|+++|++|++++.+|||.++
T Consensus 343 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~ 422 (1394)
T TIGR00956 343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFT 422 (1394)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 0 01122221000 011000000 000 0000001122346789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHhhccCCCcchHHHHHHHH
Q psy12625 359 KVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATM 438 (612)
Q Consensus 359 ~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~ 438 (612)
.+|+++++++|+++|++||++++++.++++|.|++||++++.+|+++.++. .+..||+||+||+.+++|++++|++|++
T Consensus 423 ~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~-~~~~eR~i~~re~~~~~Y~~~ay~la~~ 501 (1394)
T TIGR00956 423 LFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIA-SMYEARPIVEKHRKYALYHPSADAIASI 501 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcceeeeccccccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986654 4556999999999999999999999999
Q ss_pred HHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheee
Q psy12625 439 VADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYF 517 (612)
Q Consensus 439 ~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~ 517 (612)
++|+|+.++.+++|++|+|||+||++++++|++|++++++++++++++++++|++ ++..+|+.+++++++++++|+||+
T Consensus 502 l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~ 581 (1394)
T TIGR00956 502 ISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFA 581 (1394)
T ss_pred HHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred cCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccC---------------CCccc---------cCChhHHHH-
Q psy12625 518 VLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCY---------------EEYCH---------FKSPAKFLD- 572 (612)
Q Consensus 518 i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~---------------~~~C~---------~~~g~~~L~- 572 (612)
+|.++||+||+|++|+||++|+|||++.|||+. .+++|+ ...|. +.+|+++|+
T Consensus 582 i~~~~mp~~~~W~~yisp~~yafeal~~nef~~--~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~ 659 (1394)
T TIGR00956 582 IPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHG--RRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL 659 (1394)
T ss_pred cChhhccHHHHHHHHcCHHHHHHHHHHHhhhcC--CcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh
Confidence 999999999999999999999999999999963 467884 12473 458999998
Q ss_pred HcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12625 573 ALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQI 607 (612)
Q Consensus 573 ~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~ 607 (612)
.+|++.+++|+|++||++|+++|++++++++.+..
T Consensus 660 ~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 660 SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999998865
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.6e-98 Score=903.60 Aligned_cols=585 Identities=22% Similarity=0.310 Sum_probs=480.9
Q ss_pred CCCceeEEEEeEEEEEEeecc------------------c---c---ccccccccccceEEEEeCCeEEEEECCCCCcHH
Q psy12625 15 PRKHFNLLFQDISYSALYYDT------------------H---S---YSIKSKDILKDISGVFVSKELSVILGPSGSGKT 70 (612)
Q Consensus 15 ~~~~~~l~~~~ls~~~~~~~~------------------~---~---~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKS 70 (612)
+.+.+.+.|+||++....... . + .++.++++|+|+|+.++|||+++|+||||||||
T Consensus 126 ~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKS 205 (1470)
T PLN03140 126 KLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKT 205 (1470)
T ss_pred CCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHH
Confidence 456778999999998751110 0 0 122356799999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-------CCCHH
Q psy12625 71 KLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-------QYSRK 143 (612)
Q Consensus 71 TLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-------~~~~~ 143 (612)
||||+|+|+.+|. ...+|+|.+||+++.+. ..++.++||+|+|.+++.+||+||+.|+++++.+. ..+++
T Consensus 206 TLLk~LaG~l~~~--~~~~G~I~~nG~~~~~~-~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ 282 (1470)
T PLN03140 206 TLLLALAGKLDPS--LKVSGEITYNGYRLNEF-VPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARR 282 (1470)
T ss_pred HHHHHHhCCCCCC--CcceeEEEECCEechhh-cccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHH
Confidence 9999999998763 23589999999986432 23678999999999999999999999998765321 11111
Q ss_pred HH------------------------HHHHHHHHHHcCCccccCccc-----CCCChhhhhHHHHHHHHhhCCCEEEEeC
Q psy12625 144 AK------------------------ESKVDSIADSLSISTCKNTLT-----KHLSGGQKKRLSIALELLSNPSIIFLDE 194 (612)
Q Consensus 144 ~~------------------------~~~v~~~l~~lgL~~~~~~~~-----~~LSgGerqRv~ia~aL~~~p~illlDE 194 (612)
++ +..++++++.+||++++|+.+ ++|||||||||+||++|+.+|++++|||
T Consensus 283 ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDE 362 (1470)
T PLN03140 283 EKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDE 362 (1470)
T ss_pred HHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeC
Confidence 11 123578999999999887654 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhhHHhhcCCCCCCCCCc
Q psy12625 195 PTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNP 273 (612)
Q Consensus 195 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~~ 273 (612)
||+|||+.++.++++.|+++++ .|+|||+++|||..+++++||+|++|++|+++|+|+++++.+||+++|++||++.||
T Consensus 363 PTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ 442 (1470)
T PLN03140 363 ISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGT 442 (1470)
T ss_pred CCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCCh
Confidence 9999999999999999999987 689999999999888999999999999999999999999999999999999999999
Q ss_pred hhHHHHhccccccccccccCC-C----------cccccCCcchHhHHHHHHhhcCCccchhcccCCCCCCCCCHHHHHHH
Q psy12625 274 ADYVIEVSLEADRMFEPCTNG-K----------FFNANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCI 342 (612)
Q Consensus 274 ad~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~ 342 (612)
|||++|++.+.++.. .+.+. . ...|+++... ..+.+..+...............++|..+++.|++.
T Consensus 443 ADFl~~v~s~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~ 520 (1470)
T PLN03140 443 ADFLQEVTSKKDQEQ-YWADRNKPYRYISVSEFAERFKSFHVG-MQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKA 520 (1470)
T ss_pred HHHHHHhcCchhhhh-hhhccCCccccCCHHHHHHHHHhcHHH-HHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHH
Confidence 999999984322100 00000 0 0011111000 011111000000000000111234588999999999
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHH
Q psy12625 343 LLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDA---ARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEIT 419 (612)
Q Consensus 343 l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~---~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~ 419 (612)
|++|++++.+||+..+..|+++.+++|+++|++||+++.++ .+.+.+.|++||++++.+|+++. .+..++.||+||
T Consensus 521 ~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~-~l~~~~~~r~vf 599 (1470)
T PLN03140 521 CWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFA-ELALMIQRLPVF 599 (1470)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccchh
Confidence 99999999999999999999999999999999999997542 34667889999999999988864 467777899999
Q ss_pred HhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhH
Q psy12625 420 RREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKN 498 (612)
Q Consensus 420 ~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~ 498 (612)
+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|++++++++++++++++++|++ ++..+
T Consensus 600 ~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~ 679 (1470)
T PLN03140 600 YKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMII 679 (1470)
T ss_pred HHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCc-cccCCCccccCChhHHHHHcCCC
Q psy12625 499 GVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQ-LKCYEEYCHFKSPAKFLDALDMK 577 (612)
Q Consensus 499 a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~-~~C~~~~C~~~~g~~~L~~~~~~ 577 (612)
|+.+++++++++++|+||+++.++||+||+|++|+||++|||||+++|||...... ..|... ....|+++|+.+|+.
T Consensus 680 A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~--~~~~G~~~L~~~g~~ 757 (1470)
T PLN03140 680 ANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDN--STRLGTAVLNIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCC--CcccHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999999999543221 112111 246899999999998
Q ss_pred CC--CchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12625 578 NG--DYSYDLFFLIVSYILVKIASYLVLYFQI 607 (612)
Q Consensus 578 ~~--~~~~~~~il~~~~~~~~~~~~~~L~~~~ 607 (612)
.+ ++|+|+++|++|+++|+++++++|++..
T Consensus 758 ~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 5699999999999999999999998765
No 8
>KOG0065|consensus
Probab=100.00 E-value=1.5e-96 Score=840.89 Aligned_cols=558 Identities=25% Similarity=0.413 Sum_probs=469.7
Q ss_pred cccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCC
Q psy12625 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLL 118 (612)
Q Consensus 39 ~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l 118 (612)
+.+++++|+|||+.++||.++||||+||||||||||+|||+... +..+|+|++||.+. +.+.++|.+|||.|+|.|
T Consensus 800 qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~---G~I~Gdi~i~G~p~-~q~tF~R~~GYvqQ~DiH 875 (1391)
T KOG0065|consen 800 QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG---GYIEGDILISGFPK-DQETFARVSGYVEQQDIH 875 (1391)
T ss_pred cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc---ceEEeEEEECCeeC-chhhhccccceeeccccc
Confidence 44678999999999999999999999999999999999999762 45899999999994 447899999999999999
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCC----CChhhhhHHHHHHHHhhCC-CEEEEe
Q psy12625 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH----LSGGQKKRLSIALELLSNP-SIIFLD 193 (612)
Q Consensus 119 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~----LSgGerqRv~ia~aL~~~p-~illlD 193 (612)
.+.+||+|.|.|+|.+|+|...+.+++.+.|+++++.++|++++|..||. ||.+||||++||.+|+.|| .||+||
T Consensus 876 ~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD 955 (1391)
T KOG0065|consen 876 SPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD 955 (1391)
T ss_pred CcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec
Confidence 99999999999999999999999999999999999999999999999886 9999999999999999999 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC-CeEEEecCccC----hhhHHhhcC-CCC
Q psy12625 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYCTYQGTVPG----LVPYLSDFG-YQC 267 (612)
Q Consensus 194 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~~~----~~~~f~~~g-~~~ 267 (612)
|||||||+.++..|++.+|+++++|+||+||+|||+.++++.||++++|++ |++||.|+..+ +++||++.| .+|
T Consensus 956 EPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~ 1035 (1391)
T KOG0065|consen 956 EPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKC 1035 (1391)
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccC
Confidence 999999999999999999999999999999999999999999999999986 79999999876 456999886 899
Q ss_pred CCCCCchhHHHHhccccccccccccCCCcccccCCcchH---hHHHHHHhhcCCccchhcccCCCCCCCCCHHHHHHHHH
Q psy12625 268 PSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTK---TVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILL 344 (612)
Q Consensus 268 p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~ 344 (612)
|+..|||||++|+++...+. .....-.+.|+++...+ +.+++...+ .+. .......+.+|+.|+|.|++.++
T Consensus 1036 ~~~~NPA~~mLevi~~~~~~--~~~~D~a~~w~~S~e~k~~~e~v~~l~~~-~~~--~~~~~~~~~~fa~s~~~Q~k~~l 1110 (1391)
T KOG0065|consen 1036 ISDENPAEWMLEVIGAGAEA--SLSVDFAEIWKNSEEYKRNKELVKELSQP-PPG--FSTDLEFKTRFAQSLWYQFKLCL 1110 (1391)
T ss_pred CCCCChHHHHHhhccccccc--ccCccHHHHHhccHHHHHHHHHHHHHhcC-Ccc--CCcccccccccchhHHHHHHHHH
Confidence 99999999999998542221 01111112355542221 122222221 111 00123344668999999999999
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHhhcc
Q psy12625 345 KRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHF 424 (612)
Q Consensus 345 ~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~ 424 (612)
+|++..+||+|.++.+|++..++.|+++|+.||++|++.++.++..|++|+.+++..-+........+..||.+++||++
T Consensus 1111 ~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~ 1190 (1391)
T KOG0065|consen 1111 WRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERA 1190 (1391)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecc
Confidence 99999999999999999999999999999999999999999999999999998887655444455566779999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhHHHHHH
Q psy12625 425 NRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFG 503 (612)
Q Consensus 425 ~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~a~~~~ 503 (612)
+|+||+.+|++|++++|+|+.++++++|.+|+|+|+|+.+++.+|++|++.+++..++..++|+++.++ ||.++|..+.
T Consensus 1191 s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~ 1270 (1391)
T KOG0065|consen 1191 SNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIA 1270 (1391)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998888 9999999999
Q ss_pred HHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCC-------CccccCChhHHHHHcC-
Q psy12625 504 PLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYE-------EYCHFKSPAKFLDALD- 575 (612)
Q Consensus 504 ~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~-------~~C~~~~g~~~L~~~~- 575 (612)
+.++..+.+||||++|++.||.||+||||+||++|..++++..+++ | .+..|.. +.|..+-|+.+-..+|
T Consensus 1271 s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~-d-~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~ 1348 (1391)
T KOG0065|consen 1271 SLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLG-D-VEVTCEDSEMNYFDPPSGQTCGEFMEDFFGE 1348 (1391)
T ss_pred HHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhC-C-CceeeecCCccccCCCCCcCHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999997 3 3667742 1233333333334444
Q ss_pred ---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12625 576 ---MKNGDYSYDLFFLIVSYILVKIASYLVLYFQI 607 (612)
Q Consensus 576 ---~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~ 607 (612)
+..+..-....+.+.+.+++.+++.+..++..
T Consensus 1349 ~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1349 GTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred CcceeccCcceeEEEEeeeehHHHHHHHHHHHHHH
Confidence 33333333333444444555555544444443
No 9
>KOG0065|consensus
Probab=100.00 E-value=7.4e-89 Score=777.77 Aligned_cols=558 Identities=24% Similarity=0.386 Sum_probs=476.0
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l 122 (612)
..+|+|+|+.++||+++.++||+||||||||++|+|-.+. .....|+|.+||.+..+... ++.++|++|+|.|+|.+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~--~~~~~~~isy~G~~~~e~~~-~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDN--FLKSSGEITYNGHDLKEFVP-KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcc--cccCCCceeECCCccccccc-CceEEecccccccccee
Confidence 4699999999999999999999999999999999998763 23357899999998654333 78899999999999999
Q ss_pred CHHHHHHHHHHhccCCC----CCHHHHHH-HHHHHHHHcCCccccCcccC-----CCChhhhhHHHHHHHHhhCCCEEEE
Q psy12625 123 TVEESLTVAAHLKLGNQ----YSRKAKES-KVDSIADSLSISTCKNTLTK-----HLSGGQKKRLSIALELLSNPSIIFL 192 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~~~-----~LSgGerqRv~ia~aL~~~p~illl 192 (612)
||+|+|.|+++++.+.. .++.++.. ..+.+++.+||++|+|+++| ++||||||||++|.+++.+|+++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 99999999999987732 22222222 57899999999999999987 4999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhhHHhhcCCCCCCCC
Q psy12625 193 DEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNY 271 (612)
Q Consensus 193 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~ 271 (612)
||+|+|||+.++.++++.|+++++ .+.|.+++.|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~ 364 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRK 364 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCcc
Confidence 999999999999999999999998 6899999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHhccccccccccccCCCcc----------cccCCcchHhHHHHHHhhcCCccchhcccCCCCCCCCCHHHHHH
Q psy12625 272 NPADYVIEVSLEADRMFEPCTNGKFF----------NANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFC 341 (612)
Q Consensus 272 ~~ad~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~ 341 (612)
++|||+.+++.+.++...-.+++... .|.+++.. ..+....+...+..+-.......++|..+.|.|++
T Consensus 365 ~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~-~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk 443 (1391)
T KOG0065|consen 365 GTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDY-AKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVK 443 (1391)
T ss_pred CHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhh-HHHHHHhcchhhhhhccchhhcCCceeccHHHHHH
Confidence 99999999985311100000110000 01111100 11111111000000000113345678999999999
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHH
Q psy12625 342 ILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIG-DDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITR 420 (612)
Q Consensus 342 ~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~-~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~ 420 (612)
.|++|.++.+.||..++..++++.+++|+++|++|++.+ ++..+...|.|++||++++.+|+++.+....|. .||||+
T Consensus 444 ~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~-~~pv~~ 522 (1391)
T KOG0065|consen 444 ACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQ-RLPVFY 522 (1391)
T ss_pred HHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHh-hcchHH
Confidence 999999999999999999999999999999999999999 777889999999999999999999988766665 999999
Q ss_pred hhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhHH
Q psy12625 421 REHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNG 499 (612)
Q Consensus 421 rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~a 499 (612)
|||...+|+++||.++..++++|+.++.+++|.+|+||++|+.+++++||.++++++++++|+++++++++++ ++...|
T Consensus 523 Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~A 602 (1391)
T KOG0065|consen 523 KHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIA 602 (1391)
T ss_pred HhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccC------------CCcccc---
Q psy12625 500 VIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCY------------EEYCHF--- 564 (612)
Q Consensus 500 ~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~------------~~~C~~--- 564 (612)
+.++++.++.+.+++||+||.++||+||+|++|+||+.||+|++++|||. +...+|. ...|..
T Consensus 603 n~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~--~~~~~c~p~gp~y~n~~~~~~~c~~~~~ 680 (1391)
T KOG0065|consen 603 NLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFH--GRRWPCSPSGPAYDNISIENKVCAATGA 680 (1391)
T ss_pred hhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhh--cccCCCCCCCCcccccccccccchhhcc
Confidence 99999999999999999999999999999999999999999999999996 3468897 345743
Q ss_pred CCh------hHHHH-HcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12625 565 KSP------AKFLD-ALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQI 607 (612)
Q Consensus 565 ~~g------~~~L~-~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~ 607 (612)
..| +++++ .|++++.++|+|++|++||.++|.++..+++-+..
T Consensus 681 ~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 681 TLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred ccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 234 44443 46667899999999999999999999999887654
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-58 Score=436.07 Aligned_cols=234 Identities=27% Similarity=0.433 Sum_probs=211.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| ++.++|+|||+++++||+++|+||||||||||||+|.|+.+| .+|+|.++|+++
T Consensus 2 mi~i~~l~K~f----------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-----~~G~I~i~g~~~ 66 (240)
T COG1126 2 MIEIKNLSKSF----------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-----DSGSITVDGEDV 66 (240)
T ss_pred eEEEEeeeEEe----------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC-----CCceEEECCEec
Confidence 58999999998 788999999999999999999999999999999999999986 689999999875
Q ss_pred c---chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 Q---DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~---~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
. +...+|+++|+|||+.+|||++||.||++++...- .+.++++.++++.++|+++||.+.+|.++.+||||||||
T Consensus 67 ~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQR 144 (240)
T COG1126 67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQR 144 (240)
T ss_pred cchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHH
Confidence 4 23567899999999999999999999999975432 246788889999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
|+|||||+.+|+++++|||||+|||....++++.+++|+++|.|+|++||+.. .+.+.+|||++|++|+++..|+|++.
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999986 67899999999999999999988876
Q ss_pred hhHHhhcCCCCCCCCCchhHHHH
Q psy12625 257 VPYLSDFGYQCPSNYNPADYVIE 279 (612)
Q Consensus 257 ~~~f~~~g~~~p~~~~~ad~~~~ 279 (612)
|..|.+....+|+-.
T Consensus 224 --------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 224 --------FDNPKSERTRQFLSK 238 (240)
T ss_pred --------hcCCCCHHHHHHHHh
Confidence 334655555666543
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-53 Score=419.00 Aligned_cols=224 Identities=27% Similarity=0.377 Sum_probs=204.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++||++.|.. .+.+...+|+|||++|++||+++|+|.||||||||+|++.++.+| ++|+|.++|+++
T Consensus 1 mI~l~~vsK~~~~-----~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P-----tsG~v~v~G~di 70 (339)
T COG1135 1 MIELENVSKTFGQ-----TGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-----TSGSVFVDGQDL 70 (339)
T ss_pred CeEEEeeeeeecc-----CCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEEcCEec
Confidence 4789999998842 022345799999999999999999999999999999999999987 689999999887
Q ss_pred cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
... ...|++||++||+++++...||+||+.|+..+. ..++++.++++.++++.+||++.+++++.+||||||
T Consensus 71 ~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQK 147 (339)
T COG1135 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQK 147 (339)
T ss_pred ccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchh
Confidence 432 456899999999999999999999999998775 467889999999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
|||+|||||+.+|+||++|||||+|||.+...|+++|+++.+ .|.||+++||+++ -+.++||||.+|++|++++.|+.
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccH
Confidence 999999999999999999999999999999999999999986 6999999999986 68999999999999999999998
Q ss_pred cChh
Q psy12625 254 PGLV 257 (612)
Q Consensus 254 ~~~~ 257 (612)
.++.
T Consensus 227 ~~vF 230 (339)
T COG1135 227 SEVF 230 (339)
T ss_pred HHhh
Confidence 8773
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-52 Score=406.54 Aligned_cols=220 Identities=26% Similarity=0.442 Sum_probs=205.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++|||+.| +++.+++|+|++|++||+++++|||||||||+||+|.++++| ++|+|.+||+++
T Consensus 1 MI~~~nvsk~y----------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep-----t~G~I~i~g~~i 65 (309)
T COG1125 1 MIEFENVSKRY----------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-----TSGEILIDGEDI 65 (309)
T ss_pred Cceeeeeehhc----------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC-----CCceEEECCeec
Confidence 47899999988 678899999999999999999999999999999999999987 689999999998
Q ss_pred cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc--ccCcccCCCChhhhh
Q psy12625 100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST--CKNTLTKHLSGGQKK 175 (612)
Q Consensus 100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~~~~LSgGerq 175 (612)
.+. .++|+.||||-|+-.+||++||.||+.+-..+. ++++++.+++++|+++.+||+. +.++++.+|||||+|
T Consensus 66 ~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQ 142 (309)
T COG1125 66 SDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQ 142 (309)
T ss_pred ccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhh
Confidence 763 568999999999999999999999999877665 5778889999999999999974 899999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
||.+||||+.+|+++++|||+++|||.++.++-+.++++.+ -|+|||++|||.+ +.++++|||.+|++|+++..++|+
T Consensus 143 RVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~ 221 (309)
T COG1125 143 RVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPD 221 (309)
T ss_pred HHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999987 5999999999976 689999999999999999999999
Q ss_pred Chhh
Q psy12625 255 GLVP 258 (612)
Q Consensus 255 ~~~~ 258 (612)
++..
T Consensus 222 ~il~ 225 (309)
T COG1125 222 EILA 225 (309)
T ss_pred HHHh
Confidence 8764
No 13
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7e-52 Score=412.90 Aligned_cols=223 Identities=31% Similarity=0.444 Sum_probs=200.6
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y----------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p-----~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGY----------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP-----KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEE----------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCCEEEECCCch
Confidence 58999999998 678999999999999999999999999999999999999987 589999999998
Q ss_pred cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
.+. +++.+.++||||.+.....+||+|.+.++..-.... ....+++++.+++.|+.+|+.+.+++.+.+||||||||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQr 146 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQR 146 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHH
Confidence 643 567889999999998888999999999875322111 11234456689999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
|.|||||+++|++|+||||||.||..++.+++++++++++ +|+|||+++||++ ...++||++++|++|+++.+|+|++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcch
Confidence 9999999999999999999999999999999999999996 6999999999998 5789999999999999999999998
Q ss_pred hhh
Q psy12625 256 LVP 258 (612)
Q Consensus 256 ~~~ 258 (612)
+.+
T Consensus 226 vlT 228 (258)
T COG1120 226 VLT 228 (258)
T ss_pred hcC
Confidence 764
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-51 Score=397.58 Aligned_cols=223 Identities=28% Similarity=0.407 Sum_probs=205.1
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|++++|++++ +++.|++|||++|++||+++|+||||||||||||+|.|+++| .+|+|.++|+
T Consensus 6 ~~~I~vr~v~~~f----------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P-----~~GeI~i~G~ 70 (263)
T COG1127 6 EPLIEVRGVTKSF----------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP-----DKGEILIDGE 70 (263)
T ss_pred cceEEEeeeeeec----------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC-----CCCeEEEcCc
Confidence 4579999999987 889999999999999999999999999999999999999997 6899999999
Q ss_pred eccch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCCh
Q psy12625 98 RLQDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSG 171 (612)
Q Consensus 98 ~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSg 171 (612)
++.+. ...++++|++||+..||..+||+||+.|..+-. .+.+++..++.+..-|+.+||... ++..+.+|||
T Consensus 71 ~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSG 148 (263)
T COG1127 71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSG 148 (263)
T ss_pred chhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcc
Confidence 87532 346889999999999999999999999975432 356788888999999999999988 8999999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||||++||||++.||+|+++||||+||||.++..+.++++++.+ -|.|++++|||.. +++..|||+++|.+|+++..
T Consensus 149 GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 149 GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999987 5999999999986 68999999999999999999
Q ss_pred cCccChhh
Q psy12625 251 GTVPGLVP 258 (612)
Q Consensus 251 G~~~~~~~ 258 (612)
|+++++.+
T Consensus 228 Gt~~el~~ 235 (263)
T COG1127 228 GTPEELLA 235 (263)
T ss_pred CCHHHHHh
Confidence 99998753
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.9e-51 Score=398.73 Aligned_cols=211 Identities=32% Similarity=0.467 Sum_probs=185.9
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
++++||++.|.. +....++|+++|++|++||+++|+|||||||||||++|+|+.+| ++|+|.++|+++.
T Consensus 2 i~~~~v~k~y~~------~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-----t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGL------GGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-----TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEecc------CCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCceEEECCEEcC
Confidence 678999998843 22236799999999999999999999999999999999999986 6899999998875
Q ss_pred ch-----Hhh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccC-cccCCCChhh
Q psy12625 101 DH-----RML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN-TLTKHLSGGQ 173 (612)
Q Consensus 101 ~~-----~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~~~~LSgGe 173 (612)
.. ..+ ++.+|||+|+.+|.|++||+||+.++..+.. .+....+++++++++.+||.+..+ +++.+|||||
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGq 147 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQ 147 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCchhcCHHH
Confidence 32 223 5689999999999999999999999876642 222356778899999999997776 8899999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
||||+|||||+.+|+++++||||.+||+.++..++++++++++ .|+|||++|||+ .+...|||++.|.||++
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999987 499999999997 46889999999999983
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-51 Score=424.21 Aligned_cols=220 Identities=28% Similarity=0.428 Sum_probs=205.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| ++..+|+|+|+++++||+++|+||||||||||||+|||+.+| ++|+|.++|+++
T Consensus 3 ~i~l~~v~K~y----------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~-----~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSF----------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP-----TSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEc----------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEC
Confidence 68999999998 443399999999999999999999999999999999999986 689999999998
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.+....+|.+++|||+..++|+|||+||+.|+.+.+ +.++++.+++++++.+.++|++..|+++.+|||||||||+|
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAl 144 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVAL 144 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHH
Confidence 775556789999999999999999999999998775 45778899999999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 258 (612)
||||+++|++++||||+|+||...+..+...|+++.+ -|.|+|.+|||.. ++..++||+.+|++|++...|+|.++..
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 9999999999999999999999999999999999987 5899999999975 7899999999999999999999998743
No 17
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-51 Score=427.63 Aligned_cols=235 Identities=26% Similarity=0.437 Sum_probs=214.0
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++++||++.| ++..+++|+|++|++||+++|+||||||||||||+|||+..| ++|+|.++|++
T Consensus 4 ~~l~i~~v~k~y----------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p-----~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSF----------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-----SSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeec----------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEE
Confidence 468999999988 678899999999999999999999999999999999999987 68999999999
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
+.+....+|.+|+|||+..|||+|||+||+.|+.+++ ....+++.+++++++++.++|++.+++++.+|||||||||+
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVA 146 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVA 146 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHH
Confidence 8776777899999999999999999999999997743 23455678899999999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|||||+.+|++|+||||.|+||..-+.++...++++.+ .|.|.|++|||.. +...++|||.+|++|++...|+|+++
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~ei- 224 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEI- 224 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHH-
Confidence 99999999999999999999999999999999999986 6999999999976 68999999999999999999999987
Q ss_pred hHHhhcCCCCCCCCCchhHHHH
Q psy12625 258 PYLSDFGYQCPSNYNPADYVIE 279 (612)
Q Consensus 258 ~~f~~~g~~~p~~~~~ad~~~~ 279 (612)
|..|.+.-.|||+-+
T Consensus 225 -------Y~~P~~~fVA~FiG~ 239 (352)
T COG3842 225 -------YERPATRFVADFIGE 239 (352)
T ss_pred -------hhCcchHHHHHHhCc
Confidence 334555556666654
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.1e-51 Score=420.27 Aligned_cols=223 Identities=31% Similarity=0.453 Sum_probs=203.6
Q ss_pred eEEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 20 NLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
.++++||++.| + ++.+|+||||++++||++|++||||||||||+|+|+|+.+| ++|+|.++|.+
T Consensus 4 ~i~~~~l~k~~----------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-----~~G~i~i~G~~ 68 (293)
T COG1131 4 VIEVRNLTKKY----------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-----TSGEILVLGYD 68 (293)
T ss_pred eeeecceEEEe----------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-----CceEEEEcCEe
Confidence 57889999988 5 58899999999999999999999999999999999999986 68999999988
Q ss_pred ccc-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 99 LQD-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 99 ~~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
... ....++.+||++|++.+++.+||+||+.|.+.++... ....+++++++++.+||.+..++++++||+|||||+
T Consensus 69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl 145 (293)
T COG1131 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRL 145 (293)
T ss_pred CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHH
Confidence 644 3567889999999999999999999999999887432 245677899999999999977899999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
+||+||+.+|+++||||||+||||.++.++.+.|++++++| +||+++||++. ++..+||+|++|++|++++.|+++++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999977 89999999986 68899999999999999999988887
Q ss_pred hhHHh
Q psy12625 257 VPYLS 261 (612)
Q Consensus 257 ~~~f~ 261 (612)
...+.
T Consensus 225 ~~~~~ 229 (293)
T COG1131 225 KEKFG 229 (293)
T ss_pred HHhhc
Confidence 66543
No 19
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-51 Score=392.16 Aligned_cols=226 Identities=28% Similarity=0.385 Sum_probs=200.7
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.|+ +++++|+|||++|++||+++|+||||||||||||+|+|+.+| .+|+|.+||.+
T Consensus 2 ~~i~~~nl~k~yp---------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~-----t~G~i~~~g~~ 67 (258)
T COG3638 2 MMIEVKNLSKTYP---------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-----TSGEILFNGVQ 67 (258)
T ss_pred ceEEEeeeeeecC---------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC-----CcceEEecccc
Confidence 4799999999984 568899999999999999999999999999999999999886 68999999987
Q ss_pred ccch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHHcCCccccCcccCC
Q psy12625 99 LQDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-----NQYSRKAKESKVDSIADSLSISTCKNTLTKH 168 (612)
Q Consensus 99 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~ 168 (612)
+... +.+|+++||++|++++.+.+||.+|+..+..-+.+ -.+..++.+.++-+.|+++|+.+.+.++.++
T Consensus 68 i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~ 147 (258)
T COG3638 68 ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAST 147 (258)
T ss_pred hhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhcc
Confidence 6432 45789999999999999999999999876422211 1222345567788999999999999999999
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|||||+|||+|||||+.+|+|++.|||+++|||.+++++|+.|+++++ +|.|||++.||.+ -+.++|||++-|++|++
T Consensus 148 LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~i 226 (258)
T COG3638 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRI 226 (258)
T ss_pred CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecCCcE
Confidence 999999999999999999999999999999999999999999999987 7999999999986 57899999999999999
Q ss_pred EEecCccChhhH
Q psy12625 248 TYQGTVPGLVPY 259 (612)
Q Consensus 248 v~~G~~~~~~~~ 259 (612)
+|+|+++++.+.
T Consensus 227 vfDg~~~el~~~ 238 (258)
T COG3638 227 VFDGPASELTDE 238 (258)
T ss_pred EEeCChhhhhHH
Confidence 999999987554
No 20
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-50 Score=396.28 Aligned_cols=204 Identities=26% Similarity=0.433 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++++++++.| +...+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~i~~v~~~f----------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p-----~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSF----------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP-----TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEe----------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCccc
Confidence 58899999988 558899999999999999999999999999999999999987 689999999986
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.. -...++||+|++.++|.+||+||+.++...+. .++++.+++++++++.+||.+..|+++++|||||||||+|
T Consensus 68 ~~---p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVai 141 (248)
T COG1116 68 TG---PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAI 141 (248)
T ss_pred CC---CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHH
Confidence 32 35679999999999999999999999877652 4566677899999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
||||+.+|++|+||||+++||..++.++.+.|.++.+ +++||+++|||.. +...++|||++|+++
T Consensus 142 ARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 142 ARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 9999999999999999999999999999999999976 6899999999986 678899999999984
No 21
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-50 Score=397.14 Aligned_cols=220 Identities=25% Similarity=0.427 Sum_probs=191.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.| +.+++|+|||+++++|++++|+||||||||||+|+|.|+++| .+|+|.++|++
T Consensus 3 ~~i~v~nl~v~y----------~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p-----~~G~i~~~g~~ 67 (254)
T COG1121 3 PMIEVENLTVSY----------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP-----SSGEIKIFGKP 67 (254)
T ss_pred cEEEEeeeEEEE----------CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CcceEEEcccc
Confidence 468999999998 333699999999999999999999999999999999999987 68999999988
Q ss_pred ccchHhhccceEEEccCC---CCCCCCCHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625 99 LQDHRMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKLG--NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 173 (612)
....+ -+.+||||||.. .-|| +||+|.+.++...+.+ ...+ +.+++.++++|+.+|+.+.+|+.+++|||||
T Consensus 68 ~~~~~-~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ 144 (254)
T COG1121 68 VRKRR-KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIGELSGGQ 144 (254)
T ss_pred ccccc-cCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCcccccCcHH
Confidence 54322 246899999954 2344 8999999887433321 1223 3447889999999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
+|||-|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||+. .+.++||+|+.|+ +++++.|++
T Consensus 145 ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~ 222 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASGPP 222 (254)
T ss_pred HHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEeccCh
Confidence 99999999999999999999999999999999999999999999999999999987 6899999999996 568899999
Q ss_pred cChhh
Q psy12625 254 PGLVP 258 (612)
Q Consensus 254 ~~~~~ 258 (612)
+++.+
T Consensus 223 ~~~~~ 227 (254)
T COG1121 223 EEVLT 227 (254)
T ss_pred hhccC
Confidence 98765
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-50 Score=400.53 Aligned_cols=223 Identities=26% Similarity=0.426 Sum_probs=202.3
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
++|+++|+++.+ +...+++|||++|+.||++|++|||||||||||++|||++.| ++|.|.+||+.
T Consensus 1 m~i~i~~~~~~~----------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p-----~~G~I~~~~~~ 65 (345)
T COG1118 1 MSIRINNVKKRF----------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-----DAGRIRLNGRV 65 (345)
T ss_pred Cceeehhhhhhc----------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC-----CCceEEECCEe
Confidence 367888888877 667899999999999999999999999999999999999987 68999999994
Q ss_pred c---cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 99 L---QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 99 ~---~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
+ .+.....++||||+|+..+|+.|||.||+.|+...+ ....++.+.+.+++++|+.+.|++..++++.+|||||||
T Consensus 66 l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQ 144 (345)
T COG1118 66 LFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQ 144 (345)
T ss_pred ccchhccchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHH
Confidence 3 332334578999999999999999999999998776 233456778899999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
||++||||+.+|++|+||||+++||..-+.++.+.|+++.++ |.|++++|||+. +++++||||++|++|+|...|+++
T Consensus 145 RVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ 223 (345)
T COG1118 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPD 223 (345)
T ss_pred HHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHH
Confidence 999999999999999999999999999999999999999874 999999999976 789999999999999999999999
Q ss_pred Chhh
Q psy12625 255 GLVP 258 (612)
Q Consensus 255 ~~~~ 258 (612)
++.+
T Consensus 224 ev~~ 227 (345)
T COG1118 224 EVYD 227 (345)
T ss_pred HHhc
Confidence 8743
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=8.8e-50 Score=371.54 Aligned_cols=216 Identities=25% Similarity=0.395 Sum_probs=197.6
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+|+||++.|.. + +++|+|||+++++||++-|+||||||||||||+|.+..+| ++|+|.+||+++
T Consensus 1 mI~f~~V~k~Y~~--------g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-----t~G~i~~~~~dl 66 (223)
T COG2884 1 MIRFENVSKAYPG--------G-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP-----TRGKILVNGHDL 66 (223)
T ss_pred CeeehhhhhhcCC--------C-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC-----CCceEEECCeec
Confidence 4789999999842 4 7799999999999999999999999999999999999886 689999999997
Q ss_pred cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
... ..+|++||+|+||..+.+..||+||+.|+.+.. ..++++.++++.++|+.+||.+.++..+.+||||||
T Consensus 67 ~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQ 143 (223)
T COG2884 67 SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQ 143 (223)
T ss_pred ccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHH
Confidence 542 457899999999999999999999999988765 456778899999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
|||+||||++.+|++|+.||||-+|||..+.+|++++.++.+.|+||+++|||.. -+.++-.|++.|++|+++.....
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999964 56777789999999999876543
No 24
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-49 Score=376.50 Aligned_cols=237 Identities=22% Similarity=0.322 Sum_probs=207.7
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...++++||++.| +++++|+|||+.|++++++|+|||||||||||||++..+.....+...+|+|.++|+
T Consensus 5 ~~~~~~~~l~~yY----------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ 74 (253)
T COG1117 5 IPAIEVRDLNLYY----------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGK 74 (253)
T ss_pred cceeEecceeEEE----------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCe
Confidence 3468899999988 789999999999999999999999999999999999998765545568999999999
Q ss_pred eccch----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCC
Q psy12625 98 RLQDH----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHL 169 (612)
Q Consensus 98 ~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~L 169 (612)
++.+. ..+|+++|+|+|.|+.|| +|++||+.++.++.. ..+++.++.|++.|+...|. +..++...+|
T Consensus 75 ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~L 150 (253)
T COG1117 75 NIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLHKSALGL 150 (253)
T ss_pred eccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCC
Confidence 98543 468999999999999999 999999999987752 22366778899999988874 3445667789
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||++|||||+.+|+||+||||||+|||.+..+|.+++.+|+ +.-|||++||.+. ...+..|+..++..|++++
T Consensus 151 SGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYLGELVE 228 (253)
T ss_pred ChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcccEEEE
Confidence 9999999999999999999999999999999999999999999998 4689999999986 6789999999999999999
Q ss_pred ecCccChhhHHhhcCCCCCCCCCchhHHH
Q psy12625 250 QGTVPGLVPYLSDFGYQCPSNYNPADYVI 278 (612)
Q Consensus 250 ~G~~~~~~~~f~~~g~~~p~~~~~ad~~~ 278 (612)
+|+.+++ |..|.+..+.||+.
T Consensus 229 ~g~T~~i--------F~~P~~~~TedYis 249 (253)
T COG1117 229 FGPTDKI--------FTNPKHKRTEDYIS 249 (253)
T ss_pred EcCHHhh--------hcCccHHHHHHHhc
Confidence 9999877 45677777777763
No 25
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-50 Score=375.73 Aligned_cols=221 Identities=26% Similarity=0.406 Sum_probs=203.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|++.+++++|+. ..++++||||+++.||+++|+|||||||||+||+|++++.| ++|.|+++|.+.
T Consensus 1 Ml~v~~l~K~y~~---------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-----~~G~v~idg~d~ 66 (245)
T COG4555 1 MLEVTDLTKSYGS---------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP-----DSGKVTIDGVDT 66 (245)
T ss_pred CeeeeehhhhccC---------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC-----CCceEEEeeccc
Confidence 4788899988821 23499999999999999999999999999999999999997 689999999886
Q ss_pred c-chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 100 Q-DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 100 ~-~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
. ++...|++||.++.+..++..||++|||.|.+++. ++++.+.+++++++.+.++|.++.|++++++|-|+||||+
T Consensus 67 ~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~ 143 (245)
T COG4555 67 VRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVA 143 (245)
T ss_pred ccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHH
Confidence 4 34667999999998889999999999999998875 4667788899999999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 258 (612)
|||||+.+|++++|||||||||..+...+.+.+++++++|++||+++|... ++..+||+|++|++|++++.|+++++..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999976 7889999999999999999999987654
No 26
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.4e-48 Score=404.36 Aligned_cols=221 Identities=28% Similarity=0.373 Sum_probs=199.3
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++++||++.| +++.+|+|||+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~----------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p-----~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRY----------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP-----DAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEE----------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEe
Confidence 369999999988 457799999999999999999999999999999999999986 68999999998
Q ss_pred ccch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 99 LQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 99 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
+... ...++.+||++|++.+++.+||+||+.+.+.++ ..+..+.+++++++++.+||.+..++++++||||||||+
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 147 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRL 147 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHH
Confidence 7432 346788999999999999999999999866543 233444566789999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999888999999999986 688999999999999999999988765
Q ss_pred h
Q psy12625 258 P 258 (612)
Q Consensus 258 ~ 258 (612)
.
T Consensus 227 ~ 227 (306)
T PRK13537 227 E 227 (306)
T ss_pred h
Confidence 4
No 27
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.4e-48 Score=410.91 Aligned_cols=219 Identities=27% Similarity=0.403 Sum_probs=199.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p-----~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRF----------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-----TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEe----------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-----CceEEEECCEEC
Confidence 58999999988 456799999999999999999999999999999999999886 689999999987
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.+....++.+|||+|++.+||.+||+||+.|+...+ ..++.+.+++++++++.+||++..++++.+|||||||||+|
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVAL 145 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHH
Confidence 554445678999999999999999999999986543 34456677889999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||||+.+|++++||||||+||+.++.++.+.|+++.++ |.|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999874 999999999986 688999999999999999999998764
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-48 Score=411.07 Aligned_cols=220 Identities=23% Similarity=0.369 Sum_probs=198.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++|. +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~i~~l~~~~~---------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p-----~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD---------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI-----TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC---------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-----CceEEEECCEEC
Confidence 589999999872 246799999999999999999999999999999999999886 689999999987
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.+....++.+|||+|++.+||.+||+||+.|+...+ ..++.+.+++++++++.+||++..++++.+|||||||||+|
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRval 145 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAM 145 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHH
Confidence 554344578999999999999999999999986542 23455666789999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||||+.+|++|+||||||+||+.++..+.+.|+++.++ |+|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999874 999999999976 689999999999999999999998763
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-48 Score=409.43 Aligned_cols=220 Identities=20% Similarity=0.415 Sum_probs=200.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++
T Consensus 5 ~~l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----~~G~I~~~g~~ 69 (351)
T PRK11432 5 NFVVLKNITKRF----------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP-----TEGQIFIDGED 69 (351)
T ss_pred cEEEEEeEEEEE----------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-----CceEEEECCEE
Confidence 379999999988 456799999999999999999999999999999999999986 68999999998
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
+.+....++.+|||+|++.+||.+||+||+.|+...+ ..++.+.+++++++++.+||.+..++++.+|||||||||+
T Consensus 70 i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVa 146 (351)
T PRK11432 70 VTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVA 146 (351)
T ss_pred CCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 7654445678999999999999999999999986543 2445666788999999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 147 LARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 147 LARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999874 899999999986 688999999999999999999998763
No 30
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.6e-48 Score=407.40 Aligned_cols=223 Identities=24% Similarity=0.371 Sum_probs=197.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++||++.|.. +.+.+++|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++
T Consensus 1 mI~~~~lsk~y~~------~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p-----~~G~I~i~G~~i 69 (343)
T TIGR02314 1 MIKLSNITKVFHQ------GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----TSGSVIVDGQDL 69 (343)
T ss_pred CEEEEEEEEEECC------CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence 3789999999831 11235799999999999999999999999999999999999986 689999999987
Q ss_pred cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
... ...++.+||++|++.+++.+||+||+.++.... ..++++.++++.++++.+||.+..|+++.+||||||
T Consensus 70 ~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqk 146 (343)
T TIGR02314 70 TTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQK 146 (343)
T ss_pred CcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 532 234778999999999999999999999876532 234556677899999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
|||+|||||+++|++|+||||||+||+.++..++++|++++++ |.|||++||++. .+.++||++++|++|++++.|++
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999874 999999999976 67899999999999999999998
Q ss_pred cChh
Q psy12625 254 PGLV 257 (612)
Q Consensus 254 ~~~~ 257 (612)
+++.
T Consensus 226 ~~v~ 229 (343)
T TIGR02314 226 SEIF 229 (343)
T ss_pred HHHH
Confidence 7663
No 31
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-48 Score=376.50 Aligned_cols=223 Identities=25% Similarity=0.366 Sum_probs=195.0
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.|.. +....++|+|||+++.+||.++|+|+||||||||.++|+|+.+| .+|+|.++|++
T Consensus 2 ~~l~v~nl~~~y~~------~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-----~~G~I~~~G~~ 70 (252)
T COG1124 2 TLLSVRNLSIVYGG------GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-----SSGSILLDGKP 70 (252)
T ss_pred ceEEEeceEEEecC------CcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCcc
Confidence 46899999999843 11123699999999999999999999999999999999999986 68999999987
Q ss_pred ccch---HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChh
Q psy12625 99 LQDH---RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGG 172 (612)
Q Consensus 99 ~~~~---~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgG 172 (612)
.... +.+++.+.+||||+ .+.|..||++.+.-+.+.. +.++ .++++.++++.+||.+ .+++++.+||||
T Consensus 71 ~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGG 145 (252)
T COG1124 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGG 145 (252)
T ss_pred cCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccH--HHHHHHHHHHHcCCCHHHHhcCchhcChh
Confidence 5432 35678999999997 5889999999998775542 2333 3345999999999975 689999999999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
||||++|||||+.+|++||||||||+||+..+.+|+++|.++++ .+.|.|+++||.. .+..+|||+++|++|++++.+
T Consensus 146 Q~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 146 QRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred HHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEee
Confidence 99999999999999999999999999999999999999999987 5889999999976 689999999999999999999
Q ss_pred CccChhh
Q psy12625 252 TVPGLVP 258 (612)
Q Consensus 252 ~~~~~~~ 258 (612)
+.+++.+
T Consensus 225 ~~~~l~~ 231 (252)
T COG1124 225 PTEELLS 231 (252)
T ss_pred chhhhhc
Confidence 9988765
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6.3e-48 Score=409.51 Aligned_cols=219 Identities=23% Similarity=0.397 Sum_probs=198.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCce--eEEEECCE
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS--GYIEINET 97 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~--G~I~~~g~ 97 (612)
.|+++||+++| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+ |+|.++|+
T Consensus 5 ~l~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAY----------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA-----AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEE----------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCCEEEEECCE
Confidence 58899999988 446799999999999999999999999999999999999986 56 99999999
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
++.+....++.++||+|++.++|.+||+||+.|+...+ ..++.+.+++++++++.+||++..++++++|||||||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRv 146 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRI 146 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHH
Confidence 87543345678999999999999999999999986543 244556677899999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
+|||||+.+|++|+|||||+|||+..+.++.+.|++++++ |+|+|++|||+. ++..++|+|++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999875 899999999976 6889999999999999999999987
Q ss_pred hh
Q psy12625 256 LV 257 (612)
Q Consensus 256 ~~ 257 (612)
+.
T Consensus 226 ~~ 227 (362)
T TIGR03258 226 LY 227 (362)
T ss_pred HH
Confidence 64
No 33
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-47 Score=386.46 Aligned_cols=218 Identities=28% Similarity=0.422 Sum_probs=192.4
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSF----------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-----DSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcc
Confidence 4689999987 446799999999999999999999999999999999999886 6899999998864
Q ss_pred ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
.. ..+++.++|++|++.+++.+||+||+.+...... ..++++.+++++++++.+||.+..++++++|||||||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 143 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKK 143 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 32 3456789999999999999999999988643221 2234455677899999999999899999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
||+|||||+.+|++++|||||+|||+.++..+++.|+++++ .|+|||+++||+. .+.++||++++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHH
Confidence 99999999999999999999999999999999999999987 4899999999986 578899999999999999999876
Q ss_pred Ch
Q psy12625 255 GL 256 (612)
Q Consensus 255 ~~ 256 (612)
++
T Consensus 223 ~~ 224 (235)
T cd03261 223 EL 224 (235)
T ss_pred HH
Confidence 54
No 34
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.3e-47 Score=408.70 Aligned_cols=220 Identities=23% Similarity=0.394 Sum_probs=199.2
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.| +++++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|++
T Consensus 13 ~~L~l~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p-----~~G~I~~~g~~ 77 (375)
T PRK09452 13 PLVELRGISKSF----------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-----DSGRIMLDGQD 77 (375)
T ss_pred ceEEEEEEEEEE----------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEECCEE
Confidence 369999999988 456799999999999999999999999999999999999986 68999999998
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
+.+....++.++||+|++.+||.+||+||+.|+...+ +.++.+.+++++++++.+||++..++++.+|||||||||+
T Consensus 78 i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVa 154 (375)
T PRK09452 78 ITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVA 154 (375)
T ss_pred CCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 7544444678999999999999999999999986533 2345556678999999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|||||+.+|++|+|||||||||+..+..+.+.|+++++ .|+|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus 155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999987 4999999999976 688999999999999999999988763
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.7e-47 Score=405.56 Aligned_cols=223 Identities=26% Similarity=0.395 Sum_probs=198.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
+.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++
T Consensus 1 ~~L~i~~l~~~~----------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----~~G~I~i~g~~ 65 (353)
T PRK10851 1 MSIEIANIKKSF----------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ-----TSGHIRFHGTD 65 (353)
T ss_pred CEEEEEEEEEEe----------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEE
Confidence 358899999988 456799999999999999999999999999999999999886 68999999998
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
+.+....++.++||+|++.++|.+||+||+.++...... ...++++.+++++++++.+||.+..++++.+|||||||||
T Consensus 66 i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRv 145 (353)
T PRK10851 66 VSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRV 145 (353)
T ss_pred CCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 754334467899999999999999999999987653211 1234455677899999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++|||+. ++.++||++++|++|++++.|+++++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999875 899999999986 68899999999999999999998876
Q ss_pred h
Q psy12625 257 V 257 (612)
Q Consensus 257 ~ 257 (612)
.
T Consensus 225 ~ 225 (353)
T PRK10851 225 W 225 (353)
T ss_pred H
Confidence 4
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.7e-47 Score=400.97 Aligned_cols=222 Identities=27% Similarity=0.380 Sum_probs=199.4
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|+
T Consensus 39 ~~~i~i~nl~k~y----------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p-----~~G~i~i~G~ 103 (340)
T PRK13536 39 TVAIDLAGVSKSY----------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP-----DAGKITVLGV 103 (340)
T ss_pred ceeEEEEEEEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CceEEEECCE
Confidence 3469999999998 556799999999999999999999999999999999999986 6899999999
Q ss_pred eccch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 98 RLQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 98 ~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
++... ...++.+||++|++.+++.+||+||+.+..... ..+..+.+++++++++.+||.+..++++++||||||||
T Consensus 104 ~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqr 180 (340)
T PRK13536 104 PVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRR 180 (340)
T ss_pred ECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHH
Confidence 86532 346788999999999999999999999765443 12334455678899999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
++||+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||+.+ ++.++||+|++|++|++++.|+++++
T Consensus 181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999999888999999999986 68899999999999999999999887
Q ss_pred hh
Q psy12625 257 VP 258 (612)
Q Consensus 257 ~~ 258 (612)
..
T Consensus 260 ~~ 261 (340)
T PRK13536 260 ID 261 (340)
T ss_pred Hh
Confidence 54
No 37
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.2e-48 Score=357.53 Aligned_cols=216 Identities=27% Similarity=0.433 Sum_probs=191.8
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|.+++|.++|. ..+ =..+++|++||++||+||||||||||||+|+|+..| .+|+|.+||++..
T Consensus 2 l~L~~V~~~y~----------~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-----~~G~i~i~g~d~t 64 (231)
T COG3840 2 LALDDVRFSYG----------HLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-----ASGEILINGVDHT 64 (231)
T ss_pred ccccceEEeeC----------cce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC-----CCceEEEcCeecC
Confidence 56678888872 222 367889999999999999999999999999999987 6899999999965
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
......|-+++++|+.++|..+||.+|+.++..-.+ +. ..+.+++++.++.++||..+.++.+++|||||||||++|
T Consensus 65 ~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALA 141 (231)
T COG3840 65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALA 141 (231)
T ss_pred cCCcccCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHH
Confidence 545567889999999999999999999988753222 22 245678899999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|+|+++-+||+||||+|+|||.-+.++..++.++++ ++.|++++||+|+ ++.+++|+++++++|+|.++|+.++..
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999999999999999999999999999987 6899999999997 689999999999999999999887654
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-47 Score=377.01 Aligned_cols=212 Identities=30% Similarity=0.450 Sum_probs=187.3
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
++++|+++.| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~~ 65 (213)
T cd03259 1 LELKGLSKTY----------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-----DSGEILIDGRDVT 65 (213)
T ss_pred CeeeeeEEEe----------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEEcC
Confidence 4688999987 346799999999999999999999999999999999999886 6899999999865
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
+....++.++|++|++.+++.+|++||+.+..... .......+++++++++.+|+.+..++++.+||||||||++||
T Consensus 66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 142 (213)
T cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALA 142 (213)
T ss_pred cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence 43334578999999999999999999998865432 123344556788999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. .+.++||++++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999987 5899999999976 578899999999999998765
No 39
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-47 Score=379.34 Aligned_cols=221 Identities=29% Similarity=0.395 Sum_probs=198.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++++|++|.|+. + +.+|+|+|+++++||.++|+||||||||||+++|+|+++| .+|+|.++|.++
T Consensus 3 ~i~~~~l~~~y~~--------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p-----~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG--------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-----TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC--------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC-----CCCEEEECCeec
Confidence 5889999999832 3 6899999999999999999999999999999999999997 579999999986
Q ss_pred cc---hHhhccceEEEccCCCC-CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 100 QD---HRMLRKESCYIMQDNLL-QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 100 ~~---~~~~~~~i~yv~Q~~~l-~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
.. ...+++++|||+|+|.. +-.-||.|.+.|+..-. ..++++.+++++++++.+|+.+.+++.+.+|||||||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkq 145 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQ 145 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCccccCCccee
Confidence 42 35678999999999743 33469999999986432 4566778899999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
||+||.+|+.+|++|+|||||||||+.++.++++.++++.++ |+|+|++|||.. .+..++|++++|++|+++++|+|.
T Consensus 146 RvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~ 224 (235)
T COG1122 146 RVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPA 224 (235)
T ss_pred eHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHH
Confidence 999999999999999999999999999999999999999986 799999999986 688999999999999999999987
Q ss_pred Chhh
Q psy12625 255 GLVP 258 (612)
Q Consensus 255 ~~~~ 258 (612)
++.+
T Consensus 225 ~i~~ 228 (235)
T COG1122 225 EIFN 228 (235)
T ss_pred HHhh
Confidence 6543
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-47 Score=376.75 Aligned_cols=216 Identities=25% Similarity=0.394 Sum_probs=191.4
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.++.
T Consensus 1 i~~~~~~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKY----------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-----TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEE----------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEecC
Confidence 4689999987 446799999999999999999999999999999999999886 6899999998864
Q ss_pred c-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 101 D-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 101 ~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
. ....++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++++++||||||||++|
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~l 142 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEI 142 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHH
Confidence 3 2345678999999999999999999998875442 12334455678999999999998999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
|+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|+++..|++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999999999875 899999999986 6788999999999999999987764
No 41
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-47 Score=403.74 Aligned_cols=221 Identities=22% Similarity=0.367 Sum_probs=199.9
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+
T Consensus 17 ~~~l~l~~v~~~~----------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----~~G~I~i~g~ 81 (377)
T PRK11607 17 TPLLEIRNLTKSF----------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-----TAGQIMLDGV 81 (377)
T ss_pred CceEEEEeEEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEECCE
Confidence 3469999999987 446799999999999999999999999999999999999986 6899999999
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
++.+....++.+|||+|++.+||.+||.||+.|+...+ +.++.+.+++++++++.+||.+..++++.+|||||||||
T Consensus 82 ~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRV 158 (377)
T PRK11607 82 DLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRV 158 (377)
T ss_pred ECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 87554445788999999999999999999999986543 234556677899999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
+|||||+.+|++|+|||||++||...+..+.+.|+++.+ .|.|+|++|||+. ++..++|++++|++|+++..|+++++
T Consensus 159 aLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~ 237 (377)
T PRK11607 159 ALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999876 5899999999976 68899999999999999999999876
Q ss_pred h
Q psy12625 257 V 257 (612)
Q Consensus 257 ~ 257 (612)
.
T Consensus 238 ~ 238 (377)
T PRK11607 238 Y 238 (377)
T ss_pred H
Confidence 4
No 42
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-47 Score=403.87 Aligned_cols=219 Identities=26% Similarity=0.410 Sum_probs=196.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~i~~l~~~~----------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p-----~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAY----------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-----TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEe----------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEECCEEC
Confidence 58999999988 456799999999999999999999999999999999999986 689999999987
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.+....++.++||+|++.+++.+||+||+.+....+ ..++.+.+++++++++.+||++..++++.+|||||||||+|
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaL 144 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAI 144 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH
Confidence 543334578999999999999999999999876543 23345556789999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++|||+. ++.++||++++|++|+++..|+++++.
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999874 899999999976 688999999999999999999988764
No 43
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.7e-47 Score=393.47 Aligned_cols=221 Identities=28% Similarity=0.374 Sum_probs=196.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
+.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 3 ~~i~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----~~G~i~~~g~~ 67 (303)
T TIGR01288 3 VAIDLVGVSKSY----------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP-----DRGKITVLGEP 67 (303)
T ss_pred cEEEEEeEEEEe----------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEE
Confidence 468999999988 456799999999999999999999999999999999999886 68999999998
Q ss_pred ccch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 99 LQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 99 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
+... ...++.+||++|++.+++.+||+||+.+..... ..+..+.+++++++++.+||.+..++++++||||||||+
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv 144 (303)
T TIGR01288 68 VPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRL 144 (303)
T ss_pred CcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHH
Confidence 6432 345778999999999999999999998754432 123344456788999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
+||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999999888999999999986 678899999999999999999988764
Q ss_pred h
Q psy12625 258 P 258 (612)
Q Consensus 258 ~ 258 (612)
.
T Consensus 224 ~ 224 (303)
T TIGR01288 224 D 224 (303)
T ss_pred h
Confidence 3
No 44
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-47 Score=381.20 Aligned_cols=221 Identities=27% Similarity=0.392 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRF----------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-----DSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEE----------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEC
Confidence 58999999988 346799999999999999999999999999999999999886 689999999986
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
......++.++|++|++.+++.+||+||+.+....... ......+.+++++++++.+||.+..++++.+||||||||++
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVA 146 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH
Confidence 43323356799999999999999999999886543210 00122334567889999999999899999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999999874 899999999986 57889999999999999999987654
No 45
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-48 Score=364.64 Aligned_cols=223 Identities=25% Similarity=0.482 Sum_probs=201.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|..+||.++| ++++++++||+++++||+++++|||||||||.+.++.|+.+| ++|+|.+||.+
T Consensus 3 ~~L~a~~l~K~y----------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~-----d~G~i~ld~~d 67 (243)
T COG1137 3 STLVAENLAKSY----------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP-----DSGKILLDDED 67 (243)
T ss_pred cEEEehhhhHhh----------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec-----CCceEEECCcc
Confidence 368889998887 678899999999999999999999999999999999999986 68999999999
Q ss_pred ccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 99 LQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 99 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
+... ...|..+||+||++..|..+||+||+......+.. ...+.+.+.+++++|+++++.|.++++..+|||||||
T Consensus 68 iT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERR 146 (243)
T COG1137 68 ITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERR 146 (243)
T ss_pred cccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHH
Confidence 8653 33466899999999999999999999987766532 1223455667889999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
|+.|||||+.+|+.++||||++|.||.+..+|-++++.|++.|..|++|-|+.. +...+|||.+++++|++..+|+|++
T Consensus 147 R~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~e 225 (243)
T COG1137 147 RVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEE 225 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHH
Confidence 999999999999999999999999999999999999999999999999999987 6889999999999999999999998
Q ss_pred hhh
Q psy12625 256 LVP 258 (612)
Q Consensus 256 ~~~ 258 (612)
+.+
T Consensus 226 i~~ 228 (243)
T COG1137 226 IVN 228 (243)
T ss_pred Hhc
Confidence 754
No 46
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=9e-47 Score=374.88 Aligned_cols=210 Identities=21% Similarity=0.392 Sum_probs=184.8
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|++++|.. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG--------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP-----TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC--------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEehh
Confidence 789999998821 224699999999999999999999999999999999999886 5899999999864
Q ss_pred ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
.. ..+++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+|+.+..++.+.+|||||||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 145 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQ 145 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 31 235678999999999999999999998875432 1233445677899999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++
T Consensus 146 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 146 RVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999878999999999986 57789999999999974
No 47
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.7e-46 Score=372.07 Aligned_cols=212 Identities=25% Similarity=0.436 Sum_probs=187.4
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRF----------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-----TSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEE----------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECC
Confidence 4689999987 446799999999999999999999999999999999999886 6899999999864
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
.....++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+|+++..++++.+||||||||++||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la 142 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALG 142 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHH
Confidence 33233467999999999999999999998865432 223444566788999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++||+. ++.++||++++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999987 4899999999975 678899999999999998875
No 48
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-46 Score=396.21 Aligned_cols=223 Identities=26% Similarity=0.379 Sum_probs=195.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++||+++|.. +.+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 1 mi~i~~l~~~y~~------~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p-----~~G~I~~~g~~i 69 (343)
T PRK11153 1 MIELKNISKVFPQ------GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP-----TSGRVLVDGQDL 69 (343)
T ss_pred CEEEEeEEEEeCC------CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEECCEEC
Confidence 3789999998831 01246799999999999999999999999999999999999986 689999999987
Q ss_pred cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
... ...++.++||+|++.+++.+||+||+.+..... ..++.+.+++++++++.+||.+..++++.+||||||
T Consensus 70 ~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~ 146 (343)
T PRK11153 70 TALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQK 146 (343)
T ss_pred CcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 432 234678999999999999999999999875442 234445567889999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|++++.|++
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999874 899999999986 67889999999999999999988
Q ss_pred cChh
Q psy12625 254 PGLV 257 (612)
Q Consensus 254 ~~~~ 257 (612)
+++.
T Consensus 226 ~~~~ 229 (343)
T PRK11153 226 SEVF 229 (343)
T ss_pred HHHH
Confidence 7653
No 49
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.3e-46 Score=376.91 Aligned_cols=220 Identities=25% Similarity=0.418 Sum_probs=191.2
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~ 65 (236)
T cd03219 1 LEVRGLTKRF----------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-----TSGSVLFDGEDIT 65 (236)
T ss_pred CeeeeeEEEE----------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC-----CCceEEECCEECC
Confidence 4678999887 345799999999999999999999999999999999999886 5899999999864
Q ss_pred ch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCC-------CCHHHHHHHHHHHHHHcCCccccCcccCCCC
Q psy12625 101 DH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQ-------YSRKAKESKVDSIADSLSISTCKNTLTKHLS 170 (612)
Q Consensus 101 ~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS 170 (612)
.. .. .++.++|++|++.+++.+||+||+.+......... ....+..++++++++.+|+++..++++++||
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 145 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELS 145 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCC
Confidence 32 22 34679999999999999999999988754321110 0133445678999999999998999999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|+++..
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999878899999999986 67889999999999999999
Q ss_pred cCccCh
Q psy12625 251 GTVPGL 256 (612)
Q Consensus 251 G~~~~~ 256 (612)
|+++++
T Consensus 225 ~~~~~~ 230 (236)
T cd03219 225 GTPDEV 230 (236)
T ss_pred cCHHHh
Confidence 987654
No 50
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.4e-46 Score=388.89 Aligned_cols=219 Identities=20% Similarity=0.372 Sum_probs=196.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++++|++++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++
T Consensus 2 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-----~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLY----------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP-----DSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEE----------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEc
Confidence 58899999988 456799999999999999999999999999999999999886 689999999986
Q ss_pred cch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 100 QDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 100 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
... ...++.+||++|++.+++.+||.||+.+.+.+. ..+.++.+++++++++.+||.+..++++++||||||||++
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 143 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVG 143 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHH
Confidence 432 345778999999999999999999999876553 2334445667899999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 258 (612)
||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++.|++++...
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999965 799999999986 6889999999999999999999887654
No 51
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.3e-46 Score=371.34 Aligned_cols=216 Identities=25% Similarity=0.413 Sum_probs=188.8
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.|.. +...+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~------~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRD------VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-----DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCC------CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----CCceEEECCEEcc
Confidence 788999998721 00112799999999999999999999999999999999999886 6899999999864
Q ss_pred c-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 101 D-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 101 ~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
. ...+++.++|++|++.+++.+||+||+.+..... ..++.+..++++++++.+|+.+..++.+++||||||||++|
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 147 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAI 147 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHH
Confidence 3 2345678999999999999999999998765432 23344556788999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+++|++++|++|++++.|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999878999999999986 678899999999999998754
No 52
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.1e-46 Score=374.98 Aligned_cols=217 Identities=26% Similarity=0.467 Sum_probs=191.2
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRY----------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-----DSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEe----------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEecc
Confidence 4688999987 446799999999999999999999999999999999999886 6899999999864
Q ss_pred ch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 101 DH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 101 ~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
.. .. .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+++..++.+++||||||||+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 142 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRV 142 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 32 22 3467999999999999999999998864332 123344456788999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|+++..|++++.
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999999999999999999999888999999999986 68899999999999999999987654
No 53
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.9e-46 Score=391.09 Aligned_cols=209 Identities=25% Similarity=0.387 Sum_probs=188.2
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch-HhhccceEEEccCCCCC
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIMQDNLLQ 119 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~Q~~~l~ 119 (612)
+++++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|+++... ...++.+||++|++.++
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP-----TSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 456799999999999999999999999999999999999986 689999999986432 34577899999999999
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCC
Q psy12625 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgL 199 (612)
+.+||+||+.+.+.++ ..+..+.+++++++++.+||.+..++++++|||||||||+||+||+.+|++|+|||||+||
T Consensus 79 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 79 EDLTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9999999999876543 2334445667899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625 200 DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 200 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 258 (612)
|+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++..
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999888999999999986 6888999999999999999999887654
No 54
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.5e-46 Score=371.61 Aligned_cols=218 Identities=29% Similarity=0.433 Sum_probs=190.5
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.|.. +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK--------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-----TSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC--------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEecc
Confidence 468999998721 126799999999999999999999999999999999999886 6899999999864
Q ss_pred ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.. ..+++.++|++|++.+++.+|++||+.+..... ..+..+.+++++++++.+||.+..++.+.+||||||||++|
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 144 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSL 144 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHH
Confidence 32 345678999999999999999999998865443 12333445678999999999988999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999976 589999999986 57789999999999999999987653
No 55
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-46 Score=368.69 Aligned_cols=210 Identities=25% Similarity=0.420 Sum_probs=186.7
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++.+++|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRF----------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-----DSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEE----------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCCchh
Confidence 4689999887 346799999999999999999999999999999999999876 6899999998753
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
. ..++.++|++|++.+++.+|++||+.+....+ ..+..+.+++++++++.+|+++..++++.+||||||||++||
T Consensus 66 ~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 66 I--AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred H--HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHH
Confidence 2 45678999999999999999999998865443 123344566789999999999989999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|
T Consensus 141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999878899999999976 577899999999999998764
No 56
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-47 Score=367.01 Aligned_cols=224 Identities=25% Similarity=0.392 Sum_probs=202.2
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++++||++++ +.-.+++|||+++++||+++|+||||||||||+|+|+|.++| ++|+|.++|++
T Consensus 3 ~lL~v~~l~k~F----------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P-----~~G~v~~~G~~ 67 (250)
T COG0411 3 PLLEVRGLSKRF----------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-----SSGTVIFRGRD 67 (250)
T ss_pred ceeeeccceeec----------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC-----CCceEEECCcc
Confidence 357899999988 888999999999999999999999999999999999999997 68999999999
Q ss_pred ccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhcc--------CC-CCCHHHHHHHHHHHHHHcCCccccCccc
Q psy12625 99 LQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL--------GN-QYSRKAKESKVDSIADSLSISTCKNTLT 166 (612)
Q Consensus 99 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~ 166 (612)
+... +..+..++--||...+|+.|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|++.
T Consensus 68 it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A 147 (250)
T COG0411 68 ITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA 147 (250)
T ss_pred cCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh
Confidence 8643 3456789999999999999999999999865331 11 1124566788999999999999999999
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
++||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|+++++ .|.||+++.||.. .+.++||||++|+.|
T Consensus 148 ~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G 226 (250)
T COG0411 148 GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYG 226 (250)
T ss_pred hcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCC
Confidence 99999999999999999999999999999999999999999999999998 5799999999987 689999999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
+++.+|+|+++.+
T Consensus 227 ~~IAeG~P~eV~~ 239 (250)
T COG0411 227 EVIAEGTPEEVRN 239 (250)
T ss_pred cCcccCCHHHHhc
Confidence 9999999998754
No 57
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-46 Score=374.55 Aligned_cols=221 Identities=27% Similarity=0.381 Sum_probs=191.9
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.|.. +.+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 i~~~~l~~~~~~------~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGD------TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-----TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccC------CCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEcc
Confidence 788999998721 00113799999999999999999999999999999999999986 6899999999864
Q ss_pred ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
.. ...++.++|++|++.+++.+|++||+.+....+ ........+.++++++.+||.+..++.+.+|||||||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 147 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQ 147 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHH
Confidence 32 124678999999999999999999998865432 1233444567899999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++.|+++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999875 899999999976 678899999999999999999876
Q ss_pred Ch
Q psy12625 255 GL 256 (612)
Q Consensus 255 ~~ 256 (612)
++
T Consensus 227 ~~ 228 (233)
T cd03258 227 EV 228 (233)
T ss_pred HH
Confidence 54
No 58
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.3e-46 Score=372.85 Aligned_cols=220 Identities=22% Similarity=0.321 Sum_probs=187.0
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++....+.+|+|.++|+++.
T Consensus 1 i~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 70 (227)
T cd03260 1 IELRDLNVYY----------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70 (227)
T ss_pred CEEEEEEEEc----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhh
Confidence 4689999887 446799999999999999999999999999999999999811000136899999999864
Q ss_pred c----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc--cCCCChhhh
Q psy12625 101 D----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL--TKHLSGGQK 174 (612)
Q Consensus 101 ~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~--~~~LSgGer 174 (612)
. ...+++.++|++|++.++ .+||+||+.+...... ...+.+.+++++++++.+|+.+..+++ +.+||||||
T Consensus 71 ~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 147 (227)
T cd03260 71 DLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQ 147 (227)
T ss_pred hcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHH
Confidence 3 234567899999999888 7999999988654321 112223456788999999999877777 599999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ +|||++|||+. .+.+.||++++|++|++++.|+++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCcc
Confidence 9999999999999999999999999999999999999999877 99999999986 578899999999999999999876
Q ss_pred C
Q psy12625 255 G 255 (612)
Q Consensus 255 ~ 255 (612)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 5
No 59
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-46 Score=370.09 Aligned_cols=216 Identities=26% Similarity=0.420 Sum_probs=187.7
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.|.. ..+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~~------~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~ 69 (220)
T cd03293 1 LEVRNVSKTYGG------GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-----TSGEVLVDGEPVT 69 (220)
T ss_pred CeEEEEEEEcCC------CCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECc
Confidence 468999998721 01116799999999999999999999999999999999999876 5899999999864
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
. .++.++|++|++.+++.+|++||+.+....+ ..+.+...++++++++.+||.+..++++++||||||||++||
T Consensus 70 ~---~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 143 (220)
T cd03293 70 G---PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALA 143 (220)
T ss_pred c---ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHH
Confidence 2 4578999999999999999999998875432 123344456789999999999989999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec--CCeEEEecCcc
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT--EGYCTYQGTVP 254 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 254 (612)
|||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++.+.||++++|+ +|+++..++.+
T Consensus 144 ~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 144 RALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999999999965 5899999999986 5788999999999 79999887653
No 60
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-46 Score=384.30 Aligned_cols=243 Identities=24% Similarity=0.356 Sum_probs=203.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++|+++.|.. .+...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 1 mi~~~~v~~~y~~-----~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i 70 (288)
T PRK13643 1 MIKFEKVNYTYQP-----NSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-----TEGKVTVGDIVV 70 (288)
T ss_pred CEEEEEEEEEeCC-----CCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence 3789999999831 000124699999999999999999999999999999999999986 689999999986
Q ss_pred cc------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625 100 QD------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS 170 (612)
Q Consensus 100 ~~------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 170 (612)
.. ....++.+|||+|++ .+++ .||.||+.|+.... ..++.+.++++.++++.+||. +..++.+.+||
T Consensus 71 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 146 (288)
T PRK13643 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELS 146 (288)
T ss_pred ccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcccCC
Confidence 31 134678899999986 4555 69999999875432 234555677889999999996 57799999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||+|++|++|++++.
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISC 225 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999985 57789999999999999999
Q ss_pred cCccChhh---HHhhcCCCCCCCCCchhHH
Q psy12625 251 GTVPGLVP---YLSDFGYQCPSNYNPADYV 277 (612)
Q Consensus 251 G~~~~~~~---~f~~~g~~~p~~~~~ad~~ 277 (612)
|++++... .+...|+.+|.....++.+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 226 GTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred CCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99987643 3556777776655444433
No 61
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-46 Score=376.39 Aligned_cols=220 Identities=28% Similarity=0.420 Sum_probs=189.6
Q ss_pred EEEEeEEEEEEeeccccccccc-cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 21 LLFQDISYSALYYDTHSYSIKS-KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
|+++||+++| ++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 1 l~~~~l~~~~----------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~ 65 (241)
T cd03256 1 IEVENLSKTY----------PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-----TSGSVLIDGTDI 65 (241)
T ss_pred CEEeeEEEec----------CCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----CCceEEECCEec
Confidence 4678999887 33 6799999999999999999999999999999999999876 589999999986
Q ss_pred cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhcc---C--CCCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625 100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL---G--NQYSRKAKESKVDSIADSLSISTCKNTLTKHL 169 (612)
Q Consensus 100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~---~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L 169 (612)
... ...++.++|++|++.+++.+||+||+.+...... . ........+++++++++.+||.+..++.+.+|
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 145 (241)
T cd03256 66 NKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQL 145 (241)
T ss_pred cccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccC
Confidence 432 2356789999999999999999999987532110 0 01112334567889999999998899999999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ .+.++||++++|++|+++
T Consensus 146 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIV 224 (241)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 4899999999986 577899999999999999
Q ss_pred EecCccCh
Q psy12625 249 YQGTVPGL 256 (612)
Q Consensus 249 ~~G~~~~~ 256 (612)
+.|++++.
T Consensus 225 ~~~~~~~~ 232 (241)
T cd03256 225 FDGPPAEL 232 (241)
T ss_pred eecCHHHh
Confidence 99988765
No 62
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=382.59 Aligned_cols=224 Identities=25% Similarity=0.380 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|... ....+.+|+|||+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~y~~~-----~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEG-----TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-----TSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCC-----CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEECCEEC
Confidence 48899999988310 00125799999999999999999999999999999999999986 689999999987
Q ss_pred cch----HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc--cccCcccCCCChh
Q psy12625 100 QDH----RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS--TCKNTLTKHLSGG 172 (612)
Q Consensus 100 ~~~----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~~~~LSgG 172 (612)
... ...++.+|||+|++. .+...||+||+.+..... ..++++.+++++++++.+||. +..++++.+||||
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgG 148 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGG 148 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHH
Confidence 431 345788999999873 233579999999865432 244556667899999999997 6789999999999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||+. ++.++||++++|++|++++.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999874 999999999975 577899999999999999999
Q ss_pred CccChh
Q psy12625 252 TVPGLV 257 (612)
Q Consensus 252 ~~~~~~ 257 (612)
+++++.
T Consensus 228 ~~~~~~ 233 (287)
T PRK13637 228 TPREVF 233 (287)
T ss_pred CHHHHH
Confidence 988764
No 63
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4e-46 Score=368.13 Aligned_cols=208 Identities=29% Similarity=0.437 Sum_probs=185.0
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTY----------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-----DSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEE----------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----CceEEEECCCccc
Confidence 4689999987 346799999999999999999999999999999999999886 6899999998764
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
.....++.++|++|++.+++.+||+||+.+..... .. .+++++++++.+|+.+..++++++|||||||||+||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 138 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIA 138 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHH
Confidence 33345678999999999999999999998865432 11 245678899999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++||+. .+.+++|++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999888899999999986 577899999999999998765
No 64
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.1e-46 Score=398.66 Aligned_cols=222 Identities=20% Similarity=0.339 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|+++
T Consensus 3 ~L~~~nls~~y----------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p-----~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEF----------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-----TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEE----------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-----CCcEEEECCEEc
Confidence 58999999988 457899999999999999999999999999999999999986 689999999987
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
.. ...+++.+|||+|++.+++.+||+||+.++....... ....+..+++++++++.+|+.+..++++.+||||||||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQR 147 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQR 147 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 54 2456788999999999989999999998864221100 11123456788999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
++|||||+.+|++|+|||||+|||+.++.+++++|++++++|+|||+++||++ ++.++|||+++|++|++++.|+++++
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999888899999999986 67899999999999999999999875
Q ss_pred h
Q psy12625 257 V 257 (612)
Q Consensus 257 ~ 257 (612)
.
T Consensus 227 ~ 227 (402)
T PRK09536 227 L 227 (402)
T ss_pred h
Confidence 3
No 65
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-45 Score=373.21 Aligned_cols=218 Identities=25% Similarity=0.399 Sum_probs=192.3
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHF----------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-----TSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEE----------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECC
Confidence 7899999987 346799999999999999999999999999999999999886 6899999999864
Q ss_pred ch----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 101 DH----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 101 ~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
.. ..+++.++|++|++.+++.+||+||+.+...... ...+.+.++++.++++.+||++..++++.+||||||||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 144 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQR 144 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHH
Confidence 31 3456789999999999999999999987642111 22344456678999999999988899999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999878999999999986 57789999999999999999987754
No 66
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.6e-46 Score=393.72 Aligned_cols=208 Identities=22% Similarity=0.351 Sum_probs=188.9
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--Hhh----ccceEEEcc
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RML----RKESCYIMQ 114 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~----~~~i~yv~Q 114 (612)
+++.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++... ..+ ++.++||+|
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p-----~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP-----TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC-----CceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 567799999999999999999999999999999999999986 689999999997542 233 678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeC
Q psy12625 115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194 (612)
Q Consensus 115 ~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDE 194 (612)
++.+++.+||+||+.+..... ..++++.++++.++++.+||++..++++++|||||||||+|||||+.+|++|||||
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999999999876543 24455667889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 195 PTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 195 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||++||+.++..+.+.++++.+ .|+|||++|||.. ++.++||++++|++|+++..|+++++.
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999976 4899999999976 678999999999999999999988764
No 67
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-45 Score=378.44 Aligned_cols=219 Identities=26% Similarity=0.347 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~---------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK---------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-----QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC---------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence 589999999872 135699999999999999999999999999999999999986 689999999986
Q ss_pred cch--HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QDH--RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~~--~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
... ...++.++|++|++. .+...||.||+.+..... ..++.+.+++++++++.+||.+..++++.+||||||||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qr 146 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKR 146 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHH
Confidence 432 345678999999973 345689999998864322 23344556678999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
++|||||+.+|++|+|||||+|||+.++.++.+.|++++++|+|||++||+++ .+.++||++++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999999878999999999976 57789999999999999999998643
No 68
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.3e-45 Score=374.69 Aligned_cols=219 Identities=24% Similarity=0.385 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~ 67 (250)
T PRK11264 3 AIEVKNLVKKF----------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-----EAGTIRVGDITI 67 (250)
T ss_pred cEEEeceEEEE----------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCEEc
Confidence 58999999987 345799999999999999999999999999999999999876 689999999886
Q ss_pred cch----------HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625 100 QDH----------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL 169 (612)
Q Consensus 100 ~~~----------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L 169 (612)
... ...++.++|++|++.+++.+||+||+.++..... .......+++++++++.+||.+..++.+++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 145 (250)
T PRK11264 68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPRRL 145 (250)
T ss_pred cccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChhhC
Confidence 421 2346789999999999999999999987543211 1233445567889999999998889999999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.++||++++|++|++++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999976 5778999999999999999
Q ss_pred ecCccCh
Q psy12625 250 QGTVPGL 256 (612)
Q Consensus 250 ~G~~~~~ 256 (612)
.|++++.
T Consensus 225 ~~~~~~~ 231 (250)
T PRK11264 225 QGPAKAL 231 (250)
T ss_pred eCCHHHH
Confidence 9987654
No 69
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=7.8e-46 Score=368.61 Aligned_cols=211 Identities=29% Similarity=0.456 Sum_probs=181.5
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||++.|.. ..+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~~------~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGG------GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-----TSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecC------CCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC-----CceeEEECCEehh
Confidence 468999998721 00116799999999999999999999999999999999999886 6899999999864
Q ss_pred chH-----h-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 101 DHR-----M-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 101 ~~~-----~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
... . .++.++|++|++.+++.+||+||+.+....+ .......+++++++++.+||++..++.+++||||||
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 146 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQ 146 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHH
Confidence 311 1 3467999999999999999999999875433 122334456789999999999989999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. .+. .||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999987 6899999999986 454 9999999999974
No 70
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.4e-45 Score=378.43 Aligned_cols=220 Identities=23% Similarity=0.382 Sum_probs=192.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|++
T Consensus 6 ~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~ 70 (269)
T PRK11831 6 NLVDMRGVSFTR----------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP-----DHGEILFDGEN 70 (269)
T ss_pred ceEEEeCeEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEE
Confidence 369999999987 456799999999999999999999999999999999999886 68999999988
Q ss_pred ccch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625 99 LQDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 99 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 173 (612)
+... ...++.++|++|++.+++.+||.||+.+...... ..+....++++.++++.+||.+..++.+++|||||
T Consensus 71 i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 148 (269)
T PRK11831 71 IPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGM 148 (269)
T ss_pred ccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHH
Confidence 6431 1245679999999999999999999988643211 12334445678899999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++|||+. .+.++||++++|++|++++.|+
T Consensus 149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~ 227 (269)
T PRK11831 149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGS 227 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 899999999975 6788999999999999999998
Q ss_pred ccCh
Q psy12625 253 VPGL 256 (612)
Q Consensus 253 ~~~~ 256 (612)
++++
T Consensus 228 ~~~~ 231 (269)
T PRK11831 228 AQAL 231 (269)
T ss_pred HHHH
Confidence 7755
No 71
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-45 Score=373.34 Aligned_cols=217 Identities=24% Similarity=0.446 Sum_probs=191.0
Q ss_pred EEEEeEEEEEEeeccccccccc-cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 21 LLFQDISYSALYYDTHSYSIKS-KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
++++|++++| ++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 1 l~~~~l~~~~----------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~ 65 (242)
T cd03295 1 IEFENVTKRY----------GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-----TSGEIFIDGEDI 65 (242)
T ss_pred CEEEEEEEEe----------CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCeEc
Confidence 4678999887 33 6799999999999999999999999999999999999886 589999999986
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc--ccCcccCCCChhhhh
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST--CKNTLTKHLSGGQKK 175 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~~~~LSgGerq 175 (612)
.. ....++.++|++|++.+++.+||+||+.+..... .....+.+++++++++.+|+.+ ..++++.+|||||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~q 142 (242)
T cd03295 66 REQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQ 142 (242)
T ss_pred CcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHH
Confidence 43 2345678999999999999999999998865432 2233445667899999999986 789999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|+++
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999874 899999999986 578899999999999999998876
Q ss_pred Ch
Q psy12625 255 GL 256 (612)
Q Consensus 255 ~~ 256 (612)
+.
T Consensus 222 ~~ 223 (242)
T cd03295 222 EI 223 (242)
T ss_pred HH
Confidence 54
No 72
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-45 Score=381.05 Aligned_cols=235 Identities=26% Similarity=0.365 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|... +...+++|+|||+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~y~~~-----~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i 71 (290)
T PRK13634 2 DITFQKVEHRYQYK-----TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP-----TSGTVTIGERVI 71 (290)
T ss_pred EEEEEEEEEEECCC-----CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence 48899999998320 00125699999999999999999999999999999999999886 689999999986
Q ss_pred cc------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625 100 QD------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS 170 (612)
Q Consensus 100 ~~------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 170 (612)
.. ....++.+|||+|++ .++ ..||+||+.++.... ..++++.+++++++++.+||. +..++++.+||
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (290)
T PRK13634 72 TAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFELS 147 (290)
T ss_pred ccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCC
Confidence 32 234567899999986 455 479999999875432 234455567889999999997 66899999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||+. .+.+.|||+++|++|++++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987 4999999999976 6788999999999999999
Q ss_pred ecCccChhh---HHhhcCCCCCC
Q psy12625 250 QGTVPGLVP---YLSDFGYQCPS 269 (612)
Q Consensus 250 ~G~~~~~~~---~f~~~g~~~p~ 269 (612)
.|+++++.+ .+...++.+|.
T Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 227 QGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred ECCHHHHhcCHHHHHHCCCCCCH
Confidence 999887642 23444554443
No 73
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.9e-46 Score=375.10 Aligned_cols=220 Identities=28% Similarity=0.368 Sum_probs=189.4
Q ss_pred EEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 21 LLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
|+++||++.| + ++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 2 l~~~~l~~~~----------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~ 66 (243)
T TIGR02315 2 LEVENLSKVY----------PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-----SSGSILLEGTDI 66 (243)
T ss_pred eEEEeeeeec----------CCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----CccEEEECCEEh
Confidence 6889999887 3 46799999999999999999999999999999999999886 689999999886
Q ss_pred cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhcc---C--CCCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625 100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL---G--NQYSRKAKESKVDSIADSLSISTCKNTLTKHL 169 (612)
Q Consensus 100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~---~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L 169 (612)
... ..+++.++|++|++.+++.+||+||+.++..... . ....+.+.+++++++++.+|+.+..++.+.+|
T Consensus 67 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 146 (243)
T TIGR02315 67 TKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQL 146 (243)
T ss_pred hhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccC
Confidence 431 2356789999999999999999999976431100 0 00112334567889999999998899999999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||++++|++|+++
T Consensus 147 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 147 SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIV 225 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999976 4899999999986 577899999999999999
Q ss_pred EecCccCh
Q psy12625 249 YQGTVPGL 256 (612)
Q Consensus 249 ~~G~~~~~ 256 (612)
+.|+++++
T Consensus 226 ~~~~~~~~ 233 (243)
T TIGR02315 226 FDGAPSEL 233 (243)
T ss_pred ecCCHHHh
Confidence 99987754
No 74
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=383.35 Aligned_cols=224 Identities=21% Similarity=0.295 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|... +.....+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++.
T Consensus 2 ~i~~~~l~~~y~~~-----~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-----~~G~i~~~g~~~ 71 (305)
T PRK13651 2 QIKVKNIVKIFNKK-----LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP-----DTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEEECCC-----CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceec
Confidence 48999999998320 01124699999999999999999999999999999999999986 579999998754
Q ss_pred c--------------------------chHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q psy12625 100 Q--------------------------DHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152 (612)
Q Consensus 100 ~--------------------------~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~ 152 (612)
. ....+++.+|||+|++ ..+...||+||+.|+.... ..++++.+++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~ 148 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKY 148 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHH
Confidence 1 1134567899999985 2333579999999875432 24455667789999
Q ss_pred HHHcCCc-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy12625 153 ADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231 (612)
Q Consensus 153 l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 231 (612)
++.+||. +..++++.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||.. .
T Consensus 149 l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~ 227 (305)
T PRK13651 149 IELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-N 227 (305)
T ss_pred HHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-H
Confidence 9999996 6889999999999999999999999999999999999999999999999999999888999999999975 5
Q ss_pred HHhcccceeeecCCeEEEecCccChh
Q psy12625 232 LLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 232 i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
+.+.|||+++|++|++++.|+++++.
T Consensus 228 ~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 228 VLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHh
Confidence 78999999999999999999988764
No 75
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1e-45 Score=368.69 Aligned_cols=215 Identities=27% Similarity=0.443 Sum_probs=187.6
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGY----------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-----RSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeec----------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEcC
Confidence 4689999887 345799999999999999999999999999999999999886 6899999998864
Q ss_pred ch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc-CCccccCcccCCCChhhhhH
Q psy12625 101 DH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL-SISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 101 ~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGerqR 176 (612)
.. .. .++.++|++|++.+++.+|++||+.+...... ..+.+++++++++.+ ++.+..++++.+||||||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qr 140 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQM 140 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHH
Confidence 32 22 35679999999999999999999988654321 122345677888888 58888899999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|+++..|++++.
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999878899999999976 57899999999999999999887654
No 76
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-46 Score=357.40 Aligned_cols=219 Identities=27% Similarity=0.423 Sum_probs=194.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+..| +..++|++||+++++||+++|+||||||||||||+|+|+.++ .+|+|.++|+++
T Consensus 3 mL~v~~l~~~Y----------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-----~~G~I~~~G~di 67 (237)
T COG0410 3 MLEVENLSAGY----------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-----RSGRIIFDGEDI 67 (237)
T ss_pred ceeEEeEeecc----------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeeEEECCeec
Confidence 68999999887 778899999999999999999999999999999999999985 589999999998
Q ss_pred cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC-CccccCcccCCCChhhhh
Q psy12625 100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-ISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerq 175 (612)
... +..|..++||||...+|+.|||+|||..++..+.. ++..+...+++.+.|- |.+..+++.++|||||||
T Consensus 68 t~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQ 143 (237)
T COG0410 68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQ 143 (237)
T ss_pred CCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccCCChHHHH
Confidence 643 44678999999999999999999999988654321 1222223788888884 888899999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
-++|||||+++|++|+|||||.||-|.-..+|.+.+++++++ |.||+.+.++.. ...+++||.++|.+|+++++|+++
T Consensus 144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999974 789999988865 678999999999999999999998
Q ss_pred Chhh
Q psy12625 255 GLVP 258 (612)
Q Consensus 255 ~~~~ 258 (612)
++..
T Consensus 223 eL~~ 226 (237)
T COG0410 223 ELLA 226 (237)
T ss_pred HHhc
Confidence 7753
No 77
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.1e-45 Score=371.39 Aligned_cols=222 Identities=20% Similarity=0.307 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++.+++|+|+++++||+++|+||||||||||+++|+|+.+|......+|+|.++|+++
T Consensus 1 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 1 AIEIENLNLFY----------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CEEEEEEEEEE----------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEc
Confidence 37899999987 34569999999999999999999999999999999999998621111289999999986
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 171 (612)
.. ....++.++|++|++.+++ .|++||+.+....+. ..+..+.+++++++++.+||. +..++.+++|||
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 147 (247)
T TIGR00972 71 YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSG 147 (247)
T ss_pred cccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCH
Confidence 43 2345678999999999988 999999988654321 123344556789999999998 778899999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ +|||+++|++. .+.++||++++|++|++++.|
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 148 GQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQ-QAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999999774 89999999986 578899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
++++.
T Consensus 226 ~~~~~ 230 (247)
T TIGR00972 226 PTEQI 230 (247)
T ss_pred CHHHH
Confidence 87765
No 78
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.3e-45 Score=364.18 Aligned_cols=208 Identities=25% Similarity=0.418 Sum_probs=183.6
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|++++|. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~---------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP---------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-----SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC---------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEcc
Confidence 78999999872 235799999999999999999999999999999999999876 6899999999864
Q ss_pred ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
+. ..+++.++|++|++.+++.+||+||+.+..... .......+++++++++.+|+.+..++.+.+|||||||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 144 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQ 144 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 31 235678999999999999999999998875432 1233445567899999999998889999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999878999999999986 6788999999999985
No 79
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-45 Score=377.54 Aligned_cols=221 Identities=24% Similarity=0.315 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|.. .+.+.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~~-------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKE-------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA-----ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCC-------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence 5899999998831 1234699999999999999999999999999999999999986 689999999987
Q ss_pred cc--hHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QD--HRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
.. ....++.++|++|++ ..++..||+||+.+..... ..++++..++++++++.+||++..++.+.+||||||||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qr 148 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQR 148 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH
Confidence 43 234567899999997 3667789999998865432 23455566788999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. .+ ..||++++|++|+++..|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999874 999999999986 45 5899999999999999999876
Q ss_pred hh
Q psy12625 256 LV 257 (612)
Q Consensus 256 ~~ 257 (612)
..
T Consensus 227 ~~ 228 (279)
T PRK13650 227 LF 228 (279)
T ss_pred HH
Confidence 54
No 80
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-45 Score=382.56 Aligned_cols=236 Identities=23% Similarity=0.324 Sum_probs=198.2
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.|... ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 20 ~~l~~~nl~~~y~~~-----~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-----~~G~I~i~g~~ 89 (320)
T PRK13631 20 IILRVKNLYCVFDEK-----QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-----KYGTIQVGDIY 89 (320)
T ss_pred ceEEEEeEEEEeCCC-----CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCeEEECCEE
Confidence 469999999998320 00124699999999999999999999999999999999999986 68999999987
Q ss_pred ccc------------------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC
Q psy12625 99 LQD------------------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158 (612)
Q Consensus 99 ~~~------------------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 158 (612)
+.+ ...+++.++||+|++ .+++ .||+||+.++.... ..+.++..++++++++.+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL 165 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGL 165 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCC
Confidence 632 134578899999987 4665 59999998865321 23445556788999999999
Q ss_pred c-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc
Q psy12625 159 S-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD 237 (612)
Q Consensus 159 ~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D 237 (612)
. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||
T Consensus 166 ~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~ad 244 (320)
T PRK13631 166 DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVAD 244 (320)
T ss_pred ChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence 7 6789999999999999999999999999999999999999999999999999999878999999999976 5778999
Q ss_pred ceeeecCCeEEEecCccChhh---HHhhcCCCCCC
Q psy12625 238 YLYVLTEGYCTYQGTVPGLVP---YLSDFGYQCPS 269 (612)
Q Consensus 238 ~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~p~ 269 (612)
++++|++|+++..|++++..+ .+...|+..|.
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 999999999999999887643 24455555443
No 81
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3e-45 Score=363.27 Aligned_cols=209 Identities=24% Similarity=0.388 Sum_probs=183.5
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.|. +.+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~---------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~i~ 66 (214)
T cd03292 1 IEFINVTKTYP---------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-----TSGTIRVNGQDVS 66 (214)
T ss_pred CEEEEEEEEeC---------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEcc
Confidence 46789999872 125799999999999999999999999999999999999886 6899999999864
Q ss_pred ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
.. ...++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+|+++..++++.+|||||||
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 143 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQ 143 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHH
Confidence 31 235678999999999999999999998875432 1233445567899999999999899999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999878999999999976 57788999999999974
No 82
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-45 Score=363.19 Aligned_cols=210 Identities=29% Similarity=0.457 Sum_probs=184.9
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++++++|+|+++++| +++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~~~~~~----------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRY----------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-----SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEE----------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC-----CccEEEECCCccc
Confidence 4689999987 3457999999999999 9999999999999999999999886 6899999998764
Q ss_pred ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
+. ..+++.++|++|++.+++.+||+||+.+..... ..++.+.+++++++++.+||.+..++.+.+||||||||++|
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 141 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGI 141 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHH
Confidence 32 345678999999999999999999998865443 12333445678899999999988899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+++|++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999986 589999999986 577899999999999998765
No 83
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-45 Score=378.65 Aligned_cols=207 Identities=23% Similarity=0.333 Sum_probs=183.1
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--Hh----hccceEEEcc
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RM----LRKESCYIMQ 114 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~----~~~~i~yv~Q 114 (612)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++.+. .. .++.++|++|
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-----~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q 109 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP-----TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCEEccccChhhhhhhhcCcEEEEec
Confidence 667899999999999999999999999999999999999986 589999999986432 11 2357999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeC
Q psy12625 115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194 (612)
Q Consensus 115 ~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDE 194 (612)
++.+++.+||+||+.+..... .....+.+++++++++.+||.+..++++++||||||||++|||||+.+|++|||||
T Consensus 110 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 110 SFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred CcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999999999998875432 12334455678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 195 PTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 195 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
||+|||+.++..+.+.|+++++ +|+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 187 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999976 4899999999976 57889999999999999999987765
No 84
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=5e-45 Score=367.34 Aligned_cols=217 Identities=26% Similarity=0.426 Sum_probs=189.5
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAY----------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA-----QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----CceEEEECCEEcc
Confidence 7889999987 346799999999999999999999999999999999999886 6899999998864
Q ss_pred ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.. ...++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+||.+..++.+++||||||||++|
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~l 143 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEI 143 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH
Confidence 32 223457999999998888999999998765432 22334445678899999999998999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||||+.+|++++|||||+|||+.++..+.+.|+++++ +|.|||+++|++. .+. .+|++++|++|+++..|++++..
T Consensus 144 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 144 ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999999999999999985 6899999999986 454 59999999999999998876553
No 85
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.3e-45 Score=384.22 Aligned_cols=233 Identities=22% Similarity=0.292 Sum_probs=197.0
Q ss_pred ceeEEEEeEEEEEEeecc---ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625 18 HFNLLFQDISYSALYYDT---HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~---~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~ 94 (612)
...|+++||++.|..... .++..+...+++|||+++++||+++|+|+||||||||+++|+|+++| .+|+|.+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-----~~G~I~~ 80 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-----TDGEVAW 80 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-----CCcEEEE
Confidence 347999999999843100 00011235799999999999999999999999999999999999986 5899999
Q ss_pred CCEeccch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCccc
Q psy12625 95 NETRLQDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLT 166 (612)
Q Consensus 95 ~g~~~~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~ 166 (612)
+|+++.+. ..+++.++||+|++ .++|.+||.||+.+......+ ..++++.+++++++++.+||. +..++++
T Consensus 81 ~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p 159 (331)
T PRK15079 81 LGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYP 159 (331)
T ss_pred CCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCc
Confidence 99987532 23567899999997 688899999999886543211 234556677889999999994 5789999
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.+|||||||||+|||||+.+|++|++||||+|||+.++.+++++|+++.+ .|.|+|++|||+. .+.++||++++|++|
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G 238 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLG 238 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999987 4999999999976 577899999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
++++.|+++++.
T Consensus 239 ~ive~g~~~~i~ 250 (331)
T PRK15079 239 HAVELGTYDEVY 250 (331)
T ss_pred EEEEEcCHHHHH
Confidence 999999987654
No 86
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-45 Score=370.04 Aligned_cols=219 Identities=23% Similarity=0.444 Sum_probs=193.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~----------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAY----------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-----DAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEe----------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEC
Confidence 58899999987 346799999999999999999999999999999999999886 689999999986
Q ss_pred cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
... ...++.++|++|++.+++.+||+||+.+...... ...+++.+++++++++.+|+.+..++.+++||||||||
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 145 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRR 145 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHH
Confidence 432 2246789999999999999999999987643221 12334455678999999999988899999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
++|||+|+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|++. ++.+.||++++|++|++++.|++++.
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999999878999999999975 67899999999999999999987765
No 87
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-45 Score=368.88 Aligned_cols=219 Identities=26% Similarity=0.416 Sum_probs=191.2
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
++|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++
T Consensus 1 ~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~ 65 (242)
T PRK11124 1 MSIQLNGINCFY----------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-----RSGTLNIAGNH 65 (242)
T ss_pred CEEEEEeeEEEE----------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEe
Confidence 368899999988 446799999999999999999999999999999999999886 68999999987
Q ss_pred cc-----c---hHhhccceEEEccCCCCCCCCCHHHHHHHH-HHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625 99 LQ-----D---HRMLRKESCYIMQDNLLQELLTVEESLTVA-AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL 169 (612)
Q Consensus 99 ~~-----~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L 169 (612)
+. . ....++.++|++|++.+++.+||.||+.+. .... .....+..+++.++++.+|+.+..++.+.+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 142 (242)
T PRK11124 66 FDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPLHL 142 (242)
T ss_pred cccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 52 1 123567899999999999999999999753 2221 1223344567899999999998899999999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+++|++++|++|++++
T Consensus 143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~ 221 (242)
T PRK11124 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVE 221 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999878999999999986 5678899999999999999
Q ss_pred ecCccCh
Q psy12625 250 QGTVPGL 256 (612)
Q Consensus 250 ~G~~~~~ 256 (612)
.|++++.
T Consensus 222 ~~~~~~~ 228 (242)
T PRK11124 222 QGDASCF 228 (242)
T ss_pred eCCHHHh
Confidence 9987653
No 88
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.7e-45 Score=362.89 Aligned_cols=202 Identities=34% Similarity=0.490 Sum_probs=176.9
Q ss_pred EEeEEEEEEeeccccccccc-cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc
Q psy12625 23 FQDISYSALYYDTHSYSIKS-KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD 101 (612)
Q Consensus 23 ~~~ls~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~ 101 (612)
++|++++| ++ +++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++..
T Consensus 2 ~~~l~~~~----------~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~ 66 (205)
T cd03226 2 IENISFSY----------KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-----SSGSILLNGKPIKA 66 (205)
T ss_pred cccEEEEe----------CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEhhh
Confidence 57888887 33 6799999999999999999999999999999999999886 68999999998643
Q ss_pred hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 102 HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 102 ~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
...++.++|++|++. .+..+|++||+.+..... . ..+++++++++.+||.+..++++++||||||||++||
T Consensus 67 -~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 138 (205)
T cd03226 67 -KERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIA 138 (205)
T ss_pred -HHhhcceEEEecChhhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHH
Confidence 345678999999974 334579999998754321 1 1235688999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
|||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999999878999999999986 577899999999999874
No 89
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.1e-45 Score=371.37 Aligned_cols=219 Identities=25% Similarity=0.366 Sum_probs=192.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRY----------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-----SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEEc
Confidence 48999999988 446799999999999999999999999999999999999886 689999999876
Q ss_pred cc---------------hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-C
Q psy12625 100 QD---------------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-N 163 (612)
Q Consensus 100 ~~---------------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~ 163 (612)
.. ...+++.++|++|++.+++.+||+||+.++..... ...+.+.++++.++++.+|+.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 12456789999999999999999999987542111 123445567789999999998764 8
Q ss_pred cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
+.+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|+
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~ 226 (257)
T PRK10619 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH 226 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 889999999999999999999999999999999999999999999999999888999999999976 5778899999999
Q ss_pred CCeEEEecCccCh
Q psy12625 244 EGYCTYQGTVPGL 256 (612)
Q Consensus 244 ~G~iv~~G~~~~~ 256 (612)
+|++++.|++++.
T Consensus 227 ~G~i~~~~~~~~~ 239 (257)
T PRK10619 227 QGKIEEEGAPEQL 239 (257)
T ss_pred CCEEEEeCCHHHh
Confidence 9999999987765
No 90
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-45 Score=377.51 Aligned_cols=223 Identities=24% Similarity=0.331 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|.. .....+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 2 ~i~~~~l~~~~~~-----~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSP-----GTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP-----SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCC-----CCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence 5889999998821 000125699999999999999999999999999999999999986 689999999986
Q ss_pred cc------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625 100 QD------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS 170 (612)
Q Consensus 100 ~~------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 170 (612)
.. ....++.++|++|++ .++ .+||+||+.+..... ...+++.+++++++++.+||+ +..++++++||
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFELS 147 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCC
Confidence 32 134567899999997 344 589999998765432 233455567789999999997 67899999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999878999999999976 67899999999999999999
Q ss_pred cCccChh
Q psy12625 251 GTVPGLV 257 (612)
Q Consensus 251 G~~~~~~ 257 (612)
|+++++.
T Consensus 227 g~~~~~~ 233 (287)
T PRK13641 227 ASPKEIF 233 (287)
T ss_pred CCHHHHh
Confidence 9987654
No 91
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-45 Score=365.51 Aligned_cols=218 Identities=25% Similarity=0.351 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|.. +...+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~------~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQE------GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-----TSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCC------CCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEc
Confidence 5899999998831 00125699999999999999999999999999999999999876 689999999986
Q ss_pred cch--H---hh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625 100 QDH--R---ML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 100 ~~~--~---~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 173 (612)
... . .. ++.++|++|++.+++.+|++||+.+..... ...+++.+++++++++.+||.+..++.+.+|||||
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 150 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGE 150 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence 432 1 12 367999999999999999999998865432 22334455678999999999998999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
|||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +|+|||++|||+. ++.. +|++++|++|++++.|+
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999976 5899999999986 4544 68999999999998886
Q ss_pred c
Q psy12625 253 V 253 (612)
Q Consensus 253 ~ 253 (612)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 4
No 92
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.8e-45 Score=361.57 Aligned_cols=209 Identities=28% Similarity=0.425 Sum_probs=183.7
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSF----------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-----DSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEE----------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEECC
Confidence 4689999987 346799999999999999999999999999999999999886 6899999999863
Q ss_pred c----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 101 D----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 101 ~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
. ...+++.++|++|++.+++.+|++||+.+...... .....+.+++++++++.+|+.+..++++.+||||||||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 143 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQR 143 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHH
Confidence 2 13456789999999999999999999988643111 22334455678999999999998999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.++||++++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999888899999999986 67789999999999974
No 93
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-45 Score=373.08 Aligned_cols=219 Identities=24% Similarity=0.359 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 1 ml~~~~l~~~~----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i 65 (271)
T PRK13638 1 MLATSDLWFRY----------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP-----QKGAVLWQGKPL 65 (271)
T ss_pred CeEEEEEEEEc----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CccEEEECCEEc
Confidence 37899999987 446799999999999999999999999999999999999886 689999999986
Q ss_pred cc----hHhhccceEEEccCCCC-CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 100 QD----HRMLRKESCYIMQDNLL-QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l-~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
.. ....++.++|++|++.. +...|+.||+.+..... ....++..++++++++.+|+.+..++++.+||||||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 142 (271)
T PRK13638 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQK 142 (271)
T ss_pred ccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHH
Confidence 31 12456789999999753 34468999998764332 223444456788999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
||++||++|+.+|+++||||||+|||+.++..+.+.|++++++|+|||+++||+. .+.++||++++|++|++++.|+++
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877899999999986 577899999999999999999887
Q ss_pred Chh
Q psy12625 255 GLV 257 (612)
Q Consensus 255 ~~~ 257 (612)
++.
T Consensus 222 ~~~ 224 (271)
T PRK13638 222 EVF 224 (271)
T ss_pred HHh
Confidence 653
No 94
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=374.72 Aligned_cols=221 Identities=29% Similarity=0.398 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.|. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~---------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-----~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS---------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-----SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC---------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCEEC
Confidence 689999999882 235699999999999999999999999999999999999886 689999999986
Q ss_pred c--c--hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 100 Q--D--HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 100 ~--~--~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
. . ...+++.++|++|++. .+...||+||+.+..... ..+..+.+++++++++.+||.+..++++.+||||||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~ 147 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQK 147 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHH
Confidence 3 1 2346788999999973 234579999998864322 234455567789999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|++++.|++
T Consensus 148 qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~ 226 (283)
T PRK13636 148 KRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNP 226 (283)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999875 899999999986 57789999999999999999998
Q ss_pred cChhh
Q psy12625 254 PGLVP 258 (612)
Q Consensus 254 ~~~~~ 258 (612)
++...
T Consensus 227 ~~~~~ 231 (283)
T PRK13636 227 KEVFA 231 (283)
T ss_pred HHHhc
Confidence 87643
No 95
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-45 Score=376.77 Aligned_cols=223 Identities=25% Similarity=0.374 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|... ....+++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~y~~~-----~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-----~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKG-----TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP-----TTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCC-----CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence 58999999998310 00125699999999999999999999999999999999999986 689999999986
Q ss_pred cc------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625 100 QD------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS 170 (612)
Q Consensus 100 ~~------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 170 (612)
.. ...+++.+|||+|++ .+++ .||+||+.+..... ..++.+.+++++++++.+||. +..++.+.+||
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMS 147 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 42 134678899999986 4555 59999999865332 234455667889999999997 67899999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999986 5999999999976 5778999999999999999
Q ss_pred ecCccChh
Q psy12625 250 QGTVPGLV 257 (612)
Q Consensus 250 ~G~~~~~~ 257 (612)
.|+++++.
T Consensus 227 ~g~~~~~~ 234 (286)
T PRK13646 227 QTSPKELF 234 (286)
T ss_pred ECCHHHHH
Confidence 99987754
No 96
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=369.06 Aligned_cols=224 Identities=19% Similarity=0.276 Sum_probs=190.7
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|..+.+.+|+|.++|++
T Consensus 6 ~~l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 75 (254)
T PRK14273 6 AIIETENLNLFY----------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN 75 (254)
T ss_pred ceEEEeeeEEEe----------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEe
Confidence 379999999987 3467999999999999999999999999999999999999863222358999999988
Q ss_pred ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC----ccccCcccCCCC
Q psy12625 99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI----STCKNTLTKHLS 170 (612)
Q Consensus 99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LS 170 (612)
+.. ....++.++|++|++.+++ +||+||+.+...... .......+++++++++.+|+ .+..++.+++||
T Consensus 76 i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 152 (254)
T PRK14273 76 IYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLS 152 (254)
T ss_pred cccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCC
Confidence 632 1345778999999988885 999999988654321 11233445678889999987 456788999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||||++|||+|+.+|++++|||||+|||+.++..+++.|+++++ ++|||+++|++. .+.+++|++++|++|+++..
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999986 57789999999999999999
Q ss_pred cCccChh
Q psy12625 251 GTVPGLV 257 (612)
Q Consensus 251 G~~~~~~ 257 (612)
|+++++.
T Consensus 231 g~~~~~~ 237 (254)
T PRK14273 231 SSTDELF 237 (254)
T ss_pred CCHHHHH
Confidence 9887653
No 97
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=369.30 Aligned_cols=223 Identities=21% Similarity=0.320 Sum_probs=190.3
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+
T Consensus 10 ~~~l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 79 (258)
T PRK14268 10 QPQIKVENLNLWY----------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE 79 (258)
T ss_pred ceeEEEeeeEEEe----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCE
Confidence 4479999999987 446799999999999999999999999999999999999874211136899999998
Q ss_pred eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCC
Q psy12625 98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHL 169 (612)
Q Consensus 98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~L 169 (612)
++.. ...+++.++|++|++.+++ +|++||+.+..... ..+.++.+++++++++.+|+. +..++.+.+|
T Consensus 80 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 155 (258)
T PRK14268 80 DIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALSL 155 (258)
T ss_pred EcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhC
Confidence 8642 1235678999999998888 89999998865432 123344456788999999983 5578899999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++||+. .+.++||++++|++|++++
T Consensus 156 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 156 SGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIE 233 (258)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 799999999976 5778999999999999999
Q ss_pred ecCccCh
Q psy12625 250 QGTVPGL 256 (612)
Q Consensus 250 ~G~~~~~ 256 (612)
.|+++++
T Consensus 234 ~~~~~~~ 240 (258)
T PRK14268 234 FGQTRQI 240 (258)
T ss_pred eCCHHHH
Confidence 9988765
No 98
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-45 Score=367.18 Aligned_cols=217 Identities=24% Similarity=0.410 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHY----------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA-----TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEee----------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----CCceEEECCEec
Confidence 68999999987 346799999999999999999999999999999999999886 689999999986
Q ss_pred cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc-CCccccCcccCCCChhhhh
Q psy12625 100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL-SISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGerq 175 (612)
... ...++.++|++|++.+++.+||.||+.++.... ...+.++.++++++.+ ++.+..++++.+|||||||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~q 144 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQ 144 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHH
Confidence 432 224678999999999999999999998764221 1222345677888888 5887788899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|++++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999888999999999975 6789999999999999999999876
Q ss_pred hh
Q psy12625 256 LV 257 (612)
Q Consensus 256 ~~ 257 (612)
+.
T Consensus 224 ~~ 225 (237)
T PRK11614 224 LL 225 (237)
T ss_pred Hh
Confidence 63
No 99
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.1e-44 Score=361.61 Aligned_cols=211 Identities=22% Similarity=0.388 Sum_probs=185.1
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.|. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~---------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL---------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-----SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec---------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcc
Confidence 78899999872 235799999999999999999999999999999999999886 6899999998864
Q ss_pred ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
.. ..+++.++|++|++.+++.+|++||+.+..... ..+.++.+++++++++.+|+.+..++.+.+|||||||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 144 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQ 144 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHH
Confidence 31 125678999999998888999999998865432 2233444567889999999998889999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+.||++++|++|+++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999999999878899999999986 5778999999999999753
No 100
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.5e-44 Score=361.59 Aligned_cols=223 Identities=36% Similarity=0.540 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.+.++|++++++. ....+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ ..+.+|+|.++|+++
T Consensus 3 ~~~~~~~~~~~~~------~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~--~~~~~G~i~~~g~~~ 74 (226)
T cd03234 3 VLPWWDVGLKAKN------WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEG--GGTTSGQILFNGQPR 74 (226)
T ss_pred cceeecceeeeec------CccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCC--CCCCceEEEECCEEC
Confidence 4678999999842 11147899999999999999999999999999999999999871 012689999999986
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHH-HHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS-IADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
.. ...++.++|++|++.+++.+||+||+.+......+....+....+++++ .++.+++++..++.+++||||||||++
T Consensus 75 ~~-~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 153 (226)
T cd03234 75 KP-DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVS 153 (226)
T ss_pred Ch-HHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHH
Confidence 43 4567889999999999999999999998755432221122223344555 899999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++..++.+.||++++|++|++++.|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998788999999999854688999999999999998865
No 101
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.9e-45 Score=369.12 Aligned_cols=218 Identities=24% Similarity=0.364 Sum_probs=190.8
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRF----------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-----DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEe----------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcc
Confidence 4689999987 346799999999999999999999999999999999999886 6899999998863
Q ss_pred ch---------------HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc
Q psy12625 101 DH---------------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165 (612)
Q Consensus 101 ~~---------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 165 (612)
.. ..+++.++|++|++.+++..|+.||+.++..... .....+.+++++++++.+|+.+..++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 21 2356789999999999999999999987542211 123344556789999999999999999
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+++|++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999874 899999999986 57789999999999
Q ss_pred CeEEEecCccCh
Q psy12625 245 GYCTYQGTVPGL 256 (612)
Q Consensus 245 G~iv~~G~~~~~ 256 (612)
|++++.|++++.
T Consensus 223 G~i~~~g~~~~~ 234 (252)
T TIGR03005 223 GRIVEQGKPDEI 234 (252)
T ss_pred CEEEEeCCHHHH
Confidence 999999987654
No 102
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=368.23 Aligned_cols=213 Identities=25% Similarity=0.381 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++|+++.| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++
T Consensus 1 ml~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 65 (255)
T PRK11248 1 MLQISHLYADY----------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-----QHGSITLDGKPV 65 (255)
T ss_pred CEEEEEEEEEe----------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEC
Confidence 37899999987 346799999999999999999999999999999999999886 689999999986
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.. .++.++|++|++.+++.+||+||+.+..... .....+.+++++++++.+||.+..++++.+||||||||++|
T Consensus 66 ~~---~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~l 139 (255)
T PRK11248 66 EG---PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGI 139 (255)
T ss_pred CC---CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHH
Confidence 43 2346899999999999999999998765432 22344455678999999999988899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec--CCeEEEecCcc
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT--EGYCTYQGTVP 254 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 254 (612)
|++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++|||+. .+.++||++++|+ +|+++..++.+
T Consensus 140 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 140 ARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999999999965 6899999999986 6788999999998 59999887654
No 103
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6e-45 Score=360.45 Aligned_cols=208 Identities=31% Similarity=0.457 Sum_probs=179.1
Q ss_pred EEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc
Q psy12625 22 LFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD 101 (612)
Q Consensus 22 ~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~ 101 (612)
+++|+++.|. ..++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++..
T Consensus 1 ~~~~l~~~~~--------~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~~ 67 (211)
T cd03225 1 ELKNLSFSYP--------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-----TSGEVLVDGKDLTK 67 (211)
T ss_pred CceeEEEecC--------CCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEEccc
Confidence 3578888772 1126799999999999999999999999999999999999886 68999999988643
Q ss_pred --hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 102 --HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 102 --~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
...+++.++|++|++. .++.+|++||+.+..... .......+++++++++.+||.+..++++++||||||||++
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 144 (211)
T cd03225 68 LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVA 144 (211)
T ss_pred CCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 2345678999999974 356789999998865432 1233444567889999999998889999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999878999999999976 6778899999999885
No 104
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=369.95 Aligned_cols=219 Identities=28% Similarity=0.427 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-----~~G~i~~~g~~~ 66 (258)
T PRK13548 2 MLEARNLSVRL----------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-----DSGEVRLNGRPL 66 (258)
T ss_pred eEEEEeEEEEe----------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCEEEECCEEc
Confidence 48899999987 446799999999999999999999999999999999999886 689999999886
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
.. ....++.++|++|++.+++.+||+||+.+..... ....+..+++++++++.+|+.+..++.+++||||||||+
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv 143 (258)
T PRK13548 67 ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRV 143 (258)
T ss_pred ccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHH
Confidence 43 2334568999999998888899999998864321 112233456788999999999989999999999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 178 SIALELL------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 178 ~ia~aL~------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
+||+||+ .+|++++|||||+|||+.++..+.+.|++++ ++|+|||+++||+. .+.++||++++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999998 57899999999976 57789999999999999999
Q ss_pred cCccChh
Q psy12625 251 GTVPGLV 257 (612)
Q Consensus 251 G~~~~~~ 257 (612)
|+++++.
T Consensus 223 ~~~~~~~ 229 (258)
T PRK13548 223 GTPAEVL 229 (258)
T ss_pred CCHHHHh
Confidence 9876653
No 105
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=366.88 Aligned_cols=225 Identities=22% Similarity=0.315 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 72 (250)
T PRK14247 3 KIEIRDLKVSF----------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI 72 (250)
T ss_pred eEEEEeeEEEE----------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEEC
Confidence 58899999987 34679999999999999999999999999999999999987421113689999999986
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCChhh
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLSGGQ 173 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSgGe 173 (612)
.. ...+++.++|++|++.+++.+||+||+.+....... ....++.++.++++++.+||.+ ..++.+.+|||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 73 FKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred CcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 43 234567899999999888899999999886543210 1123444567889999999853 5688899999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|+++|++. .+.+.||++++|++|+++..|++
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPT 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCH
Confidence 9999999999999999999999999999999999999999965 799999999986 57789999999999999999988
Q ss_pred cChh
Q psy12625 254 PGLV 257 (612)
Q Consensus 254 ~~~~ 257 (612)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14247 230 REVF 233 (250)
T ss_pred HHHH
Confidence 7653
No 106
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=379.80 Aligned_cols=231 Identities=21% Similarity=0.290 Sum_probs=195.6
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.|..........+.+.+|+|||++|++||+++|+|+||||||||+++|+|+++| .+|+|.++|++
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-----~~G~i~~~g~~ 78 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-----TGGELYYQGQD 78 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCcEEEECCEE
Confidence 3689999999984310000001235799999999999999999999999999999999999886 58999999998
Q ss_pred ccch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625 99 LQDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS 170 (612)
Q Consensus 99 ~~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 170 (612)
+... ..+++.++||+|++ .+.+.+|+.+++........ ...+.+.++++.++++.+||. ...++++++||
T Consensus 79 l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LS 156 (327)
T PRK11308 79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYPHMFS 156 (327)
T ss_pred cCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCCccCC
Confidence 7432 23567899999998 58899999999987654321 234555667899999999996 46799999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||+|||||+.+|++||+||||++||..++.+++++|+++++ .|+|+|++|||.. .+.++||+|++|++|++++
T Consensus 157 gGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive 235 (327)
T PRK11308 157 GGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVE 235 (327)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987 5999999999976 5778999999999999999
Q ss_pred ecCccChh
Q psy12625 250 QGTVPGLV 257 (612)
Q Consensus 250 ~G~~~~~~ 257 (612)
.|+++++.
T Consensus 236 ~g~~~~~~ 243 (327)
T PRK11308 236 KGTKEQIF 243 (327)
T ss_pred ECCHHHHh
Confidence 99987764
No 107
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-45 Score=389.17 Aligned_cols=229 Identities=21% Similarity=0.273 Sum_probs=196.2
Q ss_pred eEEEEeEEEEEEeecc--------------ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCC
Q psy12625 20 NLLFQDISYSALYYDT--------------HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT 85 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~--------------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~ 85 (612)
.|+++||++.|-.... ..+.++...+|+|+|+++++||+++|+||||||||||||+|+|+++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--- 80 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--- 80 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC---
Confidence 5889999988743210 01122344589999999999999999999999999999999999986
Q ss_pred CCceeEEEECCEeccch--Hh----hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc
Q psy12625 86 ETNSGYIEINETRLQDH--RM----LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159 (612)
Q Consensus 86 ~~~~G~I~~~g~~~~~~--~~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 159 (612)
.+|+|.++|+++... .. .++.++||+|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||+
T Consensus 81 --~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~ 155 (400)
T PRK10070 81 --TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLE 155 (400)
T ss_pred --CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 689999999987532 11 2457999999999999999999999876543 233445567889999999999
Q ss_pred cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccc
Q psy12625 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADY 238 (612)
Q Consensus 160 ~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~ 238 (612)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||+
T Consensus 156 ~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dr 234 (400)
T PRK10070 156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDR 234 (400)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999999999999976 5899999999976 67889999
Q ss_pred eeeecCCeEEEecCccChh
Q psy12625 239 LYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 239 v~~L~~G~iv~~G~~~~~~ 257 (612)
+++|++|+++..|+++++.
T Consensus 235 i~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 235 IAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEEEECCEEEecCCHHHHH
Confidence 9999999999999887653
No 108
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=371.84 Aligned_cols=218 Identities=24% Similarity=0.324 Sum_probs=190.5
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||++.|. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~---------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP---------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-----QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC---------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEECC
Confidence 78899999872 235699999999999999999999999999999999999886 6899999999864
Q ss_pred ch---HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 101 DH---RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 101 ~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
.. ...++.++|++|++. .+...|+.||+.+..... ..+..+.+++++++++.+||.+..++++++||||||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 144 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQC 144 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHH
Confidence 31 345678999999975 356689999998765332 23445556778999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
++||+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. .+ ..||++++|++|++++.|++++.
T Consensus 145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999878999999999986 45 57999999999999999998765
Q ss_pred h
Q psy12625 257 V 257 (612)
Q Consensus 257 ~ 257 (612)
.
T Consensus 223 ~ 223 (274)
T PRK13644 223 L 223 (274)
T ss_pred h
Confidence 3
No 109
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=367.34 Aligned_cols=224 Identities=22% Similarity=0.320 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 4 AIETVNLRVYY----------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred eEEEEeEEEEe----------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 58999999987 34679999999999999999999999999999999999987621113589999999986
Q ss_pred c--c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625 100 Q--D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~--~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 171 (612)
. + ...+++.++|++|++.+++.+||.||+.+....+. ...+.++..++++++++.+|+. +..++.+.+|||
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (253)
T PRK14267 74 YSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152 (253)
T ss_pred cccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence 4 1 23456789999999999999999999988654321 0112334456788999999984 456888999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 230 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVG 230 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999975 689999999976 578899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
+++++
T Consensus 231 ~~~~~ 235 (253)
T PRK14267 231 PTRKV 235 (253)
T ss_pred CHHHH
Confidence 87765
No 110
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=372.50 Aligned_cols=220 Identities=26% Similarity=0.337 Sum_probs=192.6
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-----~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD--------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-----EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC--------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence 5899999998721 235699999999999999999999999999999999999986 689999999987
Q ss_pred cch--HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QDH--RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~~--~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
... ...++.++|++|++. .++..||.||+.+..... ..+.++.+++++++++.+||.+..++++.+||||||||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr 148 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQR 148 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHH
Confidence 532 345678999999973 666789999998865432 23445556778999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+. .||++++|++|++++.|++++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 899999999986 454 699999999999999999876
Q ss_pred hh
Q psy12625 256 LV 257 (612)
Q Consensus 256 ~~ 257 (612)
+.
T Consensus 227 ~~ 228 (279)
T PRK13635 227 IF 228 (279)
T ss_pred Hh
Confidence 54
No 111
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.2e-44 Score=362.49 Aligned_cols=217 Identities=27% Similarity=0.378 Sum_probs=181.5
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||++.|.. +....++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPT------GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-----TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccC------CCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEcc
Confidence 688999998721 00113699999999999999999999999999999999999886 6899999999864
Q ss_pred ch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHH-HHHHHHHcCCc-cccCcccCCCCh
Q psy12625 101 DH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESK-VDSIADSLSIS-TCKNTLTKHLSG 171 (612)
Q Consensus 101 ~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~~~~LSg 171 (612)
.. ..+++.++|++|++ .+++.+||+||+.+....... . ...+..+. ++++++.+|+. +..++.+.+|||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 148 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSG 148 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhCCchhcCH
Confidence 32 24567899999998 467789999999876543211 1 11222222 36889999995 678999999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|+++..
T Consensus 149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEec
Confidence 9999999999999999999999999999999999999999999875 899999999986 57779999999999999875
Q ss_pred c
Q psy12625 251 G 251 (612)
Q Consensus 251 G 251 (612)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 4
No 112
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=372.17 Aligned_cols=223 Identities=26% Similarity=0.388 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|... +...+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~~~~-----~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-----~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAG-----TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-----TQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCC-----CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEc
Confidence 58899999988310 00124699999999999999999999999999999999999886 689999999986
Q ss_pred cc------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625 100 QD------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS 170 (612)
Q Consensus 100 ~~------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 170 (612)
.. ...+++.++|++|++ .+++ .||+||+.+..... ..+.++.+++++++++.+||. +..++++.+||
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 147 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFELS 147 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 42 134567899999996 4555 69999998764332 123444556788999999997 46799999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+++..
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877899999999976 57789999999999999999
Q ss_pred cCccChh
Q psy12625 251 GTVPGLV 257 (612)
Q Consensus 251 G~~~~~~ 257 (612)
|+++++.
T Consensus 227 g~~~~~~ 233 (280)
T PRK13649 227 GKPKDIF 233 (280)
T ss_pred CCHHHHh
Confidence 9887653
No 113
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=368.76 Aligned_cols=221 Identities=22% Similarity=0.379 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRF----------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP-----TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEE----------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-----CcceEEECCEEC
Confidence 68999999987 456799999999999999999999999999999999999886 689999999986
Q ss_pred cch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccC----------CCC--CHHHHHHHHHHHHHHcCCccccCc
Q psy12625 100 QDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLG----------NQY--SRKAKESKVDSIADSLSISTCKNT 164 (612)
Q Consensus 100 ~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~ 164 (612)
... .. .+..++|++|++.+++.+||+||+.++...... ... ...+..++++++++.+|+.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 432 22 345699999999999999999999986431100 000 112234568889999999999999
Q ss_pred ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeec
Q psy12625 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
++++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|+
T Consensus 150 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~ 228 (255)
T PRK11300 150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN 228 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999875 899999999976 6788999999999
Q ss_pred CCeEEEecCccCh
Q psy12625 244 EGYCTYQGTVPGL 256 (612)
Q Consensus 244 ~G~iv~~G~~~~~ 256 (612)
+|++++.|++++.
T Consensus 229 ~g~i~~~~~~~~~ 241 (255)
T PRK11300 229 QGTPLANGTPEEI 241 (255)
T ss_pred CCeEEecCCHHHH
Confidence 9999999987765
No 114
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-45 Score=354.26 Aligned_cols=220 Identities=26% Similarity=0.403 Sum_probs=207.6
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|++++|++++ +++.+++|+||++++|++.+++|||||||||.+|+|.|+++| ++|+|.++|.++
T Consensus 2 ~L~ie~vtK~F----------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~-----~~G~I~~~g~~~ 66 (300)
T COG4152 2 ALEIEGVTKSF----------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-----TEGEITWNGGPL 66 (300)
T ss_pred ceEEecchhcc----------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc-----cCceEEEcCcch
Confidence 58899999987 889999999999999999999999999999999999999986 689999999986
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
. ...+.+|||.|.+..+++.+||.|.+.|.+.++ .+++++.+++++.+|+++++.....+++.+||-|++|++.+
T Consensus 67 ~--~~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQf 141 (300)
T COG4152 67 S--QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQF 141 (300)
T ss_pred h--hhhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHH
Confidence 4 345678999999999999999999999999987 57888999999999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhhH
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPY 259 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 259 (612)
..+++++|++++||||+|||||.+.+.+-+.+.+++++|.|||+++|.+. .+.++||++++|++|+.|.+|+.+++...
T Consensus 142 isaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 142 ISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred HHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999986 68999999999999999999999988764
Q ss_pred H
Q psy12625 260 L 260 (612)
Q Consensus 260 f 260 (612)
|
T Consensus 221 ~ 221 (300)
T COG4152 221 F 221 (300)
T ss_pred c
Confidence 4
No 115
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-44 Score=365.34 Aligned_cols=220 Identities=26% Similarity=0.402 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++
T Consensus 2 ~i~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~ 66 (242)
T TIGR03411 2 ILYLEGLSVSF----------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-----DEGSVLFGGTDL 66 (242)
T ss_pred eEEEEeeEEEc----------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCCeEEECCeec
Confidence 47899999987 345799999999999999999999999999999999999886 689999999886
Q ss_pred cch--H-hhccceEEEccCCCCCCCCCHHHHHHHHHHhccC--C---CCCHHHHHHHHHHHHHHcCCccccCcccCCCCh
Q psy12625 100 QDH--R-MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG--N---QYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~~--~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg 171 (612)
... . ..++.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+|+++..++.+++|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 146 (242)
T TIGR03411 67 TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSH 146 (242)
T ss_pred CCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCH
Confidence 432 2 2345799999999999999999999886432100 0 011233456789999999999999999999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|+++..|
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeC
Confidence 999999999999999999999999999999999999999999976 689999999976 678899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
++++.
T Consensus 225 ~~~~~ 229 (242)
T TIGR03411 225 SLDQV 229 (242)
T ss_pred CHHHH
Confidence 87654
No 116
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-45 Score=369.43 Aligned_cols=220 Identities=27% Similarity=0.415 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~ 66 (255)
T PRK11231 2 TLRTENLTVGY----------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-----QSGTVFLGDKPI 66 (255)
T ss_pred EEEEEeEEEEE----------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----CCcEEEECCEEh
Confidence 58899999987 456799999999999999999999999999999999999876 689999999886
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHL--KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
.. ....++.++|++|++.+++.+|+.||+.++... ... ...+...+++++++++.+|+.+..++.+.+|||||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 145 (255)
T PRK11231 67 SMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW-GRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQ 145 (255)
T ss_pred HHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc-cCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHH
Confidence 43 234566799999999888889999999875311 100 1112334567889999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|+++..|++++
T Consensus 146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 224 (255)
T PRK11231 146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEE 224 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHH
Confidence 999999999999999999999999999999999999999878999999999986 6789999999999999999998776
Q ss_pred h
Q psy12625 256 L 256 (612)
Q Consensus 256 ~ 256 (612)
.
T Consensus 225 ~ 225 (255)
T PRK11231 225 V 225 (255)
T ss_pred h
Confidence 5
No 117
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.4e-44 Score=360.32 Aligned_cols=212 Identities=26% Similarity=0.365 Sum_probs=181.6
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.|.. +.+.+++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~------~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQE------GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-----TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccC------CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEhh
Confidence 678999998731 11125699999999999999999999999999999999999886 6899999999864
Q ss_pred ch--H---hhc-cceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 101 DH--R---MLR-KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 101 ~~--~---~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
+. . .++ +.++|++|++.+++.+||+||+.+....+ .....+.++++.++++.+|+++..++.+++||||||
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 147 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGER 147 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 31 1 123 67999999999999999999998865432 122334456788999999999989999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||+. .+ ..+|++++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 999999999999999999999999999999999999999986 4899999999986 45 458999999999875
No 118
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-44 Score=367.36 Aligned_cols=208 Identities=25% Similarity=0.389 Sum_probs=186.0
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+
T Consensus 11 ~~l~i~~l~~~~----------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-----~~G~i~~~g~~ 75 (257)
T PRK11247 11 TPLLLNAVSKRY----------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP-----SAGELLAGTAP 75 (257)
T ss_pred CcEEEEEEEEEE----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCEE
Confidence 358999999988 456799999999999999999999999999999999999886 68999999987
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
+ ..+++.++|++|++.+++.+||+||+.+... . ..+++++++++.+||.+..++++.+||||||||++
T Consensus 76 ~---~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~ 143 (257)
T PRK11247 76 L---AEAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVA 143 (257)
T ss_pred H---HHhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 4 2456789999999999998999999987421 0 12456789999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +|+|||+++||+. .+.++||++++|++|++++.|+.+
T Consensus 144 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999999999965 5899999999986 577899999999999999988764
No 119
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-44 Score=358.10 Aligned_cols=210 Identities=25% Similarity=0.441 Sum_probs=181.5
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|++++| +++. .|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~----------~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~ 63 (211)
T cd03298 1 VRLDKIRFSY----------GEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-----QSGRVLINGVDVT 63 (211)
T ss_pred CEEEeEEEEe----------CCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEcC
Confidence 4689999987 2233 399999999999999999999999999999999886 6899999999865
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
.....++.++|++|++.+++.+|++||+.+...... .. .+..+++++++++.+|+.+..++++.+||||||||++||
T Consensus 64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia 140 (211)
T cd03298 64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALA 140 (211)
T ss_pred cCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHH
Confidence 433345789999999999999999999987543211 11 123456789999999999989999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|+++..|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999986 5899999999976 577899999999999998654
No 120
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=369.32 Aligned_cols=219 Identities=32% Similarity=0.441 Sum_probs=190.2
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||++.|. +.+.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP---------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-----TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC---------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CccEEEECCEECc
Confidence 78999999872 235699999999999999999999999999999999999886 5899999999863
Q ss_pred c----hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 101 D----HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 101 ~----~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
. ....++.++|++|++. .+...||.||+.+..... ...+++.++++.++++.+||.+..++++++|||||||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~q 144 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKK 144 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHH
Confidence 1 1235678999999963 333479999998764321 2334455667899999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|++++
T Consensus 145 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 145 RVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKE 223 (275)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999877999999999976 5778999999999999999999887
Q ss_pred hh
Q psy12625 256 LV 257 (612)
Q Consensus 256 ~~ 257 (612)
+.
T Consensus 224 ~~ 225 (275)
T PRK13639 224 VF 225 (275)
T ss_pred Hh
Confidence 64
No 121
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=8.8e-45 Score=359.86 Aligned_cols=209 Identities=27% Similarity=0.444 Sum_probs=177.8
Q ss_pred EEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch
Q psy12625 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102 (612)
Q Consensus 23 ~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~ 102 (612)
++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 ~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~~-- 64 (213)
T cd03235 2 VEDLTVSY----------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-----TSGSIRVFGKPLE-- 64 (213)
T ss_pred cccceeEE----------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CCCEEEECCccHH--
Confidence 57888877 346799999999999999999999999999999999999886 6899999998753
Q ss_pred HhhccceEEEccCCCCC--CCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 103 RMLRKESCYIMQDNLLQ--ELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 103 ~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
..++.++|++|++.+. ..+||+||+.+....... ....++..+++++++++.+|+++..++++++||||||||++|
T Consensus 65 -~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 143 (213)
T cd03235 65 -KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLL 143 (213)
T ss_pred -HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHH
Confidence 3567899999998763 338999999875432110 001123345678999999999988999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++| +++.|
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999878899999999976 578899999999886 55544
No 122
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=365.19 Aligned_cols=228 Identities=25% Similarity=0.369 Sum_probs=197.2
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||+..|.. ..+..++++||||++++||++||+|.|||||||+.++|.|++++......+|+|.++|+++.
T Consensus 2 L~v~nL~v~f~~------~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~ 75 (316)
T COG0444 2 LEVKNLSVSFPT------DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL 75 (316)
T ss_pred ceEeeeEEEEec------CCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccc
Confidence 689999999854 22356799999999999999999999999999999999999973223347899999999864
Q ss_pred ch--H---hhc-cceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHHcCCcc---ccCcccCC
Q psy12625 101 DH--R---MLR-KESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQY-SRKAKESKVDSIADSLSIST---CKNTLTKH 168 (612)
Q Consensus 101 ~~--~---~~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~lgL~~---~~~~~~~~ 168 (612)
.. + .+| +.|+||||++ .+.|.+||.+.+.-...... .. .+++.++++.++|+.+||.+ ..+.++.+
T Consensus 76 ~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe 153 (316)
T COG0444 76 SLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSYPHE 153 (316)
T ss_pred cCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc
Confidence 32 2 233 5899999996 68899999998876655422 22 35667889999999999986 56899999
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|+++|++|||.. -+.++||||+||..|++
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~i 232 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRI 232 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEE
Confidence 999999999999999999999999999999999999999999999987 7999999999986 68999999999999999
Q ss_pred EEecCccChh
Q psy12625 248 TYQGTVPGLV 257 (612)
Q Consensus 248 v~~G~~~~~~ 257 (612)
|+.|+++++.
T Consensus 233 VE~g~~~~i~ 242 (316)
T COG0444 233 VEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHh
Confidence 9999998764
No 123
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-44 Score=377.35 Aligned_cols=228 Identities=22% Similarity=0.271 Sum_probs=193.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|.. +.+...+|+||||++++||+++|+||||||||||+++|+|+++|. +.+.+|+|.++|+++
T Consensus 3 ~L~v~~l~~~~~~------~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i 75 (326)
T PRK11022 3 LLNVDKLSVHFGD------ESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDL 75 (326)
T ss_pred eEEEeCeEEEECC------CCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEEC
Confidence 5899999999832 112256999999999999999999999999999999999998742 224689999999987
Q ss_pred cch--Hh---h-ccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc---ccCcccCC
Q psy12625 100 QDH--RM---L-RKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST---CKNTLTKH 168 (612)
Q Consensus 100 ~~~--~~---~-~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~ 168 (612)
.+. +. + ++.++||+|++ .+.|.+|+.+++........ ...+++.++++.++++.+||.+ ..++++++
T Consensus 76 ~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~ 153 (326)
T PRK11022 76 QRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQ 153 (326)
T ss_pred CcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCchh
Confidence 432 22 2 24799999998 57889999998876543321 2344556778999999999974 46889999
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|||||||||+|||||+.+|++|++||||+|||+.++.+++++|+++++ .|.|+|++|||.. .+.+++|+|++|++|++
T Consensus 154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~i 232 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQV 232 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 5999999999986 57789999999999999
Q ss_pred EEecCccChh
Q psy12625 248 TYQGTVPGLV 257 (612)
Q Consensus 248 v~~G~~~~~~ 257 (612)
++.|+++++.
T Consensus 233 ve~g~~~~~~ 242 (326)
T PRK11022 233 VETGKAHDIF 242 (326)
T ss_pred EEECCHHHHh
Confidence 9999987764
No 124
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-44 Score=369.62 Aligned_cols=222 Identities=28% Similarity=0.390 Sum_probs=192.4
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++|+++.|. .+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+
T Consensus 5 ~~~l~~~nl~~~~~--------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g~ 71 (271)
T PRK13632 5 SVMIKVENVSFSYP--------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP-----QSGEIKIDGI 71 (271)
T ss_pred ceEEEEEeEEEEcC--------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCE
Confidence 44799999999872 1346799999999999999999999999999999999999886 6899999999
Q ss_pred eccch--HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 98 RLQDH--RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 98 ~~~~~--~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
++... ..+++.++|++|++. .++.+||+||+.+..... ....++.+++++++++.+||.+..++.+.+||||||
T Consensus 72 ~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 148 (271)
T PRK13632 72 TISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQK 148 (271)
T ss_pred ecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHH
Confidence 87432 346778999999974 567789999998865332 223444556789999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ ++|||+++|++. .+ ..||++++|++|+++..|++
T Consensus 149 qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~ 226 (271)
T PRK13632 149 QRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKP 226 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999876 599999999986 45 47999999999999999987
Q ss_pred cChh
Q psy12625 254 PGLV 257 (612)
Q Consensus 254 ~~~~ 257 (612)
+++.
T Consensus 227 ~~~~ 230 (271)
T PRK13632 227 KEIL 230 (271)
T ss_pred HHHh
Confidence 7653
No 125
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=369.40 Aligned_cols=221 Identities=25% Similarity=0.415 Sum_probs=191.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 11 ~l~i~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRV----------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-----SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEE----------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CCCEEEECCEeh
Confidence 69999999987 346799999999999999999999999999999999999886 689999999886
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
.. ...+++.++|++|++.+++.+|+.||+.+....... ....+...+++++++++.+|+.+..++++++||||||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 155 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQR 155 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHH
Confidence 42 234567899999998888889999999875321100 001122345678899999999988999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|+++..|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999874 899999999986 6788999999999999999998765
Q ss_pred h
Q psy12625 256 L 256 (612)
Q Consensus 256 ~ 256 (612)
.
T Consensus 235 ~ 235 (265)
T PRK10575 235 L 235 (265)
T ss_pred h
Confidence 5
No 126
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-44 Score=369.46 Aligned_cols=220 Identities=29% Similarity=0.450 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++++|++++|. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~---------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 68 (277)
T PRK13652 3 LIETRDLCYSYS---------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-----TSGSVLIRGEPI 68 (277)
T ss_pred eEEEEEEEEEeC---------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence 488999999872 134699999999999999999999999999999999999886 689999999986
Q ss_pred cc--hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QD--HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
.. ....++.++|++|++. .+...||.||+.+..... ...++..+++++++++.+||.+..++.+.+||||||||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr 145 (277)
T PRK13652 69 TKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKR 145 (277)
T ss_pred CcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHH
Confidence 43 2345678999999974 333589999998765321 23444556678999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHH
Confidence 99999999999999999999999999999999999999875 899999999986 6778999999999999999999887
Q ss_pred hh
Q psy12625 256 LV 257 (612)
Q Consensus 256 ~~ 257 (612)
..
T Consensus 225 ~~ 226 (277)
T PRK13652 225 IF 226 (277)
T ss_pred Hh
Confidence 64
No 127
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.7e-44 Score=368.21 Aligned_cols=229 Identities=22% Similarity=0.354 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|...... ...+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~~~~~~~-~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i 75 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLF-GAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-----AQGTVSFRGQDL 75 (265)
T ss_pred eEEEEeEEEEeccCccc-cccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEc
Confidence 48899999988320000 001246799999999999999999999999999999999999886 689999999986
Q ss_pred cch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCCh
Q psy12625 100 QDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg 171 (612)
... ..+++.++|++|++ .+++.+||+||+.+...... .......+++++++++.+|+. +..++.+.+|||
T Consensus 76 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 153 (265)
T TIGR02769 76 YQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLPRQLSG 153 (265)
T ss_pred cccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCH
Confidence 432 12467899999996 46678999999987543211 123334556789999999996 678999999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+.++||++++|++|++++.
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999999874 899999999976 57789999999999999999
Q ss_pred cCccChh
Q psy12625 251 GTVPGLV 257 (612)
Q Consensus 251 G~~~~~~ 257 (612)
|+++++.
T Consensus 233 g~~~~~~ 239 (265)
T TIGR02769 233 CDVAQLL 239 (265)
T ss_pred CCHHHHc
Confidence 9887654
No 128
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-44 Score=366.24 Aligned_cols=231 Identities=26% Similarity=0.343 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.|.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 7 ~l~i~~l~~~~~~--------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-----~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS--------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-----KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC--------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence 6899999998721 224699999999999999999999999999999999999886 689999999986
Q ss_pred cc--hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QD--HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
.. ....++.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..++++.+||||||||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 150 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQR 150 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHH
Confidence 43 2346778999999974 677789999998864322 12334445678899999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+. .+|++++|++|++++.|++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999864 899999999986 455 499999999999999999876
Q ss_pred hhh---HHhhcCCCCC
Q psy12625 256 LVP---YLSDFGYQCP 268 (612)
Q Consensus 256 ~~~---~f~~~g~~~p 268 (612)
..+ .+...|.++|
T Consensus 229 ~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 229 IFDHAEELTRIGLDLP 244 (269)
T ss_pred HhcCHHHHHhcCCCCC
Confidence 533 3344454443
No 129
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.2e-44 Score=361.97 Aligned_cols=220 Identities=24% Similarity=0.257 Sum_probs=186.1
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEECCEe
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEINETR 98 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~g~~ 98 (612)
|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +| .+|+|.++|++
T Consensus 1 l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----~~G~i~~~g~~ 65 (243)
T TIGR01978 1 LKIKDLHVSV----------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-----TSGTILFKGQD 65 (243)
T ss_pred CeEeeEEEEE----------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----CcceEEECCEe
Confidence 4689999987 3467999999999999999999999999999999999995 33 68999999998
Q ss_pred ccch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccC--C--CCCHHHHHHHHHHHHHHcCCc-cccCcccC-CC
Q psy12625 99 LQDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLG--N--QYSRKAKESKVDSIADSLSIS-TCKNTLTK-HL 169 (612)
Q Consensus 99 ~~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~--~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~L 169 (612)
+... .. .+..++|++|++.+++.+|++|++.+....... . ..+..+..++++++++.+||. +..++.+. +|
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 145 (243)
T TIGR01978 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGF 145 (243)
T ss_pred cCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCc
Confidence 6432 22 234599999999999999999999876432211 0 112233456789999999997 46788887 59
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-ccceeeecCCeEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM-ADYLYVLTEGYCT 248 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv 248 (612)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++||++ .+... ||++++|++|+++
T Consensus 146 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~ 224 (243)
T TIGR01978 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIV 224 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999888899999999986 56677 8999999999999
Q ss_pred EecCccCh
Q psy12625 249 YQGTVPGL 256 (612)
Q Consensus 249 ~~G~~~~~ 256 (612)
+.|++++.
T Consensus 225 ~~g~~~~~ 232 (243)
T TIGR01978 225 KSGDVELA 232 (243)
T ss_pred EecCHHHh
Confidence 99988743
No 130
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-44 Score=364.97 Aligned_cols=227 Identities=19% Similarity=0.299 Sum_probs=191.9
Q ss_pred CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625 15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94 (612)
Q Consensus 15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~ 94 (612)
+.+...|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.+
T Consensus 8 ~~~~~~l~~~~l~~~~----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 8 ATAPSKIQVRNLNFYY----------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred cCCCceEEEEEEEEEe----------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 3455679999999988 345799999999999999999999999999999999999862111136899999
Q ss_pred CCEeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCccc
Q psy12625 95 NETRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLT 166 (612)
Q Consensus 95 ~g~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~ 166 (612)
+|+++.. ...+++.++|++|++.+++ .||+||+.+...... ..+.++.+++++++++.+|+. +..++.+
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 154 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSG 154 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC
Confidence 9998642 2345778999999998887 899999987653321 233444556789999999984 4578889
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|+
T Consensus 155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~ 232 (260)
T PRK10744 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGE 232 (260)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999964 789999999976 5778999999999999
Q ss_pred EEEecCccCh
Q psy12625 247 CTYQGTVPGL 256 (612)
Q Consensus 247 iv~~G~~~~~ 256 (612)
++..|+++++
T Consensus 233 i~~~g~~~~~ 242 (260)
T PRK10744 233 LIEFGNTDTI 242 (260)
T ss_pred EEEeCCHHHH
Confidence 9999987765
No 131
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.6e-44 Score=366.77 Aligned_cols=224 Identities=25% Similarity=0.370 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|+++
T Consensus 4 ~l~~~nl~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~--~~~~G~i~~~g~~~ 71 (262)
T PRK09984 4 IIRVEKLAKTF----------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGD--KSAGSHIELLGRTV 71 (262)
T ss_pred EEEEeeEEEEe----------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCC--CCCceEEEECCEec
Confidence 58999999987 4567999999999999999999999999999999999998863 12469999999886
Q ss_pred cc-------hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-----CCCHHHHHHHHHHHHHHcCCccccCcccC
Q psy12625 100 QD-------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-----QYSRKAKESKVDSIADSLSISTCKNTLTK 167 (612)
Q Consensus 100 ~~-------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~~~ 167 (612)
.. ....++.++|++|++.+++.+||+||+.+......+. ....++.+++++++++.+|+.+..++.++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS 151 (262)
T ss_pred ccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 32 1234678999999999999999999998754211000 01123345678999999999988999999
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.+.||++++|++|+
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGH 230 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999986 5899999999986 5788999999999999
Q ss_pred EEEecCccCh
Q psy12625 247 CTYQGTVPGL 256 (612)
Q Consensus 247 iv~~G~~~~~ 256 (612)
+++.|++++.
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999987653
No 132
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-44 Score=364.19 Aligned_cols=223 Identities=17% Similarity=0.268 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++++|++++| +++++|+|+|+++++||+++|+|||||||||||++|+|+.+|....+.+|+|.++|+++
T Consensus 4 ~l~i~~v~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~ 73 (258)
T PRK14241 4 RIDVKDLNIYY----------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL 73 (258)
T ss_pred cEEEeeEEEEE----------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence 58899999988 34579999999999999999999999999999999999987421113689999999886
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 171 (612)
.. ...+++.++|++|++.+++.+||+||+.+...... ..++++.+++++++++.+|+. +..++.+.+|||
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (258)
T PRK14241 74 YGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSG 151 (258)
T ss_pred cccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence 32 23456789999999999999999999988654321 112344556788999999984 467888999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec------CC
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT------EG 245 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G 245 (612)
||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|+ +|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCc
Confidence 999999999999999999999999999999999999999999964 689999999976 5788999999996 79
Q ss_pred eEEEecCccCh
Q psy12625 246 YCTYQGTVPGL 256 (612)
Q Consensus 246 ~iv~~G~~~~~ 256 (612)
++++.|++++.
T Consensus 230 ~i~~~~~~~~~ 240 (258)
T PRK14241 230 RLVEIDDTEKI 240 (258)
T ss_pred eEEecCCHHHH
Confidence 99999988765
No 133
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-44 Score=368.25 Aligned_cols=223 Identities=24% Similarity=0.342 Sum_probs=192.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 6 ~~l~i~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGY----------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-----AHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEE----------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CCcEEEECCEE
Confidence 379999999988 446799999999999999999999999999999999999886 68999999998
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
+.. ....++.++|++|++.+++.+|++||+.+...-..+. ....+..+++++++++.+||.+..++.+.+|||||||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q 150 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQ 150 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHH
Confidence 643 2344568999999999999999999998742111000 0011234567889999999999899999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++. .+.++||++++|++|++++.|+++
T Consensus 151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999987 4899999999986 688999999999999999999887
Q ss_pred Chh
Q psy12625 255 GLV 257 (612)
Q Consensus 255 ~~~ 257 (612)
++.
T Consensus 230 ~~~ 232 (265)
T PRK10253 230 EIV 232 (265)
T ss_pred HHh
Confidence 653
No 134
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6e-44 Score=375.64 Aligned_cols=228 Identities=23% Similarity=0.310 Sum_probs=194.1
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.|.. +.+...+|+|||+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|++
T Consensus 11 ~~L~i~~l~~~~~~------~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~--~~sG~I~~~G~~ 82 (330)
T PRK09473 11 ALLDVKDLRVTFST------PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG--RIGGSATFNGRE 82 (330)
T ss_pred ceEEEeCeEEEEec------CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC--CCCeEEEECCEE
Confidence 46999999999842 1234579999999999999999999999999999999999998621 248999999998
Q ss_pred ccch--H---hhc-cceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc---ccCcccC
Q psy12625 99 LQDH--R---MLR-KESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST---CKNTLTK 167 (612)
Q Consensus 99 ~~~~--~---~~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~ 167 (612)
+... . .+| +.++||+|++ .+.|.+|+.+++........ ..++.+..+++.++++.+||.+ ..++++.
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~ 160 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPH 160 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence 7432 2 223 5799999998 68899999999977654321 2345556678899999999975 3477899
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
+|||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||+. .+.+++|++++|++|+
T Consensus 161 ~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ 239 (330)
T PRK09473 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGR 239 (330)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999874 999999999986 5778999999999999
Q ss_pred EEEecCccChh
Q psy12625 247 CTYQGTVPGLV 257 (612)
Q Consensus 247 iv~~G~~~~~~ 257 (612)
+++.|+++++.
T Consensus 240 ive~g~~~~i~ 250 (330)
T PRK09473 240 TMEYGNARDVF 250 (330)
T ss_pred EEEECCHHHHH
Confidence 99999988764
No 135
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.5e-44 Score=365.62 Aligned_cols=220 Identities=26% Similarity=0.389 Sum_probs=189.8
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSA----------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP-----DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEE----------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----CCCEEEECCEEcc
Confidence 6789999987 446799999999999999999999999999999999999886 5899999998864
Q ss_pred ch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 101 DH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 101 ~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
.. ...++.++|++|++.+++.+||+||+.+....... ......+..+++.++++.+|+.+..++.+.+||||||||+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 146 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRV 146 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 32 34456799999998888889999999875311000 0111123345788999999999989999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
+||+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+.||++++|++|+++..|++++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999999999999999999877899999999986 67789999999999999999987754
No 136
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-44 Score=362.91 Aligned_cols=223 Identities=20% Similarity=0.271 Sum_probs=187.7
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++....+.+|+|.++|++
T Consensus 5 ~~l~~~~l~~~~----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 74 (253)
T PRK14242 5 PKMEARGLSFFY----------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN 74 (253)
T ss_pred cEEEEeeeEEEE----------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEE
Confidence 358999999988 3457999999999999999999999999999999999986410001368999999998
Q ss_pred ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCC
Q psy12625 99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLS 170 (612)
Q Consensus 99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LS 170 (612)
+.. ....++.++|++|++.+++ .||+||+.+....+. ....+..+++++++++.+|+.+ ..++.+.+||
T Consensus 75 i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 151 (253)
T PRK14242 75 IYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESALGLS 151 (253)
T ss_pred ccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCC
Confidence 642 1345678999999998888 599999988754321 1123344567889999999853 4678899999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|+++..
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999986 57789999999999999999
Q ss_pred cCccCh
Q psy12625 251 GTVPGL 256 (612)
Q Consensus 251 G~~~~~ 256 (612)
|+++++
T Consensus 230 g~~~~~ 235 (253)
T PRK14242 230 GPTEQI 235 (253)
T ss_pred CCHHHH
Confidence 987654
No 137
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.3e-44 Score=361.02 Aligned_cols=214 Identities=26% Similarity=0.361 Sum_probs=186.3
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||++.| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYY----------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-----KSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEe----------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCEEEECCEECC
Confidence 4689999987 446799999999999999999999999999999999999886 6899999998864
Q ss_pred ch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC-CccccCcccCCCChhhhhH
Q psy12625 101 DH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-ISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 101 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerqR 176 (612)
.. ...++.++|++|++.+++.+|++||+.+..... ... .++.++++++.++ +.+..++.+.+||||||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qr 139 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQ 139 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHH
Confidence 32 223567999999999999999999998865432 111 2334577788887 6777899999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|++++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999874 899999999976 6778999999999999999998876
Q ss_pred h
Q psy12625 256 L 256 (612)
Q Consensus 256 ~ 256 (612)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
No 138
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-44 Score=365.49 Aligned_cols=225 Identities=20% Similarity=0.268 Sum_probs=190.2
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||++.| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|....+.+|+|.++|+
T Consensus 17 ~~~l~~~nl~~~~----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~ 86 (267)
T PRK14235 17 EIKMRARDVSVFY----------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGE 86 (267)
T ss_pred CceEEEEeEEEEE----------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 3479999999988 446799999999999999999999999999999999999874211236899999999
Q ss_pred eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCC
Q psy12625 98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHL 169 (612)
Q Consensus 98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~L 169 (612)
++.. ...+++.++|++|++.+++. ||.||+.+....+. ...++.+.+++++++++.+|+.+ ..++.+.+|
T Consensus 87 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 164 (267)
T PRK14235 87 DIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGL 164 (267)
T ss_pred ECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccC
Confidence 8642 23456789999999988874 99999988754321 01123334567889999999964 467889999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|+++.
T Consensus 165 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 689999999976 5778999999999999999
Q ss_pred ecCccCh
Q psy12625 250 QGTVPGL 256 (612)
Q Consensus 250 ~G~~~~~ 256 (612)
.|+++++
T Consensus 243 ~g~~~~~ 249 (267)
T PRK14235 243 VGDTEKM 249 (267)
T ss_pred eCCHHHH
Confidence 9987655
No 139
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.9e-44 Score=382.26 Aligned_cols=228 Identities=21% Similarity=0.304 Sum_probs=195.4
Q ss_pred EEEEeEEEEEEeecc--------------ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCC
Q psy12625 21 LLFQDISYSALYYDT--------------HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE 86 (612)
Q Consensus 21 l~~~~ls~~~~~~~~--------------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~ 86 (612)
|+++||.+-+-..+. ..++++...+|+|+||++++||+++|+||||||||||+++|+|+++|
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p---- 76 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV---- 76 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----
Confidence 467888877643220 01234567799999999999999999999999999999999999986
Q ss_pred CceeEEEECCE----eccc--hH---hh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc
Q psy12625 87 TNSGYIEINET----RLQD--HR---ML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156 (612)
Q Consensus 87 ~~~G~I~~~g~----~~~~--~~---~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l 156 (612)
.+|+|.++|+ ++.. .. .. ++.++||+|++.+++.+||+||+.++.... ..++.+.+++++++++.+
T Consensus 77 -~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~v 152 (382)
T TIGR03415 77 -SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELV 152 (382)
T ss_pred -CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHc
Confidence 6899999996 3321 11 22 358999999999999999999999876443 234556677899999999
Q ss_pred CCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhc
Q psy12625 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNM 235 (612)
Q Consensus 157 gL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~ 235 (612)
||++..++++.+|||||||||+|||||+.+|+||||||||+|||+.++.++.+.|++++++ |+|||++|||++ ++.++
T Consensus 153 gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l 231 (382)
T TIGR03415 153 GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKI 231 (382)
T ss_pred CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999874 999999999976 67899
Q ss_pred ccceeeecCCeEEEecCccChh
Q psy12625 236 ADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 236 ~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
+|++++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999988764
No 140
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-44 Score=359.26 Aligned_cols=217 Identities=26% Similarity=0.408 Sum_probs=191.4
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++++ +.+.+++|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFY----------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-----TSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEe----------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEcC
Confidence 4689999987 446799999999999999999999999999999999999986 5799999999865
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
.....++.++|++|++.+++.+|++||+.+..... .......+++++++++.+|+.+..++.+.+||||||||++||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la 142 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIA 142 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 43334678999999999999999999998865443 123344456788999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+.++.
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999874 899999999975 57889999999999999999876554
No 141
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-44 Score=368.52 Aligned_cols=224 Identities=25% Similarity=0.340 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.|.. ..+++|+|+|+++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|+++
T Consensus 5 ~l~i~~l~~~~~~--------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~--g~~G~i~i~g~~~ 74 (282)
T PRK13640 5 IVEFKHVSFTYPD--------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD--NPNSKITVDGITL 74 (282)
T ss_pred eEEEEEEEEEcCC--------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCC--CCCcEEEECCEEC
Confidence 6899999998721 23569999999999999999999999999999999999998631 1249999999987
Q ss_pred cch--HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QDH--RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~~--~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
... ...++.+||++|++. .++..||+||+.+..... ..++++.+++++++++.+||.+..++++.+||||||||
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQR 151 (282)
T ss_pred CcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHH
Confidence 432 345678999999974 667799999998764322 23455566789999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+ ..||++++|++|++++.|++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 229 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVE 229 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999874 899999999986 45 5799999999999999999887
Q ss_pred hhh
Q psy12625 256 LVP 258 (612)
Q Consensus 256 ~~~ 258 (612)
+..
T Consensus 230 ~~~ 232 (282)
T PRK13640 230 IFS 232 (282)
T ss_pred Hhc
Confidence 643
No 142
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-44 Score=360.30 Aligned_cols=216 Identities=26% Similarity=0.414 Sum_probs=186.9
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||+++| +++. .|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~----------~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLY----------HHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP-----ASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEE----------CCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCeecC
Confidence 7899999988 2222 389999999999999999999999999999999886 6899999999865
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
.....++.++|++|++.+++.+|+.||+.+...... .. .+..+++++++++.+|+++..++++.+||||||||++||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 141 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALA 141 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHH
Confidence 432235679999999999999999999987532111 11 223456789999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|+++.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+.||++++|++|++++.|++++..
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999976 4899999999986 577899999999999999999876553
No 143
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-45 Score=362.65 Aligned_cols=231 Identities=21% Similarity=0.278 Sum_probs=204.2
Q ss_pred eeEEEEeEEEEEEeeccc-------c-------ccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCC
Q psy12625 19 FNLLFQDISYSALYYDTH-------S-------YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~-------~-------~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~ 84 (612)
..|+++|+++-+-..... . .+.+...-++|+|++++.||+..|||-||||||||+++|.++++|
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-- 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-- 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--
Confidence 468899999877432210 0 011223468999999999999999999999999999999999987
Q ss_pred CCCceeEEEECCEeccch-----Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC
Q psy12625 85 TETNSGYIEINETRLQDH-----RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158 (612)
Q Consensus 85 ~~~~~G~I~~~g~~~~~~-----~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 158 (612)
++|+|+++|+++... .. .|+++++|||+..|+|+.||.||..|+..++ ..+++++++++.++|+.+||
T Consensus 81 ---t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL 154 (386)
T COG4175 81 ---TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGL 154 (386)
T ss_pred ---CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCc
Confidence 689999999987432 22 3578999999999999999999999998776 57889999999999999999
Q ss_pred ccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccc
Q psy12625 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMAD 237 (612)
Q Consensus 159 ~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D 237 (612)
+.+.++++.+|||||||||.|||||+++|+||++|||+|+|||--+.++-+.|.+|.+ -++||+++|||.+ +.+++.|
T Consensus 155 ~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~ 233 (386)
T COG4175 155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGD 233 (386)
T ss_pred hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999976 5899999999986 6899999
Q ss_pred ceeeecCCeEEEecCccChhh
Q psy12625 238 YLYVLTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 238 ~v~~L~~G~iv~~G~~~~~~~ 258 (612)
||.+|++|+++..|+|+|++.
T Consensus 234 rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 234 RIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred eEEEecCCeEEEeCCHHHHHc
Confidence 999999999999999999864
No 144
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.8e-44 Score=354.09 Aligned_cols=211 Identities=26% Similarity=0.443 Sum_probs=183.8
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
++++||++.| + .+++|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++.
T Consensus 1 ~~~~~l~~~~----------~--~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~ 63 (213)
T TIGR01277 1 LALDKVRYEY----------E--HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP-----ASGSIKVNDQSHT 63 (213)
T ss_pred CeEEeeeEEe----------C--CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEcc
Confidence 4689999987 2 146899999999999999999999999999999999886 6899999999865
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
+....++.++|++|++.+++.+|+.||+.+...... . .+...+++++++++.+|+++..++.+.+||||||||++||
T Consensus 64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 140 (213)
T TIGR01277 64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALA 140 (213)
T ss_pred cCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHH
Confidence 433456789999999999999999999987543211 1 1222356788999999999989999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
|+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+.+.||++++|++|+++..|+
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999999986 4899999999975 5778999999999999998875
No 145
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.5e-44 Score=358.09 Aligned_cols=210 Identities=30% Similarity=0.471 Sum_probs=186.1
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~l~~v~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRF----------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-----TSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEE----------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEecc
Confidence 4689999887 346799999999999999999999999999999999999886 6899999998854
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
.. . ++.++|++|++.+++.+|++||+.+..... ... ++++.++++.+|+++..++.+.+||||||||++||
T Consensus 66 ~~-~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~la 136 (223)
T TIGR03740 66 RK-D-LHKIGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIA 136 (223)
T ss_pred cc-c-cccEEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHH
Confidence 32 1 357999999999999999999998765432 111 24678899999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
||++.+|++++|||||+|||+.++..+.+.|++++++|.|||++|||+. .+.+.||++++|++|++++.|++.+
T Consensus 137 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 137 IALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999999999999878999999999986 5778999999999999999998753
No 146
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-44 Score=368.79 Aligned_cols=225 Identities=24% Similarity=0.306 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++|++++|... .+.+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~~~----~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESN----EESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-----SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCC----CCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEec
Confidence 58999999998320 000135799999999999999999999999999999999999986 689999999987
Q ss_pred cch---HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 100 QDH---RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 100 ~~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
.+. ...++.++|++|++. .+...||.||+.+..... ..++.+.+++++++++.+||.+..++++++|||||||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q 151 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQ 151 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH
Confidence 432 345778999999974 223469999998865432 2334555677899999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. .||++++|++|+++..|+++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~ 229 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDSGKVVMEGTPK 229 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999976 5999999999987 454 49999999999999999988
Q ss_pred Chhh
Q psy12625 255 GLVP 258 (612)
Q Consensus 255 ~~~~ 258 (612)
++..
T Consensus 230 ~~~~ 233 (280)
T PRK13633 230 EIFK 233 (280)
T ss_pred HHhc
Confidence 7643
No 147
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5e-44 Score=360.35 Aligned_cols=218 Identities=25% Similarity=0.419 Sum_probs=192.1
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 1 i~i~~l~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRF----------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-----DSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEE----------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEcC
Confidence 4689999987 345799999999999999999999999999999999999876 5899999999865
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
.....++.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.+++||||||||++||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la 142 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALA 142 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence 43334678999999999999999999998765432 122334456789999999999889999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+.++..
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999875 899999999986 578899999999999999999877653
No 148
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-44 Score=362.33 Aligned_cols=213 Identities=29% Similarity=0.440 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSS----------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP-----TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEe----------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEh
Confidence 58999999987 446799999999999999999999999999999999999886 689999999986
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhhH
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqR 176 (612)
.. ....++.++|++|++.+++ .||+||+.+....+ . ..+++++++++.+|+. +..++.+.+||||||||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 139 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQR 139 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 43 2345678999999998887 69999988753321 1 1235678899999997 57889999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|++|+++..|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999987 4999999999986 5788999999999999999998776
Q ss_pred h
Q psy12625 256 L 256 (612)
Q Consensus 256 ~ 256 (612)
+
T Consensus 219 ~ 219 (241)
T PRK14250 219 F 219 (241)
T ss_pred H
Confidence 5
No 149
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=8.5e-44 Score=356.46 Aligned_cols=215 Identities=25% Similarity=0.361 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++|.. +...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~~~------~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-----~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQ------GEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG-----SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccC------CCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CCeeEEECCEEc
Confidence 6899999998721 00113599999999999999999999999999999999999886 689999999986
Q ss_pred cch--H---hh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625 100 QDH--R---ML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 100 ~~~--~---~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 173 (612)
... . .. ++.++|++|++.+++.+|+.||+.+....+ .....+.+++++++++.+|+.+..++++.+|||||
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge 151 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGE 151 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHH
Confidence 432 1 12 357999999999999999999998765332 12334456788999999999998999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++||+. .+ +.+|++++|++|++++.
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999976 4899999999986 45 56999999999998753
No 150
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-44 Score=375.12 Aligned_cols=230 Identities=19% Similarity=0.245 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|.. +.+.+.+|+|||++|++||+++|+|+||||||||+++|+|+.+|. ..+.+|+|.++|+++
T Consensus 3 ~L~v~~l~~~y~~------~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i 75 (330)
T PRK15093 3 LLDIRNLTIEFKT------SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDL 75 (330)
T ss_pred eEEEeeeEEEEeC------CCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEEC
Confidence 5899999999843 113457999999999999999999999999999999999998742 124689999999987
Q ss_pred cch--Hh----hccceEEEccCCC--CCCCCCHHHHHHHHHHhc-c-CCC-CCHHHHHHHHHHHHHHcCCcc---ccCcc
Q psy12625 100 QDH--RM----LRKESCYIMQDNL--LQELLTVEESLTVAAHLK-L-GNQ-YSRKAKESKVDSIADSLSIST---CKNTL 165 (612)
Q Consensus 100 ~~~--~~----~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~-~-~~~-~~~~~~~~~v~~~l~~lgL~~---~~~~~ 165 (612)
.+. .. .++.++||+|++. +.+.+||.+++....... . +.. ....+.++++.++++.+||.+ ..+++
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 155 (330)
T PRK15093 76 LRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF 155 (330)
T ss_pred CcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 432 21 2357999999985 678899999997643211 0 000 112334567899999999975 45889
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+.+|||||||||+||+||+.+|++||+||||+|||+.++.+++++|+++++ .|.|||++|||.. .+.++||++++|++
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~ 234 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYC 234 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999999987 4999999999976 67889999999999
Q ss_pred CeEEEecCccChh
Q psy12625 245 GYCTYQGTVPGLV 257 (612)
Q Consensus 245 G~iv~~G~~~~~~ 257 (612)
|++++.|+++++.
T Consensus 235 G~ive~g~~~~i~ 247 (330)
T PRK15093 235 GQTVETAPSKELV 247 (330)
T ss_pred CEEEEECCHHHHH
Confidence 9999999887653
No 151
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-44 Score=379.88 Aligned_cols=209 Identities=27% Similarity=0.419 Sum_probs=185.3
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|++ ||+++| +++. + |+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~-~l~k~~----------~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p-----~~G~I~~~g~~~~ 63 (352)
T PRK11144 2 LEL-NFKQQL----------GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP-----QKGRIVLNGRVLF 63 (352)
T ss_pred eEE-EEEEEe----------CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcc
Confidence 566 888887 3333 3 89999999999999999999999999999999886 6899999998864
Q ss_pred c------hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 101 D------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 101 ~------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
+ ....++.++|++|++.+++.+||+||+.++.. ...+++++++++.+||++..++++++||||||
T Consensus 64 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~ 134 (352)
T PRK11144 64 DAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEK 134 (352)
T ss_pred ccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHH
Confidence 3 12346789999999999999999999987532 11345688999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
|||+|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++|||+. ++.++||++++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999875 899999999986 68899999999999999999998
Q ss_pred cChh
Q psy12625 254 PGLV 257 (612)
Q Consensus 254 ~~~~ 257 (612)
+++.
T Consensus 214 ~~i~ 217 (352)
T PRK11144 214 EEVW 217 (352)
T ss_pred HHHH
Confidence 8764
No 152
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=360.47 Aligned_cols=221 Identities=20% Similarity=0.279 Sum_probs=187.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC---CCCCCCCceeEEEEC
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR---RPKKTETNSGYIEIN 95 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~---~p~~~~~~~G~I~~~ 95 (612)
..|+++|+++.| +++++|+|+|+++++||+++|+||||||||||+|+|+|+. +| .+.+|+|.++
T Consensus 2 ~~l~~~~~~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~~~~G~i~~~ 68 (250)
T PRK14245 2 VKIDARDVNFWY----------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA---TRLEGEIRID 68 (250)
T ss_pred cEEEEEEEEEEE----------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC---CCCceEEEEC
Confidence 468999999987 4467999999999999999999999999999999999973 32 1248999999
Q ss_pred CEeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccC
Q psy12625 96 ETRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTK 167 (612)
Q Consensus 96 g~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~ 167 (612)
|+++.. ....++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+|+.+ ..++.+.
T Consensus 69 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 145 (250)
T PRK14245 69 GRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESAF 145 (250)
T ss_pred CEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcc
Confidence 998643 1345678999999998887 699999988654321 1122334567889999999853 4678899
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++ +++|||+++|++. .+.+.||++++|++|++
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~ 223 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEM 223 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999995 4789999999986 57789999999999999
Q ss_pred EEecCccChh
Q psy12625 248 TYQGTVPGLV 257 (612)
Q Consensus 248 v~~G~~~~~~ 257 (612)
++.|+++++.
T Consensus 224 ~~~~~~~~~~ 233 (250)
T PRK14245 224 VEYDDTKKIF 233 (250)
T ss_pred EEECCHHHHh
Confidence 9999888764
No 153
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-44 Score=369.17 Aligned_cols=223 Identities=22% Similarity=0.336 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++|... ....+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~i~nl~~~~~~~-----~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKK-----TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS-----ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCC-----CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEEc
Confidence 58999999988210 00013599999999999999999999999999999999999886 689999999886
Q ss_pred cc-------hHhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCC
Q psy12625 100 QD-------HRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHL 169 (612)
Q Consensus 100 ~~-------~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~L 169 (612)
.. ...+++.++|++|++. +++ .||+||+.+..... ....++..++++++++.++|. +..++.+++|
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~L 151 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFEL 151 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhhC
Confidence 31 2345678999999973 343 69999998865321 123344456788999999994 6789999999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.++||++++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999976 5899999999976 578899999999999999
Q ss_pred EecCccChh
Q psy12625 249 YQGTVPGLV 257 (612)
Q Consensus 249 ~~G~~~~~~ 257 (612)
+.|++++..
T Consensus 231 ~~g~~~~~~ 239 (289)
T PRK13645 231 SIGSPFEIF 239 (289)
T ss_pred EeCCHHHHh
Confidence 999877653
No 154
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=363.09 Aligned_cols=228 Identities=22% Similarity=0.300 Sum_probs=193.7
Q ss_pred CCCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE
Q psy12625 14 SPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93 (612)
Q Consensus 14 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~ 93 (612)
.+.....|+++||++.| +++++|+|+|+++++||+++|+|||||||||||++|+|+.+|....+.+|+|.
T Consensus 14 ~~~~~~~l~~~nl~~~~----------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 14 FPEEEIALSTKDLHVYY----------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred cCCCCeEEEEeeEEEEE----------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 35566689999999987 45679999999999999999999999999999999999986421124689999
Q ss_pred ECCEeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcc
Q psy12625 94 INETRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTL 165 (612)
Q Consensus 94 ~~g~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ 165 (612)
++|+++.. ....++.++|++|++.+++ .||+||+.++.... + ...+.+.++++.++++.++|. +..++.
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~ 160 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLHKS 160 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhcCC
Confidence 99998642 1345778999999998887 69999998865332 1 123344556788999999985 456888
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
+++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.++||++++|++|
T Consensus 161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G 238 (267)
T PRK14237 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLG 238 (267)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999999999964 789999999986 578899999999999
Q ss_pred eEEEecCccCh
Q psy12625 246 YCTYQGTVPGL 256 (612)
Q Consensus 246 ~iv~~G~~~~~ 256 (612)
++++.|++++.
T Consensus 239 ~i~~~g~~~~~ 249 (267)
T PRK14237 239 DLIEYDKTRNI 249 (267)
T ss_pred EEEEeCCHHHH
Confidence 99999988765
No 155
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-44 Score=330.72 Aligned_cols=214 Identities=26% Similarity=0.389 Sum_probs=191.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++++++.+.. ..+...||++|++.+++||-++|+|||||||||||-+++|+..| ++|+|.+.|+++
T Consensus 6 ii~~~~l~ktvg~------~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-----ssGeV~l~G~~L 74 (228)
T COG4181 6 IIEVHHLSKTVGQ------GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP-----SSGEVRLLGQPL 74 (228)
T ss_pred eeehhhhhhhhcC------CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC-----CCceEEEcCcch
Confidence 5888999988733 34567899999999999999999999999999999999999886 689999999987
Q ss_pred cch-----Hhh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625 100 QDH-----RML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 100 ~~~-----~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 173 (612)
.+. ..+ .+.+|+|||...+.|++|..||+...+.++-. +..+..+.+.+.++.+||.+..+.++++|||||
T Consensus 75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGE 151 (228)
T COG4181 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGE 151 (228)
T ss_pred hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCccccCchH
Confidence 532 223 36899999999999999999999999887632 234456678899999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.+ .|+|.|++||||. +...|||.+-|.+|+++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999999976 6999999999984 578999999999999874
No 156
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=8.9e-44 Score=364.74 Aligned_cols=228 Identities=22% Similarity=0.330 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++|..... ..+.+.+++|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~-~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG-WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----TSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC-cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----CCCEEEECCEEC
Confidence 5899999999831000 0001235799999999999999999999999999999999999986 689999999986
Q ss_pred cch--HhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhh
Q psy12625 100 QDH--RMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQK 174 (612)
Q Consensus 100 ~~~--~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGer 174 (612)
... ...++.++|++|++. +++.+|+.|++.+...... .....+.+++++++++.+||. +..++.+.+||||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 155 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQK 155 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHH
Confidence 421 233467999999975 5678899999987654432 123344456789999999994 677889999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+..+||++++|++|++++.|++
T Consensus 156 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 234 (267)
T PRK15112 156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999999999999987 4899999999986 67889999999999999999887
Q ss_pred cCh
Q psy12625 254 PGL 256 (612)
Q Consensus 254 ~~~ 256 (612)
++.
T Consensus 235 ~~~ 237 (267)
T PRK15112 235 ADV 237 (267)
T ss_pred HHH
Confidence 654
No 157
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=359.89 Aligned_cols=223 Identities=21% Similarity=0.347 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+++|+|.++|+++
T Consensus 4 ~l~~~nl~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 73 (252)
T PRK14256 4 KVKLEQLNVHF----------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73 (252)
T ss_pred EEEEEEEEEEe----------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEc
Confidence 48999999988 34679999999999999999999999999999999999986210112589999999986
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSg 171 (612)
.. ...+++.++|++|++.+++.+|++||+.+..... ......+.+++++++++.+|+.+ ..++.+++|||
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (252)
T PRK14256 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSG 151 (252)
T ss_pred ccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCH
Confidence 42 1345778999999999999999999998764332 11223344567889999999853 45778999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.++||++++|++|+++..|
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 589999999976 677899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
++++.
T Consensus 230 ~~~~~ 234 (252)
T PRK14256 230 ETKKI 234 (252)
T ss_pred CHHHH
Confidence 87765
No 158
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=357.37 Aligned_cols=216 Identities=29% Similarity=0.436 Sum_probs=189.3
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++ +|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~----------~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-----~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDW----------KEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-----DSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEe----------CCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----CceEEEECCEEcC
Confidence 4678999887 333 89999999999999999999999999999999999886 6899999999865
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
.....++.++|++|++.+++.+|+.||+.+..... .....+.++.+.++++.+||.+..++++.+||||||||++||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 141 (235)
T cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141 (235)
T ss_pred cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHH
Confidence 43234678999999999999999999998764332 123344556788999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
|||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|++++.
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999764 999999999986 57889999999999999999987654
No 159
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-44 Score=339.90 Aligned_cols=222 Identities=25% Similarity=0.391 Sum_probs=194.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+.+||||+. ..|.+|++||++++|||+++|+||||||||||||.|+|...| .+|++.+||.++
T Consensus 1 mi~a~nls~~~----------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-----~~G~v~~~g~~l 65 (259)
T COG4559 1 MIRAENLSYSL----------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-----DSGEVTLNGVPL 65 (259)
T ss_pred CeeeeeeEEEe----------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC-----CCCeEeeCCcCh
Confidence 47889999987 678899999999999999999999999999999999999886 689999999987
Q ss_pred cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
... .++.+.-+.+||+..+-...||+|.+.++..-.. ......+.++.+++.|+..++.+.+.+....|||||||||
T Consensus 66 ~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRV 144 (259)
T COG4559 66 NSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRV 144 (259)
T ss_pred hhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHH
Confidence 543 4556778999999887666899999999753221 1111234556689999999999999999999999999999
Q ss_pred HHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 178 SIALELLS------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 178 ~ia~aL~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
.+||.|+. ++++|+||||||.||...+..++++.++++++|..|+++.||.+. ...+||||++|++||++..|
T Consensus 145 qlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~g 223 (259)
T COG4559 145 QLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVIASG 223 (259)
T ss_pred HHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEeecC
Confidence 99999985 455899999999999999999999999999999999999999985 67899999999999999999
Q ss_pred CccChhh
Q psy12625 252 TVPGLVP 258 (612)
Q Consensus 252 ~~~~~~~ 258 (612)
+|+++.+
T Consensus 224 ~p~~vlt 230 (259)
T COG4559 224 SPQDVLT 230 (259)
T ss_pred CHHHhcC
Confidence 9998764
No 160
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=360.78 Aligned_cols=222 Identities=20% Similarity=0.273 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+++
T Consensus 12 ~l~i~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~ 81 (259)
T PRK14274 12 VYQINGMNLWY----------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81 (259)
T ss_pred eEEEeeEEEEE----------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEc
Confidence 69999999987 44679999999999999999999999999999999999986310112589999999986
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 171 (612)
.. ...+++.++|++|++.+++. ||+||+.+...... ...+++.+++++++++.+|+. +..++.+++|||
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~ 158 (259)
T PRK14274 82 LKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSG 158 (259)
T ss_pred cccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH
Confidence 42 23456789999999988885 99999987643321 112344456788899999985 346888999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|+++|++. .+.+.||++++|++|+++..|
T Consensus 159 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 159 GQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999975 789999999986 678899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
+++++
T Consensus 237 ~~~~~ 241 (259)
T PRK14274 237 DTNKM 241 (259)
T ss_pred CHHHH
Confidence 88765
No 161
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=8.8e-44 Score=378.45 Aligned_cols=210 Identities=27% Similarity=0.428 Sum_probs=184.9
Q ss_pred eEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--
Q psy12625 25 DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-- 102 (612)
Q Consensus 25 ~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-- 102 (612)
||+++| +++. + |+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++...
T Consensus 4 ~l~~~~----------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p-----~~G~I~~~g~~i~~~~~ 66 (354)
T TIGR02142 4 RFSKRL----------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP-----DEGEIVLNGRTLFDSRK 66 (354)
T ss_pred EEEEEE----------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECccCcc
Confidence 777776 3344 4 99999999999999999999999999999999986 689999999986421
Q ss_pred ----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 103 ----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 103 ----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
...++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||.+..++++.+|||||||||+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRva 141 (354)
T TIGR02142 67 GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVA 141 (354)
T ss_pred ccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 234678999999999999999999998865321 12334567899999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||+. ++..++|++++|++|+++..|+++++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 899999999986 678899999999999999999887654
No 162
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=359.04 Aligned_cols=224 Identities=19% Similarity=0.285 Sum_probs=189.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|++
T Consensus 3 ~~l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~ 72 (251)
T PRK14270 3 IKMESKNLNLWY----------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN 72 (251)
T ss_pred cEEEEEEeEEEE----------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEe
Confidence 468999999987 3467999999999999999999999999999999999998742111368999999998
Q ss_pred ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625 99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS 170 (612)
Q Consensus 99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS 170 (612)
+.. ....++.++|++|++.+++ .|++||+.+...... .....+.+++++++++.+|+. +..++.+.+||
T Consensus 73 i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 149 (251)
T PRK14270 73 IYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLS 149 (251)
T ss_pred cccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCC
Confidence 642 1245678999999999887 899999988654321 112334456788899999874 45788899999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.
T Consensus 150 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999976 589999999975 67889999999999999999
Q ss_pred cCccChh
Q psy12625 251 GTVPGLV 257 (612)
Q Consensus 251 G~~~~~~ 257 (612)
|+++++.
T Consensus 228 ~~~~~~~ 234 (251)
T PRK14270 228 NKTEKIF 234 (251)
T ss_pred CCHHHHh
Confidence 9887653
No 163
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=9.7e-44 Score=357.99 Aligned_cols=205 Identities=28% Similarity=0.431 Sum_probs=178.8
Q ss_pred ccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch-HhhccceEEEc-cC
Q psy12625 38 YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIM-QD 115 (612)
Q Consensus 38 ~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~-Q~ 115 (612)
++++.+++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++... ..+++.++|++ |+
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-----~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~ 103 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-----TSGEVRVAGLVPWKRRKKFLRRIGVVFGQK 103 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----CceEEEECCEEccccchhhcccEEEEcCCc
Confidence 344667899999999999999999999999999999999999886 689999999875322 34567899998 55
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC
Q psy12625 116 NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP 195 (612)
Q Consensus 116 ~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP 195 (612)
+.+++.+|++||+.+..... ....++..++++++++.+|+.+..++++.+||||||||++||++|+.+|++++||||
T Consensus 104 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 104 TQLWWDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred cccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 67888899999998865442 223344556788999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 196 TTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 196 tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|+|||+.++..+.+.|+++++ .++|||+++|++. .+.++||++++|++|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999976 4899999999986 578899999999999998765
No 164
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=363.07 Aligned_cols=224 Identities=20% Similarity=0.315 Sum_probs=188.4
Q ss_pred CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
+...|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|
T Consensus 10 ~~~~l~i~nl~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 10 KNIIISLQNVTISY----------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred CCceEEEEeEEEEE----------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 34579999999988 44679999999999999999999999999999999999976311113689999999
Q ss_pred Eeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC----ccccCcccCC
Q psy12625 97 TRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI----STCKNTLTKH 168 (612)
Q Consensus 97 ~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~ 168 (612)
+++.. ...+++.++|++|++.+++ .||+||+.+....+ ... ...+++++++++.+++ ++..++++.+
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 154 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKLNESGYS 154 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCccc
Confidence 88631 2345678999999998888 59999998875432 122 2234567788888876 3457888999
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC----
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE---- 244 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~---- 244 (612)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~ 232 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVE 232 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999964 689999999986 68899999999996
Q ss_pred -------CeEEEecCccChh
Q psy12625 245 -------GYCTYQGTVPGLV 257 (612)
Q Consensus 245 -------G~iv~~G~~~~~~ 257 (612)
|++++.|+++++.
T Consensus 233 ~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 233 GGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred cccccccceEEEeCCHHHHH
Confidence 6789999887764
No 165
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=358.97 Aligned_cols=221 Identities=23% Similarity=0.309 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|. .+.+|+|.++|+++
T Consensus 2 ~~~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~~~~G~i~~~g~~i 69 (246)
T PRK14269 2 IAKTTNLNLFY----------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKI--AKIDGLVEIEGKDV 69 (246)
T ss_pred ceeeeeeEEEE----------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCCceEEEECCEec
Confidence 57899999988 4467999999999999999999999999999999999997531 13689999999987
Q ss_pred cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCChhh
Q psy12625 100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSGGQ 173 (612)
Q Consensus 100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGe 173 (612)
.+. ..+++.++|++|++.+++ .|++||+.+....+. ........+++++++++.+|+. +..++.+.+|||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 147 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQ 147 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHH
Confidence 532 345778999999998887 699999988654321 0011233456688999999994 45678889999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++. .+.+.+|++++|++|++++.|++
T Consensus 148 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 225 (246)
T PRK14269 148 QQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGES 225 (246)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999865 899999999976 57889999999999999999987
Q ss_pred cCh
Q psy12625 254 PGL 256 (612)
Q Consensus 254 ~~~ 256 (612)
++.
T Consensus 226 ~~~ 228 (246)
T PRK14269 226 KEF 228 (246)
T ss_pred HHH
Confidence 765
No 166
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-44 Score=365.23 Aligned_cols=225 Identities=20% Similarity=0.266 Sum_probs=189.3
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCC---CCCceeEEEECCE
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK---TETNSGYIEINET 97 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~---~~~~~G~I~~~g~ 97 (612)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|.. ....+|+|.++|+
T Consensus 2 l~~~nl~~~~----------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~ 71 (272)
T PRK13547 2 LTADHLHVAR----------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE 71 (272)
T ss_pred eEEEEEEEEE----------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCE
Confidence 7899999987 45679999999999999999999999999999999999988631 0012899999999
Q ss_pred eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
++.. ...+++.++|++|++..++.+||+||+.+....... ......+..++++++++.+|+.+..++.+.+||||||
T Consensus 72 ~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGEL 151 (272)
T ss_pred EcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 8643 234566799999998766679999999875321100 0111123456788999999999989999999999999
Q ss_pred hHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecC
Q psy12625 175 KRLSIALELL---------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 175 qRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
|||+|||+|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~ 230 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 9999999999 599999999999999999999999999999875 899999999986 57789999999999
Q ss_pred CeEEEecCccCh
Q psy12625 245 GYCTYQGTVPGL 256 (612)
Q Consensus 245 G~iv~~G~~~~~ 256 (612)
|++++.|+++++
T Consensus 231 G~i~~~g~~~~~ 242 (272)
T PRK13547 231 GAIVAHGAPADV 242 (272)
T ss_pred CeEEEecCHHHH
Confidence 999999988765
No 167
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-45 Score=334.78 Aligned_cols=220 Identities=24% Similarity=0.369 Sum_probs=198.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+.++| +...+|++||++.++|+++.|+|.|||||||+|+||.-+.+| ..|.|.+||+.+
T Consensus 6 ~l~v~dlHK~~----------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P-----~~G~I~v~geei 70 (256)
T COG4598 6 ALEVEDLHKRY----------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-----SAGSIRVNGEEI 70 (256)
T ss_pred ceehhHHHhhc----------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC-----CCceEEECCeEE
Confidence 57888888877 888999999999999999999999999999999999999886 689999999876
Q ss_pred cc------------h---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc
Q psy12625 100 QD------------H---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164 (612)
Q Consensus 100 ~~------------~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 164 (612)
.- . ..+|.+.++|+|+.++++.+||.||+.-+..--+ ..++.+..++++.+|+.+|+.+..|.
T Consensus 71 ~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~ 148 (256)
T COG4598 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA 148 (256)
T ss_pred EeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc
Confidence 21 1 2356789999999999999999999865432112 35677888999999999999999999
Q ss_pred ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
++..|||||+||++|||||+.+|+++++|||||+|||.-.-++++.+++|+++|+|++++||... ...+...+|++|++
T Consensus 149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fLh~ 227 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFLHQ 227 (256)
T ss_pred CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999976 57889999999999
Q ss_pred CeEEEecCccChh
Q psy12625 245 GYCTYQGTVPGLV 257 (612)
Q Consensus 245 G~iv~~G~~~~~~ 257 (612)
|.+-++|+|+++.
T Consensus 228 G~iEE~G~P~qvf 240 (256)
T COG4598 228 GKIEEEGPPEQVF 240 (256)
T ss_pred ceecccCChHHHh
Confidence 9999999999773
No 168
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=395.55 Aligned_cols=224 Identities=23% Similarity=0.312 Sum_probs=195.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+++|+|.++|+++
T Consensus 5 ~l~~~nl~~~~----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTF----------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPH---GTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEe----------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCCCeEEEECCEEC
Confidence 58999999987 456799999999999999999999999999999999999875 12689999999987
Q ss_pred cch--H-hhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QDH--R-MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~~--~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
... . ..++.++||+|++.+++.+||+||+.+..........+.++..++++++++.+|+.+..++++++||||||||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr 151 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQL 151 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence 432 1 2357799999999999999999999886432210112233445678999999999988999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.|+++++
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999999999999999999999999999888999999999976 67889999999999999999998876
Q ss_pred h
Q psy12625 257 V 257 (612)
Q Consensus 257 ~ 257 (612)
.
T Consensus 231 ~ 231 (506)
T PRK13549 231 T 231 (506)
T ss_pred C
Confidence 3
No 169
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=358.16 Aligned_cols=222 Identities=25% Similarity=0.316 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 5 ILQVSDLSVYY----------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74 (252)
T ss_pred eEEEEeeEEEE----------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence 58999999987 34679999999999999999999999999999999999854110012489999999986
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 171 (612)
.. ...+++.++|++|++.+++ .||+||+.+..... + ...+...+++++++++.+|+. +..++.+.+|||
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (252)
T PRK14239 75 YSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSG 151 (252)
T ss_pred cCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCH
Confidence 32 1345678999999998887 89999998865432 1 112233456678899999874 456888999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 689999999976 678899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
+++++
T Consensus 230 ~~~~~ 234 (252)
T PRK14239 230 DTKQM 234 (252)
T ss_pred CHHHH
Confidence 88765
No 170
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-43 Score=357.39 Aligned_cols=222 Identities=19% Similarity=0.286 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++++++|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14240 3 KISVKDLDLFY----------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72 (250)
T ss_pred eEEEEEEEEEE----------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 58899999987 34579999999999999999999999999999999999876311112589999999986
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 171 (612)
.. ....++.++|++|++.+++ .|++||+.+...... ..+.++.+++++++++.+++. +..++.+.+|||
T Consensus 73 ~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 149 (250)
T PRK14240 73 YKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSG 149 (250)
T ss_pred cccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCH
Confidence 42 2345778999999998887 899999998654321 112334556788889999874 456888999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++|++|+++..|
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 150 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 789999999975 578899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
++++.
T Consensus 228 ~~~~~ 232 (250)
T PRK14240 228 DTVDL 232 (250)
T ss_pred CHHHH
Confidence 87654
No 171
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-43 Score=357.62 Aligned_cols=225 Identities=22% Similarity=0.278 Sum_probs=189.1
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
+.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|......+|+|.++|++
T Consensus 3 ~~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 72 (252)
T PRK14272 3 LLLSAQDVNIYY----------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQD 72 (252)
T ss_pred EEEEEeeeEEEE----------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEE
Confidence 368999999987 3467999999999999999999999999999999999998763111247999999998
Q ss_pred ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625 99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS 170 (612)
Q Consensus 99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS 170 (612)
+.. ...+++.++|++|++.+++.+|+.||+.+...... ...+++..+.+++.++.+++. +..++.+++||
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 150 (252)
T PRK14272 73 IYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLS 150 (252)
T ss_pred cccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCC
Confidence 642 12456789999999999999999999987643221 112333455677778878753 45688899999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.
T Consensus 151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 699999999986 57789999999999999999
Q ss_pred cCccChh
Q psy12625 251 GTVPGLV 257 (612)
Q Consensus 251 G~~~~~~ 257 (612)
|++++..
T Consensus 229 ~~~~~~~ 235 (252)
T PRK14272 229 GPTDQLF 235 (252)
T ss_pred CCHHHHH
Confidence 9887653
No 172
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=363.23 Aligned_cols=221 Identities=21% Similarity=0.278 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++|.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~~-------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK-------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-----FEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC-------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCEEEECCEEC
Confidence 5899999998821 1234599999999999999999999999999999999999986 689999999986
Q ss_pred cc--hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QD--HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
.. ....++.++|++|++. .++..||.||+.+..... ...+++..++++++++.+||.+..++++.+||||||||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 148 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQR 148 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH
Confidence 43 2345778999999974 566789999998764321 22344455678999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
++|||||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++. .+. .+|++++|++|+++..|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 999999999986 454 699999999999999999876
Q ss_pred hh
Q psy12625 256 LV 257 (612)
Q Consensus 256 ~~ 257 (612)
..
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 54
No 173
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-43 Score=357.28 Aligned_cols=222 Identities=19% Similarity=0.289 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|..+.+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~ 72 (249)
T PRK14253 3 KFNIENLDLFY----------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72 (249)
T ss_pred eEEEeccEEEE----------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEc
Confidence 58899999987 44679999999999999999999999999999999999987632224689999999886
Q ss_pred cc---hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCChh
Q psy12625 100 QD---HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSGG 172 (612)
Q Consensus 100 ~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgG 172 (612)
.. ....++.++|++|++.+++ .||.||+.+..... . ...+...++++++.++.+|+. +..++.+++||||
T Consensus 73 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 149 (249)
T PRK14253 73 YGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ-G-IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGG 149 (249)
T ss_pred ccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc-C-CCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHH
Confidence 32 2345778999999999887 89999998764321 1 112233456678888988874 4567888999999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
|||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..|+
T Consensus 150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~ 227 (249)
T PRK14253 150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDD 227 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999976 6788999999999999999998
Q ss_pred ccCh
Q psy12625 253 VPGL 256 (612)
Q Consensus 253 ~~~~ 256 (612)
+++.
T Consensus 228 ~~~~ 231 (249)
T PRK14253 228 TQVI 231 (249)
T ss_pred HHHH
Confidence 7654
No 174
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-43 Score=349.94 Aligned_cols=203 Identities=29% Similarity=0.429 Sum_probs=177.9
Q ss_pred eEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc---
Q psy12625 25 DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--- 101 (612)
Q Consensus 25 ~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~--- 101 (612)
||+++| +++.+ |+|+++++ |+++|+||||||||||+++|+|+.+| .+|+|.++|.++.+
T Consensus 5 ~l~~~~----------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~~~~~ 66 (214)
T cd03297 5 DIEKRL----------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP-----DGGTIVLNGTVLFDSRK 66 (214)
T ss_pred eeeEec----------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEecccccc
Confidence 788877 44545 99999999 99999999999999999999999886 68999999988642
Q ss_pred ---hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 102 ---HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 102 ---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
....++.++|++|++.+++.+|++||+.+..... .....+++++++++.+|+.+..++.+.+||||||||++
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 141 (214)
T cd03297 67 KINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVA 141 (214)
T ss_pred hhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHH
Confidence 1234678999999999999999999998764321 22334567889999999998889999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 142 LARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999875 899999999976 577899999999999998765
No 175
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-43 Score=355.86 Aligned_cols=223 Identities=23% Similarity=0.340 Sum_probs=188.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 3 IIEIENFSAYY----------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred eEEEEeeEEEe----------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 58999999987 34679999999999999999999999999999999999987411112689999999886
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSg 171 (612)
.. ....++.++|++|++.+++ .|++||+.+...... ...++..++.+++.++.+|+.+ ..++.+.+|||
T Consensus 73 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 149 (250)
T PRK14262 73 YDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG 149 (250)
T ss_pred ccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCH
Confidence 42 1235678999999999887 899999988654321 1123334566788999999853 46888999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|+++..|
T Consensus 150 Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14262 150 GQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYG 227 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999975 689999999976 578899999999999999999
Q ss_pred CccChh
Q psy12625 252 TVPGLV 257 (612)
Q Consensus 252 ~~~~~~ 257 (612)
+++++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14262 228 PTREIV 233 (250)
T ss_pred CHHHHH
Confidence 887653
No 176
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=356.28 Aligned_cols=222 Identities=20% Similarity=0.305 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|..+.+.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~----------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 4 KIKIRGVNFFY----------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENI 73 (251)
T ss_pred eEEEEEEEEEE----------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEc
Confidence 58899999987 34679999999999999999999999999999999999998743223479999999986
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 171 (612)
.. ...+++.++|++|++.+++. |++||+.+....+. ...++..++.+++.++.+|+. +..++.+.+|||
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 150 (251)
T PRK14249 74 YSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG 150 (251)
T ss_pred cccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH
Confidence 42 13457789999999998875 99999988654321 111223345677888888874 456888999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++ +++|||+++|++. .+.+.||++++|++|++++.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999995 5899999999976 578899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
++++.
T Consensus 229 ~~~~~ 233 (251)
T PRK14249 229 RTGEI 233 (251)
T ss_pred CHHHH
Confidence 88765
No 177
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=392.30 Aligned_cols=222 Identities=20% Similarity=0.283 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++| +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 4 ~i~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAF----------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR-----DAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEe----------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEC
Confidence 58999999988 456799999999999999999999999999999999999986 589999999986
Q ss_pred cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
... ...++.++|++|++.+++.+||+||+.++...... ...+.++.+++++++++.+||.+..++++++|||||||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 148 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQ 148 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH
Confidence 421 22356799999999999999999999886432110 11223344567899999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|+++..|++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999999999999999999999999999999888999999999986 6788999999999999999999887
Q ss_pred hh
Q psy12625 256 LV 257 (612)
Q Consensus 256 ~~ 257 (612)
+.
T Consensus 228 ~~ 229 (501)
T PRK10762 228 LT 229 (501)
T ss_pred CC
Confidence 53
No 178
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-43 Score=359.50 Aligned_cols=223 Identities=22% Similarity=0.284 Sum_probs=186.5
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+.....+.+|+|.++|++
T Consensus 20 ~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 89 (268)
T PRK14248 20 HILEVKDLSIYY----------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN 89 (268)
T ss_pred ceEEEEEEEEEe----------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE
Confidence 369999999987 4567999999999999999999999999999999999986410001368999999998
Q ss_pred ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625 99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS 170 (612)
Q Consensus 99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS 170 (612)
+.. ....++.++|++|++.+++. |++||+.+...... .......++.+.+.++.+++. +..++.+++||
T Consensus 90 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 166 (268)
T PRK14248 90 ILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLS 166 (268)
T ss_pred cccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCC
Confidence 642 12456789999999988884 99999987643221 112223345678889999884 45688899999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++||+. .+.+.||++++|++|++++.
T Consensus 167 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999965 689999999976 57889999999999999999
Q ss_pred cCccCh
Q psy12625 251 GTVPGL 256 (612)
Q Consensus 251 G~~~~~ 256 (612)
|++++.
T Consensus 245 ~~~~~~ 250 (268)
T PRK14248 245 DQTEQI 250 (268)
T ss_pred CCHHHH
Confidence 987655
No 179
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-43 Score=356.72 Aligned_cols=223 Identities=21% Similarity=0.307 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.-+++|+++.| +++++|+|+|+++++||+++|+||||||||||+++|+|+.++....+.+|+|.++|+++
T Consensus 5 ~~~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 74 (251)
T PRK14244 5 HASVKNLNLWY----------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74 (251)
T ss_pred EEEeeeEEEEE----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEeh
Confidence 34678999887 44679999999999999999999999999999999999976211113589999999886
Q ss_pred cch----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCCh
Q psy12625 100 QDH----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLSG 171 (612)
Q Consensus 100 ~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSg 171 (612)
... ...++.++|++|++.+++. ||+||+.+....+ .........++.++++++.+|+.+ ..++.+.+|||
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (251)
T PRK14244 75 YSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG 152 (251)
T ss_pred HhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCH
Confidence 421 2356789999999988885 9999998764332 111122334556888999999965 45778899999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.+.||++++|++|++++.|
T Consensus 153 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~ 230 (251)
T PRK14244 153 GQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYN 230 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999864 899999999986 577899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
+++++
T Consensus 231 ~~~~~ 235 (251)
T PRK14244 231 TTQEI 235 (251)
T ss_pred CHHHH
Confidence 87654
No 180
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-43 Score=360.14 Aligned_cols=225 Identities=20% Similarity=0.295 Sum_probs=192.0
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|..+.+.+|+|.++|.
T Consensus 19 ~~~l~i~nl~~~~----------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~ 88 (276)
T PRK14271 19 APAMAAVNLTLGF----------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGR 88 (276)
T ss_pred CcEEEEeeEEEEE----------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCE
Confidence 4478999999998 456799999999999999999999999999999999999886333346899999998
Q ss_pred eccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCC
Q psy12625 98 RLQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLS 170 (612)
Q Consensus 98 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LS 170 (612)
++.+. ..+++.++|++|++.+++ .|++||+.+..... ...+.++.++++.++++.+|+.+ ..++.+.+||
T Consensus 89 ~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS 165 (276)
T PRK14271 89 SIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLS 165 (276)
T ss_pred EccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCC
Confidence 86432 345778999999998888 89999998764321 11233444556788999999974 4577889999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+++|++++|++|+++..
T Consensus 166 gGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 489999999976 67889999999999999999
Q ss_pred cCccChh
Q psy12625 251 GTVPGLV 257 (612)
Q Consensus 251 G~~~~~~ 257 (612)
|+++++.
T Consensus 244 g~~~~~~ 250 (276)
T PRK14271 244 GPTEQLF 250 (276)
T ss_pred CCHHHHH
Confidence 9887653
No 181
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-43 Score=358.65 Aligned_cols=227 Identities=22% Similarity=0.295 Sum_probs=190.7
Q ss_pred CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625 15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94 (612)
Q Consensus 15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~ 94 (612)
+.+...|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.+
T Consensus 20 ~~~~~~l~~~nl~~~~----------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 20 SDEQTALEVRNLNLFY----------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred CCCCcEEEEEEEEEEE----------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 3344579999999988 345799999999999999999999999999999999999873111136899999
Q ss_pred CCEeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCccc
Q psy12625 95 NETRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLT 166 (612)
Q Consensus 95 ~g~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~ 166 (612)
+|.++.. ...+++.++|++|++.+++. |++||+.+...... ...+...+++++++++.+++. +..++.+
T Consensus 90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 166 (272)
T PRK14236 90 DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHENA 166 (272)
T ss_pred CCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc
Confidence 9998642 13457789999999988885 99999987654321 112233456688899999985 3567889
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|+
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~ 244 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGK 244 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999976 689999999976 5778999999999999
Q ss_pred EEEecCccCh
Q psy12625 247 CTYQGTVPGL 256 (612)
Q Consensus 247 iv~~G~~~~~ 256 (612)
++..|++++.
T Consensus 245 i~~~g~~~~~ 254 (272)
T PRK14236 245 LVEYGDTDTL 254 (272)
T ss_pred EEecCCHHHH
Confidence 9999987754
No 182
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.2e-43 Score=358.03 Aligned_cols=219 Identities=25% Similarity=0.348 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe-
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR- 98 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~- 98 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++
T Consensus 6 ~l~~~~l~~~~----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLY----------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP-----DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEc----------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCEEEECCccc
Confidence 58999999987 346799999999999999999999999999999999999886 68999999987
Q ss_pred ----ccch--Hh----hccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcc
Q psy12625 99 ----LQDH--RM----LRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTL 165 (612)
Q Consensus 99 ----~~~~--~~----~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ 165 (612)
+.+. .. .++.++|++|++. +++.+|+.||+.+..... . .....+.++++.++++.+|+.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 5431 11 2457999999973 677789999987643211 1 1122334567889999999974 77899
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.||++++|++
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~ 227 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ 227 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999874 899999999976 57779999999999
Q ss_pred CeEEEecCccCh
Q psy12625 245 GYCTYQGTVPGL 256 (612)
Q Consensus 245 G~iv~~G~~~~~ 256 (612)
|++++.|+++++
T Consensus 228 g~i~~~~~~~~~ 239 (258)
T PRK11701 228 GRVVESGLTDQV 239 (258)
T ss_pred CEEEEeCCHHHH
Confidence 999999988765
No 183
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-43 Score=356.67 Aligned_cols=224 Identities=19% Similarity=0.321 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|......+|+|.++|+++
T Consensus 7 ~l~~~nl~~~~----------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i 76 (261)
T PRK14258 7 AIKVNNLSFYY----------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNI 76 (261)
T ss_pred eEEEeeEEEEe----------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEh
Confidence 58999999987 34569999999999999999999999999999999999998642223579999999886
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSg 171 (612)
.. ...+++.++|++|++.+++ .|++||+.+...... ..+..+.++++.++++.+|+.+ ..++.+.+|||
T Consensus 77 ~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 153 (261)
T PRK14258 77 YERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSG 153 (261)
T ss_pred hccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence 31 1345678999999998888 899999987653321 1123334567889999999753 56888899999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC-----C
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE-----G 245 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----G 245 (612)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++||+. .+.++||++++|++ |
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCc
Confidence 999999999999999999999999999999999999999999975 5899999999986 68899999999999 9
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
++++.|+++++.
T Consensus 233 ~i~~~~~~~~~~ 244 (261)
T PRK14258 233 QLVEFGLTKKIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 999999988763
No 184
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=392.37 Aligned_cols=222 Identities=23% Similarity=0.348 Sum_probs=193.4
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSF----------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-----TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEc----------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC-----CccEEEECCEEC
Confidence 58999999987 456799999999999999999999999999999999999886 689999999987
Q ss_pred cch--H-hhccceEEEccCCCCCCCCCHHHHHHHHHHhc---cCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChh
Q psy12625 100 QDH--R-MLRKESCYIMQDNLLQELLTVEESLTVAAHLK---LGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG 172 (612)
Q Consensus 100 ~~~--~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~---~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 172 (612)
... . ..++.++||+|++.+++.+||+||+.++.... .+. ..+.++.+++++++++.+||.+..++++++||||
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 149 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSIS 149 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHH
Confidence 432 1 23467999999999999999999998753210 010 0123344567899999999999999999999999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.|+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999999999999888999999999976 6788999999999999999999
Q ss_pred ccChh
Q psy12625 253 VPGLV 257 (612)
Q Consensus 253 ~~~~~ 257 (612)
++++.
T Consensus 229 ~~~~~ 233 (510)
T PRK09700 229 VSDVS 233 (510)
T ss_pred hhhCC
Confidence 88753
No 185
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-43 Score=354.83 Aligned_cols=222 Identities=22% Similarity=0.289 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+.+|+|.++|+++
T Consensus 6 ~i~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 75 (253)
T PRK14261 6 ILSTKNLNLWY----------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENI 75 (253)
T ss_pred eEEEeeeEEEE----------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 68999999987 45679999999999999999999999999999999999876321112489999999986
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 171 (612)
.. ....++.++|++|++.+++ .||+||+.+....+. .......++.+.++++.+++. +..++.+.+|||
T Consensus 76 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 152 (253)
T PRK14261 76 MDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG 152 (253)
T ss_pred cccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH
Confidence 43 1345678999999999888 499999998754321 112233456788889998874 346788999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++|+++..|
T Consensus 153 G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14261 153 GQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFD 230 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcC
Confidence 999999999999999999999999999999999999999999976 589999999976 577899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
+++++
T Consensus 231 ~~~~~ 235 (253)
T PRK14261 231 KTTQI 235 (253)
T ss_pred CHHHH
Confidence 88765
No 186
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.9e-43 Score=344.81 Aligned_cols=199 Identities=30% Similarity=0.448 Sum_probs=174.1
Q ss_pred EeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc--
Q psy12625 24 QDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD-- 101 (612)
Q Consensus 24 ~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~-- 101 (612)
+|+++.| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 2 ~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~~~~ 66 (206)
T TIGR03608 2 KNISKKF----------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-----DSGQVYLNGKETPPLN 66 (206)
T ss_pred cceEEEE----------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCEEccccc
Confidence 6788876 446799999999999999999999999999999999999886 68999999998531
Q ss_pred -h---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 102 -H---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 102 -~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
. ...++.++|++|++.+++.+|++||+.+..... ...+.+..++++++++.+|+++..++.+.+||||||||+
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~ 143 (206)
T TIGR03608 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRV 143 (206)
T ss_pred hhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHH
Confidence 1 134678999999999999999999999865432 223344567789999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 242 (612)
+|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. . .+.||++++|
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 144 ALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 9999999999999999999999999999999999999877999999999985 3 4789999875
No 187
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=354.99 Aligned_cols=222 Identities=19% Similarity=0.321 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+|......+|+|.++|+++
T Consensus 7 ~l~~~~l~~~~----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i 76 (259)
T PRK14260 7 AIKVKDLSFYY----------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI 76 (259)
T ss_pred eEEEEEEEEEE----------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEec
Confidence 58999999987 44679999999999999999999999999999999999987521001489999999986
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 171 (612)
.. ....++.++|++|++.+++ .||+||+.+....+. ..++.+.+++++++++.+|+. +..++.+.+|||
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 153 (259)
T PRK14260 77 YDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSG 153 (259)
T ss_pred cccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence 42 1345678999999999887 899999987654321 123334456788899999883 567888999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec-----CCe
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT-----EGY 246 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-----~G~ 246 (612)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|+
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~ 231 (259)
T PRK14260 154 GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQ 231 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCce
Confidence 999999999999999999999999999999999999999999975 589999999986 6889999999997 599
Q ss_pred EEEecCccCh
Q psy12625 247 CTYQGTVPGL 256 (612)
Q Consensus 247 iv~~G~~~~~ 256 (612)
+++.|+++++
T Consensus 232 i~~~~~~~~~ 241 (259)
T PRK14260 232 MVEFGVTTQI 241 (259)
T ss_pred EEEeCCHHHH
Confidence 9999988875
No 188
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-43 Score=326.78 Aligned_cols=215 Identities=28% Similarity=0.441 Sum_probs=193.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
++..++++.+|+. ..+.+|+|+|+++.+||.++++||||||||||||+++|+.+| ..|+|.+||+++
T Consensus 3 ~l~~~~~sl~y~g--------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P-----~~G~i~l~~r~i 69 (259)
T COG4525 3 MLNVSHLSLSYEG--------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-----SRGSIQLNGRRI 69 (259)
T ss_pred eeehhheEEecCC--------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc-----ccceEEECCEec
Confidence 4566788877732 235599999999999999999999999999999999999987 689999999997
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
..+. ..-|.|+|++.++|.+||.||+.|+.+++ .+++.++.+++.+.+..+||++..++++-+|||||||||.|
T Consensus 70 ~gPg---aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGi 143 (259)
T COG4525 70 EGPG---AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGI 143 (259)
T ss_pred cCCC---ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHH
Confidence 6542 23589999999999999999999998886 57788899999999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC--CeEEEecCcc
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE--GYCTYQGTVP 254 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~ 254 (612)
||||+.+|++|+||||+++||..+++++-++|-++.+ .|+.++++||+.. +..-+++++++|+. |+++..-+++
T Consensus 144 ARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 144 ARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999999999999999999999999999876 7999999999987 56678999999985 7998877665
No 189
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.4e-43 Score=356.89 Aligned_cols=215 Identities=26% Similarity=0.422 Sum_probs=178.3
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
++++|+++.|. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~--------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYK--------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-----ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecC--------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCCEEEECCeehH
Confidence 46899998872 1236799999999999999999999999999999999999986 6899999998864
Q ss_pred c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHH-----HHHHHHHHHHc--CCccccCcccCCCCh
Q psy12625 101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-----ESKVDSIADSL--SISTCKNTLTKHLSG 171 (612)
Q Consensus 101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~~~~LSg 171 (612)
. ...+++.++|++|++.+++ .||+||+.+... ....... ....+++++.+ ++++..++++.+|||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSg 141 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSG 141 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCH
Confidence 2 2345678999999988775 799999976421 1111111 11234556666 666677888999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+ ..||++++|++|++++.|
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999974 899999999986 45 569999999999999999
Q ss_pred CccChh
Q psy12625 252 TVPGLV 257 (612)
Q Consensus 252 ~~~~~~ 257 (612)
+++++.
T Consensus 219 ~~~~~~ 224 (237)
T cd03252 219 SHDELL 224 (237)
T ss_pred CHHHHH
Confidence 877654
No 190
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=352.58 Aligned_cols=223 Identities=22% Similarity=0.274 Sum_probs=186.0
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
.+|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+.+|+|.++|++
T Consensus 4 ~~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 73 (252)
T PRK14255 4 KIITSSDVHLFY----------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN 73 (252)
T ss_pred ceEEEEeEEEEE----------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEE
Confidence 468999999987 3467999999999999999999999999999999999986521011248999999998
Q ss_pred ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625 99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS 170 (612)
Q Consensus 99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS 170 (612)
+.. ...+++.++|++|++.+++ .|++||+.+....+. ...++..++++.+.++.+++. +..++.+++||
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS 150 (252)
T PRK14255 74 IYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLS 150 (252)
T ss_pred cccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCC
Confidence 632 2345678999999998888 799999988654321 111222345667788888763 45678899999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|+++..
T Consensus 151 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 151 GGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 489999999986 57889999999999999999
Q ss_pred cCccCh
Q psy12625 251 GTVPGL 256 (612)
Q Consensus 251 G~~~~~ 256 (612)
|++.+.
T Consensus 229 ~~~~~~ 234 (252)
T PRK14255 229 ADTKQM 234 (252)
T ss_pred CCHHHH
Confidence 988765
No 191
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-43 Score=342.99 Aligned_cols=198 Identities=33% Similarity=0.459 Sum_probs=169.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.+.|+||+|.|+. +.+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. .+.+|+|.++|+++
T Consensus 3 ~~~~~~~~~~~~~------~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~~~~G~i~i~g~~~ 74 (202)
T cd03233 3 TLSWRNISFTTGK------GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN--VSVEGDIHYNGIPY 74 (202)
T ss_pred eEEEEccEEEecc------CCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCC--CCcceEEEECCEEC
Confidence 6889999999953 224678999999999999999999999999999999999998831 13689999999986
Q ss_pred cch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 100 QDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 100 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
... ...++.++|++|++.+++.+||+||+.+..... .++.+.+||||||||++
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~ 128 (202)
T cd03233 75 KEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRGISGGERKRVS 128 (202)
T ss_pred ccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHH
Confidence 543 345678999999999999999999998753210 56778899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 129 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 129 IAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999875 6777776665444678999999999999998764
No 192
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=356.66 Aligned_cols=227 Identities=19% Similarity=0.252 Sum_probs=190.0
Q ss_pred CCCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE
Q psy12625 14 SPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93 (612)
Q Consensus 14 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~ 93 (612)
.+.++..|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.
T Consensus 14 ~~~~~~~l~~~nl~~~~----------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (274)
T PRK14265 14 INPDHSVFEVEGVKVFY----------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL 83 (274)
T ss_pred cCCCCceEEEeeEEEEe----------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEE
Confidence 35566689999999987 44679999999999999999999999999999999999986421112589999
Q ss_pred ECCEeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcc
Q psy12625 94 INETRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTL 165 (612)
Q Consensus 94 ~~g~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ 165 (612)
++|+++.. ...+++.++|++|++.+++. ||.||+.+....+ ... ...++.+++.++.+++. +..+++
T Consensus 84 ~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (274)
T PRK14265 84 YRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKLKEK 158 (274)
T ss_pred ECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHhcCC
Confidence 99988642 13456789999999988874 9999998864432 111 12234567788888873 456888
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec--
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT-- 243 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-- 243 (612)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++||+. .+.++||++++|+
T Consensus 159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~ 236 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTE 236 (274)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecc
Confidence 999999999999999999999999999999999999999999999999975 689999999986 6789999999997
Q ss_pred -------CCeEEEecCccChh
Q psy12625 244 -------EGYCTYQGTVPGLV 257 (612)
Q Consensus 244 -------~G~iv~~G~~~~~~ 257 (612)
+|++++.|+++++.
T Consensus 237 ~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 237 IDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred cccccccCceEEEeCCHHHHH
Confidence 89999999998763
No 193
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=352.58 Aligned_cols=222 Identities=23% Similarity=0.325 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++| +.+++|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~----------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 4 IISAKDVHLSY----------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI 73 (251)
T ss_pred eEEEEeeEEEE----------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEc
Confidence 58999999987 44679999999999999999999999999999999999986210112589999999986
Q ss_pred cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625 100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 171 (612)
.. ....++.++|++|++.+++ .||+||+.+...... ...++..+++++++++.+|+. +..++.+.+|||
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 150 (251)
T PRK14251 74 YGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSG 150 (251)
T ss_pred ccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCH
Confidence 32 1345678999999998886 799999987643321 112233446678899999984 456888999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|+++..|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999864 689999999986 578899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
++++.
T Consensus 229 ~~~~~ 233 (251)
T PRK14251 229 PTEEM 233 (251)
T ss_pred CHHHH
Confidence 87765
No 194
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.4e-42 Score=355.98 Aligned_cols=229 Identities=21% Similarity=0.329 Sum_probs=190.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|...... .+..++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~nl~~~~~~~~~~-~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~sG~i~~~g~~~ 76 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLS-GKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-----SQGNVSWRGEPL 76 (268)
T ss_pred eEEEeceEEEecCCccc-cccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEec
Confidence 48899999988310000 000136799999999999999999999999999999999999876 689999999986
Q ss_pred cch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCCh
Q psy12625 100 QDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg 171 (612)
... ...++.++|++|++ .+++..|+.|++.+...... .....+..++++++++.+|+. +..++.+.+|||
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 154 (268)
T PRK10419 77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKRPPQLSG 154 (268)
T ss_pred cccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCccCCh
Confidence 432 23567899999997 46677999999876532111 123344556789999999997 578999999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++.
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999999999999999999874 899999999976 57789999999999999999
Q ss_pred cCccChh
Q psy12625 251 GTVPGLV 257 (612)
Q Consensus 251 G~~~~~~ 257 (612)
|++++..
T Consensus 234 g~~~~~~ 240 (268)
T PRK10419 234 QPVGDKL 240 (268)
T ss_pred CChhhcc
Confidence 9987754
No 195
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.6e-43 Score=389.06 Aligned_cols=215 Identities=25% Similarity=0.350 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQY----------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-----DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEe----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEC
Confidence 69999999988 456799999999999999999999999999999999999886 689999999986
Q ss_pred cch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
... .. .++.++|++|++.+++.+||+||+.+.... ..+.+++++++++.+||.+..++++++||||||||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 148 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQI 148 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHH
Confidence 432 22 235799999999999999999999875311 12345678899999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.|++++.
T Consensus 149 v~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999999999999999888999999999976 57889999999999999999998765
Q ss_pred h
Q psy12625 257 V 257 (612)
Q Consensus 257 ~ 257 (612)
.
T Consensus 228 ~ 228 (510)
T PRK15439 228 S 228 (510)
T ss_pred C
Confidence 3
No 196
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.2e-42 Score=346.28 Aligned_cols=212 Identities=27% Similarity=0.457 Sum_probs=184.0
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.|.. +.+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~~------~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-----~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGH------GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV-----QEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccC------CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEEhH
Confidence 678999998721 11236799999999999999999999999999999999999876 6899999999864
Q ss_pred ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
.. ...++.++|++|++.+++.+|+.||+.+...... ....++.+++++++++.+||.+..++.+.+|||||||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~q 148 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQ 148 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH
Confidence 21 1356789999999999999999999998654321 1234445667899999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +++|||+++|+++ ..+.||++++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 5899999999975 4689999999999985
No 197
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.4e-42 Score=353.29 Aligned_cols=220 Identities=20% Similarity=0.318 Sum_probs=185.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|++++| ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. .+++|+|.++|++
T Consensus 3 ~~l~~~~l~~~~-----------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-~~~~G~i~~~g~~ 70 (254)
T PRK10418 3 QQIELRNIALQA-----------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGV-RQTAGRVLLDGKP 70 (254)
T ss_pred cEEEEeCeEEEe-----------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCcCCEEEECCee
Confidence 368999999976 2469999999999999999999999999999999999987521 1268999999998
Q ss_pred ccchHhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc---ccCcccCCCChhh
Q psy12625 99 LQDHRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST---CKNTLTKHLSGGQ 173 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgGe 173 (612)
+......++.++|++|++. +.+..|+.+++.+.+... . ... .++++.++++.+||.+ ..++.+++|||||
T Consensus 71 i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq 145 (254)
T PRK10418 71 VAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL-G--KPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGM 145 (254)
T ss_pred ccccccccceEEEEecCCccccCccccHHHHHHHHHHHc-C--CCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHH
Confidence 6432223467999999974 456679999987643321 1 111 2367889999999987 4688999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999976 4899999999976 5778999999999999999998
Q ss_pred ccCh
Q psy12625 253 VPGL 256 (612)
Q Consensus 253 ~~~~ 256 (612)
++++
T Consensus 225 ~~~~ 228 (254)
T PRK10418 225 VETL 228 (254)
T ss_pred HHHH
Confidence 7765
No 198
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=8.5e-43 Score=349.78 Aligned_cols=201 Identities=25% Similarity=0.414 Sum_probs=175.2
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHH
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE 125 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 125 (612)
|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.... ...+|++|++.+++.+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~---~~~~~v~q~~~l~~~~tv~ 72 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-----TSGGVILEGKQITEPG---PDRMVVFQNYSLLPWLTVR 72 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEECCCCC---hhheEEecCcccCCCCCHH
Confidence 5899999999999999999999999999999999886 6899999999864321 1248999999999999999
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625 126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205 (612)
Q Consensus 126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~ 205 (612)
||+.+......+ ...+.+.+++++++++.+||++..++.+++||||||||++|||+|+.+|++++|||||+|||+.++.
T Consensus 73 e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 73 ENIALAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHHHHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 999886321111 2334445667899999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 206 NLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 206 ~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
.+.+.|+++++ .|+|||+++|++. ++.++||++++|++|+++..|++.++
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999987 4899999999986 57889999999999999998865543
No 199
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=355.81 Aligned_cols=224 Identities=21% Similarity=0.292 Sum_probs=186.4
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++|+++.| +++.+|+|+|+++++||+++|+|+||||||||+++|+|+.++....+.+|+|.++|+
T Consensus 22 ~~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 22 KVVFDTQNLNLWY----------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred ceEEEEeeeEEEE----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 3469999999987 345799999999999999999999999999999999999862101136899999999
Q ss_pred eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC----CccccCcccCCC
Q psy12625 98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS----ISTCKNTLTKHL 169 (612)
Q Consensus 98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg----L~~~~~~~~~~L 169 (612)
++.. ...+++.++|++|++.+++ .||+||+.++..... ...++..++.+.+.++.++ +.+..++.+.+|
T Consensus 92 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L 168 (271)
T PRK14238 92 NIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL 168 (271)
T ss_pred EcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence 8632 2345678999999998887 599999988654321 1122233455677787775 445668889999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++
T Consensus 169 SgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~ 246 (271)
T PRK14238 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNE 246 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 689999999976 5778999999999999999
Q ss_pred ecCccCh
Q psy12625 250 QGTVPGL 256 (612)
Q Consensus 250 ~G~~~~~ 256 (612)
.|+++++
T Consensus 247 ~g~~~~~ 253 (271)
T PRK14238 247 YDDTDKI 253 (271)
T ss_pred eCCHHHH
Confidence 9987755
No 200
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.3e-42 Score=350.16 Aligned_cols=221 Identities=21% Similarity=0.233 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEECC
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEINE 96 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~g 96 (612)
..|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+. +| .+|+|.++|
T Consensus 6 ~~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----~~G~i~~~g 70 (252)
T CHL00131 6 PILEIKNLHASV----------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-----LEGDILFKG 70 (252)
T ss_pred ceEEEEeEEEEe----------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC-----CCceEEECC
Confidence 369999999987 3456999999999999999999999999999999999973 43 689999999
Q ss_pred Eeccch--Hhhcc-ceEEEccCCCCCCCCCHHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHHcCCc-cccCcccC-
Q psy12625 97 TRLQDH--RMLRK-ESCYIMQDNLLQELLTVEESLTVAAHLKLG----NQYSRKAKESKVDSIADSLSIS-TCKNTLTK- 167 (612)
Q Consensus 97 ~~~~~~--~~~~~-~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~- 167 (612)
.++... ...++ .++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+|+. +..++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 150 (252)
T CHL00131 71 ESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNE 150 (252)
T ss_pred EEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccccc
Confidence 986432 22232 488999999999999999998875432110 0111223346778899999997 46788887
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-ccceeeecCCe
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM-ADYLYVLTEGY 246 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~ 246 (612)
+||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++|+
T Consensus 151 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~ 229 (252)
T CHL00131 151 GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGK 229 (252)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCE
Confidence 59999999999999999999999999999999999999999999999878999999999976 45555 89999999999
Q ss_pred EEEecCccC
Q psy12625 247 CTYQGTVPG 255 (612)
Q Consensus 247 iv~~G~~~~ 255 (612)
+++.|+++.
T Consensus 230 i~~~~~~~~ 238 (252)
T CHL00131 230 IIKTGDAEL 238 (252)
T ss_pred EEEecChhh
Confidence 999998874
No 201
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=357.34 Aligned_cols=224 Identities=21% Similarity=0.307 Sum_probs=187.0
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+.....+.+|+|.++|+
T Consensus 37 ~~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~ 106 (286)
T PRK14275 37 KPHVVAKNFSIYY----------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGE 106 (286)
T ss_pred ceEEEEeeeEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCE
Confidence 3468999999987 345699999999999999999999999999999999998541000126899999998
Q ss_pred eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCC
Q psy12625 98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHL 169 (612)
Q Consensus 98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~L 169 (612)
++.. ...+++.++|++|++.+++. ||.||+.+...... ..+....++++.++++.+|+. +..++.+.+|
T Consensus 107 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 183 (286)
T PRK14275 107 DIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGL 183 (286)
T ss_pred EhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhC
Confidence 8642 12356789999999988874 99999998654321 112233456678889999873 5668889999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++||+. .+.++||++++|++|+++.
T Consensus 184 SgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 589999999986 5788999999999999999
Q ss_pred ecCccCh
Q psy12625 250 QGTVPGL 256 (612)
Q Consensus 250 ~G~~~~~ 256 (612)
.|+++++
T Consensus 262 ~g~~~~~ 268 (286)
T PRK14275 262 HAPTAQL 268 (286)
T ss_pred eCCHHHH
Confidence 9987765
No 202
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.8e-42 Score=352.37 Aligned_cols=219 Identities=26% Similarity=0.361 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe-
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR- 98 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~- 98 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 3 ~l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSY----------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-----DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEe----------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEEecccc
Confidence 58999999987 345689999999999999999999999999999999999886 58999999976
Q ss_pred ----ccch--H----hhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcc
Q psy12625 99 ----LQDH--R----MLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTL 165 (612)
Q Consensus 99 ----~~~~--~----~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 165 (612)
+... . ..++.++|++|++. +.+.+|+.||+.+.... .. .......+++++++++.+|+. +..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA-IG-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHH-hc-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 4321 1 12457999999974 45567999998754321 11 111123456788999999997 478999
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|++. .+...+|++++|++
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ 224 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999999999999999999876 4899999999976 67789999999999
Q ss_pred CeEEEecCccCh
Q psy12625 245 GYCTYQGTVPGL 256 (612)
Q Consensus 245 G~iv~~G~~~~~ 256 (612)
|++++.|+++++
T Consensus 225 G~i~~~~~~~~~ 236 (253)
T TIGR02323 225 GRVVESGLTDQV 236 (253)
T ss_pred CEEEEECCHHHH
Confidence 999999987655
No 203
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.6e-43 Score=398.93 Aligned_cols=224 Identities=29% Similarity=0.433 Sum_probs=185.5
Q ss_pred CCCCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE
Q psy12625 13 KSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92 (612)
Q Consensus 13 ~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I 92 (612)
+...-...++++||+|+|.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++| .+|+|
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~--------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p-----~~G~I 530 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGP--------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-----QQGRI 530 (709)
T ss_pred cccccCceEEEEEEEEEeCC--------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceE
Confidence 33444568999999999832 445799999999999999999999999999999999999987 68999
Q ss_pred EECCEeccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHH-----HHHHHHHHHHc--CCccccC
Q psy12625 93 EINETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-----ESKVDSIADSL--SISTCKN 163 (612)
Q Consensus 93 ~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~ 163 (612)
.+||.++.+ ...+|+++|||+||+.+|. -|++||+.++.. ..+.++. ...+.+.++.+ |++....
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p-----~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGNP-----EATDEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 999999754 4678999999999999886 699999987531 2222221 12233334433 3333444
Q ss_pred cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
....+||||||||++|||||+++|+||+||||||+||+.+.+.+.+.|.++. +|+|+|+++|.++ ..+.||||++|+
T Consensus 605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~ 681 (709)
T COG2274 605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLD 681 (709)
T ss_pred cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEcc
Confidence 4455799999999999999999999999999999999999999999999986 4689999999985 478999999999
Q ss_pred CCeEEEecCccChhh
Q psy12625 244 EGYCTYQGTVPGLVP 258 (612)
Q Consensus 244 ~G~iv~~G~~~~~~~ 258 (612)
+|+++.+|+.+++..
T Consensus 682 ~Gkiv~~gs~~ell~ 696 (709)
T COG2274 682 QGKIVEQGSHEELLA 696 (709)
T ss_pred CCceeccCCHHHHHH
Confidence 999999999998865
No 204
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-43 Score=352.73 Aligned_cols=215 Identities=27% Similarity=0.391 Sum_probs=179.7
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.+.. .++.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPG--------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-----DSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCC--------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC-----CCCEEEECCEEhh
Confidence 468999998721 224799999999999999999999999999999999999986 6899999998864
Q ss_pred c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHH-----HHHHHHHHHHc--CCccccCcccCCCCh
Q psy12625 101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-----ESKVDSIADSL--SISTCKNTLTKHLSG 171 (612)
Q Consensus 101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~~~~LSg 171 (612)
. ....++.++|++|++.+++ .||+||+.+.... ...... ...+++.++.+ |+.+..++.+.+|||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~ 141 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSG 141 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCH
Confidence 3 2345678999999998886 6999999764321 111111 11345667776 788888889999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+. .||++++|++|+++..|
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRIVVLEDGKIVERG 218 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEEEEecCCeEeeeC
Confidence 999999999999999999999999999999999999999999974 899999999986 454 49999999999999998
Q ss_pred CccChh
Q psy12625 252 TVPGLV 257 (612)
Q Consensus 252 ~~~~~~ 257 (612)
++++..
T Consensus 219 ~~~~~~ 224 (234)
T cd03251 219 THEELL 224 (234)
T ss_pred CHHHHH
Confidence 876653
No 205
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-42 Score=352.84 Aligned_cols=222 Identities=18% Similarity=0.252 Sum_probs=186.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.| +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|....+.+|+|.++|++
T Consensus 9 ~~l~i~~v~~~~----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 78 (264)
T PRK14243 9 TVLRTENLNVYY----------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN 78 (264)
T ss_pred eEEEEeeeEEEE----------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE
Confidence 369999999987 4457999999999999999999999999999999999987631111268999999988
Q ss_pred ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625 99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS 170 (612)
Q Consensus 99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS 170 (612)
+.. ...+++.++|++|++.+++ .|++||+.+..... ... ...+++++++++.+++. +..++.+.+||
T Consensus 79 i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 153 (264)
T PRK14243 79 LYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLS 153 (264)
T ss_pred ccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCC
Confidence 631 2345678999999998887 59999998865332 111 22345677788888874 35678899999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec-------
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT------- 243 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------- 243 (612)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|+
T Consensus 154 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999976 489999999976 6889999999998
Q ss_pred --CCeEEEecCccChh
Q psy12625 244 --EGYCTYQGTVPGLV 257 (612)
Q Consensus 244 --~G~iv~~G~~~~~~ 257 (612)
+|++++.|+++++.
T Consensus 232 ~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 232 GRYGYLVEFDRTEKIF 247 (264)
T ss_pred ccCceEEEeCCHHHHH
Confidence 79999999887763
No 206
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.5e-42 Score=384.56 Aligned_cols=222 Identities=21% Similarity=0.285 Sum_probs=190.9
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||+++| +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|. +.+|+|.++|+++.
T Consensus 2 l~i~~l~~~~----------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~---~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTF----------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG---TWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEe----------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECC
Confidence 7889999987 4467999999999999999999999999999999999998751 25899999999864
Q ss_pred ch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCcccc-CcccCCCChhhhh
Q psy12625 101 DH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCK-NTLTKHLSGGQKK 175 (612)
Q Consensus 101 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~~~~LSgGerq 175 (612)
.. ...++.++||+|++.+++.+||+||+.+........ ....++.+++++++++.+|+.+.. ++++++|||||||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 148 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQ 148 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHH
Confidence 32 123567999999999999999999998864332110 122334456789999999998765 6779999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|+++..|++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999999999999888999999999976 6788999999999999999998876
Q ss_pred h
Q psy12625 256 L 256 (612)
Q Consensus 256 ~ 256 (612)
.
T Consensus 228 ~ 228 (500)
T TIGR02633 228 M 228 (500)
T ss_pred C
Confidence 4
No 207
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-42 Score=355.45 Aligned_cols=222 Identities=18% Similarity=0.299 Sum_probs=187.1
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+
T Consensus 37 ~~~l~i~~l~~~~----------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~ 106 (285)
T PRK14254 37 ETVIEARDLNVFY----------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGK 106 (285)
T ss_pred CceEEEEEEEEEE----------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 3469999999987 346799999999999999999999999999999999999863110136899999998
Q ss_pred eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCC
Q psy12625 98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHL 169 (612)
Q Consensus 98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~L 169 (612)
++.. ...+++.++|++|++.+++. ||+||+.+...... .+. ..+++++++++.+|+. +..++++.+|
T Consensus 107 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L 181 (285)
T PRK14254 107 NVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSGLDL 181 (285)
T ss_pred EccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccC
Confidence 8632 23457789999999988885 99999988654321 222 3456788999999985 4568889999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccccee-eecCCeEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLY-VLTEGYCT 248 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G~iv 248 (612)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ .|||+++|++. .+.+++|+++ +|++|+++
T Consensus 182 SgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 182 SGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QAARISDKTAVFLTGGELV 259 (285)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEEE
Confidence 999999999999999999999999999999999999999999999864 79999999976 6778999975 67999999
Q ss_pred EecCccCh
Q psy12625 249 YQGTVPGL 256 (612)
Q Consensus 249 ~~G~~~~~ 256 (612)
..|++++.
T Consensus 260 ~~g~~~~~ 267 (285)
T PRK14254 260 EFDDTDKI 267 (285)
T ss_pred EeCCHHHH
Confidence 99987654
No 208
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=361.32 Aligned_cols=226 Identities=20% Similarity=0.306 Sum_probs=190.0
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++|+++.|.. +.+.+|+|+|++|++||+++|+|||||||||||++|+|+.++..+.+.+|+|.++|+
T Consensus 78 ~~~i~~~nls~~y~~--------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~ 149 (329)
T PRK14257 78 ANVFEIRNFNFWYMN--------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGT 149 (329)
T ss_pred CceEEEEeeEEEecC--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 347999999998831 345699999999999999999999999999999999999864222246899999999
Q ss_pred eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHHcCCc----cccCcccCC
Q psy12625 98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR-KAKESKVDSIADSLSIS----TCKNTLTKH 168 (612)
Q Consensus 98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~-~~~~~~v~~~l~~lgL~----~~~~~~~~~ 168 (612)
++.. ...+++.++||||++.+++ .|++||+.|+.... ...+ +..++.++++++.++|. +..++.+.+
T Consensus 150 ~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~ 225 (329)
T PRK14257 150 NTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNA 225 (329)
T ss_pred EccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCccc
Confidence 9742 1346788999999999885 79999999864321 1222 22344578888988874 456788889
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.||||++|++|+++
T Consensus 226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~ 303 (329)
T PRK14257 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIE 303 (329)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999876 689999999986 577889999999999999
Q ss_pred EecCccChh
Q psy12625 249 YQGTVPGLV 257 (612)
Q Consensus 249 ~~G~~~~~~ 257 (612)
+.|+++++.
T Consensus 304 e~g~~~~l~ 312 (329)
T PRK14257 304 EAGETKTIF 312 (329)
T ss_pred EeCCHHHHh
Confidence 999998874
No 209
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.6e-42 Score=347.75 Aligned_cols=208 Identities=26% Similarity=0.355 Sum_probs=177.2
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC--CCCCC
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL--LQELL 122 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~--l~~~l 122 (612)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+|. ..+.+|+|.++|+++......++.++|++|++. +.+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPG-LTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCc-cCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 579999999999999999999999999999999998852 112589999999986443223467999999984 55678
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc---cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCC
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS---TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgL 199 (612)
|++|++.+...... ......+++++++++.+|+. +..++.+.+|||||||||+|||+|+.+|++++|||||+||
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L 156 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL 156 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 99999977543321 11233456789999999998 5678999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 200 DYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 200 D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|+.++..+.+.|+++++ .|+|||+++|+++ ++...+|++++|++|+++..|+++++.
T Consensus 157 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 157 DVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999987 4899999999976 677899999999999999999877653
No 210
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-42 Score=350.50 Aligned_cols=224 Identities=24% Similarity=0.343 Sum_probs=188.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCC-CceeEEEECCEe
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETR 98 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~-~~~G~I~~~g~~ 98 (612)
.++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|..+. ...|++.++|++
T Consensus 10 ~i~~~~~~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 10 VFNISRLYLYI----------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred heeeeeEEEec----------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcc
Confidence 58999999987 5677999999999999999999999999999999999998874321 123666666665
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCChh
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSGG 172 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgG 172 (612)
+.. ....++.++|++|++.+++.+|++||+.+...... ...+++.+++++++++.+|+. +..++.++.||||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 157 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG 157 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence 432 23457789999999999999999999998754321 112344556789999999996 3568889999999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.||++++|++|+++..|+
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~ 235 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGS 235 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999965 689999999975 5778999999999999999998
Q ss_pred ccChh
Q psy12625 253 VPGLV 257 (612)
Q Consensus 253 ~~~~~ 257 (612)
+++..
T Consensus 236 ~~~~~ 240 (257)
T PRK14246 236 SNEIF 240 (257)
T ss_pred HHHHH
Confidence 87653
No 211
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-42 Score=339.07 Aligned_cols=200 Identities=26% Similarity=0.355 Sum_probs=175.0
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACER----------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP-----DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEE----------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEcc
Confidence 7889999987 346799999999999999999999999999999999999886 5899999999864
Q ss_pred ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.. ..+++.++|++|++.+++.+|+.||+.+..... .. ..+++++++++.+||.+..++++.+||||||||++|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~l 140 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVAL 140 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHH
Confidence 32 345678999999999999999999998865432 11 234678899999999988899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 242 (612)
|+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++||+. .+.+..+|++++
T Consensus 141 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 99999999999999999999999999999999999878899999999986 455555677665
No 212
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=383.69 Aligned_cols=218 Identities=25% Similarity=0.350 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTF----------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-----DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEE----------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCCEEEECCEEC
Confidence 58999999988 446799999999999999999999999999999999999886 689999999986
Q ss_pred cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
... ..+++.++|++|++.+++.+||+||+.++............+.+++++++++.+||.+..++++++||||||||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr 148 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQM 148 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHH
Confidence 421 23567899999999999999999999885321110112234445678999999999988899999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
|+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999888999999999986 67889999999999999887754
No 213
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.7e-42 Score=344.96 Aligned_cols=212 Identities=25% Similarity=0.351 Sum_probs=180.2
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.| +++++++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 6 ~~i~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~ 70 (225)
T PRK10247 6 PLLQLQNVGYLA----------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-----TSGTLLFEGED 70 (225)
T ss_pred ceEEEeccEEee----------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCCeEEECCEE
Confidence 369999999987 456799999999999999999999999999999999999876 68999999988
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhh
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKK 175 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq 175 (612)
+.. ...+++.++|++|++.+++ .|++||+.+...... . ...+++++++++.+|+. ...++++.+|||||||
T Consensus 71 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~---~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 144 (225)
T PRK10247 71 ISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN---Q--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQ 144 (225)
T ss_pred cCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcC---C--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHH
Confidence 643 2345678999999998887 599999987643321 1 11235678999999996 5789999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec-CCeEEEecCc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT-EGYCTYQGTV 253 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~~ 253 (612)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++. .+ ..||++++|+ ++..+.+|..
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhhh
Confidence 99999999999999999999999999999999999999976 5899999999986 45 5699999995 4555565543
No 214
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-42 Score=348.27 Aligned_cols=223 Identities=19% Similarity=0.309 Sum_probs=187.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
+.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+.+|+|.+||.+
T Consensus 2 ~~l~~~~v~~~~----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~ 71 (250)
T PRK14266 2 YRIEVENLNTYF----------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD 71 (250)
T ss_pred cEEEEEeEEEEe----------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEE
Confidence 368899999987 4467999999999999999999999999999999999986421001268999999998
Q ss_pred ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625 99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS 170 (612)
Q Consensus 99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS 170 (612)
+.. ....++.++|++|++.+++. |+.||+.+..... ....++..++++.++++.+|+. +..++.+.+||
T Consensus 72 i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 148 (250)
T PRK14266 72 IYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLS 148 (250)
T ss_pred cccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCC
Confidence 643 23457789999999988884 9999998764322 1122334456788999999984 34578899999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.+.+|++++|++|++++.
T Consensus 149 ~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 149 GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999986 68899999999999999999
Q ss_pred cCccCh
Q psy12625 251 GTVPGL 256 (612)
Q Consensus 251 G~~~~~ 256 (612)
|++++.
T Consensus 227 g~~~~~ 232 (250)
T PRK14266 227 GLTDQI 232 (250)
T ss_pred CCHHHH
Confidence 988765
No 215
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=384.46 Aligned_cols=217 Identities=21% Similarity=0.295 Sum_probs=188.6
Q ss_pred EeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch-
Q psy12625 24 QDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH- 102 (612)
Q Consensus 24 ~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~- 102 (612)
+|++++| +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++...
T Consensus 2 ~nl~~~~----------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~ 66 (491)
T PRK10982 2 SNISKSF----------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK-----DSGSILFQGKEIDFKS 66 (491)
T ss_pred CceEEEe----------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----CceEEEECCEECCCCC
Confidence 5788776 456799999999999999999999999999999999999886 689999999986421
Q ss_pred --HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 103 --RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 103 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
...++.++|++|++.+++.+||+||+.+..........+.++..++++++++.+|+.+..++++++|||||||||+||
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred HHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 234678999999998999999999998753211110112334456789999999999889999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|++++.
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999999999888999999999976 67889999999999999999998775
No 216
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-42 Score=348.85 Aligned_cols=223 Identities=18% Similarity=0.249 Sum_probs=188.2
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
+..+.++++++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.++.+.+|+|.++|+
T Consensus 6 ~~~~~~~~~~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~ 75 (261)
T PRK14263 6 PIVMDCKLDKIFY----------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQ 75 (261)
T ss_pred CceEEEEeEEEEe----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCE
Confidence 4568888988877 556799999999999999999999999999999999999876322236899999999
Q ss_pred eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCC
Q psy12625 98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHL 169 (612)
Q Consensus 98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~L 169 (612)
++.. ...+++.++|++|++.++ .+|++||+.+...... . ..+..++++++++.+|+.+ ..++.+++|
T Consensus 76 ~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L 150 (261)
T PRK14263 76 DVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSL 150 (261)
T ss_pred eccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccC
Confidence 8642 124567899999999887 5999999988754321 1 2234567889999999854 345678899
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec------
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT------ 243 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------ 243 (612)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.++||++++|+
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~ 228 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQG 228 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999964 789999999986 5788999999995
Q ss_pred --CCeEEEecCccChh
Q psy12625 244 --EGYCTYQGTVPGLV 257 (612)
Q Consensus 244 --~G~iv~~G~~~~~~ 257 (612)
+|+++..|+++++.
T Consensus 229 ~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 229 TRTGYLVEMGPTAQIF 244 (261)
T ss_pred cCCceEEEeCCHHHHH
Confidence 89999999877653
No 217
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3e-42 Score=372.20 Aligned_cols=229 Identities=24% Similarity=0.340 Sum_probs=199.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++|.. ..+...+++||||++++||++||+|.|||||||+.++|.|++++.. ...+|+|.++|+++
T Consensus 5 lL~V~nL~v~~~~------~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl 77 (539)
T COG1123 5 LLEVENLTVEFAT------DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDL 77 (539)
T ss_pred eEEEeceEEEEec------CCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcch
Confidence 6999999999954 1233579999999999999999999999999999999999998632 34689999999876
Q ss_pred cch-----Hh-hccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc--ccCCC
Q psy12625 100 QDH-----RM-LRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT--LTKHL 169 (612)
Q Consensus 100 ~~~-----~~-~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~~~~L 169 (612)
... .. ..+.|+||||++ .+.|.+|+.+.+.-...... ..+.++.++++.++++++||.+.... ++.+|
T Consensus 78 ~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheL 155 (539)
T COG1123 78 LGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERRDRYPHQL 155 (539)
T ss_pred hcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhhccCCccc
Confidence 432 22 236899999996 56777999999877665543 23467788999999999999887655 99999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|+++|++|||+. -+.++||||++|.+|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 7999999999986 689999999999999999
Q ss_pred EecCccChhh
Q psy12625 249 YQGTVPGLVP 258 (612)
Q Consensus 249 ~~G~~~~~~~ 258 (612)
+.|+++++..
T Consensus 235 E~G~~~~i~~ 244 (539)
T COG1123 235 ETGPTEEILS 244 (539)
T ss_pred EecCHHHHHh
Confidence 9999998865
No 218
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.6e-42 Score=372.64 Aligned_cols=232 Identities=25% Similarity=0.343 Sum_probs=199.1
Q ss_pred ceeEEEEeEEEEEEeecccc-ccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 18 HFNLLFQDISYSALYYDTHS-YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
...++++||++.|.....+. ...+...+++||||++++||++||+|+||||||||.|+|+|+.+| .+|+|.++|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-----~~G~i~~~g 352 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-----SSGSIIFDG 352 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEEeC
Confidence 44688999999996432111 112346799999999999999999999999999999999999987 689999999
Q ss_pred Eec--c--chHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCC
Q psy12625 97 TRL--Q--DHRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHL 169 (612)
Q Consensus 97 ~~~--~--~~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~L 169 (612)
.+. . +....++.+-+|+||+ .+.|.+||++++.-....... ....+.++++.++++.+||.. ..++++++|
T Consensus 353 ~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP~el 430 (539)
T COG1123 353 QDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYPHEL 430 (539)
T ss_pred cccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCchhc
Confidence 772 1 1234667888999986 689999999999887665432 224566778999999999987 689999999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
|||||||++|||||+.+|+++++|||||.||+..+.+++++|+++.+ .|.|.++++||.. .+.++||||.+|++|++|
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEE
Confidence 99999999999999999999999999999999999999999999987 5999999999976 689999999999999999
Q ss_pred EecCccChh
Q psy12625 249 YQGTVPGLV 257 (612)
Q Consensus 249 ~~G~~~~~~ 257 (612)
+.|+.+++.
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 999877664
No 219
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.2e-42 Score=337.76 Aligned_cols=197 Identities=25% Similarity=0.360 Sum_probs=175.1
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~i~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~ 65 (201)
T cd03231 1 LEADELTCER----------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-----LAGRVLLNGGPLD 65 (201)
T ss_pred CEEEEEEEEe----------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEecc
Confidence 4689999887 456799999999999999999999999999999999999886 5899999998864
Q ss_pred ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.. ..+++.++|++|++.+++.+|++||+.+.... . .+++++++++.+|+.+..++++.+||||||||++|
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 136 (201)
T cd03231 66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVAL 136 (201)
T ss_pred cccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHH
Confidence 32 34577899999999999999999999874311 1 24567899999999988999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 242 (612)
||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. +....+|+++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999999999999999888999999999986 567899999877
No 220
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-42 Score=390.80 Aligned_cols=231 Identities=21% Similarity=0.261 Sum_probs=193.9
Q ss_pred eeEEEEeEEEEEEeecc-ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 19 FNLLFQDISYSALYYDT-HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~-~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
..|+++||++.|..... +....+.+.+|+||||+|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-----~~G~I~~~g~ 386 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES-----QGGEIIFNGQ 386 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CCcEEEECCE
Confidence 36999999998832000 00000125699999999999999999999999999999999999986 5899999999
Q ss_pred eccch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCC
Q psy12625 98 RLQDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHL 169 (612)
Q Consensus 98 ~~~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~L 169 (612)
++... ..+++.++||+|++ .+++.+||.|++.+...... ...+++.+++++++++.+||. +..++++++|
T Consensus 387 ~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~L 464 (623)
T PRK10261 387 RIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPHEF 464 (623)
T ss_pred ECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccC
Confidence 86431 23467899999997 58899999999987654321 112344557889999999996 6789999999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||+|++|++|+++
T Consensus 465 SgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIV 543 (623)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999874 899999999976 678999999999999999
Q ss_pred EecCccChh
Q psy12625 249 YQGTVPGLV 257 (612)
Q Consensus 249 ~~G~~~~~~ 257 (612)
+.|+++++.
T Consensus 544 ~~g~~~~i~ 552 (623)
T PRK10261 544 EIGPRRAVF 552 (623)
T ss_pred EecCHHHHh
Confidence 999988763
No 221
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.4e-42 Score=420.08 Aligned_cols=227 Identities=23% Similarity=0.302 Sum_probs=203.2
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
.-.|+++||++.|. .+++.+|+|+|+.|++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+
T Consensus 1935 ~~~L~v~nLsK~Y~--------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p-----tsG~I~i~G~ 2001 (2272)
T TIGR01257 1935 TDILRLNELTKVYS--------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV-----TSGDATVAGK 2001 (2272)
T ss_pred CceEEEEEEEEEEC--------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEECCE
Confidence 34699999999882 1236799999999999999999999999999999999999986 6899999999
Q ss_pred eccc-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 98 RLQD-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 98 ~~~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
++.. ....++.+||+||++.+++.+||+|++.+.+.++ ..++++.+++++++++.+||.+.+|+++++||||||||
T Consensus 2002 ~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqR 2078 (2272)
T TIGR01257 2002 SILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRK 2078 (2272)
T ss_pred ECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHH
Confidence 8743 2345678999999999999999999999877664 23444556778999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
|+||+||+.+|+|++|||||+|||+.+++.+.+.|++++++|+|||+|||+++ ++..+|||+++|++|+++..|+++++
T Consensus 2079 LslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2079 LSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999888999999999976 78899999999999999999999988
Q ss_pred hhHHh
Q psy12625 257 VPYLS 261 (612)
Q Consensus 257 ~~~f~ 261 (612)
...+.
T Consensus 2158 k~~~g 2162 (2272)
T TIGR01257 2158 KSKFG 2162 (2272)
T ss_pred HHHhC
Confidence 77664
No 222
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-42 Score=352.79 Aligned_cols=220 Identities=23% Similarity=0.390 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.|. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~~---------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR---------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL-----ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec---------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEh
Confidence 689999999872 235799999999999999999999999999999999999886 689999999985
Q ss_pred cchHhhccceEEEccCCCCC--CCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQ--ELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
.. ...++.++|++|++.+. ...+++|++.++....... .......+++++++++.+||.+..++++++||||||||
T Consensus 72 ~~-~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 150 (272)
T PRK15056 72 RQ-ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKR 150 (272)
T ss_pred HH-hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHH
Confidence 32 22234699999997652 2347889886542110000 11122345567889999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+++++ +|++++.|+++++
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999999999999999999999999999878999999999976 578899999877 8999999988765
No 223
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.3e-42 Score=339.78 Aligned_cols=204 Identities=24% Similarity=0.280 Sum_probs=179.9
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
+..|+++|+++++ +++.+++++|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+
T Consensus 9 ~~~l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~ 73 (214)
T PRK13543 9 PPLLAAHALAFSR----------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV-----ESGQIQIDGK 73 (214)
T ss_pred cceEEEeeEEEec----------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----CCeeEEECCE
Confidence 3479999999987 446799999999999999999999999999999999999886 6899999999
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
++.. ...++.++|++|++.+++.+|++||+.+....+ .. ..++.++++++.+||.+..++++.+||||||||+
T Consensus 74 ~i~~-~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 146 (214)
T PRK13543 74 TATR-GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRL 146 (214)
T ss_pred Eccc-hhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHH
Confidence 8653 234567999999999999899999998865432 11 1235678899999999889999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+|||+++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++||+. ++.+++|++++++.
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 9999999999999999999999999999999999999888999999999986 68899999998864
No 224
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=7.6e-42 Score=334.03 Aligned_cols=191 Identities=46% Similarity=0.717 Sum_probs=166.3
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEECC
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEINE 96 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~g 96 (612)
..|+++|+++.|... .+...+.+|+|+|+++++||+++|+||||||||||+++|+|+. +| .+|+|.++|
T Consensus 2 ~~l~~~~ls~~~~~~----~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-----~~G~i~~~g 72 (194)
T cd03213 2 VTLSFRNLTVTVKSS----PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-----VSGEVLING 72 (194)
T ss_pred cEEEEEeeEEEEecC----CCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-----CceEEEECC
Confidence 358999999998320 0001367999999999999999999999999999999999998 75 689999999
Q ss_pred EeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 97 ~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
+++.. ...++.++|++|++.+++.+|++||+.+..... +||||||||
T Consensus 73 ~~~~~-~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--------------------------------~LS~G~~qr 119 (194)
T cd03213 73 RPLDK-RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--------------------------------GLSGGERKR 119 (194)
T ss_pred EeCch-HhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--------------------------------cCCHHHHHH
Confidence 98653 345678999999999999999999997643110 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 120 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 120 VSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998789999999999864577899999999999998764
No 225
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1e-42 Score=350.89 Aligned_cols=217 Identities=29% Similarity=0.408 Sum_probs=177.2
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
++++|+++.|.. .+++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 1 l~i~~l~~~~~~-------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~ 68 (238)
T cd03249 1 IEFKNVSFRYPS-------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-----TSGEILLDGVDIR 68 (238)
T ss_pred CeEEEEEEecCC-------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC-----CCCEEEECCEehh
Confidence 468999988721 1235699999999999999999999999999999999999886 6899999998864
Q ss_pred c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHc--CCccccCcccCCCCh
Q psy12625 101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSL--SISTCKNTLTKHLSG 171 (612)
Q Consensus 101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSg 171 (612)
. ....++.++|++|++.+++ .||+||+.+..... ..++..+ .+.+.++.+ |+....++.+.+|||
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~ 142 (238)
T cd03249 69 DLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSG 142 (238)
T ss_pred hcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCH
Confidence 2 2344567999999998876 69999997642211 1111111 123444444 666667888899999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|++. ++ ..||++++|++|++++.|
T Consensus 143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~G~i~~~~ 219 (238)
T cd03249 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQNGQVVEQG 219 (238)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999997 7899999999986 45 489999999999999999
Q ss_pred CccChhh
Q psy12625 252 TVPGLVP 258 (612)
Q Consensus 252 ~~~~~~~ 258 (612)
+.++..+
T Consensus 220 ~~~~~~~ 226 (238)
T cd03249 220 THDELMA 226 (238)
T ss_pred CHHHHhh
Confidence 8766544
No 226
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-42 Score=333.24 Aligned_cols=189 Identities=40% Similarity=0.644 Sum_probs=164.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.|.. ..+++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+.+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~------~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPV------KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA---GVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecC------CCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC---CCcceEEEECCEeh
Confidence 5889999999832 01125799999999999999999999999999999999998641 13689999999986
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
. ...++.++|++|++.+++.+|++||+.+.... + +||||||||++|
T Consensus 74 ~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~-------------~LSgGe~qrv~l 119 (192)
T cd03232 74 D--KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R-------------GLSVEQRKRLTI 119 (192)
T ss_pred H--HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h-------------cCCHHHhHHHHH
Confidence 4 44567899999999999999999999874311 0 899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC-CeEEEec
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYCTYQG 251 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G 251 (612)
||||+.+|+++++||||+|||+.++..+.+.|++++++|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 120 a~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 120 GVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999878999999999986446789999999999 9999865
No 227
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=348.66 Aligned_cols=226 Identities=21% Similarity=0.323 Sum_probs=188.9
Q ss_pred CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625 15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94 (612)
Q Consensus 15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~ 94 (612)
..+...|+++|+++.| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|..+.+.+|+|.+
T Consensus 11 ~~~~~~l~~~~l~~~~----------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 11 SPTQQKSEVNKLNFYY----------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred cCCCceEEEEEEEEEE----------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 3455679999999988 345799999999999999999999999999999999999875211136899999
Q ss_pred CCEecc------chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHHcCCc----cccC
Q psy12625 95 NETRLQ------DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS-RKAKESKVDSIADSLSIS----TCKN 163 (612)
Q Consensus 95 ~g~~~~------~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~lgL~----~~~~ 163 (612)
+|.++. ....+++.++|++|++.+++. |++||+.+..... ... +...++++++.++.+++. +..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 997642 113456789999999998885 9999998765332 111 222345678888888874 4567
Q ss_pred cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
+.+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++||++++|+
T Consensus 157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~ 234 (265)
T PRK14252 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMY 234 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 88999999999999999999999999999999999999999999999999976 689999999976 6788999999999
Q ss_pred CCeEEEecCccCh
Q psy12625 244 EGYCTYQGTVPGL 256 (612)
Q Consensus 244 ~G~iv~~G~~~~~ 256 (612)
+|+++..|+.++.
T Consensus 235 ~G~i~~~g~~~~~ 247 (265)
T PRK14252 235 MGELIEFGATDTI 247 (265)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999987665
No 228
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-42 Score=347.62 Aligned_cols=214 Identities=27% Similarity=0.410 Sum_probs=175.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++|. +.+.+++|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~---------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD---------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-----QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC---------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCCEEEECCEeH
Confidence 478999999872 134699999999999999999999999999999999999886 589999999886
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHH-----HHHHHHHHHc--CCccccCcccCCCC
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE-----SKVDSIADSL--SISTCKNTLTKHLS 170 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LS 170 (612)
.. ...+++.++|++|++.+++. |++||+.+.... ....... ...++.++.+ |+++..++.+.+||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS 141 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLS 141 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCC
Confidence 43 23456789999999988875 999999764211 1111111 1223444444 55556667789999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++. .+ ..||++++|++|++++.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999996 5899999999986 45 56999999999999998
Q ss_pred cCccCh
Q psy12625 251 GTVPGL 256 (612)
Q Consensus 251 G~~~~~ 256 (612)
|+.++.
T Consensus 219 ~~~~~~ 224 (229)
T cd03254 219 GTHDEL 224 (229)
T ss_pred CCHHHH
Confidence 876554
No 229
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=330.05 Aligned_cols=222 Identities=25% Similarity=0.394 Sum_probs=200.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+++++||+++| +.+.+|+++|.++++|.+++|+|||||||||||.+++.+.+. ++|+|+++|.++
T Consensus 1 MI~i~nv~K~y----------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-----d~G~i~i~g~~~ 65 (252)
T COG4604 1 MITIENVSKSY----------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-----DSGEITIDGLEL 65 (252)
T ss_pred CeeehhhhHhh----------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc-----cCceEEEeeeec
Confidence 46789999887 789999999999999999999999999999999999999884 789999999998
Q ss_pred cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
.+. +.+.+.++..-|+......+||+|-+.|+..-.. .....++++..+++.++.++|++..|++..+||||||||.
T Consensus 66 ~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRA 144 (252)
T COG4604 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRA 144 (252)
T ss_pred ccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhh
Confidence 643 5677889999999999999999999999743222 2233466788999999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
-||+.++.+.+.++||||.++||...+.++|+.|+++++ -|+||+++.||.+ ....++|+|+-|++|+++.+|+++++
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHh
Confidence 999999999999999999999999999999999999998 5999999999998 56889999999999999999999987
Q ss_pred hh
Q psy12625 257 VP 258 (612)
Q Consensus 257 ~~ 258 (612)
.+
T Consensus 224 i~ 225 (252)
T COG4604 224 IQ 225 (252)
T ss_pred cC
Confidence 64
No 230
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7.5e-42 Score=341.56 Aligned_cols=192 Identities=28% Similarity=0.354 Sum_probs=166.3
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~ 120 (612)
+++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.. . .+...+.+
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~~~---~-------~~~~~~~~ 97 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-----DSGTVTVRGRVSSL---L-------GLGGGFNP 97 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEchh---h-------cccccCCC
Confidence 667899999999999999999999999999999999999886 68999999987421 1 11233456
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy12625 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD 200 (612)
.+||+||+.+..... .....+.+++++++++.+|+++..++.+++||||||||++|||+|+.+|++++|||||+|||
T Consensus 98 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 98 ELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 799999998865432 12334445678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 201 YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 201 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++|++++.|
T Consensus 175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999877899999999976 577899999999999998765
No 231
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.5e-42 Score=342.82 Aligned_cols=206 Identities=29% Similarity=0.471 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.|. ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~~--------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYP--------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-----TSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcC--------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCCeEEECCEEh
Confidence 378899999872 1235699999999999999999999999999999999999876 689999999886
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc-----------
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT----------- 166 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~----------- 166 (612)
.. ....++.++|++|++.+++ .||.||+.+... ... ++.+.++++.+++.+..++.+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 42 2335678999999998887 699999876321 111 234567888888877666644
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ +|||++||++. .+ ++||++++|++|+
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~ 215 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGR 215 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCe
Confidence 699999999999999999999999999999999999999999999999765 89999999986 44 7999999999999
Q ss_pred EEEec
Q psy12625 247 CTYQG 251 (612)
Q Consensus 247 iv~~G 251 (612)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 98754
No 232
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=353.23 Aligned_cols=226 Identities=21% Similarity=0.305 Sum_probs=187.1
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||++.| +++.+|+++|+++++||+++|+|||||||||||++|+|+.+|....+.+|+|.++|.
T Consensus 43 ~~~l~i~nl~~~~----------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~ 112 (305)
T PRK14264 43 DAKLSVEDLDVYY----------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQ 112 (305)
T ss_pred CceEEEEEEEEEe----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 3469999999987 446799999999999999999999999999999999999863111136899999998
Q ss_pred eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC---------CCCC-HHHHHHHHHHHHHHcCCc----
Q psy12625 98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG---------NQYS-RKAKESKVDSIADSLSIS---- 159 (612)
Q Consensus 98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~---------~~~~-~~~~~~~v~~~l~~lgL~---- 159 (612)
++.. ....++.++|++|++.+++ .||+||+.+....... .... ....+++++++++.+++.
T Consensus 113 ~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 191 (305)
T PRK14264 113 DIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN 191 (305)
T ss_pred EcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh
Confidence 8642 1345678999999998887 5999999986532100 0011 123356788999999884
Q ss_pred cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccce
Q psy12625 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL 239 (612)
Q Consensus 160 ~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v 239 (612)
+..++.+.+||||||||++||+||+.+|+||||||||+|||+.++..+.+.|++++++ .|||+++|++. .+.++||++
T Consensus 192 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~-~i~~~~d~i 269 (305)
T PRK14264 192 DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQ-QAARISDQT 269 (305)
T ss_pred HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHH-HHHHhcCEE
Confidence 4568889999999999999999999999999999999999999999999999999874 89999999986 578899997
Q ss_pred -eeecCCeEEEecCccCh
Q psy12625 240 -YVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 240 -~~L~~G~iv~~G~~~~~ 256 (612)
++|++|++++.|+++++
T Consensus 270 ~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKI 287 (305)
T ss_pred EEEecCCEEEEeCCHHHH
Confidence 57899999999987755
No 233
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6e-42 Score=347.46 Aligned_cols=201 Identities=25% Similarity=0.390 Sum_probs=176.9
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc--hHhhccceEEEccCCCCCCCC
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~l 122 (612)
+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++.. ....++.++|++|++.+++.+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~------~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 84 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP------GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAM 84 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC------CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCc
Confidence 7999999999999999999999999999999999975 27999999998643 234456799999998888889
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhh-------CCCEEEEeCC
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS-------NPSIIFLDEP 195 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~-------~p~illlDEP 195 (612)
|++||+.+.... ....++.+++++++++.+||.+..++.+++||||||||++||+||+. +|++++||||
T Consensus 85 tv~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEP 160 (248)
T PRK03695 85 PVFQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEP 160 (248)
T ss_pred cHHHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCC
Confidence 999999875321 12233345678999999999988999999999999999999999998 6799999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 196 TTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 196 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
|+|||+.++..+.+.|++++++|+|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 161 t~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 161 MNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999878999999999976 57899999999999999999987654
No 234
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.9e-41 Score=343.74 Aligned_cols=220 Identities=23% Similarity=0.280 Sum_probs=181.1
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEECCEe
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEINETR 98 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~g~~ 98 (612)
|+++||++.| +++++|+|+|+++++||+++|+||||||||||+++|+|+. +| .+|+|.++|++
T Consensus 2 i~~~nl~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----~~G~i~~~g~~ 66 (248)
T PRK09580 2 LSIKDLHVSV----------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-----TGGTVEFKGKD 66 (248)
T ss_pred eEEEEEEEEe----------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC-----CceEEEECCCc
Confidence 7899999987 3467999999999999999999999999999999999995 34 68999999987
Q ss_pred ccch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHH-hcc--CCC-CCHHHHHHHHHHHHHHcCCc-cccCcccC-CC
Q psy12625 99 LQDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAH-LKL--GNQ-YSRKAKESKVDSIADSLSIS-TCKNTLTK-HL 169 (612)
Q Consensus 99 ~~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-l~~--~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~L 169 (612)
+... .. .++.++|++|++.+++.+|+.+++..... +.. ... ......++++++.++.+++. +..++.+. +|
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 146 (248)
T PRK09580 67 LLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGF 146 (248)
T ss_pred cccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCC
Confidence 6432 22 23579999999998888888777654321 111 000 11223356778899999995 55677775 79
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-ccceeeecCCeEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM-ADYLYVLTEGYCT 248 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv 248 (612)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++|||+. .+... +|++++|++|+++
T Consensus 147 S~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~ 225 (248)
T PRK09580 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIV 225 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999888899999999976 45555 8999999999999
Q ss_pred EecCccCh
Q psy12625 249 YQGTVPGL 256 (612)
Q Consensus 249 ~~G~~~~~ 256 (612)
+.|+++.+
T Consensus 226 ~~g~~~~~ 233 (248)
T PRK09580 226 KSGDFTLV 233 (248)
T ss_pred EeCCHHHH
Confidence 99988744
No 235
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-41 Score=381.72 Aligned_cols=228 Identities=25% Similarity=0.360 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++|.. ..+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|....+.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~------~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 78 (529)
T PRK15134 5 LLAIENLSVAFRQ------QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL 78 (529)
T ss_pred eEEEeceEEEecC------CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec
Confidence 5899999999831 0113579999999999999999999999999999999999998522223689999999986
Q ss_pred cch--H---hhc-cceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc---ccCcccCC
Q psy12625 100 QDH--R---MLR-KESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST---CKNTLTKH 168 (612)
Q Consensus 100 ~~~--~---~~~-~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~ 168 (612)
... . ..+ +.+||++|++. +++.+|++|++.+...... ..++.+.+++++++++.+||.+ ..++++++
T Consensus 79 ~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~ 156 (529)
T PRK15134 79 LHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ 156 (529)
T ss_pred ccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcc
Confidence 432 1 223 57999999974 6677899999876533211 2334455678999999999976 35889999
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++|||+. .+.++||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 899999999986 57789999999999999
Q ss_pred EEecCccCh
Q psy12625 248 TYQGTVPGL 256 (612)
Q Consensus 248 v~~G~~~~~ 256 (612)
++.|+++++
T Consensus 236 ~~~g~~~~~ 244 (529)
T PRK15134 236 VEQNRAATL 244 (529)
T ss_pred EEeCCHHHH
Confidence 999988765
No 236
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=9.3e-42 Score=381.60 Aligned_cols=220 Identities=27% Similarity=0.374 Sum_probs=188.6
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEEC---
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEIN--- 95 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~--- 95 (612)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+. +| .+|+|.++
T Consensus 1 l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-----~~G~i~~~~~~ 65 (520)
T TIGR03269 1 IEVKNLTKKF----------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-----TSGRIIYHVAL 65 (520)
T ss_pred CEEEEEEEEE----------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC-----CceEEEEeccc
Confidence 4689999987 4567999999999999999999999999999999999996 44 68999997
Q ss_pred --------------------CEecc-------c--h---HhhccceEEEccC-CCCCCCCCHHHHHHHHHHhccCCCCCH
Q psy12625 96 --------------------ETRLQ-------D--H---RMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSR 142 (612)
Q Consensus 96 --------------------g~~~~-------~--~---~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~l~~~~~~~~ 142 (612)
|.++. . . ...++.++|++|+ +.+++.+||+||+.+..... ..+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~ 142 (520)
T TIGR03269 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEG 142 (520)
T ss_pred cccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCH
Confidence 22210 0 0 1245679999997 67888899999998865432 2334
Q ss_pred HHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q psy12625 143 KAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMI 221 (612)
Q Consensus 143 ~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tv 221 (612)
++.+++++++++.+||++..++++++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+||
T Consensus 143 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 222 (520)
T TIGR03269 143 KEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM 222 (520)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 45567899999999999989999999999999999999999999999999999999999999999999999976 58999
Q ss_pred EEEecCCchHHHhcccceeeecCCeEEEecCccChhhH
Q psy12625 222 ICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPY 259 (612)
Q Consensus 222 i~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 259 (612)
|+++||+. .+.++||++++|++|++++.|++++....
T Consensus 223 iivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 223 VLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99999986 57789999999999999999988776554
No 237
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.1e-41 Score=333.86 Aligned_cols=196 Identities=28% Similarity=0.365 Sum_probs=170.6
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~ 65 (198)
T TIGR01189 1 LAARNLACSR----------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-----DSGEVRWNGTALA 65 (198)
T ss_pred CEEEEEEEEE----------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CccEEEECCEEcc
Confidence 4678999887 456799999999999999999999999999999999999886 6899999999864
Q ss_pred ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.. ..+++.++|++|++.+++.+|+.||+.+...... . .+++++++++.+|+.+..++++++||||||||++|
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 138 (198)
T TIGR01189 66 EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G--AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLAL 138 (198)
T ss_pred cchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C--cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHH
Confidence 32 3356789999999988888999999987643321 1 13467889999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 241 (612)
||+++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++.. -.+|+++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999998889999999999853 34677664
No 238
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-41 Score=387.88 Aligned_cols=223 Identities=23% Similarity=0.360 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|.. ..+.+++|+||||++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.++
T Consensus 12 ~l~v~~l~~~y~~------~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p-----~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQ------EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ-----AGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecC------CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCeEEEECCEEe
Confidence 5999999999832 11235799999999999999999999999999999999999986 579999998643
Q ss_pred c------------ch---Hhhc-cceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-
Q psy12625 100 Q------------DH---RMLR-KESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST- 160 (612)
Q Consensus 100 ~------------~~---~~~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~- 160 (612)
. .. ...+ +.+|||+|++ .+++.+||.||+.++..... ..+..+.+++++++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 11 1223 4799999998 67888999999998765421 2344556678999999999953
Q ss_pred --ccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhccc
Q psy12625 161 --CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMAD 237 (612)
Q Consensus 161 --~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D 237 (612)
..++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++++++ |+|||++|||.. .+.++||
T Consensus 159 ~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~ad 237 (623)
T PRK10261 159 QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIAD 237 (623)
T ss_pred hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCC
Confidence 578999999999999999999999999999999999999999999999999999864 999999999976 6789999
Q ss_pred ceeeecCCeEEEecCccCh
Q psy12625 238 YLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 238 ~v~~L~~G~iv~~G~~~~~ 256 (612)
||++|++|++++.|+++++
T Consensus 238 ri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 238 RVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred EEEEeeCCeecccCCHHHh
Confidence 9999999999999988765
No 239
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-41 Score=335.44 Aligned_cols=199 Identities=28% Similarity=0.388 Sum_probs=173.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~ 66 (207)
T PRK13539 2 MLEGEDLACVR----------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-----AAGTIKLDGGDI 66 (207)
T ss_pred EEEEEeEEEEE----------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEeC
Confidence 58999999987 345799999999999999999999999999999999999876 689999999885
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
... ..++.++|++|++.+++.+||+||+.+..... .. .+++++++++.+||.+..++++++||||||||++|
T Consensus 67 ~~~-~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 138 (207)
T PRK13539 67 DDP-DVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVAL 138 (207)
T ss_pred cch-hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHH
Confidence 322 26778999999998888999999998754332 11 12457899999999988899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.. |+++.+..
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 139 ARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 99999999999999999999999999999999999888999999999976 4444 88877743
No 240
>KOG0058|consensus
Probab=100.00 E-value=1.3e-42 Score=379.91 Aligned_cols=218 Identities=27% Similarity=0.414 Sum_probs=185.4
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+|+||+|.|+.. .+.+||+|+||+++|||++||+||||+||||+.++|-.+++| .+|+|.+||+
T Consensus 463 ~G~IeF~~VsFaYP~R-------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P-----tsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR-------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP-----TSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC-------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----CCCeEEECCe
Confidence 4579999999999652 467899999999999999999999999999999999999987 6899999999
Q ss_pred eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHH-----HHHHHHHHHcCCccccCcccC---
Q psy12625 98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE-----SKVDSIADSLSISTCKNTLTK--- 167 (612)
Q Consensus 98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~~~--- 167 (612)
|+.+. ..+|++||+|.|+|.+|. -||+||+.|+.. ..++++.+ ..+.+.+.. +.+-.||.++
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHh--CccccccccCCcc
Confidence 98753 568999999999999997 699999999753 22333322 223334443 4445566665
Q ss_pred -CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 168 -HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 168 -~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
+||||||||++|||||++||+||||||.||+||.++...+-+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|+
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~ 679 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGR 679 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCe
Confidence 6999999999999999999999999999999999999999999998875 499999999976 368999999999999
Q ss_pred EEEecCccChhh
Q psy12625 247 CTYQGTVPGLVP 258 (612)
Q Consensus 247 iv~~G~~~~~~~ 258 (612)
+++.|+.+|+.+
T Consensus 680 V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 680 VVEMGTHDELLS 691 (716)
T ss_pred EEecccHHHHhh
Confidence 999998887753
No 241
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-42 Score=311.17 Aligned_cols=218 Identities=27% Similarity=0.403 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|.++|+++.| +..++|.||+++.+.||.+.++||||||||||+|.|.-+..| .+|+..+.|...
T Consensus 2 sirv~~in~~y----------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p-----~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFY----------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP-----RSGTLNIAGNHF 66 (242)
T ss_pred ceEEccccccc----------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC-----CCCeEEeccccc
Confidence 57889999887 778899999999999999999999999999999999988775 689999877543
Q ss_pred c--c------hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCCh
Q psy12625 100 Q--D------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171 (612)
Q Consensus 100 ~--~------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg 171 (612)
. + ...+|+.+|+|+|+..++|.+||.||+.-+. .+. .+.++++.+.++.++++.+.|.+.+|+.+-.|||
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsg 144 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYPLHLSG 144 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCceeccc
Confidence 1 1 1357899999999999999999999986543 221 1467788888999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
||+|||+|||||+.+|++|++||||++|||.-..++++++++|+..|.|=+++||... .....+.+|+.|.+|++++.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeec
Confidence 9999999999999999999999999999999999999999999999999999999976 567889999999999999999
Q ss_pred CccC
Q psy12625 252 TVPG 255 (612)
Q Consensus 252 ~~~~ 255 (612)
+.+.
T Consensus 224 ~a~~ 227 (242)
T COG4161 224 DASC 227 (242)
T ss_pred chhh
Confidence 8763
No 242
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.3e-42 Score=390.06 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=176.9
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++++||++.+. +++++|+|+|++++|||.+||+||||||||||+++|+|++ | .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~---------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-----~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP---------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-----YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc---------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-----CCcEEEECCEe
Confidence 3699999997652 3467999999999999999999999999999999999998 6 47999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC-----------CccccCcc
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-----------ISTCKNTL 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~~~~~ 165 (612)
+.+ .+.+|+.++||+|++.+|+ .|++||+.++. + +.++ ++++++++..+ ++....+.
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~-~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN----P-DASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 764 3568899999999999997 59999998852 1 2333 23344444443 33333334
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
..+||||||||++|||||+++|+|++||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.||+|++|++|
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G 559 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCC
Confidence 45699999999999999999999999999999999999999999999885 5789999999985 46789999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
++++.|+.+++.
T Consensus 560 ~i~e~G~~~eL~ 571 (588)
T PRK11174 560 QIVQQGDYAELS 571 (588)
T ss_pred eEeecCCHHHHH
Confidence 999999988765
No 243
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-42 Score=345.64 Aligned_cols=214 Identities=28% Similarity=0.414 Sum_probs=175.9
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|++++|. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~---------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYD---------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-----SSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeC---------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCCEEEECCEEhh
Confidence 46889998872 135699999999999999999999999999999999999876 6899999998864
Q ss_pred c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHH-----HHHHHHHHHc--CCccccCcccCCCCh
Q psy12625 101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE-----SKVDSIADSL--SISTCKNTLTKHLSG 171 (612)
Q Consensus 101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSg 171 (612)
. ...+++.++|++|++.+++ .||+||+.+... ........ ..+.+.++.+ |+++..++.+.+|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~ 140 (236)
T cd03253 67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSG 140 (236)
T ss_pred hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCH
Confidence 3 2345678999999998886 699999977531 11111111 1233444444 556666777889999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+ ..||++++|++|+++..|
T Consensus 141 G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 217 (236)
T cd03253 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKDGRIVERG 217 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEeeC
Confidence 999999999999999999999999999999999999999999987 999999999986 45 459999999999999988
Q ss_pred CccChh
Q psy12625 252 TVPGLV 257 (612)
Q Consensus 252 ~~~~~~ 257 (612)
++++..
T Consensus 218 ~~~~~~ 223 (236)
T cd03253 218 THEELL 223 (236)
T ss_pred CHHHHh
Confidence 876543
No 244
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-41 Score=381.69 Aligned_cols=230 Identities=22% Similarity=0.297 Sum_probs=190.8
Q ss_pred eEEEEeEEEEEEeecc-ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 20 NLLFQDISYSALYYDT-HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~-~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
.|+++|+++.|..... ...+.+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~------~~G~i~~~g~~ 348 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEIWFDGQP 348 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC------CCcEEEECCEE
Confidence 5999999998831000 0000023579999999999999999999999999999999999974 47999999988
Q ss_pred ccch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625 99 LQDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS 170 (612)
Q Consensus 99 ~~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 170 (612)
+... ..+++.++|++|++ .+++.+||+||+.++...... ..+..+.+++++++++.+||. +..++++++||
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 427 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFS 427 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCC
Confidence 6431 12356799999997 478889999999886533211 123344556789999999997 57899999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||+. .+.++||++++|++|+++.
T Consensus 428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999874 899999999976 5788999999999999999
Q ss_pred ecCccChh
Q psy12625 250 QGTVPGLV 257 (612)
Q Consensus 250 ~G~~~~~~ 257 (612)
.|+++++.
T Consensus 507 ~~~~~~~~ 514 (529)
T PRK15134 507 QGDCERVF 514 (529)
T ss_pred EcCHHHHh
Confidence 99887653
No 245
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.7e-41 Score=414.05 Aligned_cols=224 Identities=23% Similarity=0.365 Sum_probs=200.7
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.|.. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|++
T Consensus 927 ~~L~I~nLsK~y~~--------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P-----tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP--------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP-----TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC--------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC-----CceEEEECCEE
Confidence 47999999998821 346799999999999999999999999999999999999986 68999999998
Q ss_pred ccc-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 99 LQD-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 99 ~~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
+.. ....|+.+||++|++.+++.+||+||+.+.++++ ..+.++.+++++++++.+||++..++++++|||||||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRL 1070 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKL 1070 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 753 2446788999999999999999999999987664 233445567899999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
+||+||+.+|++++|||||+|||+.+++.+.++|++++ +|+|||++||+++ ++..+|||+++|++|+++..|+++++.
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999995 5899999999986 678899999999999999999998876
Q ss_pred hHH
Q psy12625 258 PYL 260 (612)
Q Consensus 258 ~~f 260 (612)
+.|
T Consensus 1149 ~~~ 1151 (2272)
T TIGR01257 1149 NCF 1151 (2272)
T ss_pred Hhc
Confidence 644
No 246
>KOG0055|consensus
Probab=100.00 E-value=8.8e-41 Score=384.09 Aligned_cols=220 Identities=29% Similarity=0.428 Sum_probs=181.2
Q ss_pred CCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC
Q psy12625 16 RKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95 (612)
Q Consensus 16 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~ 95 (612)
.....++++||.|+|+. ..+..||+|+|+.+++|+.+||+|||||||||++++|.+++.| .+|+|.+|
T Consensus 346 ~~~g~ief~nV~FsYPs-------Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP-----~~G~V~id 413 (1228)
T KOG0055|consen 346 SIKGEIEFRNVCFSYPS-------RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP-----TSGEVLID 413 (1228)
T ss_pred ccccceEEEEEEecCCC-------CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----CCceEEEc
Confidence 34568999999999964 1356899999999999999999999999999999999999987 68999999
Q ss_pred CEeccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHcCCccccCcccC-
Q psy12625 96 ETRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSLSISTCKNTLTK- 167 (612)
Q Consensus 96 g~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~~~- 167 (612)
|.++.+. +.+|.+||.|.|+|.+|. .|++||+.|+.. +.++++.++ .+.+.+.. |.+-.|+.++
T Consensus 414 G~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~-----dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge 485 (1228)
T KOG0055|consen 414 GEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKP-----DATREEIEEAAKAANAHDFILK--LPDGYDTLVGE 485 (1228)
T ss_pred CccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCC-----cccHHHHHHHHHHccHHHHHHh--hHHhhcccccC
Confidence 9998653 668999999999998886 799999988531 122222111 12222222 2333444444
Q ss_pred ---CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 168 ---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 168 ---~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+||||||||++|||||+.||+|||||||||+||+.+...+.+.|++.. +|+|.|+++|+.+ .+ +-+|++++|++
T Consensus 486 ~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tI-rnaD~I~v~~~ 562 (1228)
T KOG0055|consen 486 RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TI-RNADKIAVMEE 562 (1228)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hh-hccCEEEEEEC
Confidence 599999999999999999999999999999999999999999998865 5789999999986 45 55999999999
Q ss_pred CeEEEecCccChhh
Q psy12625 245 GYCTYQGTVPGLVP 258 (612)
Q Consensus 245 G~iv~~G~~~~~~~ 258 (612)
|++++.|+++|+..
T Consensus 563 G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 563 GKIVEQGTHDELIA 576 (1228)
T ss_pred CEEEEecCHHHHHh
Confidence 99999999998865
No 247
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=325.69 Aligned_cols=172 Identities=33% Similarity=0.542 Sum_probs=155.7
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
++++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----~~G~i~~~g~~~~ 65 (173)
T cd03230 1 IEVRNLSKRY----------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-----DSGEIKVLGKDIK 65 (173)
T ss_pred CEEEEEEEEE----------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEEcc
Confidence 4689999887 335699999999999999999999999999999999999876 5899999999864
Q ss_pred ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
+. ..+++.++|++|++.+++.+|+.||+. ||||||||++|
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~---------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 66 KEPEEVKRRIGYLPEEPSLYENLTVRENLK---------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred cchHhhhccEEEEecCCccccCCcHHHHhh---------------------------------------cCHHHHHHHHH
Confidence 32 345678999999999999899999973 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. .+.+.+|++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999888899999999976 57789999999999864
No 248
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1e-41 Score=349.70 Aligned_cols=211 Identities=21% Similarity=0.312 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++.|.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~--------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE--------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC--------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEh
Confidence 4789999999832 34569999999999999999999999999999999999986 369999999987
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCC---------
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH--------- 168 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~--------- 168 (612)
.. ...+++.++|++|++.+++ .|++||+.... ..+ .+++.+.++.+||.+..++.+++
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 2456789999999999997 59999995321 112 23567888999998888887776
Q ss_pred --CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 169 --LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 169 --LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
||||||||++|||||+.+|+|++|||||++||+.+...+.+.|+++. +++|||+++|++. .+. .||||++|++|+
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~ 213 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENK 213 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCe
Confidence 99999999999999999999999999999999999999999999875 5899999999985 454 599999999999
Q ss_pred EEEecCccChhh
Q psy12625 247 CTYQGTVPGLVP 258 (612)
Q Consensus 247 iv~~G~~~~~~~ 258 (612)
+++.|+++++..
T Consensus 214 i~~~g~~~~l~~ 225 (275)
T cd03289 214 VRQYDSIQKLLN 225 (275)
T ss_pred EeecCCHHHHhh
Confidence 999999988754
No 249
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=377.98 Aligned_cols=225 Identities=23% Similarity=0.287 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.|.. .+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| +.+|+|.++|+++
T Consensus 259 ~l~~~~l~~~~~~-------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~----~~~G~i~~~g~~~ 327 (506)
T PRK13549 259 ILEVRNLTAWDPV-------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG----RWEGEIFIDGKPV 327 (506)
T ss_pred eEEEecCcccccc-------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC----CCCcEEEECCEEC
Confidence 5899999987621 1235699999999999999999999999999999999999873 2589999999886
Q ss_pred cch---HhhccceEEEccCC---CCCCCCCHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625 100 QDH---RMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKLGN--QYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS 170 (612)
Q Consensus 100 ~~~---~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 170 (612)
... ...++.++|++|++ .+++.+||.||+.+........ ..++++.+++++++++.+|+. +..++++++||
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 407 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLS 407 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCC
Confidence 421 23456799999995 4788899999998753211100 112334456789999999996 57899999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||+. ++.++||++++|++|+++..
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999986 67899999999999999999
Q ss_pred cCccCh
Q psy12625 251 GTVPGL 256 (612)
Q Consensus 251 G~~~~~ 256 (612)
|+++++
T Consensus 487 ~~~~~~ 492 (506)
T PRK13549 487 LINHNL 492 (506)
T ss_pred eccccC
Confidence 988775
No 250
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.9e-41 Score=337.82 Aligned_cols=206 Identities=25% Similarity=0.307 Sum_probs=172.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|+++++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP--------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL-----SSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC--------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CCCEEEECCEEh
Confidence 4789999998731 335799999999999999999999999999999999999876 689999999986
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-----------cCccc
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-----------KNTLT 166 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~ 166 (612)
.. ...+++.++|++|++.+++ .||+||+.+.. ... .+++.+.++.+++.+. .++.+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 137 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVEEGG 137 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 43 2346778999999998776 69999986421 111 2234555666665543 35678
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+. .||++++|++|+
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~ 214 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDKGR 214 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEECCe
Confidence 89999999999999999999999999999999999999999999999864 689999999986 454 599999999999
Q ss_pred EEEecC
Q psy12625 247 CTYQGT 252 (612)
Q Consensus 247 iv~~G~ 252 (612)
+++.|+
T Consensus 215 ~~~~~~ 220 (221)
T cd03244 215 VVEFDS 220 (221)
T ss_pred EEecCC
Confidence 998875
No 251
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3e-41 Score=377.54 Aligned_cols=224 Identities=21% Similarity=0.276 Sum_probs=188.9
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC-CE
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN-ET 97 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~-g~ 97 (612)
..|+++||++.|... +.+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++ |.
T Consensus 278 ~~l~~~~l~~~~~~~-----~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~g~ 347 (520)
T TIGR03269 278 PIIKVRNVSKRYISV-----DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-----TSGEVNVRVGD 347 (520)
T ss_pred ceEEEeccEEEeccC-----CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEEecCC
Confidence 369999999988310 01235699999999999999999999999999999999999886 58999996 53
Q ss_pred e---ccc-----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----ccCc
Q psy12625 98 R---LQD-----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----CKNT 164 (612)
Q Consensus 98 ~---~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~ 164 (612)
+ +.. ....++.++|++|++.+++.+||+||+.+...+. .+++..+++++++++.+||.+ ..++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 423 (520)
T TIGR03269 348 EWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK 423 (520)
T ss_pred ccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC
Confidence 2 111 1134567999999999999999999998754321 223334567889999999975 5789
Q ss_pred ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec
Q psy12625 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+. .+.++||++++|+
T Consensus 424 ~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~ 502 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMR 502 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999986 4899999999986 6788999999999
Q ss_pred CCeEEEecCccChh
Q psy12625 244 EGYCTYQGTVPGLV 257 (612)
Q Consensus 244 ~G~iv~~G~~~~~~ 257 (612)
+|+++..|+++++.
T Consensus 503 ~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 503 DGKIVKIGDPEEIV 516 (520)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999877653
No 252
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-41 Score=330.51 Aligned_cols=195 Identities=24% Similarity=0.375 Sum_probs=170.9
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++++ +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDY----------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-----EKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEe----------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeeEEECCCccc
Confidence 7899999987 446799999999999999999999999999999999999886 6899999998864
Q ss_pred c-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 101 D-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 101 ~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
. ...+++.++|++|++.+++.+||+||+.+..... . .+.+++++++.+++.+..++++++||||||||++|
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~l 138 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVAL 138 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHH
Confidence 3 2446778999999998888999999998764211 1 12468899999999888899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccccee
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLY 240 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 240 (612)
||+++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++.. .+.+|...
T Consensus 139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999999999999999999999998789999999999753 56677544
No 253
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.3e-41 Score=335.99 Aligned_cols=210 Identities=26% Similarity=0.329 Sum_probs=174.1
Q ss_pred EEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC--CE
Q psy12625 21 LLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ET 97 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~--g~ 97 (612)
|+++|+++.|... .+.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++ |+
T Consensus 2 l~~~~l~~~~~~~----~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~~~g~ 72 (224)
T TIGR02324 2 LEVEDLSKTFTLH----QQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-----DSGRILVRHEGA 72 (224)
T ss_pred EEEEeeEEEeecc----cCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCeEEEecCCC
Confidence 7899999988320 0001 25799999999999999999999999999999999999886 57999998 42
Q ss_pred --eccc--hH---hh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCC
Q psy12625 98 --RLQD--HR---ML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKH 168 (612)
Q Consensus 98 --~~~~--~~---~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~ 168 (612)
++.. .. .. ++.++|++|++.+++.+||+|++.+..... ...+...++++.++++.+|+.+ ..++++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (224)
T TIGR02324 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPAT 149 (224)
T ss_pred ccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCccc
Confidence 3321 11 12 357999999999999999999998754322 2233344567889999999986 45889999
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||+++.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999999878999999999964 5667999998764
No 254
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-41 Score=361.81 Aligned_cols=223 Identities=26% Similarity=0.324 Sum_probs=200.1
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...++++|++|+| +..++|+||||++++||++||+|.||||||||+|+|+|.++| ++|+|.+||+
T Consensus 6 ~~ll~~~~i~K~F----------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p-----~~G~I~~~G~ 70 (500)
T COG1129 6 PPLLELRGISKSF----------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP-----DSGEILIDGK 70 (500)
T ss_pred cceeeeecceEEc----------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC-----CCceEEECCE
Confidence 3468999999998 678899999999999999999999999999999999999986 6899999999
Q ss_pred ecc--ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625 98 RLQ--DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL-GNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 98 ~~~--~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 173 (612)
+.. ++ ......|+.|+|+..+.|++||.||+.++..... ..-++.+..++++.++|+.+|+....++++++||+||
T Consensus 71 ~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~Lsiaq 150 (500)
T COG1129 71 PVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQ 150 (500)
T ss_pred EccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHH
Confidence 864 22 4456789999999999999999999988755433 1235567778889999999999656899999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
||.|+|||||..+++|++||||||.|+......+.+.+++|+++|.+||++||... +++++|||+.+|+||+.+..++.
T Consensus 151 rQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 151 RQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999999999999999999999999976 79999999999999999999883
Q ss_pred -cCh
Q psy12625 254 -PGL 256 (612)
Q Consensus 254 -~~~ 256 (612)
++.
T Consensus 230 ~~~~ 233 (500)
T COG1129 230 AAET 233 (500)
T ss_pred ccCC
Confidence 543
No 255
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=376.74 Aligned_cols=218 Identities=22% Similarity=0.369 Sum_probs=185.6
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.+ + .+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++
T Consensus 264 ~~l~~~~l~~~~----------~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~g~~ 326 (510)
T PRK09700 264 TVFEVRNVTSRD----------R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR-----AGGEIRLNGKD 326 (510)
T ss_pred cEEEEeCccccC----------C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CCCeEEECCEE
Confidence 369999998643 2 389999999999999999999999999999999999886 58999999988
Q ss_pred ccch---HhhccceEEEccC---CCCCCCCCHHHHHHHHHHhc---cCC--C-CCHHHHHHHHHHHHHHcCCc-cccCcc
Q psy12625 99 LQDH---RMLRKESCYIMQD---NLLQELLTVEESLTVAAHLK---LGN--Q-YSRKAKESKVDSIADSLSIS-TCKNTL 165 (612)
Q Consensus 99 ~~~~---~~~~~~i~yv~Q~---~~l~~~lTv~e~l~~~~~l~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ 165 (612)
+... ...++.++|++|+ ..+++.+||+||+.+....+ ... . ......+++++++++.+|+. +..+++
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 406 (510)
T PRK09700 327 ISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN 406 (510)
T ss_pred CCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc
Confidence 6431 2345689999998 46888999999998753211 000 0 12223345688999999997 788999
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
+++|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+.++||++++|++|
T Consensus 407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G 485 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEG 485 (510)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999888999999999986 678999999999999
Q ss_pred eEEEecCcc
Q psy12625 246 YCTYQGTVP 254 (612)
Q Consensus 246 ~iv~~G~~~ 254 (612)
+++..++..
T Consensus 486 ~i~~~~~~~ 494 (510)
T PRK09700 486 RLTQILTNR 494 (510)
T ss_pred EEEEEecCc
Confidence 999988763
No 256
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.8e-41 Score=341.95 Aligned_cols=201 Identities=24% Similarity=0.386 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~----------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-----~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSF----------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-----DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEE----------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCc--
Confidence 58999999987 446799999999999999999999999999999999999886 6899999862
Q ss_pred cchHhhccceEEEccCCCCCCCC--CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELL--TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~l--Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
..++|++|++.+++.+ |+.+++.+. ... .++++.++++.+|+.+..++++.+||||||||+
T Consensus 67 -------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv 129 (251)
T PRK09544 67 -------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGT----KKEDILPALKRVQAGHLIDAPMQKLSGGETQRV 129 (251)
T ss_pred -------cCEEEeccccccccccChhHHHHHhcc------ccc----cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHH
Confidence 3599999998877754 777766431 111 134578899999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++ +++..|+++++
T Consensus 130 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 130 LLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 9999999999999999999999999999999999999875 899999999986 67889999999965 78999988765
No 257
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.2e-41 Score=340.45 Aligned_cols=214 Identities=24% Similarity=0.390 Sum_probs=175.5
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...++++|+++.|.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+
T Consensus 9 ~~~l~~~~l~~~~~~-------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~ 76 (226)
T cd03248 9 KGIVKFQNVTFAYPT-------RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-----QGGQVLLDGK 76 (226)
T ss_pred CceEEEEEEEEEeCC-------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCcEEEECCC
Confidence 446999999999831 1124699999999999999999999999999999999999886 6899999998
Q ss_pred eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc--CCccccCcccCCCChhh
Q psy12625 98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~~~~LSgGe 173 (612)
++.. ....++.++|++|++.+++ .||+||+.+...........+...+..++++++.+ |+++..++++.+|||||
T Consensus 77 ~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~ 155 (226)
T cd03248 77 PISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQ 155 (226)
T ss_pred chHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHH
Confidence 7632 2345678999999998876 69999997653211000000111122357888888 88888899999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+ ..||++++|++|++
T Consensus 156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~i 226 (226)
T cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999999875 689999999986 45 45999999999874
No 258
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-42 Score=366.85 Aligned_cols=215 Identities=29% Similarity=0.431 Sum_probs=185.3
Q ss_pred CCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC
Q psy12625 16 RKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95 (612)
Q Consensus 16 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~ 95 (612)
.+++.++.+|+++.|+. + +++++|+|+++++|+.+||+|+||||||||+++|+|+.+| ++|+|.+|
T Consensus 316 ~~~~ei~~~~l~~~y~~--------g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~-----~~G~I~vn 381 (559)
T COG4988 316 EPPIEISLENLSFRYPD--------G-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP-----TQGEIRVN 381 (559)
T ss_pred CCCceeeecceEEecCC--------C-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC-----CCceEEEC
Confidence 34667778899999842 3 3899999999999999999999999999999999999986 68999999
Q ss_pred CEeccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccC------cccC
Q psy12625 96 ETRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN------TLTK 167 (612)
Q Consensus 96 g~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------~~~~ 167 (612)
|.+..+. ..++++++||+|+|.+++ -|++||+.++.. . ..++.+.+++++.|+.+..+ +.++
T Consensus 382 g~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~-----~----~s~e~i~~al~~a~l~~~v~~p~GLdt~ig 451 (559)
T COG4988 382 GIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARP-----D----ASDEEIIAALDQAGLLEFVPKPDGLDTVIG 451 (559)
T ss_pred CccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCC-----c----CCHHHHHHHHHHhcHHHhhcCCCcccchhc
Confidence 9987653 678999999999999987 699999987521 1 12456777777777765443 3343
Q ss_pred ----CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 168 ----HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 168 ----~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
+|||||+|||++||||+.+++++++||||++||.++.+.|.+.|.+++++ +|++++||++. ...-+|+|++|+
T Consensus 452 e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 452 EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChH--HHhcCCEEEEec
Confidence 49999999999999999999999999999999999999999999999875 89999999975 367899999999
Q ss_pred CCeEEEecCccChh
Q psy12625 244 EGYCTYQGTVPGLV 257 (612)
Q Consensus 244 ~G~iv~~G~~~~~~ 257 (612)
+|+++..|.++++.
T Consensus 529 ~G~l~~~g~~~~L~ 542 (559)
T COG4988 529 NGRLVEQGTHEELS 542 (559)
T ss_pred CCceeccCCHHHHh
Confidence 99999999998874
No 259
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=339.38 Aligned_cols=220 Identities=20% Similarity=0.246 Sum_probs=187.6
Q ss_pred eeEEEEeEEEEEEeeccc---------cc-cccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCc
Q psy12625 19 FNLLFQDISYSALYYDTH---------SY-SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN 88 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~---------~~-~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~ 88 (612)
+.|+++||++.|...... .+ ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-----~ 77 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP-----T 77 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----C
Confidence 578999999999764210 01 22456799999999999999999999999999999999999886 6
Q ss_pred eeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCC
Q psy12625 89 SGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH 168 (612)
Q Consensus 89 ~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~ 168 (612)
+|+|.++|+ +++++|+..+.+.+|+.||+.+..... ..+.++..+.++++++.+++.+..++.+++
T Consensus 78 ~G~I~~~g~-----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (264)
T PRK13546 78 VGKVDRNGE-----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKK 143 (264)
T ss_pred ceEEEECCE-----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCccc
Confidence 899999985 346677777778899999998764332 223344455678889999999999999999
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999878999999999975 577899999999999999
Q ss_pred EecCccChhh
Q psy12625 249 YQGTVPGLVP 258 (612)
Q Consensus 249 ~~G~~~~~~~ 258 (612)
..|+++++.+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9998876644
No 260
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=5.3e-41 Score=326.89 Aligned_cols=181 Identities=27% Similarity=0.387 Sum_probs=157.1
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc----hHhhccceEEEccCC
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD----HRMLRKESCYIMQDN 116 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~----~~~~~~~i~yv~Q~~ 116 (612)
+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.. ...+++.++|++|++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 77 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP-----QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence 346799999999999999999999999999999999999886 68999999998631 124567899999997
Q ss_pred C-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC
Q psy12625 117 L-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP 195 (612)
Q Consensus 117 ~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP 195 (612)
. .+...||+||+.+..... ..+.++.+++++++++.+||.+..++++.+||||||||++|||||+.+|++++||||
T Consensus 78 ~~~~~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 78 DDQLFAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred hhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3 233479999998865432 223344556789999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 196 TTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 196 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
|+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999888999999999975
No 261
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.3e-41 Score=392.25 Aligned_cols=210 Identities=28% Similarity=0.387 Sum_probs=180.2
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+|+|+. .++++|+|+|+++++||.+||+||||||||||+|+|+|+++| .+|+|.+||++
T Consensus 450 ~~I~~~nvsf~Y~~--------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-----~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP--------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP-----ESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC--------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCEEEECCEE
Confidence 36999999999832 346799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-------Cccc---
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-------NTLT--- 166 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~~--- 166 (612)
+.+ ...+|+.+|||+|++.+|+ -|++||+.++.. .+ ++++.++++..|+.+.. |+.+
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~------~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP------LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 864 3678999999999999987 599999987421 12 34466667777665432 3333
Q ss_pred -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.+||||||||++|||||+++|++++||||||+||+.+.+++.+.|+++ ++|+|+++|+++ ..+.+|+|++|++|
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G 660 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAG 660 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999886 579999999985 46789999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
++++.|+.+++.
T Consensus 661 ~iv~~G~~~~Ll 672 (686)
T TIGR03797 661 RVVQQGTYDELM 672 (686)
T ss_pred EEEEECCHHHHH
Confidence 999999988764
No 262
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.1e-41 Score=380.67 Aligned_cols=218 Identities=27% Similarity=0.394 Sum_probs=184.3
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++++|++++|+. +++++|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 315 ~~i~~~~v~~~y~~--------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPG--------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP-----TSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCC--------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEe
Confidence 46999999999832 346799999999999999999999999999999999999986 68999999998
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHH-----HHHHHHHHHHc--CCccccCcccCCC
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-----ESKVDSIADSL--SISTCKNTLTKHL 169 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~~~~L 169 (612)
+.+ ...+++.++||+|++.+++. |++||+.+.. ...++++. ....++.++.+ |++...++...+|
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L 455 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATL 455 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCC
Confidence 754 35678899999999999985 9999997532 11222221 12245566666 6666666777889
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||++|||||+++|++++|||||||||+.++.++.+.|+++.++|+|+|+++|+++ ..+.||++++|++|++++
T Consensus 456 SgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIAR 533 (544)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999998767899999999985 357899999999999999
Q ss_pred ecCccChh
Q psy12625 250 QGTVPGLV 257 (612)
Q Consensus 250 ~G~~~~~~ 257 (612)
.|+.+++.
T Consensus 534 ~g~~~~l~ 541 (544)
T TIGR01842 534 FGERDEVL 541 (544)
T ss_pred eCCHHHHh
Confidence 99887653
No 263
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5.2e-41 Score=329.72 Aligned_cols=190 Identities=25% Similarity=0.335 Sum_probs=162.9
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEECCEe
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEINETR 98 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~g~~ 98 (612)
++++|+++.| +++.+++|+|+++++||+++|+||||||||||+++|+|+. +| .+|+|.++|++
T Consensus 1 l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-----~~G~i~~~g~~ 65 (200)
T cd03217 1 LEIKDLHVSV----------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-----TEGEILFKGED 65 (200)
T ss_pred CeEEEEEEEe----------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-----CccEEEECCEE
Confidence 4689999887 3457999999999999999999999999999999999995 43 68999999998
Q ss_pred ccch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 99 LQDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 99 ~~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
+.+. .. .++.++|++|++.+++..|+++++ ++...+|||||||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~~~~LS~G~~q 111 (200)
T cd03217 66 ITDLPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYVNEGFSGGEKK 111 (200)
T ss_pred CCcCCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhccccCCHHHHH
Confidence 7542 22 245699999999888888888766 1122579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-cccceeeecCCeEEEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN-MADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~ 254 (612)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+ .+|++++|++|++++.|+.+
T Consensus 112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH
Confidence 999999999999999999999999999999999999999877899999999986 5555 79999999999999999444
Q ss_pred ChhhHHh
Q psy12625 255 GLVPYLS 261 (612)
Q Consensus 255 ~~~~~f~ 261 (612)
+..++.
T Consensus 191 -~~~~~~ 196 (200)
T cd03217 191 -LALEIE 196 (200)
T ss_pred -HHhhhc
Confidence 544443
No 264
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-41 Score=324.77 Aligned_cols=173 Identities=35% Similarity=0.551 Sum_probs=156.0
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++++++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRY----------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-----DSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEE----------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcc
Confidence 4689999887 346799999999999999999999999999999999999886 6899999998864
Q ss_pred c----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 101 D----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 101 ~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
+ ....++.++|++|++.+++.+|++||+.+. ||||||||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------------------------------------lS~G~~qr 108 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-------------------------------------LSGGQQQR 108 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec-------------------------------------CCHHHHHH
Confidence 3 234567899999999999889999987542 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.+|++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999886 899999999975 5777999999999885
No 265
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.3e-41 Score=375.82 Aligned_cols=210 Identities=21% Similarity=0.267 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++|++++| +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-----~~G~i~~~~~~~ 67 (490)
T PRK10938 3 SLQISQGTFRL----------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL-----LSGERQSQFSHI 67 (490)
T ss_pred eEEEEeEEEEc----------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----CCceEEECCccc
Confidence 58999999988 445699999999999999999999999999999999999886 689999999765
Q ss_pred cc--hHhhccceEEEccCCCC--C------CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625 100 QD--HRMLRKESCYIMQDNLL--Q------ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL 169 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l--~------~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L 169 (612)
.. ....++.++|++|++.. + ..+||+|++.+. ...+++++++++.+||++..++++++|
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~L 136 (490)
T PRK10938 68 TRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKYL 136 (490)
T ss_pred ccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcccC
Confidence 32 23345679999998643 1 146888876431 123457889999999999999999999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|+++.
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999986 6789999999999999999
Q ss_pred ecCccCh
Q psy12625 250 QGTVPGL 256 (612)
Q Consensus 250 ~G~~~~~ 256 (612)
.|++++.
T Consensus 216 ~~~~~~~ 222 (490)
T PRK10938 216 TGEREEI 222 (490)
T ss_pred eCCHHHH
Confidence 9987754
No 266
>KOG0057|consensus
Probab=100.00 E-value=1.1e-41 Score=360.78 Aligned_cols=216 Identities=26% Similarity=0.361 Sum_probs=182.8
Q ss_pred CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625 15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94 (612)
Q Consensus 15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~ 94 (612)
..++-.|+|+||++.|. .+++||+++||+|++||-+||+|+|||||||++|+|.++.. .+|+|.+
T Consensus 346 ~~~~~~I~F~dV~f~y~---------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~I 410 (591)
T KOG0057|consen 346 ELFGGSIEFDDVHFSYG---------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILI 410 (591)
T ss_pred ccCCCcEEEEeeEEEeC---------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEE
Confidence 34455699999999982 23459999999999999999999999999999999999976 5899999
Q ss_pred CCEeccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc--------
Q psy12625 95 NETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT-------- 164 (612)
Q Consensus 95 ~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------- 164 (612)
||+++.+ .+.+|+.|||||||..+|. -||.+|+.++.. ..+ .++|.++.+..|+.+.-.+
T Consensus 411 dG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn~-----sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~ 480 (591)
T KOG0057|consen 411 DGQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGNP-----SAS----DEEVVEACKRAGLHDVISRLPDGYQTL 480 (591)
T ss_pred CCeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCCC-----CcC----HHHHHHHHHHcCcHHHHHhccccchhh
Confidence 9999864 3678999999999999987 699999988632 122 3345566666666543322
Q ss_pred ---ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee
Q psy12625 165 ---LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241 (612)
Q Consensus 165 ---~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 241 (612)
+...|||||||||+||||++.||+|+++|||||.||..+..++++.+.+ ...++|+|++.|+.+ ...-||+|++
T Consensus 481 VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~--ll~~~DkI~~ 557 (591)
T KOG0057|consen 481 VGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD--LLKDFDKIIV 557 (591)
T ss_pred HhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch--hHhcCCEEEE
Confidence 2335999999999999999999999999999999999999999999999 346899999999975 5789999999
Q ss_pred ecCCeEEEecCccChhh
Q psy12625 242 LTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 242 L~~G~iv~~G~~~~~~~ 258 (612)
|++|++...|+.+++..
T Consensus 558 l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 558 LDNGTVKEYGTHSELLA 574 (591)
T ss_pred EECCeeEEeccHHHHhh
Confidence 99999999999998865
No 267
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.7e-41 Score=383.43 Aligned_cols=217 Identities=32% Similarity=0.443 Sum_probs=182.6
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.|+ +++++|+|+|+++++||.+||+||||||||||+++|.|+.+| .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~---------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-----~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYP---------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-----TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcC---------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----CCCeEEECCEe
Confidence 4699999999982 257899999999999999999999999999999999999986 68999999999
Q ss_pred ccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHc--CCccccCcccCCC
Q psy12625 99 LQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSL--SISTCKNTLTKHL 169 (612)
Q Consensus 99 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~L 169 (612)
+.+. ..+|+.++||+|++.+|. -||+||+.++.. +.++++..+ .+.+.++.+ |++...+....+|
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~L 466 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccC
Confidence 8653 678999999999999998 899999998632 123332222 234445554 4444444444579
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||++||||++.+|++++||||||+||+.+...+.+.++++. +++|+++++|.++ .+ +.+|+|++|++|++++
T Consensus 467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti-~~aD~IiVl~~G~i~e 543 (567)
T COG1132 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TI-KNADRIIVLDNGRIVE 543 (567)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999887 5679999999986 34 4599999999999999
Q ss_pred ecCccChhh
Q psy12625 250 QGTVPGLVP 258 (612)
Q Consensus 250 ~G~~~~~~~ 258 (612)
.|+++++..
T Consensus 544 ~G~h~eLl~ 552 (567)
T COG1132 544 RGTHEELLA 552 (567)
T ss_pred ecCHHHHHH
Confidence 999998765
No 268
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.3e-41 Score=393.98 Aligned_cols=212 Identities=27% Similarity=0.343 Sum_probs=178.6
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+|+|+. .++++|+|+|+++++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~--------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-----~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP--------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP-----WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC--------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEe
Confidence 46999999999832 346799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCcc
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNTL 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~ 165 (612)
+.+ ...+|+.++||+|++.+|+ .|++||+.++. + ..+ ++++.++++..|+.+ .....
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 754 3568999999999999986 69999998641 1 222 233445555555443 22333
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
..+||||||||++|||||+++|++++||||||+||+.+..++.+.|++ .++|+|+++|+++ ....||+|++|++|
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G 687 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERG 687 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCC
Confidence 456999999999999999999999999999999999999999999976 4799999999985 35779999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
++++.|+.+++.+
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999887754
No 269
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.5e-41 Score=373.17 Aligned_cols=225 Identities=22% Similarity=0.298 Sum_probs=189.2
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.|.. .+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| +.+|+|.++|++
T Consensus 256 ~~l~~~~l~~~~~~-------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p----~~~G~i~~~g~~ 324 (500)
T TIGR02633 256 VILEARNLTCWDVI-------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG----KFEGNVFINGKP 324 (500)
T ss_pred ceEEEeCCcccccc-------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC----CCCeEEEECCEE
Confidence 36999999987511 0235699999999999999999999999999999999999874 257999999988
Q ss_pred ccc--h-HhhccceEEEccCC---CCCCCCCHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCC
Q psy12625 99 LQD--H-RMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKLG--NQYSRKAKESKVDSIADSLSIST-CKNTLTKHL 169 (612)
Q Consensus 99 ~~~--~-~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~L 169 (612)
+.. . ...++.++|++|+. .+++.+||+||+.++..-... ........+++++++++.+|+.+ ..++++++|
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 404 (500)
T TIGR02633 325 VDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRL 404 (500)
T ss_pred CCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccC
Confidence 642 1 34567899999995 588899999999875321110 01223334567899999999974 679999999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++|||+. ++.++||++++|++|+++.
T Consensus 405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999986 6889999999999999998
Q ss_pred ecCccC
Q psy12625 250 QGTVPG 255 (612)
Q Consensus 250 ~G~~~~ 255 (612)
.++.++
T Consensus 484 ~~~~~~ 489 (500)
T TIGR02633 484 DFVNHA 489 (500)
T ss_pred EEcccc
Confidence 876654
No 270
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=382.61 Aligned_cols=214 Identities=25% Similarity=0.375 Sum_probs=180.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+|+|+. +++++|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~--------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p-----~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG--------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-----DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC--------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC-----CCceEEECCEE
Confidence 36999999999832 346799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT--- 166 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~--- 166 (612)
+.+ ...+++.++||+|++.+|+ -|++||+.++. +...+ +++++++++..|+.+. .|+.+
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 754 3567889999999999997 69999998742 11122 3345556666654332 24444
Q ss_pred -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.+||||||||++|||||+++|++++||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.||+|++|++|
T Consensus 478 g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g 554 (582)
T PRK11176 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDG 554 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECC
Confidence 4599999999999999999999999999999999999999999999885 4689999999985 46889999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
++++.|+.+++.
T Consensus 555 ~i~e~g~~~~l~ 566 (582)
T PRK11176 555 EIVERGTHAELL 566 (582)
T ss_pred EEEEeCCHHHHH
Confidence 999999988764
No 271
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.2e-41 Score=382.14 Aligned_cols=211 Identities=26% Similarity=0.370 Sum_probs=181.1
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++++|+++.|+ +++++|+|+|+++++||.++|+|+||||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~---------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-----~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYR---------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-----TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeC---------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCceEEECCEE
Confidence 4699999999983 235699999999999999999999999999999999999987 58999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-------Cccc---
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-------NTLT--- 166 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~~--- 166 (612)
+.+ .+.+++.++||+|++.+|+. |++||+.++. ..+ +++++++++..|+.+.. |+.+
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 754 36789999999999999985 9999998852 122 23466677777665432 3333
Q ss_pred -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.+||||||||++|||||+.+|+|++||||||+||+.+.+.+.+.|+++.+ ++|+|+++|+++ ....||+|++|++|
T Consensus 474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G 550 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRG 550 (592)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999865 589999999985 46789999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
+++..|+.+++.
T Consensus 551 ~i~~~G~~~~L~ 562 (592)
T PRK10790 551 QAVEQGTHQQLL 562 (592)
T ss_pred EEEEEcCHHHHH
Confidence 999999998775
No 272
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.7e-41 Score=390.20 Aligned_cols=214 Identities=24% Similarity=0.404 Sum_probs=180.9
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|+. +++++|+|+|+++++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~--------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p-----~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG--------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP-----TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC--------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEE
Confidence 46999999999832 346799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCcc
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNTL 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~ 165 (612)
+.+ ...+|+.++||+|++.+|+ .|++||+.++. + ..+ ++++.++++..|+.+ ..++.
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 754 3568999999999999987 59999998742 1 122 234455555555433 23333
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
..+||||||||++|||||+++|++++||||||+||+.+..++.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G 675 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCC
Confidence 446999999999999999999999999999999999999999999999864 789999999985 46889999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
++++.|+.+++.+
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999887755
No 273
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.9e-41 Score=379.69 Aligned_cols=214 Identities=27% Similarity=0.429 Sum_probs=183.9
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.|+. +++++|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~--------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p-----~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD--------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-----QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC--------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEE
Confidence 46999999999832 335799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccC------cc----c
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN------TL----T 166 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------~~----~ 166 (612)
+.+ ...+|+.++||+|++.+|+ .|++||+.++. + .. .++.+++.++..|+++..+ +. .
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g 473 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCC
Confidence 764 3567899999999999987 59999998752 1 11 2456778888888876543 33 3
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
.+||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++. ...||++++|++|+
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~ 550 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQ 550 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCe
Confidence 4599999999999999999999999999999999999999999999986 57999999999863 46799999999999
Q ss_pred EEEecCccChhh
Q psy12625 247 CTYQGTVPGLVP 258 (612)
Q Consensus 247 iv~~G~~~~~~~ 258 (612)
+++.|+.+++.+
T Consensus 551 i~~~g~~~~l~~ 562 (574)
T PRK11160 551 IIEQGTHQELLA 562 (574)
T ss_pred EEEeCCHHHHHh
Confidence 999999877643
No 274
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-40 Score=327.29 Aligned_cols=200 Identities=24% Similarity=0.308 Sum_probs=167.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++|.. ..+.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~~~--------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAP--------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA-----EEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCC--------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCCeEEECCEEh
Confidence 5899999998721 224699999999999999999999999999999999999886 689999999986
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
.. ....++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ .++.+.+||||||||+
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv 134 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR-------VSEGGLNLSQGQRQLL 134 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHH
Confidence 43 2345678999999998887 59999996421 1111 22333333 3677899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++. .+. .+|++++|++|+++..|++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TII-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999985 5899999999986 454 4999999999999988764
No 275
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.9e-41 Score=389.70 Aligned_cols=213 Identities=30% Similarity=0.424 Sum_probs=178.6
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+|+|+ +++++|+|+|+++++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~---------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-----~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYG---------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-----RSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcC---------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEECCEE
Confidence 3699999999982 246799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCcc----
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTL---- 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~---- 165 (612)
+.+ ...+|+.+|||+|++.+|+ .|++||+.++.. ...++ +++.++++..|+.+. .|+.
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 754 3568899999999999987 599999987521 11222 334455555554322 2333
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
..+||||||||++|||||+++|++++||||||+||+.+...+.+.|+++ +++|+|+++|+++ ..+.||+|++|++|
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G 684 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHG 684 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECC
Confidence 3469999999999999999999999999999999999999999999985 4789999999985 46889999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
++++.|+.+++.+
T Consensus 685 ~i~~~G~~~~L~~ 697 (708)
T TIGR01193 685 KIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCHHHHHh
Confidence 9999999887653
No 276
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.9e-40 Score=320.96 Aligned_cols=173 Identities=28% Similarity=0.467 Sum_probs=155.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++| +|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~--------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVKG--------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-----ASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEEe--------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEC
Confidence 58899998753 79999999999999999999999999999999999886 689999999886
Q ss_pred cch---HhhccceEEEccCC---CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625 100 QDH---RMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 100 ~~~---~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 173 (612)
... ...++.++|++|++ .+++.+|++||+.+... |||||
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----------------------------------LS~G~ 109 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----------------------------------LSGGN 109 (182)
T ss_pred CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----------------------------------cCHHH
Confidence 532 23567899999984 57888999999876421 99999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.++||++++|++|++
T Consensus 110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999877899999999975 67889999999999974
No 277
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=333.40 Aligned_cols=196 Identities=28% Similarity=0.469 Sum_probs=177.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------HhhccceEEEccCCCCCCC
Q psy12625 48 DISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RMLRKESCYIMQDNLLQEL 121 (612)
Q Consensus 48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~~~~i~yv~Q~~~l~~~ 121 (612)
++++..+.-.++||-|+||||||||+|+|+|+.+| ++|.|.+||+.+.+. ...++++||||||..+||+
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP-----deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH 90 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP-----DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH 90 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc-----cccEEEECCEEeecccCCcccChhhheeeeEeeccccccc
Confidence 77888877579999999999999999999999997 689999999876442 2347899999999999999
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~ 201 (612)
+||+.||.|+.... .....+++.+.+|++|..++++..|||||||||+|+|||+++|++|+||||.+.||-
T Consensus 91 ~tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 91 YTVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred eEEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 99999999975321 234678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625 202 LNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 202 ~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 258 (612)
..+.+++-.|++|+++ +..|+.++|.+. ++.+++|+|++|++|++...|+.+++.+
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999984 889999999975 7999999999999999999999988754
No 278
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.2e-40 Score=319.54 Aligned_cols=171 Identities=32% Similarity=0.513 Sum_probs=152.5
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
++++|++++|.. +++.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~~--------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPG--------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-----TSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCC--------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC-----CCCeEEECCEEcc
Confidence 468999988721 235699999999999999999999999999999999999886 5899999998864
Q ss_pred c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
+ ...+++.++|++|++.+++ .||+||+ ||||||||++
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l----------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFS-GSIAENI----------------------------------------LSGGQRQRLG 106 (173)
T ss_pred cCCHHHHHhheEEECCCCcccc-CcHHHHC----------------------------------------cCHHHHHHHH
Confidence 3 2345678999999998887 4999886 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999878999999999985 44 68999999999974
No 279
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.9e-42 Score=312.68 Aligned_cols=196 Identities=26% Similarity=0.377 Sum_probs=177.4
Q ss_pred ccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc--hHhhccceEEEccCCC
Q psy12625 40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNL 117 (612)
Q Consensus 40 ~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~ 117 (612)
.++.++|+|+|+.+++||..+|.||||||||||+|+++.+++| ++|.+++.|+++.. .+.+|++++|+.|.+.
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp-----~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa 87 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-----TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC-----CCceEEEcCccccccChHHHHHHHHHHHcCcc
Confidence 3678899999999999999999999999999999999999986 68999999999864 4789999999999999
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCC
Q psy12625 118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196 (612)
Q Consensus 118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPt 196 (612)
+|+ -||++|+.|..+++.. +.++....+.++++++.+. .++.+.+||||||||++|+|.|..-|+||+|||||
T Consensus 88 Lfg-~tVeDNlifP~~~r~r-----r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 88 LFG-DTVEDNLIFPWQIRNR-----RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred ccc-cchhhccccchHHhcc-----CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 998 5999999998877642 1245667889999999875 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 197 TGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 197 sgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|+||+.+++.|-++|.++. .+..+++.+|||+. +..+.+|+++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 9999999999999999997 58899999999986 56789999999999875
No 280
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=7.9e-41 Score=322.98 Aligned_cols=177 Identities=32% Similarity=0.527 Sum_probs=157.1
Q ss_pred EEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc
Q psy12625 22 LFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD 101 (612)
Q Consensus 22 ~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~ 101 (612)
+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 1 ~~~~l~~~~----------~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-----~~G~v~~~g~~~~~ 65 (180)
T cd03214 1 EVENLSVGY----------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-----SSGEILLDGKDLAS 65 (180)
T ss_pred CeeEEEEEE----------CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEECCc
Confidence 468898887 345799999999999999999999999999999999999886 68999999998643
Q ss_pred --hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 102 --HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 102 --~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
...+++.++|++| +++.+|+.+..++.+.+||||||||++|
T Consensus 66 ~~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~l 108 (180)
T cd03214 66 LSPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPFNELSGGERQRVLL 108 (180)
T ss_pred CCHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHH
Confidence 2334556888887 6677888877888899999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
||+|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|++. .+.+++|++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999876 899999999986 567899999999999988654
No 281
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.4e-41 Score=340.54 Aligned_cols=216 Identities=21% Similarity=0.265 Sum_probs=177.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|++++|.. .++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+| .+|+|.++|++
T Consensus 18 ~~i~~~~l~~~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~i~g~~ 84 (257)
T cd03288 18 GEIKIHDLCVRYEN--------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-----FDGKIVIDGID 84 (257)
T ss_pred ceEEEEEEEEEeCC--------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC-----CCCeEEECCEE
Confidence 36999999998821 235799999999999999999999999999999999999876 68999999998
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHH-----HHHHHHHHHHc--CCccccCcccCCC
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-----ESKVDSIADSL--SISTCKNTLTKHL 169 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~~~~L 169 (612)
+.+ ...+++.++|++|++.+++ .|++||+.... ....... ...+++.++.+ |++...++.+.+|
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~L 157 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENF 157 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcC
Confidence 643 2356788999999998886 59999975321 1111111 11234555555 6766677778899
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.++++. ++.|||+++|++. .+. .||++++|++|+++.
T Consensus 158 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~~G~i~~ 234 (257)
T cd03288 158 SVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLSRGILVE 234 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 5899999999987 454 499999999999999
Q ss_pred ecCccChh
Q psy12625 250 QGTVPGLV 257 (612)
Q Consensus 250 ~G~~~~~~ 257 (612)
.|+++++.
T Consensus 235 ~g~~~~~~ 242 (257)
T cd03288 235 CDTPENLL 242 (257)
T ss_pred eCCHHHHH
Confidence 99887654
No 282
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.7e-40 Score=320.05 Aligned_cols=177 Identities=30% Similarity=0.498 Sum_probs=155.8
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.|.. .++.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~~~~~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE--------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-----QQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC--------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----CCCEEEECCEEHH
Confidence 468999998721 224699999999999999999999999999999999999886 5899999998764
Q ss_pred ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.. ..+++.++|++|++.+++ .|++||+ +.+||||||||++|
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i-------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL-------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh-------------------------------------cccCCHHHHHHHHH
Confidence 32 345678999999998876 6998886 67899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||++.+|++++|||||+|||+.++..+++.|++++ ++.|||+++|++. .+ ..+|++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999986 5899999999986 45 579999999999998764
No 283
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=368.18 Aligned_cols=206 Identities=24% Similarity=0.367 Sum_probs=178.8
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch---HhhccceEEEccCC---CC
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH---RMLRKESCYIMQDN---LL 118 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~---~~~~~~i~yv~Q~~---~l 118 (612)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++... ...++.+|||+|++ .+
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 341 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-----TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGL 341 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCC
Confidence 69999999999999999999999999999999999886 589999999886432 23466899999996 57
Q ss_pred CCCCCHHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeC
Q psy12625 119 QELLTVEESLTVAAHLKLG---NQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194 (612)
Q Consensus 119 ~~~lTv~e~l~~~~~l~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDE 194 (612)
++.+||.||+.+....... .....++.+++++++++.+|+. +..++++++|||||||||+||++|+.+|++|||||
T Consensus 342 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDE 421 (501)
T PRK10762 342 VLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDE 421 (501)
T ss_pred cCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 8889999999875321110 0122334456789999999995 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 195 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
||+|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..|+++++
T Consensus 422 Pt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 422 PTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999888999999999986 68899999999999999999988776
No 284
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-40 Score=355.61 Aligned_cols=212 Identities=22% Similarity=0.268 Sum_probs=179.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+++++||++.+.. ...+.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~-------~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P-----~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKD-------GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-----NKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCC-------CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----CceEEEECCEee
Confidence 4667777666521 1125699999999999999999999999999999999999886 689999999751
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
++.+.+.+.+.+|++||+.+..... ..+..+..++++++++.+|+.+..++++++||||||||++|
T Consensus 89 -----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaL 154 (549)
T PRK13545 89 -----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGF 154 (549)
T ss_pred -----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHH
Confidence 1222345567789999998754332 22344455678899999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 258 (612)
||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. .+.++||++++|++|++++.|+++++..
T Consensus 155 ArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 155 AISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999888999999999976 6788999999999999999999887654
No 285
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.5e-41 Score=387.70 Aligned_cols=213 Identities=26% Similarity=0.389 Sum_probs=176.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|+. ..++++|+|+|++++|||.++|+||||||||||+|+|+|+++| .+|+|.+||++
T Consensus 477 ~~I~~~nVsf~Y~~-------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPN-------RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-----TGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCC-------CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-----CCCEEEECCEE
Confidence 36999999999842 1246799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT--- 166 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~--- 166 (612)
+.+ ...++++++||+|++.+|+ .|++||+.++.. ..+ ++++.++++..|+.+. .|+.+
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 754 3567899999999999987 799999987521 122 3345556666665432 23333
Q ss_pred -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.+||||||||++|||||+++|+|++||||||+||+.+...+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G 689 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKG 689 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999988 22 236899999999985 36789999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
++++.|+.+++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999887654
No 286
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3e-40 Score=347.50 Aligned_cols=218 Identities=24% Similarity=0.367 Sum_probs=199.0
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++++|+++.| +...+++|||+++++||+.||+|.||||||||+++|.|.++| ++|+|.++|++
T Consensus 3 ~~l~~~~itK~f----------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P-----~~GeI~v~G~~ 67 (501)
T COG3845 3 PALEMRGITKRF----------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP-----DSGEIRVDGKE 67 (501)
T ss_pred ceEEEeccEEEc----------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC-----CcceEEECCEE
Confidence 358899999988 567899999999999999999999999999999999999997 68999999998
Q ss_pred cc--ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 99 LQ--DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 99 ~~--~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
+. ++ +..+..||+|+|++.+++++||.||+.++..-......+.+..+++++++.++.||+-..|.++.+||-||||
T Consensus 68 v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQ 147 (501)
T COG3845 68 VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQ 147 (501)
T ss_pred eccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhH
Confidence 63 22 5678899999999999999999999998764322224566778899999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
||.|-++|..+|++|||||||+-|-|....++++.|++++++|+|||++||-.. ++.++|||+.+|++|+++..-+
T Consensus 148 RVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 148 RVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999999999999986 7999999999999999987766
No 287
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=368.56 Aligned_cols=208 Identities=20% Similarity=0.325 Sum_probs=179.2
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch---HhhccceEEEccCC---C
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH---RMLRKESCYIMQDN---L 117 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~---~~~~~~i~yv~Q~~---~ 117 (612)
.+++|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++... ...++.++|++|++ .
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 341 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR-----TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEG 341 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-----CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCC
Confidence 489999999999999999999999999999999999886 689999999886421 23467899999996 4
Q ss_pred CCCCCCHHHHHHHHHHhcc-CCC--CCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEe
Q psy12625 118 LQELLTVEESLTVAAHLKL-GNQ--YSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193 (612)
Q Consensus 118 l~~~lTv~e~l~~~~~l~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlD 193 (612)
+++.+|+.||+.+...... ... ......++.++++++.+|+. +..++++++|||||||||+||++|+.+|++||||
T Consensus 342 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLD 421 (501)
T PRK11288 342 IIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLD 421 (501)
T ss_pred CcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEc
Confidence 8889999999987532110 001 12233346788999999994 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 194 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|||+|||+.++.+++++|++++++|.|||++|||+. ++.++||++++|++|++++.|++++..
T Consensus 422 EPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 422 EPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred CCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999988999999999986 688999999999999999999887643
No 288
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=313.44 Aligned_cols=233 Identities=24% Similarity=0.322 Sum_probs=204.5
Q ss_pred eeEEEEeEEEEEEeeccccccccc-cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKS-KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
.+|+++||++++ ++ +.||++||++|++||+.+||||||||||||.++|+|.-. ...++|+|.++|+
T Consensus 2 ~~L~I~dLhv~v----------~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---Y~Vt~G~I~~~Ge 68 (251)
T COG0396 2 MMLEIKDLHVEV----------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---YEVTEGEILFDGE 68 (251)
T ss_pred ceeEEeeeEEEe----------cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---ceEecceEEECCc
Confidence 468999999998 44 599999999999999999999999999999999999754 2468999999999
Q ss_pred eccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccC-CCChh
Q psy12625 98 RLQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTK-HLSGG 172 (612)
Q Consensus 98 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~-~LSgG 172 (612)
++.+. ...|..+..-+|.|.-+|..|+.+.|..+.+.+....-...+..+.+++.++.+++++ .+++.+. ++|||
T Consensus 69 dI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGG 148 (251)
T COG0396 69 DILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGG 148 (251)
T ss_pred ccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcc
Confidence 98653 4467789999999999999999999998876543221112456778899999999987 6788776 69999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc--cceeeecCCeEEEe
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA--DYLYVLTEGYCTYQ 250 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~--D~v~~L~~G~iv~~ 250 (612)
||||..|+..++.+|++.+||||-||||..+-+.+.+.++++++.|.+++++||.. .+.++. |+|.+|.+|+|+..
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999985 567777 99999999999999
Q ss_pred cCccChhhHHhhcCCCC
Q psy12625 251 GTVPGLVPYLSDFGYQC 267 (612)
Q Consensus 251 G~~~~~~~~f~~~g~~~ 267 (612)
|.+ ++..+++..||.|
T Consensus 227 G~~-el~~~le~~gy~~ 242 (251)
T COG0396 227 GDP-ELAEELEEKGYDW 242 (251)
T ss_pred CCH-HHHHHHHHhchHH
Confidence 999 8889999988855
No 289
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.9e-40 Score=329.89 Aligned_cols=197 Identities=26% Similarity=0.364 Sum_probs=168.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC--CCCHHHHH
Q psy12625 51 GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE--LLTVEESL 128 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~--~lTv~e~l 128 (612)
+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++. ..++.++|++|++.+++ .+|++||+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~---~~~~~i~~v~q~~~~~~~~~~tv~~~l 72 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP-----AKGTVKVAGASPG---KGWRHIGYVPQRHEFAWDFPISVAHTV 72 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCccch---HhhCcEEEecccccccCCCCccHHHHH
Confidence 46899999999999999999999999999886 6899999998752 24578999999987643 47999999
Q ss_pred HHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy12625 129 TVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207 (612)
Q Consensus 129 ~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i 207 (612)
.+........ .......+++++++++.+|+++..++++++||||||||++|||+|+.+|+++++||||+|||+.++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 73 MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred HhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 8753211000 011223445688999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 208 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
.+.|++++++|+|+|+++|++. ++.+.||+++++ +|++++.|++++..
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999878999999999976 578899999999 89999999887653
No 290
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-41 Score=357.47 Aligned_cols=213 Identities=28% Similarity=0.433 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++++||+++|+. ...++|+|+|+++++||.+||+|+||||||||+++|+|..+| .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~--------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~-----~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG--------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-----QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC--------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC-----CCCeeeECCcCh
Confidence 7999999999853 455799999999999999999999999999999999999886 689999999987
Q ss_pred cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc-------c----
Q psy12625 100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL-------T---- 166 (612)
Q Consensus 100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-------~---- 166 (612)
... +.+++.+++++|...+|. -|+++|+.++. + +. .++.+.++++++||++..... +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~----~-~A----sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G 472 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN----P-DA----SDEELWAALQQVGLEKLLESAPDGLNTWLGEGG 472 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC----C-CC----CHHHHHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence 543 457889999999998887 69999998752 1 12 245677888888887654333 2
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
..||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+-+ +|+|+|++||+... .+.||||++|++|+
T Consensus 473 ~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~--le~~drIivl~~Gk 549 (573)
T COG4987 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRG--LERMDRIIVLDNGK 549 (573)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEeccccc--HhhcCEEEEEECCe
Confidence 3599999999999999999999999999999999999999999998866 48999999999864 68999999999999
Q ss_pred EEEecCccChhh
Q psy12625 247 CTYQGTVPGLVP 258 (612)
Q Consensus 247 iv~~G~~~~~~~ 258 (612)
++++|..+++..
T Consensus 550 iie~G~~~~Ll~ 561 (573)
T COG4987 550 IIEEGTHAELLA 561 (573)
T ss_pred eeecCCHHhhhc
Confidence 999999988764
No 291
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.7e-40 Score=336.13 Aligned_cols=235 Identities=22% Similarity=0.317 Sum_probs=207.1
Q ss_pred CCceeEEEEeEEEEEEeeccccc-cccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625 16 RKHFNLLFQDISYSALYYDTHSY-SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94 (612)
Q Consensus 16 ~~~~~l~~~~ls~~~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~ 94 (612)
..+..++.+|+.+.|+....+-+ ......++++||+++++||.++|+|.||||||||=.+|.+++++ +|+|.+
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s------~G~I~F 345 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS------QGEIRF 345 (534)
T ss_pred CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc------CceEEE
Confidence 34678999999999976543322 23345799999999999999999999999999999999999884 599999
Q ss_pred CCEeccch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCccc
Q psy12625 95 NETRLQDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLT 166 (612)
Q Consensus 95 ~g~~~~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~ 166 (612)
+|+++... ..+|+++-.||||| .+-|.+||.|-+.-+.....+ ..++.++++++.+.|+++||+. ..++++
T Consensus 346 ~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYP 424 (534)
T COG4172 346 DGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYP 424 (534)
T ss_pred CCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCC
Confidence 99998532 34688999999998 588999999999888766543 5678899999999999999986 579999
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.+.|||||||++||||++.+|++++||||||+||...+.+++++|++|.+ .|.+-++++||.. -+..+||+|+||++|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999976 6999999999976 688999999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
+||++|+.+++.+
T Consensus 504 kiVE~G~~~~if~ 516 (534)
T COG4172 504 KIVEQGPTEAVFA 516 (534)
T ss_pred EEeeeCCHHHHhc
Confidence 9999999988743
No 292
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.3e-40 Score=347.09 Aligned_cols=188 Identities=26% Similarity=0.443 Sum_probs=168.0
Q ss_pred EECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCC
Q psy12625 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140 (612)
Q Consensus 61 I~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~ 140 (612)
|+||||||||||||+|+|+.+| .+|+|.++|+++.+....++.++|++|++.+++.+||+||+.++...+ ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p-----~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~ 72 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP-----DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KV 72 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC-----CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CC
Confidence 6899999999999999999986 689999999987543334678999999999999999999999876432 23
Q ss_pred CHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q psy12625 141 SRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGT 219 (612)
Q Consensus 141 ~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 219 (612)
++.+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|+
T Consensus 73 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ 152 (325)
T TIGR01187 73 PRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152 (325)
T ss_pred CHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 3444567789999999999999999999999999999999999999999999999999999999999999999986 489
Q ss_pred EEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 220 MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 220 tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|+|++|||+. ++.++||++++|++|+++..|+++++.
T Consensus 153 tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 153 TFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999976 678999999999999999999988764
No 293
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=5.9e-39 Score=366.51 Aligned_cols=221 Identities=26% Similarity=0.370 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++++|.. ..+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+||+++
T Consensus 4 ~l~~~nl~~~y~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPS------GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP-----TSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCC------CCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCEEc
Confidence 6899999999832 11235799999999999999999999999999999999999886 689999999986
Q ss_pred cch--Hh----hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625 100 QDH--RM----LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 100 ~~~--~~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 173 (612)
... +. .++.++|++|++.+++.+|+.||+.+..... .....+.++++.++++.+||.+..|+.+++|||||
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq 149 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQ 149 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHH
Confidence 532 22 2568999999999999999999998865322 22344556788999999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. . .+.||++++|++|++++.|++
T Consensus 150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~-~~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-V-AAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-H-HHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999999878999999999975 3 467999999999999999988
Q ss_pred cCh
Q psy12625 254 PGL 256 (612)
Q Consensus 254 ~~~ 256 (612)
++.
T Consensus 228 ~~~ 230 (648)
T PRK10535 228 QEK 230 (648)
T ss_pred ccc
Confidence 754
No 294
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.1e-40 Score=382.70 Aligned_cols=218 Identities=25% Similarity=0.411 Sum_probs=180.1
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|+. +++.+|+|+|+++++||.++|+|+||||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~--------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p-----~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP--------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP-----QHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC--------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEe
Confidence 46999999999832 346799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHH-----HHHHHHHHHc--CCccccCcccCCC
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE-----SKVDSIADSL--SISTCKNTLTKHL 169 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~L 169 (612)
+.+ ...+|+.++||+|++.+|+ .|++||+.++. + ..++++.. ..+++.++.+ |++...+....+|
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 754 3567899999999999887 69999997642 1 22222211 1123334443 4444444555679
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++ . ...||++++|++|++++
T Consensus 595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~ii~l~~G~i~~ 671 (694)
T TIGR01846 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-T-VRACDRIIVLEKGQIAE 671 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-H-HHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999999985 5799999999985 3 46799999999999999
Q ss_pred ecCccChhh
Q psy12625 250 QGTVPGLVP 258 (612)
Q Consensus 250 ~G~~~~~~~ 258 (612)
.|+.+++.+
T Consensus 672 ~g~~~~l~~ 680 (694)
T TIGR01846 672 SGRHEELLA 680 (694)
T ss_pred eCCHHHHHH
Confidence 999887643
No 295
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.9e-40 Score=374.87 Aligned_cols=212 Identities=27% Similarity=0.424 Sum_probs=177.5
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|++++|+ +++++|+|+|++++|||.++|+|+||||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~y~---------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p-----~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYD---------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP-----QSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeC---------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCCEEEECCEE
Confidence 3699999999983 235699999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCcc
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNTL 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~ 165 (612)
+.+ ...+++.++||+|++.+|+ .|++||+.++. + ..++ +++++.++..|+.+ .....
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~ 468 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DATD----EEMRAAAERAQAHDFIERKPDGYDTVVGER 468 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCC
Confidence 764 3567899999999999987 69999998742 1 1222 23444455555432 22233
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
..+||||||||++|||||+.+|++++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|++++|++|
T Consensus 469 g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G 545 (588)
T PRK13657 469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNG 545 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECC
Confidence 34699999999999999999999999999999999999999999999875 4799999999985 46889999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
+++..|+.++..
T Consensus 546 ~i~~~g~~~~l~ 557 (588)
T PRK13657 546 RVVESGSFDELV 557 (588)
T ss_pred EEEEeCCHHHHH
Confidence 999999887664
No 296
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.6e-40 Score=365.48 Aligned_cols=217 Identities=22% Similarity=0.324 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++|++. .+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 268 ~l~~~~l~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-----~~G~i~~~g~~i 327 (510)
T PRK15439 268 VLTVEDLTG---------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA-----RGGRIMLNGKEI 327 (510)
T ss_pred eEEEeCCCC---------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----CCcEEEECCEEC
Confidence 577777762 159999999999999999999999999999999999886 589999999986
Q ss_pred cch---HhhccceEEEccCC---CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChh
Q psy12625 100 QDH---RMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGG 172 (612)
Q Consensus 100 ~~~---~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgG 172 (612)
... ...++.++|++|++ .+++.+|+.||+........+........+++++++++.+||+ +..++++++||||
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 407 (510)
T PRK15439 328 NALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGG 407 (510)
T ss_pred CCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcH
Confidence 432 12356799999984 4788899999986431111110111223345788999999997 7889999999999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++||+. .+.++||++++|++|+++..|+
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999999888999999999986 6889999999999999999998
Q ss_pred ccChh
Q psy12625 253 VPGLV 257 (612)
Q Consensus 253 ~~~~~ 257 (612)
++++.
T Consensus 487 ~~~~~ 491 (510)
T PRK15439 487 GAAIN 491 (510)
T ss_pred cccCC
Confidence 87653
No 297
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.7e-40 Score=374.14 Aligned_cols=214 Identities=27% Similarity=0.401 Sum_probs=180.5
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|+. .++++|+|+|+++++||.++|+|+||||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 329 ~~i~~~~v~f~y~~--------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~-----~~G~I~i~g~~ 395 (571)
T TIGR02203 329 GDVEFRNVTFRYPG--------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP-----DSGQILLDGHD 395 (571)
T ss_pred CeEEEEEEEEEcCC--------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-----CCCeEEECCEe
Confidence 36999999999832 346799999999999999999999999999999999999986 68999999998
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT--- 166 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~--- 166 (612)
+.+ .+.+++.++||+|++.+|+ .|++||+.++. ++..+ +++++++++.+|+.+. .|+.+
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred HHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 753 3567889999999999887 59999998752 11122 3456666666666432 23333
Q ss_pred -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.+||||||||++|||+++++|++++||||||+||+.+++.+++.|++++ +++|+|++||+++ ..+.||+|++|++|
T Consensus 467 g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g 543 (571)
T TIGR02203 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDG 543 (571)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCC
Confidence 3599999999999999999999999999999999999999999999885 4689999999984 57889999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
+++..|+.++..
T Consensus 544 ~i~~~g~~~~l~ 555 (571)
T TIGR02203 544 RIVERGTHNELL 555 (571)
T ss_pred EEEeeCCHHHHH
Confidence 999999988764
No 298
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=6.4e-40 Score=371.19 Aligned_cols=216 Identities=24% Similarity=0.341 Sum_probs=178.6
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++++|++++|+ +++++|+|+|+++++||.++|+||||||||||+++|+|+.+| .+|+|.+||.+
T Consensus 333 ~~i~~~~v~~~y~---------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~ 398 (585)
T TIGR01192 333 GAVEFRHITFEFA---------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-----TVGQILIDGID 398 (585)
T ss_pred CeEEEEEEEEECC---------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC-----CCCEEEECCEE
Confidence 3699999999882 224689999999999999999999999999999999999986 68999999998
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHH-----HHHHHHHc--CCccccCcccCCC
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK-----VDSIADSL--SISTCKNTLTKHL 169 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~L 169 (612)
+.+ .+.+++.++||+|++.+++ .|++||+.++. + ..++++.++. .++.+..+ |++...++...+|
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~L 472 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCC
Confidence 754 3567889999999999886 69999998752 1 1223222221 22233332 5555556667789
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|||||||++|||||+.+|++++|||||||||+.++..+.+.|+++. +++|+|+++|+++ . ...||++++|++|+++.
T Consensus 473 SgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~-~~~~d~i~~l~~G~i~~ 549 (585)
T TIGR01192 473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-T-VRNADLVLFLDQGRLIE 549 (585)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-H-HHcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999885 5899999999985 3 46799999999999999
Q ss_pred ecCccChh
Q psy12625 250 QGTVPGLV 257 (612)
Q Consensus 250 ~G~~~~~~ 257 (612)
.|+.++..
T Consensus 550 ~g~~~~l~ 557 (585)
T TIGR01192 550 KGSFQELI 557 (585)
T ss_pred ECCHHHHH
Confidence 99887664
No 299
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.5e-40 Score=371.61 Aligned_cols=213 Identities=24% Similarity=0.321 Sum_probs=177.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|++++|+ .+++.+|+|+|+++++||.++|+||||||||||+++|+|+++| .+|+|.+||++
T Consensus 312 ~~I~~~~v~~~y~--------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~i~~~g~~ 378 (569)
T PRK10789 312 GELDVNIRQFTYP--------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-----SEGDIRFHDIP 378 (569)
T ss_pred CcEEEEEEEEECC--------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCCEEEECCEE
Confidence 3689999999873 2346799999999999999999999999999999999999986 68999999998
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-----------ccccCcc
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-----------STCKNTL 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~~ 165 (612)
+.+ ...+++.++||+|++.+|+ .|++||+.++. + ..++ +.+++.++..++ +...+..
T Consensus 379 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 448 (569)
T PRK10789 379 LTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR----P-DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGER 448 (569)
T ss_pred HhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCC
Confidence 754 3567889999999999987 59999997642 1 1222 233444444443 3333444
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
..+||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.+|++++|++|
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G 525 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHG 525 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCC
Confidence 55799999999999999999999999999999999999999999999985 5899999999985 35779999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
+++..|+.+++.
T Consensus 526 ~i~~~g~~~~l~ 537 (569)
T PRK10789 526 HIAQRGNHDQLA 537 (569)
T ss_pred EEEEecCHHHHH
Confidence 999999987664
No 300
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-39 Score=315.64 Aligned_cols=191 Identities=23% Similarity=0.339 Sum_probs=164.1
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|++++| +++.+++ +|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~----------~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNI----------EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-----SSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEE----------CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCcccC
Confidence 7889999987 3345555 9999999999999999999999999999999886 6899999998864
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
+.. ++.++|++|++.+++..||+||+.+..... . ..++++++++.+|+.+..++.+++||||||||++||
T Consensus 66 ~~~--~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la 135 (195)
T PRK13541 66 NIA--KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIA 135 (195)
T ss_pred hhh--hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHH
Confidence 322 356899999988888899999998754321 1 234678889999999889999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccce
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL 239 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v 239 (612)
|+++.+|++++|||||+|||+.++..+.+.|++.+++|+|+|+++|++.. ...+|-+
T Consensus 136 ~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~ 192 (195)
T PRK13541 136 RLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQIL 192 (195)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhhee
Confidence 99999999999999999999999999999998877788999999999863 3446654
No 301
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=7.1e-40 Score=371.09 Aligned_cols=214 Identities=24% Similarity=0.375 Sum_probs=178.3
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|+. ..++.+|+|+|++++|||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~-------~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p-----~~G~I~i~g~~ 403 (576)
T TIGR02204 336 GEIEFEQVNFAYPA-------RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP-----QSGRILLDGVD 403 (576)
T ss_pred ceEEEEEEEEECCC-------CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-----CCCEEEECCEE
Confidence 36999999999832 1226799999999999999999999999999999999999986 58999999998
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCcc
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNTL 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~ 165 (612)
+.+ ...+++.++|+||++.+|+ .|++||+.++. + ..+ ++++++.++..|+.+ ..++.
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~-~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~ 473 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR----P-DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGER 473 (576)
T ss_pred HHhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC----C-CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence 754 3567889999999999886 69999997742 1 122 234555566655532 22233
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
..+||||||||++||||++.+|++++||||||+||+.+++.+++.|+++. +++|+|++||+++ ..+.+|++++|++|
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g 550 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQG 550 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECC
Confidence 34699999999999999999999999999999999999999999999985 4799999999984 46789999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
+++..|+.++..
T Consensus 551 ~~~~~g~~~~l~ 562 (576)
T TIGR02204 551 RIVAQGTHAELI 562 (576)
T ss_pred EEEeeecHHHHH
Confidence 999999977653
No 302
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.5e-39 Score=306.51 Aligned_cols=159 Identities=28% Similarity=0.433 Sum_probs=144.4
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.| +++++++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~----------~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRF----------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-----DSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEE----------CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEECC
Confidence 4689999988 345799999999999999999999999999999999999886 6899999999865
Q ss_pred ch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 101 DH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 101 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
.. ...++.++|++| ||||||||+
T Consensus 66 ~~~~~~~~~~~i~~~~q------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 66 FASPRDARRAGIAMVYQ------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred cCCHHHHHhcCeEEEEe------------------------------------------------------cCHHHHHHH
Confidence 32 234668999998 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.||++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999878999999999975 5778999999999999875
No 303
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-39 Score=310.03 Aligned_cols=169 Identities=39% Similarity=0.598 Sum_probs=148.7
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.|.. .++.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~~--------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-----~~G~i~~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPG--------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-----TSGEILIDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCC--------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CCCEEEECCEEhh
Confidence 467899988721 123799999999999999999999999999999999999886 5899999998864
Q ss_pred c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
. ...+++.++|++|++.+++ .|++||+ ||||||||++
T Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l----------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 68 DLDLESLRKNIAYVPQDPFLFS-GTIRENI----------------------------------------LSGGQRQRIA 106 (171)
T ss_pred hcCHHHHHhhEEEEcCCchhcc-chHHHHh----------------------------------------hCHHHHHHHH
Confidence 3 2345678999999998776 5888886 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999964 699999999986 4555 99999999885
No 304
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-39 Score=321.20 Aligned_cols=193 Identities=27% Similarity=0.350 Sum_probs=156.1
Q ss_pred EEEEeEEEEEEeeccccccccc---cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 21 LLFQDISYSALYYDTHSYSIKS---KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
|+++||++++.. ++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|
T Consensus 1 l~~~~l~~~~~~--------~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-----~~G~i~~~g- 66 (204)
T cd03250 1 ISVEDASFTWDS--------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-----LSGSVSVPG- 66 (204)
T ss_pred CEEeEEEEecCC--------CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-----CCCeEEEcC-
Confidence 468999998721 11 4699999999999999999999999999999999999886 689999998
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHH-----HHHHHHHc--CCccccCcccCCCC
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK-----VDSIADSL--SISTCKNTLTKHLS 170 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LS 170 (612)
.++|++|++.+++ .|++||+.+... ...+...+. +.+.++.+ |++...++.+.+||
T Consensus 67 ----------~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS 129 (204)
T cd03250 67 ----------SIAYVSQEPWIQN-GTIRENILFGKP------FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLS 129 (204)
T ss_pred ----------EEEEEecCchhcc-CcHHHHhccCCC------cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCC
Confidence 4999999998885 799999987421 111111111 11222222 34455667788999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
||||||++|||+|+.+|++++|||||+|||+.++..+.+ ++++++++|+|||+++|++. .+.. +|++++|++|+
T Consensus 130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999999998 56777667899999999986 4555 99999999985
No 305
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.5e-39 Score=319.53 Aligned_cols=198 Identities=24% Similarity=0.367 Sum_probs=160.9
Q ss_pred EEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc
Q psy12625 22 LFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD 101 (612)
Q Consensus 22 ~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~ 101 (612)
.+.|+++.+. +++.+++|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++..
T Consensus 2 ~~~~~~~~~~---------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~ 67 (218)
T cd03290 2 QVTNGYFSWG---------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-----LEGKVHWSNKNESE 67 (218)
T ss_pred eeeeeEEecC---------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----CCCeEEECCccccc
Confidence 4567777762 235799999999999999999999999999999999999876 58999999987532
Q ss_pred h------HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCc
Q psy12625 102 H------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNT 164 (612)
Q Consensus 102 ~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~ 164 (612)
. ...++.++|++|++.++ ..|++||+.+... ... +..+++++.+++.+ ..++
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 136 (218)
T cd03290 68 PSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGE 136 (218)
T ss_pred ccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCccc
Confidence 1 12456799999999887 5799999976421 111 12334555555543 2356
Q ss_pred ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~--~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 242 (612)
.+.+||||||||++|||+|+.+|+++||||||+|||+.++..+++ +++.++++|.|+|+++|++. .+ ..+|++++|
T Consensus 137 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l 214 (218)
T cd03290 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAM 214 (218)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEe
Confidence 788999999999999999999999999999999999999999998 67777667899999999986 44 579999999
Q ss_pred cCCe
Q psy12625 243 TEGY 246 (612)
Q Consensus 243 ~~G~ 246 (612)
++|.
T Consensus 215 ~~G~ 218 (218)
T cd03290 215 KDGS 218 (218)
T ss_pred cCCC
Confidence 9884
No 306
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-39 Score=356.98 Aligned_cols=218 Identities=20% Similarity=0.327 Sum_probs=182.0
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.+ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++
T Consensus 249 ~~i~~~~l~~~~------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~ 311 (491)
T PRK10982 249 VILEVRNLTSLR------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK-----SAGTITLHGKK 311 (491)
T ss_pred cEEEEeCccccc------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC-----CccEEEECCEE
Confidence 368999998752 3589999999999999999999999999999999999986 68999999988
Q ss_pred ccch---HhhccceEEEccCC---CCCCCCCHHHHHHHHH--Hh-ccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCC
Q psy12625 99 LQDH---RMLRKESCYIMQDN---LLQELLTVEESLTVAA--HL-KLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKH 168 (612)
Q Consensus 99 ~~~~---~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~--~l-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~ 168 (612)
+... ...++.++|++|++ .+++.+|+.+|..+.. .. ......++...++.++++++.+++. +..++++++
T Consensus 312 i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 391 (491)
T PRK10982 312 INNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGS 391 (491)
T ss_pred CCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccccc
Confidence 6432 23466799999985 4688898888743321 01 1000012233456788999999995 567999999
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
|||||||||+||++++.+|+||||||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999986 678999999999999999
Q ss_pred EecCcc
Q psy12625 249 YQGTVP 254 (612)
Q Consensus 249 ~~G~~~ 254 (612)
..++.+
T Consensus 471 ~~~~~~ 476 (491)
T PRK10982 471 GIVDTK 476 (491)
T ss_pred EEEccc
Confidence 877664
No 307
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-39 Score=314.78 Aligned_cols=221 Identities=24% Similarity=0.334 Sum_probs=189.3
Q ss_pred CCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC
Q psy12625 16 RKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95 (612)
Q Consensus 16 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~ 95 (612)
.....|+++|+++.+ ++|+||+|+|++|++||-.+|+|||||||||||++++|..+| .+|.+.+.
T Consensus 27 ~~~~li~l~~v~v~r----------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p-----ssg~~~~~ 91 (257)
T COG1119 27 INEPLIELKNVSVRR----------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP-----SSGDVTLL 91 (257)
T ss_pred CCcceEEecceEEEE----------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC-----CCCceeee
Confidence 344579999999987 779999999999999999999999999999999999999886 48999999
Q ss_pred CEeccc--h-HhhccceEEEccC--CCCCCCCCHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCC
Q psy12625 96 ETRLQD--H-RMLRKESCYIMQD--NLLQELLTVEESLTVAAHL--KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH 168 (612)
Q Consensus 96 g~~~~~--~-~~~~~~i~yv~Q~--~~l~~~lTv~e~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~ 168 (612)
|+.... . .++|+.||+|.-. ..+.+..+|+|-+.-+..- ........++..+++..+++.+|+++.+|++.++
T Consensus 92 G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~ 171 (257)
T COG1119 92 GRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS 171 (257)
T ss_pred eeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhh
Confidence 988642 2 5689999999743 3445567888877543221 1111122355677899999999999999999999
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
||-||||||-|||||+.+|++||||||++|||..+++.+.+.|.+++.. +.++|++||+.. ++...+++++++++|+
T Consensus 172 LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~ 250 (257)
T COG1119 172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250 (257)
T ss_pred cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCc
Confidence 9999999999999999999999999999999999999999999999874 889999999976 7889999999999999
Q ss_pred EEEecC
Q psy12625 247 CTYQGT 252 (612)
Q Consensus 247 iv~~G~ 252 (612)
++++|.
T Consensus 251 v~~~g~ 256 (257)
T COG1119 251 VVAQGK 256 (257)
T ss_pred eeeccc
Confidence 999874
No 308
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.7e-39 Score=396.26 Aligned_cols=220 Identities=26% Similarity=0.375 Sum_probs=181.5
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCC-------------
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT------------- 85 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~------------- 85 (612)
..|+++||+|+|+. ..++++|+|+|+++++|+.+||+||||||||||+++|.|+++|..+
T Consensus 1164 g~I~f~nVsF~Y~~-------~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~ 1236 (1466)
T PTZ00265 1164 GKIEIMDVNFRYIS-------RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDM 1236 (1466)
T ss_pred ceEEEEEEEEECCC-------CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccc
Confidence 36999999999842 1235799999999999999999999999999999999999987200
Q ss_pred ------------------------------------CCceeEEEECCEeccc--hHhhccceEEEccCCCCCCCCCHHHH
Q psy12625 86 ------------------------------------ETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLTVEES 127 (612)
Q Consensus 86 ------------------------------------~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~ 127 (612)
.+.+|+|++||.++.+ .+.+|+.+|||+|++.+|+ .|++||
T Consensus 1237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreN 1315 (1466)
T PTZ00265 1237 TNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYEN 1315 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHH
Confidence 0258999999999864 3678999999999999996 899999
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-------cccCcccC----CCChhhhhHHHHHHHHhhCCCEEEEeCCC
Q psy12625 128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-------TCKNTLTK----HLSGGQKKRLSIALELLSNPSIIFLDEPT 196 (612)
Q Consensus 128 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~~~----~LSgGerqRv~ia~aL~~~p~illlDEPt 196 (612)
|.++.. ..++ +.++++++..++. +-.|+.++ +||||||||++|||||+++|+||+|||||
T Consensus 1316 I~~g~~-----~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaT 1386 (1466)
T PTZ00265 1316 IKFGKE-----DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEAT 1386 (1466)
T ss_pred HhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 998621 2222 3345555554443 23355554 59999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhcccceeeecC----CeEE-EecCccChh
Q psy12625 197 TGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTE----GYCT-YQGTVPGLV 257 (612)
Q Consensus 197 sgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~----G~iv-~~G~~~~~~ 257 (612)
|+||+.+.+.|.+.|+++. .+++|+|+++|+++ ..+.||+|++|++ |+++ +.|+.+++.
T Consensus 1387 SaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1387 SSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999986 36899999999985 3678999999999 8955 899988765
No 309
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9e-39 Score=355.13 Aligned_cols=217 Identities=21% Similarity=0.262 Sum_probs=177.3
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ ..+|+|.++|++
T Consensus 259 ~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~----~~~G~i~~~g~~ 324 (490)
T PRK10938 259 PRIVLNNGVVSY----------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ----GYSNDLTLFGRR 324 (490)
T ss_pred ceEEEeceEEEE----------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc----ccCCeEEEeccc
Confidence 469999999988 446699999999999999999999999999999999998652 147999999986
Q ss_pred ccc---hHhhccceEEEccCCCCCCC--CCHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCC
Q psy12625 99 LQD---HRMLRKESCYIMQDNLLQEL--LTVEESLTVAAHL--KLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLS 170 (612)
Q Consensus 99 ~~~---~~~~~~~i~yv~Q~~~l~~~--lTv~e~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LS 170 (612)
+.. ....++.++|++|++.++.. .|+++++.+.... ....... ...+++++++++.+||.+ ..++++++||
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 403 (490)
T PRK10938 325 RGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHSLS 403 (490)
T ss_pred CCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhhCC
Confidence 422 12346789999998765443 5777776543211 1101111 233567899999999997 8899999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHh-cccceeeecCCeEE
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMIICTLHQPSASLLN-MADYLYVLTEGYCT 248 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv 248 (612)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++++ .|||++|||+. .+.+ .+|++++|++|+++
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceE
Confidence 999999999999999999999999999999999999999999998765 57999999986 5666 58999999999987
Q ss_pred Eec
Q psy12625 249 YQG 251 (612)
Q Consensus 249 ~~G 251 (612)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 754
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=357.66 Aligned_cols=209 Identities=24% Similarity=0.347 Sum_probs=176.6
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|++++| +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|.
T Consensus 2 l~i~~ls~~~----------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQF----------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP-----SAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEe----------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEecCC---
Confidence 7899999987 456799999999999999999999999999999999999886 5899999873
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHH-hc-----------cCC-C----------------CCHHHHHHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAH-LK-----------LGN-Q----------------YSRKAKESKVDS 151 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-l~-----------~~~-~----------------~~~~~~~~~v~~ 151 (612)
..++|++|++.+++.+||+|++.++.. .. .+. . ....+.++++++
T Consensus 64 ------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (530)
T PRK15064 64 ------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGE 137 (530)
T ss_pred ------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 348999999999999999999986421 00 000 0 000123457889
Q ss_pred HHHHcCCcccc-CcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625 152 IADSLSISTCK-NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSA 230 (612)
Q Consensus 152 ~l~~lgL~~~~-~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 230 (612)
+++.+|+.+.. ++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++||+.
T Consensus 138 ~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~- 213 (530)
T PRK15064 138 LLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH- 213 (530)
T ss_pred HHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-
Confidence 99999998644 578899999999999999999999999999999999999999999999863 5899999999976
Q ss_pred HHHhcccceeeecCCeE-EEecCccChh
Q psy12625 231 SLLNMADYLYVLTEGYC-TYQGTVPGLV 257 (612)
Q Consensus 231 ~i~~~~D~v~~L~~G~i-v~~G~~~~~~ 257 (612)
.+.++||++++|++|++ ++.|++++..
T Consensus 214 ~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 214 FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 57889999999999999 4888877553
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.8e-38 Score=357.40 Aligned_cols=209 Identities=26% Similarity=0.380 Sum_probs=177.1
Q ss_pred eeEEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
.+|+++||++.| + ++++|+|+|++|++||+++|+||||||||||||+|+|+.+| .+|+|.+++.
T Consensus 5 ~~l~i~~l~~~y----------~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-----~~G~i~~~~~ 69 (556)
T PRK11819 5 YIYTMNRVSKVV----------PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-----FEGEARPAPG 69 (556)
T ss_pred EEEEEeeEEEEe----------CCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEecCC
Confidence 479999999988 3 57799999999999999999999999999999999999886 6899998752
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHH-hc------------cCCCCC--------------------HHH
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH-LK------------LGNQYS--------------------RKA 144 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-l~------------~~~~~~--------------------~~~ 144 (612)
..+|||+|++.+++.+||.||+.++.. .. ...... ..+
T Consensus 70 ---------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (556)
T PRK11819 70 ---------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD 140 (556)
T ss_pred ---------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccc
Confidence 359999999999999999999987531 10 000000 001
Q ss_pred HHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy12625 145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224 (612)
Q Consensus 145 ~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~ 224 (612)
.+++++++++.+|+.. .++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++
T Consensus 141 ~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviii 216 (556)
T PRK11819 141 LDSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAV 216 (556)
T ss_pred hHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEE
Confidence 2456888999999964 789999999999999999999999999999999999999999999999999873 499999
Q ss_pred ecCCchHHHhcccceeeecCCeEE-EecCccCh
Q psy12625 225 LHQPSASLLNMADYLYVLTEGYCT-YQGTVPGL 256 (612)
Q Consensus 225 ~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~ 256 (612)
|||+. .+.+.||++++|++|+++ +.|+.++.
T Consensus 217 sHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 217 THDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred eCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 99976 678899999999999986 77876643
No 312
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-38 Score=314.84 Aligned_cols=193 Identities=22% Similarity=0.320 Sum_probs=170.5
Q ss_pred eeEEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
..++++||++.|..... .... ...+++||||++++||+++|+|+||||||||-|+|.|+.+| ++|+|.++|+
T Consensus 3 ~ll~v~~l~k~f~~~~~--~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p-----t~G~i~f~g~ 75 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG--FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP-----TSGEILFEGK 75 (268)
T ss_pred ceEEEeccEEEEecccc--cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC-----CCceEEEcCc
Confidence 36899999999965321 1111 24799999999999999999999999999999999999987 6899999998
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhH
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKR 176 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqR 176 (612)
++.... +++.++++.++|+.+|+.. ..++++.+||||||||
T Consensus 76 ~i~~~~--------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 76 DITKLS--------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred chhhcc--------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 853321 2445678999999999976 6899999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
++|||||+.+|+++++|||||+||...+.+++++|+++.+ .|.|.++++||.+ .+..++||+.+|..|++++.|+.++
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHH
Confidence 9999999999999999999999999999999999999987 6999999999986 6889999999999999999999988
Q ss_pred hh
Q psy12625 256 LV 257 (612)
Q Consensus 256 ~~ 257 (612)
+.
T Consensus 197 ~~ 198 (268)
T COG4608 197 VF 198 (268)
T ss_pred Hh
Confidence 74
No 313
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.7e-38 Score=318.86 Aligned_cols=189 Identities=26% Similarity=0.287 Sum_probs=159.8
Q ss_pred ccccceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCC
Q psy12625 44 DILKDISGVFV-----SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLL 118 (612)
Q Consensus 44 ~iL~~vs~~i~-----~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l 118 (612)
..++|++++++ +||+++|+||||||||||+++|+|+.+| .+|+|.++|. .++|++|+...
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-----~~G~i~~~g~----------~i~~~~q~~~~ 72 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-----DEGDIEIELD----------TVSYKPQYIKA 72 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-----CCCeEEECCc----------eEEEecccccC
Confidence 36778888876 7999999999999999999999999886 5899999884 48999999887
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCC
Q psy12625 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198 (612)
Q Consensus 119 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsg 198 (612)
.+.+||+|++.+...... . ....++++++.+||.+..++.+++|||||||||+||++|+.+|++++|||||++
T Consensus 73 ~~~~tv~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 73 DYEGTVRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred CCCCCHHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 778999999876432110 1 123467889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE--EecCccC
Q psy12625 199 LDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT--YQGTVPG 255 (612)
Q Consensus 199 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~ 255 (612)
||+.++..+.+.|+++++ .|+|||+++||+. .+..+||++++|+++..+ ..+++.+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999999999999999986 5899999999975 677899999999764333 3344444
No 314
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=8.4e-39 Score=358.71 Aligned_cols=197 Identities=29% Similarity=0.458 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++|+. +++++|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+||.++
T Consensus 320 ~i~~~~v~f~y~~--------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPG--------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-----TEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCC--------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEeh
Confidence 6999999999832 335799999999999999999999999999999999999986 689999999987
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-------Ccc----c
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-------NTL----T 166 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----~ 166 (612)
.+ .+.+|+.++||+|++.+|+ .|++||+.++.. ..+ ++.+++.++..|+.+.. |+. .
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g 456 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARP-----DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGG 456 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCC-----CCC----HHHHHHHHHHcCcHHHHHhCcccccchhcccc
Confidence 54 3568899999999999997 699999987521 122 23455666666654322 333 3
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 242 (612)
.+||||||||++|||||+++|++++||||||+||+.+.+.+.+.++++. +++|+|+++|+++ ..+.||+|++|
T Consensus 457 ~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4699999999999999999999999999999999999999999999885 5799999999985 35789999876
No 315
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.1e-38 Score=322.88 Aligned_cols=201 Identities=23% Similarity=0.343 Sum_probs=163.4
Q ss_pred CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625 15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94 (612)
Q Consensus 15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~ 94 (612)
......|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.+
T Consensus 34 ~~~~~~l~i~nls~~------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-----~~G~I~i 96 (282)
T cd03291 34 SSDDNNLFFSNLCLV------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP-----SEGKIKH 96 (282)
T ss_pred CCCCCeEEEEEEEEe------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEE
Confidence 444567999999873 24599999999999999999999999999999999999886 5899999
Q ss_pred CCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccC
Q psy12625 95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKN 163 (612)
Q Consensus 95 ~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~ 163 (612)
+| .++|++|++.+++ .||+||+.+.... .. .++.+.++.+++.+ ..+
T Consensus 97 ~g-----------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~ 154 (282)
T cd03291 97 SG-----------RISFSSQFSWIMP-GTIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG 154 (282)
T ss_pred CC-----------EEEEEeCcccccc-cCHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec
Confidence 87 2899999998887 4999999764211 11 11223333334332 233
Q ss_pred cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL-RDMAHQGTMIICTLHQPSASLLNMADYLYVL 242 (612)
Q Consensus 164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 242 (612)
+.+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.+ ++++ ++.|||+++|++. .+ ..||++++|
T Consensus 155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l 231 (282)
T cd03291 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILIL 231 (282)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEE
Confidence 456789999999999999999999999999999999999999999865 5554 5789999999986 34 689999999
Q ss_pred cCCeEEEecCccChh
Q psy12625 243 TEGYCTYQGTVPGLV 257 (612)
Q Consensus 243 ~~G~iv~~G~~~~~~ 257 (612)
++|++++.|+++++.
T Consensus 232 ~~G~i~~~g~~~~~~ 246 (282)
T cd03291 232 HEGSSYFYGTFSELQ 246 (282)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999887654
No 316
>KOG0055|consensus
Probab=100.00 E-value=5.6e-39 Score=369.26 Aligned_cols=219 Identities=27% Similarity=0.421 Sum_probs=185.8
Q ss_pred CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
....|+++||+|.|+. ..+.+||+|+|+++++|+.+||+|||||||||...+|-.+++| ++|.|.+||
T Consensus 984 ~~G~I~~~~V~F~YPs-------RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp-----~~G~V~IDg 1051 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPT-------RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP-----DAGKVKIDG 1051 (1228)
T ss_pred ceeEEEEeeeEeeCCC-------CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC-----CCCeEEECC
Confidence 3457999999999965 2567899999999999999999999999999999999999986 689999999
Q ss_pred Eeccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHcCCccccCcccC--
Q psy12625 97 TRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSLSISTCKNTLTK-- 167 (612)
Q Consensus 97 ~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~~~-- 167 (612)
+++++. +.+|+++|.|.|+|.||. -|++||+.|+. . +.+.++..+ .+.+.+. +|.+-.||+++
T Consensus 1052 ~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-~----~vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGer 1123 (1228)
T KOG0055|consen 1052 VDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-E----EVSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGER 1123 (1228)
T ss_pred cccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-C----CCCHHHHHHHHHHhhhHHHHh--cCcCcccCccCcc
Confidence 998753 678999999999999997 79999999981 1 133333222 1222222 34555566665
Q ss_pred --CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 168 --HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 168 --~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
+||||||||++||||+++||+||||||.||+||+++.+.+-+.|.+.. .|+|.|++.|.++. .+-||.|.|+++|
T Consensus 1124 G~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1124 GVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNG 1200 (1228)
T ss_pred cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999865 68999999999863 6889999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
+++++|+.+++..
T Consensus 1201 ~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1201 KVVEQGTHDELLA 1213 (1228)
T ss_pred EEEecccHHHHHh
Confidence 9999999988765
No 317
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.8e-38 Score=300.26 Aligned_cols=163 Identities=33% Similarity=0.496 Sum_probs=144.3
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++|+++.|+ +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.
T Consensus 1 i~~~~~~~~~~---------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATP---------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-----GSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcC---------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCC---
Confidence 46889998872 135699999999999999999999999999999999999886 5899999873
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
+.++|++|++.++ ..|++||+.+. .+.+||||||||++||
T Consensus 64 ------~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~~~~LS~G~~~rv~la 103 (166)
T cd03223 64 ------EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------WDDVLSGGEQQRLAFA 103 (166)
T ss_pred ------ceEEEECCCCccc-cccHHHHhhcc---------------------------------CCCCCCHHHHHHHHHH
Confidence 5699999998765 57999998642 3578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
|+|+.+|++++|||||+|||+.++..+.+.|+++ +.|+|++||++. ....||++++|++|
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 9999999999999999999999999999999886 589999999975 35799999999875
No 318
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=297.95 Aligned_cols=222 Identities=28% Similarity=0.419 Sum_probs=195.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC-E
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-T 97 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g-~ 97 (612)
..|+++||++++ +...+|+|+||++.+||+-+|+|||||||||+|++|+|..+| .+|+++++| .
T Consensus 4 ~iL~~~~vsVsF----------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp-----~~G~v~f~g~~ 68 (249)
T COG4674 4 IILYLDGVSVSF----------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-----QEGEVLFDGDT 68 (249)
T ss_pred ceEEEeceEEEE----------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC-----CcceEEEcCch
Confidence 568999999998 677899999999999999999999999999999999999886 589999999 6
Q ss_pred eccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-----CCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625 98 RLQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-----QYSRKAKESKVDSIADSLSISTCKNTLTKHL 169 (612)
Q Consensus 98 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L 169 (612)
++... ...|..||--+|.|..|+.+||+|||.++.+...+- .....+.+.+++++|+..||.+.++...+.|
T Consensus 69 dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~L 148 (249)
T COG4674 69 DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALL 148 (249)
T ss_pred hhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhh
Confidence 66443 334678999999999999999999999875432110 0112345678999999999999999999999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|-||||++.|++-++.+|++|++|||++|+--....+..++|+.++. +.+|+++.||.. .+.+++|+|.+|++|.+..
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLA 226 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceee
Confidence 99999999999999999999999999999999999999999999985 579999999986 7899999999999999999
Q ss_pred ecCccChh
Q psy12625 250 QGTVPGLV 257 (612)
Q Consensus 250 ~G~~~~~~ 257 (612)
.|+.+++.
T Consensus 227 EGsld~v~ 234 (249)
T COG4674 227 EGSLDEVQ 234 (249)
T ss_pred cccHHHhh
Confidence 99988764
No 319
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-38 Score=353.71 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=174.9
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+
T Consensus 318 ~~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----~~G~i~~~~~- 381 (530)
T PRK15064 318 NALEVENLTKGF----------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP-----DSGTVKWSEN- 381 (530)
T ss_pred ceEEEEeeEEee----------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCc-
Confidence 369999999987 446799999999999999999999999999999999999886 5899999873
Q ss_pred ccchHhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhh
Q psy12625 99 LQDHRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKK 175 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq 175 (612)
+.+||++|++. +++.+||+|++.+.. .. ...+++++++++.+|+. +..++++++|||||||
T Consensus 382 --------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 445 (530)
T PRK15064 382 --------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKG 445 (530)
T ss_pred --------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCcccccCHHHHH
Confidence 35999999864 556799999986421 10 11245688999999994 6789999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE-EecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT-YQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~ 254 (612)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++|||+. .+.++||++++|++|+++ +.|+++
T Consensus 446 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~ 521 (530)
T PRK15064 446 RMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYE 521 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHH
Confidence 999999999999999999999999999999999999886 359999999976 678899999999999998 778766
Q ss_pred Ch
Q psy12625 255 GL 256 (612)
Q Consensus 255 ~~ 256 (612)
+.
T Consensus 522 ~~ 523 (530)
T PRK15064 522 EY 523 (530)
T ss_pred HH
Confidence 44
No 320
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=311.93 Aligned_cols=232 Identities=23% Similarity=0.334 Sum_probs=197.4
Q ss_pred eEEEEeEEEEEEeecc-----------ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCc
Q psy12625 20 NLLFQDISYSALYYDT-----------HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN 88 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~-----------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~ 88 (612)
.+..+||++.|..... ++.++....+++|+||+|++|++++.+|||||||||+||+|+|++.| .
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-----~ 77 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-----T 77 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-----C
Confidence 4677888887754321 12222345689999999999999999999999999999999999987 6
Q ss_pred eeEEEECCEeccc-hHhhccceEEEc-cCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc
Q psy12625 89 SGYIEINETRLQD-HRMLRKESCYIM-QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT 166 (612)
Q Consensus 89 ~G~I~~~g~~~~~-~~~~~~~i~yv~-Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~ 166 (612)
+|.|.++|....+ .+.+-+.+++|+ |.-.+.-.+.+.|.+.....+. .++.++-+++.+.+.+.++|+...+.++
T Consensus 78 ~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v 154 (325)
T COG4586 78 SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV 154 (325)
T ss_pred CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh
Confidence 8999999987533 345667788775 4455655667888887765554 5677788899999999999999999999
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
+.||-|||.|+.||.+|+++|++|||||||=|||..++..+.+.|++..+ .+.||+.|||+.+ .+.++||||++|++|
T Consensus 155 r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~G 233 (325)
T COG4586 155 RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQG 233 (325)
T ss_pred hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCC
Confidence 99999999999999999999999999999999999999999999999986 7999999999987 689999999999999
Q ss_pred eEEEecCccChhhHH
Q psy12625 246 YCTYQGTVPGLVPYL 260 (612)
Q Consensus 246 ~iv~~G~~~~~~~~f 260 (612)
+++|+|+.+++.+.|
T Consensus 234 qlv~dg~l~~l~~~f 248 (325)
T COG4586 234 QLVFDGTLAQLQEQF 248 (325)
T ss_pred cEeecccHHHHHHHh
Confidence 999999998887654
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.9e-38 Score=353.68 Aligned_cols=210 Identities=26% Similarity=0.369 Sum_probs=175.2
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++++||+++|. +++++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.+++.
T Consensus 3 ~~i~~~nls~~~~---------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-----~~G~i~~~~~- 67 (552)
T TIGR03719 3 YIYTMNRVSKVVP---------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-----FNGEARPAPG- 67 (552)
T ss_pred EEEEEeeEEEecC---------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEecCC-
Confidence 3689999999881 146799999999999999999999999999999999999886 6899998751
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHh-c------------cCCCCCHH--------------------HH
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL-K------------LGNQYSRK--------------------AK 145 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l-~------------~~~~~~~~--------------------~~ 145 (612)
..+|||+|++.+++.+||+||+.++... + ......+. ..
T Consensus 68 --------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (552)
T TIGR03719 68 --------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDL 139 (552)
T ss_pred --------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchh
Confidence 3599999999999999999999875321 0 00000000 01
Q ss_pred HHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy12625 146 ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225 (612)
Q Consensus 146 ~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~ 225 (612)
+.+++++++.+|+.. .++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+++
T Consensus 140 ~~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiis 215 (552)
T TIGR03719 140 DRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVT 215 (552)
T ss_pred HHHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEe
Confidence 245677888899964 68899999999999999999999999999999999999999999999999876 35999999
Q ss_pred cCCchHHHhcccceeeecCCeEE-EecCccCh
Q psy12625 226 HQPSASLLNMADYLYVLTEGYCT-YQGTVPGL 256 (612)
Q Consensus 226 H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~ 256 (612)
||+. .+..+||++++|++|+++ +.|+.++.
T Consensus 216 Hd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 216 HDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred CCHH-HHHhhcCeEEEEECCEEEEecCCHHHH
Confidence 9976 678899999999999976 77877654
No 322
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3.3e-38 Score=312.76 Aligned_cols=195 Identities=20% Similarity=0.178 Sum_probs=163.0
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE-ECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE-INETRLQDHRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~-~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l 122 (612)
++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|. ++|..+ .+.+++.+++.+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-----~sG~i~~~~~~~~-----------~~~~~~~l~~~l 64 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-----DEGDFIGLRGDAL-----------PLGANSFILPGL 64 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-----CCCCEEEecCcee-----------ccccccccCCcC
Confidence 379999999999999999999999999999999999886 589997 777542 123456788899
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 202 (612)
|++||+.+..... ....++ ..+.+.+.++|+...++++++||||||||++||++|+.+|++++|||||++||+.
T Consensus 65 tv~enl~~~~~~~---~~~~~~---~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 65 TGEENARMMASLY---GLDGDE---FSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred cHHHHHHHHHHHc---CCCHHH---HHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9999999866543 122222 2234456678888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhhHHhh
Q psy12625 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSD 262 (612)
Q Consensus 203 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 262 (612)
++..+.+.+.+..+ ++++|+++|++. .+.++||++++|++|++++.|+.++...+++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998865443 367999999986 57789999999999999999999988777654
No 323
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.6e-38 Score=390.67 Aligned_cols=212 Identities=20% Similarity=0.239 Sum_probs=179.7
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|.. +.+++|+|+|++|++||.+||+||||||||||+++|.|+++| .+|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~~--------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP--------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL-----EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC--------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-----CCceEEECCEE
Confidence 46999999999832 346799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCcc
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNTL 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~ 165 (612)
+.+ .+.+|++++|||||+.+|+ -|++|||.+.. ..++ +.+.++++..++.+ ..+..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 864 3678999999999999998 49999997531 2222 34555566555533 22333
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
..+||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. ..-||+|++|++|
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G 1445 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSG 1445 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECC
Confidence 34799999999999999999999999999999999999999999999874 57999999999863 4569999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
++++.|+++++.
T Consensus 1446 ~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1446 QVLEYDSPQELL 1457 (1495)
T ss_pred EEEEECCHHHHH
Confidence 999999999875
No 324
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.1e-38 Score=352.80 Aligned_cols=202 Identities=23% Similarity=0.279 Sum_probs=172.0
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|++++|+ +++++|+|+|+++++||.++|+||||||||||+++|+|+++| .+|+|.+||++
T Consensus 321 ~~i~~~~v~f~y~---------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~ 386 (547)
T PRK10522 321 QTLELRNVTFAYQ---------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-----QSGEILLDGKP 386 (547)
T ss_pred ceEEEEEEEEEeC---------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEE
Confidence 3699999999983 234699999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc-----cCCCCh
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL-----TKHLSG 171 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----~~~LSg 171 (612)
+.+ ...+++.++||+|++.+|+ .|++|| . . ...++.+++.++.+|+.+..+.. ..+|||
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSg 452 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSK 452 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCH
Confidence 764 3567889999999998887 467666 0 0 12345678889999987654322 247999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||||++||||++.+|++++||||||+||+.++..+.+.+.+..+ +++|+|+++|+++ ..+.||++++|++|+++..
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999987654 5899999999974 4678999999999999876
No 325
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.8e-38 Score=356.00 Aligned_cols=185 Identities=28% Similarity=0.428 Sum_probs=156.5
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+|+|+ +++++|+|+|+++++||.+||+||||||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~---------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYP---------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP-----LQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecC---------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEE
Confidence 4699999999983 224699999999999999999999999999999999999986 68999999998
Q ss_pred ccch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCcccC---
Q psy12625 99 LQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLTK--- 167 (612)
Q Consensus 99 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~~--- 167 (612)
+.+. +.+|+.++||+|++.+|+ -|++||+.++. + ..+ +++++++++..|+++. .|+.++
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR----P-DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCccccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 7543 557889999999999997 59999998752 1 122 3456667777666542 245443
Q ss_pred -CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625 168 -HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228 (612)
Q Consensus 168 -~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 228 (612)
+||||||||++|||||+.+|+|++||||||+||+.+...+.+.|+++. +++|+|+++|++
T Consensus 469 ~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 599999999999999999999999999999999999999999999864 578999999984
No 326
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9.4e-38 Score=319.29 Aligned_cols=230 Identities=26% Similarity=0.345 Sum_probs=198.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.+.. ..+...++++|||++++||.+||+|.||||||-..+.+.|+++......-+|+|.++|++
T Consensus 5 ~lL~v~nLsV~f~~------~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~d 78 (534)
T COG4172 5 PLLSIRNLSVAFHQ------EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGED 78 (534)
T ss_pred cceeeeccEEEEec------CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChh
Confidence 35899999999843 336678999999999999999999999999999999999998743333468999999998
Q ss_pred ccch--Hh---hc-cceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc---cCcccC
Q psy12625 99 LQDH--RM---LR-KESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC---KNTLTK 167 (612)
Q Consensus 99 ~~~~--~~---~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~~~ 167 (612)
+... +. .| .+|+++||+| .+.|..|+...+.-..++ ....++++.++++.++|+.+|+.+. .+.++.
T Consensus 79 ll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~--Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH 156 (534)
T COG4172 79 LLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL--HRGLSRAAARARALELLELVGIPEPEKRLDAYPH 156 (534)
T ss_pred hhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc
Confidence 7432 22 33 4799999998 577778888877665444 3456778889999999999999764 577899
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
+|||||||||.||+||+++|++||.||||++||...+.+|+++|++|.+ .|.+++++|||.. -+.+++|||++|.+|+
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGE 235 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccE
Confidence 9999999999999999999999999999999999999999999999976 6999999999986 6889999999999999
Q ss_pred EEEecCccChh
Q psy12625 247 CTYQGTVPGLV 257 (612)
Q Consensus 247 iv~~G~~~~~~ 257 (612)
+++.|+.+++.
T Consensus 236 ivE~~~t~~lF 246 (534)
T COG4172 236 IVETGTTETLF 246 (534)
T ss_pred EeecCcHHHHh
Confidence 99999988764
No 327
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-38 Score=389.21 Aligned_cols=213 Identities=22% Similarity=0.241 Sum_probs=180.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|.. +.+++|+|+|++|+|||.+||+|+||||||||+++|.|+++| .+|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~~--------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p-----~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP--------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL-----ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC--------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC-----CCceEEECCEe
Confidence 46999999999832 345799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT--- 166 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~--- 166 (612)
+.+ .+.+|+++++||||+.+|+. |++|||.+.. ..+ ++.+.++++..++.+. .|+.+
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 865 36789999999999999984 9999997531 122 2345555665555322 23333
Q ss_pred -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.+||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. ..-||||++|++|
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~G 1448 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDAG 1448 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEECC
Confidence 4799999999999999999999999999999999999999999999875 57999999999863 4569999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
++++.|+++++.+
T Consensus 1449 ~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1449 RVVEFDTPENLLS 1461 (1622)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998753
No 328
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.7e-37 Score=349.48 Aligned_cols=207 Identities=21% Similarity=0.240 Sum_probs=173.0
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|+.. +..++++|+|+|+++++||.++|+||||||||||+++|+|+.+| .+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~-----~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p-----~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAP-----EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP-----QEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCC-----CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEE
Confidence 469999999998320 00124699999999999999999999999999999999999986 68999999999
Q ss_pred ccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc------CCCC
Q psy12625 99 LQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT------KHLS 170 (612)
Q Consensus 99 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~------~~LS 170 (612)
+.+. ..+++.++||+|++.+|+ -|++||. . +...++++++.++.+++.+..+..+ .+||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~------~------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLFD-DLIGPDE------G------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhhh-hhhhccc------c------cchhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 7643 567889999999998886 4777773 1 1123456788999999987654433 4699
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR-DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~-~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
||||||++||||++.+|++++||||||+||+.++..+.+.+. .++.+|+|+|+++|+++ ..+.||+|++|++|+++.
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVK 550 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999998664 55567899999999975 467899999999999876
Q ss_pred e
Q psy12625 250 Q 250 (612)
Q Consensus 250 ~ 250 (612)
.
T Consensus 551 ~ 551 (555)
T TIGR01194 551 D 551 (555)
T ss_pred e
Confidence 4
No 329
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=7.3e-38 Score=328.85 Aligned_cols=225 Identities=27% Similarity=0.412 Sum_probs=190.4
Q ss_pred CCCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE
Q psy12625 14 SPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93 (612)
Q Consensus 14 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~ 93 (612)
++.+...|.++++++.- +..++++|+|+||++++||.++|+||||||||||.|+|.|..+| .+|.|.
T Consensus 328 LP~P~g~L~Ve~l~~~P--------Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-----~~G~VR 394 (580)
T COG4618 328 LPAPQGALSVERLTAAP--------PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP-----TSGSVR 394 (580)
T ss_pred CCCCCceeeEeeeeecC--------CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc-----CCCcEE
Confidence 46677889999999843 23568999999999999999999999999999999999999986 689999
Q ss_pred ECCEeccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHH-----HHHHHHHHHHHHcCCccccCccc
Q psy12625 94 INETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRK-----AKESKVDSIADSLSISTCKNTLT 166 (612)
Q Consensus 94 ~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~-----~~~~~v~~~l~~lgL~~~~~~~~ 166 (612)
+||-++.. .+.+-+.|||.||+-.+|+ -||.||+. |+.++.+.+ .+...+.+++- .+.+-.||.+
T Consensus 395 LDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~i 466 (580)
T COG4618 395 LDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA-----RFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRI 466 (580)
T ss_pred ecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH-----hccccCCHHHHHHHHHHcChHHHHH--hCcCCccCcc
Confidence 99988754 3567789999999999998 69999984 222222221 12233455543 3445567777
Q ss_pred C----CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625 167 K----HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242 (612)
Q Consensus 167 ~----~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 242 (612)
+ .||||||||+++||||-.||.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|
T Consensus 467 G~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl 544 (580)
T COG4618 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVL 544 (580)
T ss_pred CCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeee
Confidence 6 59999999999999999999999999999999999999999999999999999999999985 58899999999
Q ss_pred cCCeEEEecCccChhhHHh
Q psy12625 243 TEGYCTYQGTVPGLVPYLS 261 (612)
Q Consensus 243 ~~G~iv~~G~~~~~~~~f~ 261 (612)
++|++-.+|+.+|++..+.
T Consensus 545 ~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 545 QDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred cCChHHhcCCHHHHHHHhc
Confidence 9999999999999987654
No 330
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1e-37 Score=384.00 Aligned_cols=213 Identities=22% Similarity=0.221 Sum_probs=180.2
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|+. +.+++|+|+|++++|||.+||+|+||||||||+++|.|+++| .+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~--------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-----~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE--------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES-----AEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC--------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC-----CCCeEEECCEE
Confidence 47999999999832 335799999999999999999999999999999999999986 68999999999
Q ss_pred ccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625 99 LQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT--- 166 (612)
Q Consensus 99 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~--- 166 (612)
+.+. +.+|+++++||||+.+|+. |++|||.... ..++ +.+.++++..++.+. .|+.+
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 8653 6789999999999999985 9999996311 2232 335556666555432 34444
Q ss_pred -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.+||||||||++|||||+++|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. ..-+|||++|++|
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G 1495 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKG 1495 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999998864 57999999999863 5679999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
++++.|+++++.+
T Consensus 1496 ~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1496 EVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998764
No 331
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.6e-37 Score=345.75 Aligned_cols=201 Identities=24% Similarity=0.298 Sum_probs=174.8
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...++++|+++.| ++. .|+++|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++
T Consensus 338 ~~~l~~~~ls~~~----------~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p-----~~G~I~~~-- 399 (590)
T PRK13409 338 ETLVEYPDLTKKL----------GDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP-----DEGEVDPE-- 399 (590)
T ss_pred ceEEEEcceEEEE----------CCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEEe--
Confidence 3469999999887 233 48999999999999999999999999999999999986 58999885
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
..++|++|+..+.+.+||+|++.+.... .. ....++++++.+||.+..++++.+|||||||||
T Consensus 400 ---------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRv 462 (590)
T PRK13409 400 ---------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRV 462 (590)
T ss_pred ---------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHH
Confidence 1489999998888899999999875221 11 123568899999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++||+. .+..+||++++|+ |++...|...+
T Consensus 463 aiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~~~ 539 (590)
T PRK13409 463 AIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHASG 539 (590)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-CcceeeeecCC
Confidence 999999999999999999999999999999999999987 5899999999976 6788999999996 47777776443
No 332
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.1e-37 Score=346.37 Aligned_cols=203 Identities=23% Similarity=0.353 Sum_probs=171.5
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+++ +
T Consensus 323 ~~l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----~~G~i~~~~-~ 386 (556)
T PRK11819 323 KVIEAENLSKSF----------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP-----DSGTIKIGE-T 386 (556)
T ss_pred eEEEEEeEEEEE----------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECC-c
Confidence 469999999987 456799999999999999999999999999999999999886 689999854 2
Q ss_pred ccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhH
Q psy12625 99 LQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKR 176 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqR 176 (612)
..+||++|++ .+++.+||+||+.+..... .... .+..++++++.+|+.+ ..++++++||||||||
T Consensus 387 --------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr 453 (556)
T PRK11819 387 --------VKLAYVDQSRDALDPNKTVWEEISGGLDII---KVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNR 453 (556)
T ss_pred --------eEEEEEeCchhhcCCCCCHHHHHHhhcccc---cccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHH
Confidence 1499999996 6788899999998764321 1111 1223557899999974 5799999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC-CeEE-EecCcc
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYCT-YQGTVP 254 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~ 254 (612)
|+||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++|||+. .+.++||++++|++ |++. +.|+.+
T Consensus 454 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 454 LHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHH
Confidence 999999999999999999999999999999999999873 4 8999999976 67889999999986 7776 455443
No 333
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2e-37 Score=314.92 Aligned_cols=192 Identities=27% Similarity=0.385 Sum_probs=162.4
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE-----------ECCEeccch-Hh-hc--c
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE-----------INETRLQDH-RM-LR--K 107 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~-----------~~g~~~~~~-~~-~~--~ 107 (612)
+.+|+|+| .+++||+++|+||||||||||||+|+|+.+| .+|+|. ++|+++.+. .. .+ .
T Consensus 14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-----~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 87 (255)
T cd03236 14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP-----NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDV 87 (255)
T ss_pred chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC-----CCceEeeccccchhhhhccCchhhhhhHHhhhccc
Confidence 35999999 5999999999999999999999999999986 589996 788775432 11 11 2
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCC
Q psy12625 108 ESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNP 187 (612)
Q Consensus 108 ~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p 187 (612)
.++|++|+...++ .++.+++.... . ....++.+.++++.+|+++..++.+.+||||||||++||++|+.+|
T Consensus 88 ~i~~~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 88 KVIVKPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred ceeeecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 4789999888877 48888876532 1 1233467889999999999899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 188 ~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
+++++||||+|||+.++..+.+.|++++++++|||+++|++. .+.++||++++|+ |++.+.|
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999888899999999975 5777899999995 5565544
No 334
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.2e-37 Score=380.47 Aligned_cols=212 Identities=22% Similarity=0.253 Sum_probs=181.7
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|+. +.+.+|+|||++|++||.+||+|+||||||||+++|.|+++| .+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~--------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p-----~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE--------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV-----CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC--------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEE
Confidence 46999999999832 345699999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT--- 166 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~--- 166 (612)
+.+ .+.+|+.++||||++.+|+ -|++|||... ...+ ++.+.++++..|+.+. .|+.+
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 864 3678999999999999998 4999999531 1222 3457777777777543 34444
Q ss_pred -CCCChhhhhHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 167 -KHLSGGQKKRLSIALELLSN-PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 167 -~~LSgGerqRv~ia~aL~~~-p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
.+||||||||++|||||+.+ |+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH 1519 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 36999999999999999996 89999999999999999999999999864 4799999999985 3578999999999
Q ss_pred CeEEEecCccChh
Q psy12625 245 GYCTYQGTVPGLV 257 (612)
Q Consensus 245 G~iv~~G~~~~~~ 257 (612)
|++++.|+++++.
T Consensus 1520 G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1520 GAVAEMGSPRELV 1532 (1560)
T ss_pred CEEEEECCHHHHH
Confidence 9999999999875
No 335
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.5e-37 Score=377.22 Aligned_cols=211 Identities=25% Similarity=0.400 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE-CCEe
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-NETR 98 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~-~g~~ 98 (612)
.|+++||+++|+. ..++++|+|+|+++++||++||+||||||||||+++|+|+++| .+|+|.+ +|.+
T Consensus 382 ~I~~~nVsf~Y~~-------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDT-------RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP-----TEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCC-------CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC-----CCCeEEEeCCcc
Confidence 6999999999832 1235799999999999999999999999999999999999986 6899999 4677
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHh-cc--------CC-----------------------------
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHL-KL--------GN----------------------------- 138 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l-~~--------~~----------------------------- 138 (612)
+.+ ...+|+.+|||+|++.+|+ .|++||+.++... +. ..
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 643 3457889999999999997 5999999986310 00 00
Q ss_pred -CC---------CHHHHHHHHHHHHHHcCCccc-----------cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625 139 -QY---------SRKAKESKVDSIADSLSISTC-----------KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197 (612)
Q Consensus 139 -~~---------~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts 197 (612)
.. .....++.+.++++.+++.+. .+....+||||||||++|||||+.+|+|||||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 00 001123557777777776543 234456799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 198 GLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 198 gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
+||+.++..+.+.|+++++ +|+|+|+++|+++ . .+.||+|++|++|
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~-i~~aD~Iivl~~g 655 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-T-IRYANTIFVLSNR 655 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-H-HHhCCEEEEEeCC
Confidence 9999999999999999976 6899999999986 3 4789999999986
No 336
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.8e-37 Score=343.51 Aligned_cols=202 Identities=24% Similarity=0.364 Sum_probs=170.7
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.+++ +
T Consensus 321 ~~l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----~~G~i~~~~-~ 384 (552)
T TIGR03719 321 KVIEAENLSKGF----------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP-----DSGTIKIGE-T 384 (552)
T ss_pred eEEEEeeEEEEE----------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CCeEEEECC-c
Confidence 469999999987 456799999999999999999999999999999999999886 689999854 2
Q ss_pred ccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhH
Q psy12625 99 LQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKR 176 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqR 176 (612)
..+||++|++ .+++.+||.|++.+..... ..... +.+++++++.+|+.+ ..++++++||||||||
T Consensus 385 --------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qr 451 (552)
T TIGR03719 385 --------VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNR 451 (552)
T ss_pred --------eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHH
Confidence 1599999996 4788899999998764221 11111 224567899999974 5799999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC-CeEE-EecCc
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYCT-YQGTV 253 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~ 253 (612)
|+||++|+.+|++|||||||+|||+.++..+.+.|+++. + |||++|||+. .+.++||++++|++ |++. +.|+.
T Consensus 452 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 452 VHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCH
Confidence 999999999999999999999999999999999999873 3 8999999975 67889999999986 5766 44544
No 337
>KOG0056|consensus
Probab=100.00 E-value=5.1e-38 Score=326.27 Aligned_cols=232 Identities=28% Similarity=0.368 Sum_probs=187.7
Q ss_pred hhhhhhhccC---CCCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 4 EEAELQDLKK---SPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 4 ~~~~~~~~~~---~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
||.++.+.++ +..++..++++||++.|. .+|++|+||||++.||+.+|++||||+||||++|+|..+.
T Consensus 518 ee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~---------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff 588 (790)
T KOG0056|consen 518 EEPEVVDLPGAPPLKVTQGKIEFSNVTFAYD---------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF 588 (790)
T ss_pred cCchhhcCCCCCCccccCCeEEEEEeEEecC---------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh
Confidence 4445544443 356677899999999984 4688999999999999999999999999999999999987
Q ss_pred CCCCCCCceeEEEECCEeccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHH--HHH-HHH
Q psy12625 81 RPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV--DSI-ADS 155 (612)
Q Consensus 81 ~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v--~~~-l~~ 155 (612)
+- .+|.|.+||+++++. ..+|+.||.||||..+|+ -|+..|++++. . ..+.++..+.+ .++ =+.
T Consensus 589 dv-----~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak---~--~AsneevyaAAkAA~IHdrI 657 (790)
T KOG0056|consen 589 DV-----NSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK---P--SASNEEVYAAAKAAQIHDRI 657 (790)
T ss_pred hc-----cCceEEEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC---C--CCChHHHHHHHHHhhHHHHH
Confidence 63 689999999998653 678999999999999987 58888888752 1 12223222211 111 123
Q ss_pred cCCccccCcccCC----CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy12625 156 LSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231 (612)
Q Consensus 156 lgL~~~~~~~~~~----LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 231 (612)
+++.+-.++++|+ |||||||||+|||+++.+|.+++|||.||+||..+.+.|-..|.++++. +|-|++.|..+.
T Consensus 658 l~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~-RTtIVvAHRLST- 735 (790)
T KOG0056|consen 658 LQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCAN-RTTIVVAHRLST- 735 (790)
T ss_pred hcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-CceEEEeeeehh-
Confidence 4666667777774 9999999999999999999999999999999999999999999999874 566666798764
Q ss_pred HHhcccceeeecCCeEEEecCccChhh
Q psy12625 232 LLNMADYLYVLTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 232 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 258 (612)
.--+|.|+++++|+|++.|..+|+..
T Consensus 736 -ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 736 -IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred -eecccEEEEEeCCeEeecCcHHHHHh
Confidence 45689999999999999999888764
No 338
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.1e-36 Score=373.80 Aligned_cols=212 Identities=22% Similarity=0.278 Sum_probs=181.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|.. +.+.+|+|+|++|++||.+||+|+||||||||+++|.|+.+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~--------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE--------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC--------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEE
Confidence 47999999999832 45789999999999999999999999999999999999975 37999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCcccC--
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLTK-- 167 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~~-- 167 (612)
+.+ ...+|++++||||++.+|+ -|++|||.... ..+ ++.+.++++..+|.+. .|+.++
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 864 3678999999999999998 59999995421 122 3567778888777543 344443
Q ss_pred --CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 168 --HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 168 --~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
+||||||||++|||||+++|+||+||||||+||+.+...+.+.|++.. +++|||+++|.++ ....||+|++|++|
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGS 1427 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999864 4799999999985 35669999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
++++.|+++++.+
T Consensus 1428 ~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1428 SVKQYDSIQKLLN 1440 (1490)
T ss_pred EEEEeCCHHHHHc
Confidence 9999999988753
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=345.28 Aligned_cols=202 Identities=27% Similarity=0.387 Sum_probs=172.3
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.| +++.+|+|+|++|++||+++|+||||||||||||+|+|+.+| .+|+|.+++.
T Consensus 311 ~~l~~~~l~~~y----------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~- 374 (638)
T PRK10636 311 PLLKMEKVSAGY----------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP-----VSGEIGLAKG- 374 (638)
T ss_pred ceEEEEeeEEEe----------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCeEEECCC-
Confidence 469999999987 456799999999999999999999999999999999999886 6899998742
Q ss_pred ccchHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhh
Q psy12625 99 LQDHRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKK 175 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq 175 (612)
..+||++|+. .+.+..|+.+++.- .. ....++++.++++.+|+. +..+++++.|||||||
T Consensus 375 --------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekq 437 (638)
T PRK10636 375 --------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKA 437 (638)
T ss_pred --------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHH
Confidence 2589999974 34556677776531 11 112345688999999996 4689999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE-EecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT-YQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~ 254 (612)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+.+
T Consensus 438 Rl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 438 RLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLE 513 (638)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHH
Confidence 999999999999999999999999999999999999987 34 9999999975 678899999999999997 888877
Q ss_pred Chh
Q psy12625 255 GLV 257 (612)
Q Consensus 255 ~~~ 257 (612)
+..
T Consensus 514 ~~~ 516 (638)
T PRK10636 514 DYQ 516 (638)
T ss_pred HHH
Confidence 653
No 340
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=287.61 Aligned_cols=221 Identities=23% Similarity=0.308 Sum_probs=180.8
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
++++|+++.+.. -...++++|+++|+++.+|+++.|+|.||||||||+|+|+|.+.| ++|+|.++|.++.
T Consensus 2 i~~~~~~~~f~~-----g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-----t~G~I~Idg~dVt 71 (263)
T COG1101 2 ISLSNATKTFFK-----GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-----TSGQILIDGVDVT 71 (263)
T ss_pred cccccceeeecC-----CChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc-----CCceEEECceecc
Confidence 456677766522 123568899999999999999999999999999999999999886 6899999999986
Q ss_pred chHhh--ccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCH---HHHHHHHHHHHHHc--CCccccCcccCCCCh
Q psy12625 101 DHRML--RKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSR---KAKESKVDSIADSL--SISTCKNTLTKHLSG 171 (612)
Q Consensus 101 ~~~~~--~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~~~~LSg 171 (612)
..... ...++-|+||| -..+.+|++||+.++..-...+.++. ...++...+-++.+ ||++..+++++-|||
T Consensus 72 k~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSG 151 (263)
T COG1101 72 KKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSG 151 (263)
T ss_pred cCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccc
Confidence 54322 34688899997 46899999999998764311122222 12233344445554 678899999999999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||-++++.|-+..|+||+|||-|++|||.++..+++.-.++.+ .+.|.+++||+.. +..++.+|+++|++|+|+.+
T Consensus 152 GQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 152 GQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEE
Confidence 999999999999999999999999999999999999999999976 6789999999987 57899999999999999976
Q ss_pred cC
Q psy12625 251 GT 252 (612)
Q Consensus 251 G~ 252 (612)
-.
T Consensus 231 v~ 232 (263)
T COG1101 231 VT 232 (263)
T ss_pred cc
Confidence 43
No 341
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.1e-36 Score=279.67 Aligned_cols=230 Identities=24% Similarity=0.350 Sum_probs=196.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++++|+++++...... ++.....+++.|||++++|+.+||+|.||||||||.|+|+|.++| ++|+|.+||+++
T Consensus 4 LLeV~nLsKtF~~~~~l-f~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P-----TsG~il~n~~~L 77 (267)
T COG4167 4 LLEVRNLSKTFRYRTGL-FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----TSGEILINDHPL 77 (267)
T ss_pred hhhhhhhhhhhhhhhhh-hhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC-----CCceEEECCccc
Confidence 47789999887432111 122345689999999999999999999999999999999999987 689999999986
Q ss_pred cc--hHhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-ccccCcccCCCChhhh
Q psy12625 100 QD--HRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-STCKNTLTKHLSGGQK 174 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~~~LSgGer 174 (612)
.- .....+.|-+++||++ +.|.+.+.+-+....++. .++..+++.+++.+.++.+|| .+.++-++..||-|||
T Consensus 78 ~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QK 155 (267)
T COG4167 78 HFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQK 155 (267)
T ss_pred cccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhH
Confidence 42 2333478999999984 667777877777765544 356677888999999999997 4578889999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
|||++||||+.+|+|++.||...+||...+.++++++-+|.+ .|.+-|.++.+.. .+.+++|+|+||++|++++.|++
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCCh
Confidence 999999999999999999999999999999999999999986 6999999998875 68999999999999999999999
Q ss_pred cChhh
Q psy12625 254 PGLVP 258 (612)
Q Consensus 254 ~~~~~ 258 (612)
.++..
T Consensus 235 ~~v~a 239 (267)
T COG4167 235 ADVLA 239 (267)
T ss_pred hhhhc
Confidence 87743
No 342
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=272.63 Aligned_cols=194 Identities=23% Similarity=0.332 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
++.++||+... ++...|.|+|++|.+||++-|||||||||||||..+.|.+.+. -..+|++.+|++++
T Consensus 2 ~l~l~nvsl~l----------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~--F~~~G~~~l~~~~l 69 (213)
T COG4136 2 MLCLKNVSLRL----------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ--FSCTGELWLNEQRL 69 (213)
T ss_pred ceeeeeeeecC----------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccC--cceeeEEEECCeec
Confidence 46788988654 5677999999999999999999999999999999999988763 24799999999997
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.....-+|++|..+||+.+||.++|.+|+.|+. |...+-..+++.++..+++.||+...++.+.+||||||-||++
T Consensus 70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred cccchhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHH
Confidence 655667899999999999999999999998863 3344445667788999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCc
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMIICTLHQPS 229 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~ 229 (612)
-|+|+..|+.++||||+|.||..-+.++.+..-.- ...|..+|.+|||..
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999999999999999999999999987654 447999999999965
No 343
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-35 Score=289.56 Aligned_cols=225 Identities=21% Similarity=0.293 Sum_probs=196.2
Q ss_pred eeEEEEeEEEEEEeeccc-------------c-ccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCC
Q psy12625 19 FNLLFQDISYSALYYDTH-------------S-YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~-------------~-~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~ 84 (612)
+.|+++||++.++.+... . .......+|+||||++++||.++|+|+||||||||||+|+|.++|
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P-- 79 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP-- 79 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC--
Confidence 368899999998766410 1 123456799999999999999999999999999999999999997
Q ss_pred CCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc
Q psy12625 85 TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164 (612)
Q Consensus 85 ~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 164 (612)
++|+|.++|+- ... +--..| +.|.+|.+||+.+-..+. .+++++.+++++++++.-+|.+..|+
T Consensus 80 ---t~G~v~v~G~v-~~l--i~lg~G-------f~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~ 143 (249)
T COG1134 80 ---TSGKVKVTGKV-APL--IELGAG-------FDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQ 143 (249)
T ss_pred ---CCceEEEcceE-ehh--hhcccC-------CCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 68999999975 211 111223 346699999999876553 46788899999999999999999999
Q ss_pred ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+++++|.|++-|++.|.|...+|+||++||-.+--|+.-+++..+.++++.++++|||+++||+. .+.++||++++|++
T Consensus 144 PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~ 222 (249)
T COG1134 144 PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH 222 (249)
T ss_pred chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999888899999999986 69999999999999
Q ss_pred CeEEEecCccChhhHHhh
Q psy12625 245 GYCTYQGTVPGLVPYLSD 262 (612)
Q Consensus 245 G~iv~~G~~~~~~~~f~~ 262 (612)
|++...|+++++.++++.
T Consensus 223 G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred CEEEEcCCHHHHHHHHHH
Confidence 999999999999987654
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=6.1e-36 Score=278.34 Aligned_cols=144 Identities=33% Similarity=0.477 Sum_probs=131.7
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
++++|+++.+ +++.+++++|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+
T Consensus 1 l~~~~l~~~~----------~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----~~G~i~~~~~--- 62 (144)
T cd03221 1 IELENLSKTY----------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP-----DEGIVTWGST--- 62 (144)
T ss_pred CEEEEEEEEE----------CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CceEEEECCe---
Confidence 4678999887 335699999999999999999999999999999999999886 6899999984
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
+.++|++| ||+|||||++||
T Consensus 63 ------~~i~~~~~------------------------------------------------------lS~G~~~rv~la 82 (144)
T cd03221 63 ------VKIGYFEQ------------------------------------------------------LSGGEKMRLALA 82 (144)
T ss_pred ------EEEEEEcc------------------------------------------------------CCHHHHHHHHHH
Confidence 36899998 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
|+|+.+|+++++||||+|||+.++..+.+.++++ ++|+++++|++. ++.+.+|++++|++|+
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999987 469999999976 6778899999999985
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7.5e-36 Score=340.69 Aligned_cols=204 Identities=25% Similarity=0.362 Sum_probs=171.8
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||++.| +++++|+|+|++|++|++++|+||||||||||||+|+|+.+| .+|+|.+ |.
T Consensus 317 ~~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----~~G~i~~-~~ 380 (635)
T PRK11147 317 KIVFEMENVNYQI----------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-----DSGRIHC-GT 380 (635)
T ss_pred CceEEEeeeEEEE----------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCcEEEE-CC
Confidence 3469999999987 456799999999999999999999999999999999999886 6899998 43
Q ss_pred eccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhh
Q psy12625 98 RLQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKK 175 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq 175 (612)
++ .+||++|+. .+++.+||.|++.+.... . ... .....+.++++.+++. +..++++++|||||||
T Consensus 381 ~~--------~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq 447 (635)
T PRK11147 381 KL--------EVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERN 447 (635)
T ss_pred Cc--------EEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHH
Confidence 31 499999985 588899999999875321 1 111 1234678899999996 5689999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec-CCeEEE-ecCc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT-EGYCTY-QGTV 253 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~-~G~~ 253 (612)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+..+||++++|+ +|++.. .|+.
T Consensus 448 Rl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y 523 (635)
T PRK11147 448 RLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGY 523 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCH
Confidence 999999999999999999999999999999999999876 459999999975 6788999999997 798764 4443
Q ss_pred c
Q psy12625 254 P 254 (612)
Q Consensus 254 ~ 254 (612)
+
T Consensus 524 ~ 524 (635)
T PRK11147 524 H 524 (635)
T ss_pred H
Confidence 3
No 346
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.2e-36 Score=286.34 Aligned_cols=156 Identities=29% Similarity=0.374 Sum_probs=136.9
Q ss_pred EeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchH
Q psy12625 24 QDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR 103 (612)
Q Consensus 24 ~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~ 103 (612)
.||+++| +++.+++++ +++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+
T Consensus 4 ~~l~~~~----------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~----- 62 (177)
T cd03222 4 PDCVKRY----------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-----NGDNDEWDGIT----- 62 (177)
T ss_pred CCeEEEE----------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCcEEEECCEE-----
Confidence 4677766 567789885 89999999999999999999999999999986 68999999864
Q ss_pred hhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH
Q psy12625 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL 183 (612)
Q Consensus 104 ~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 183 (612)
++|++|+.. ||||||||++|||+|
T Consensus 63 -----i~~~~q~~~---------------------------------------------------LSgGq~qrv~laral 86 (177)
T cd03222 63 -----PVYKPQYID---------------------------------------------------LSGGELQRVAIAAAL 86 (177)
T ss_pred -----EEEEcccCC---------------------------------------------------CCHHHHHHHHHHHHH
Confidence 788888532 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhcccceeeecCCeEEEe--cCccChh
Q psy12625 184 LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQ--GTVPGLV 257 (612)
Q Consensus 184 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~--G~~~~~~ 257 (612)
+.+|++++|||||+|||+.++..+.+.++++++++ .|||+++|++. .+.++||++++|+++-.++. |.|....
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 99999999999999999999999999999998764 89999999975 57779999999998876655 6665443
No 347
>KOG0059|consensus
Probab=100.00 E-value=4.8e-36 Score=351.79 Aligned_cols=225 Identities=27% Similarity=0.360 Sum_probs=205.2
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..+..+|+++.|.. ..+ +++++|+.|++||+.+++|||||||||++|+|.|..+| ++|++.++|.+
T Consensus 563 ~~~~~~~L~k~y~~--------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~-----t~G~a~i~g~~ 628 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG--------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP-----TSGEALIKGHD 628 (885)
T ss_pred ceEEEcceeeeecc--------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC-----CcceEEEecCc
Confidence 46888999988732 122 99999999999999999999999999999999999886 68999999998
Q ss_pred ccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 99 LQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 99 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
+... ...++.+||+||+|.+++.+|.+|++.+.++++ +.++.+.++.++..++.+||.+++|+.++.+|||+||
T Consensus 629 i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kR 705 (885)
T KOG0059|consen 629 ITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKR 705 (885)
T ss_pred cccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchh
Confidence 7532 336889999999999999999999999999987 4566677788999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
|+++|.|++.+|++++|||||+|+||.+++.+++++++++++|+.||.|||..+ +...+|||+.+|.+|++...|++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHH
Confidence 999999999999999999999999999999999999999998889999999976 7899999999999999999999999
Q ss_pred hhhHHh
Q psy12625 256 LVPYLS 261 (612)
Q Consensus 256 ~~~~f~ 261 (612)
+...|.
T Consensus 785 LKsrfG 790 (885)
T KOG0059|consen 785 LKSRYG 790 (885)
T ss_pred HHhhcC
Confidence 987664
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=338.85 Aligned_cols=207 Identities=19% Similarity=0.255 Sum_probs=165.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++||+++| +++.+|+||||+|++|++++|+||||||||||||+|+|..+| ++|+|.++|..
T Consensus 1 ~i~i~nls~~~----------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-----d~G~I~~~~~~- 64 (638)
T PRK10636 1 MIVFSSLQIRR----------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA-----DGGSYTFPGNW- 64 (638)
T ss_pred CEEEEEEEEEe----------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEecCCC-
Confidence 37899999988 567899999999999999999999999999999999999876 68999998742
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHH-----------------------Hhcc-CCCCCHHHHHHHHHHHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAA-----------------------HLKL-GNQYSRKAKESKVDSIADS 155 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-----------------------~l~~-~~~~~~~~~~~~v~~~l~~ 155 (612)
.++|++|++... ..|+.+.+.-.. .+.. .......+.+.+++++++.
T Consensus 65 --------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 135 (638)
T PRK10636 65 --------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHG 135 (638)
T ss_pred --------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Confidence 278888764332 245544332100 0000 0000011234578899999
Q ss_pred cCCc-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q psy12625 156 LSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN 234 (612)
Q Consensus 156 lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~ 234 (612)
+|+. +..++++++|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+.+
T Consensus 136 lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~ 211 (638)
T PRK10636 136 LGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDP 211 (638)
T ss_pred CCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHH
Confidence 9997 5789999999999999999999999999999999999999999999999998875 469999999975 6788
Q ss_pred cccceeeecCCeEE-EecCccC
Q psy12625 235 MADYLYVLTEGYCT-YQGTVPG 255 (612)
Q Consensus 235 ~~D~v~~L~~G~iv-~~G~~~~ 255 (612)
+||++++|++|+++ |.|+.+.
T Consensus 212 ~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 212 IVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred hcCEEEEEeCCEEEEecCCHHH
Confidence 99999999999986 6676553
No 349
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-36 Score=278.79 Aligned_cols=190 Identities=27% Similarity=0.367 Sum_probs=168.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++.+||+.+. +++.++.++||++.+||++-|.||||||||||||+|+|+.+| .+|+|.++|.++
T Consensus 2 ~L~a~~L~~~R----------~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p-----~~G~v~~~~~~i 66 (209)
T COG4133 2 MLEAENLSCER----------GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-----DAGEVYWQGEPI 66 (209)
T ss_pred cchhhhhhhcc----------CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC-----CCCeEEecCCCC
Confidence 45677887664 678899999999999999999999999999999999999997 689999999987
Q ss_pred cch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 100 QDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 100 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
.+. +.+++.+-|+-.++.+=+.+||.|||.|...+.-. .....+.+.++.+||....|.++++||-||||||+
T Consensus 67 ~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvA 140 (209)
T COG4133 67 QNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVA 140 (209)
T ss_pred ccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHH
Confidence 554 34667788998888888999999999997665421 12456889999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSA 230 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 230 (612)
|||-.++.+++.|||||+++||......+-.++..-+++|-.||.+||||..
T Consensus 141 lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 141 LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999999999999999999999888889999999999864
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.8e-35 Score=337.06 Aligned_cols=205 Identities=23% Similarity=0.316 Sum_probs=168.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.|. +++.+|+|+|+++++|++++|+||||||||||||+|+|+.+| .+|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~---------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p-----~~G~I~~~~~- 571 (718)
T PLN03073 507 PIISFSDASFGYP---------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP-----SSGTVFRSAK- 571 (718)
T ss_pred ceEEEEeeEEEeC---------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCceEEECCc-
Confidence 4699999999872 234699999999999999999999999999999999999986 5799988652
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHH
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv 177 (612)
..+||++|++ .+.+++.++.........+ .. .+++++++++.+|+.+ ..++++++|||||||||
T Consensus 572 --------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv 636 (718)
T PLN03073 572 --------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 636 (718)
T ss_pred --------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHH
Confidence 3599999975 3445666664332111111 11 1356788999999984 67899999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE-EecCccCh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT-YQGTVPGL 256 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~ 256 (612)
+||++|+.+|++|||||||+|||+.++..+++.|++. +| |||++|||+. .+..+||++++|++|+++ +.|+.++.
T Consensus 637 aLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999999999998888765 34 9999999976 678899999999999998 77766544
Q ss_pred h
Q psy12625 257 V 257 (612)
Q Consensus 257 ~ 257 (612)
.
T Consensus 713 ~ 713 (718)
T PLN03073 713 K 713 (718)
T ss_pred H
Confidence 3
No 351
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.6e-35 Score=282.20 Aligned_cols=161 Identities=24% Similarity=0.329 Sum_probs=137.3
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~ 120 (612)
..+++|+|+|+++++|++++|+||||||||||||+|.+ .+|++.++|.. .. ..++.++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---------~~G~v~~~~~~-~~--~~~~~~~~~~q------ 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---------ASGKARLISFL-PK--FSRNKLIFIDQ------ 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---------cCCcEEECCcc-cc--cccccEEEEhH------
Confidence 35679999999999999999999999999999999953 36899998763 11 12345788876
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHHhhC--CCEEEEeCCCC
Q psy12625 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSN--PSIIFLDEPTT 197 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~--p~illlDEPts 197 (612)
.+.++.+||.. ..++++.+||||||||++||++|+.+ |++++|||||+
T Consensus 68 -----------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 -----------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred -----------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 24677888876 47889999999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|.+|+....
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~~ 169 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSGKSG 169 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCCCCC
Confidence 99999999999999999878999999999986 44 68999999977654333
No 352
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.3e-35 Score=337.38 Aligned_cols=194 Identities=21% Similarity=0.316 Sum_probs=161.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.++ +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+++
T Consensus 451 ~i~~~nv~~~~~---------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-----~~G~i~~~~--- 513 (659)
T TIGR00954 451 GIKFENIPLVTP---------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV-----YGGRLTKPA--- 513 (659)
T ss_pred eEEEEeeEEECC---------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCeEeecC---
Confidence 599999999762 235799999999999999999999999999999999999875 579998753
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc---------CCCC
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT---------KHLS 170 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~---------~~LS 170 (612)
++.++||+|++.+++. |++||+.++...... ..+...+++++++++.+|+++..+++. ++||
T Consensus 514 ------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LS 584 (659)
T TIGR00954 514 ------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM--KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS 584 (659)
T ss_pred ------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh--hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCC
Confidence 4579999999998886 999999875322100 000112346788999999987665533 6899
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
||||||++|||||+.+|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|++++|+.
T Consensus 585 gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999998876 3899999999986 3588999999963
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.6e-35 Score=333.56 Aligned_cols=205 Identities=24% Similarity=0.307 Sum_probs=164.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++++|+|+||++++|++++|+||||||||||||+|+|+.+| ++|+|.++|..
T Consensus 3 ~l~i~~ls~~~----------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p-----~~G~I~~~~~~- 66 (635)
T PRK11147 3 LISIHGAWLSF----------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL-----DDGRIIYEQDL- 66 (635)
T ss_pred EEEEeeEEEEe----------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CCeEEEeCCCC-
Confidence 58999999988 557799999999999999999999999999999999999886 68999998732
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHH------------------------------HHhc--cCCCCCHHHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVA------------------------------AHLK--LGNQYSRKAKES 147 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~------------------------------~~l~--~~~~~~~~~~~~ 147 (612)
.++|++|++......+|.+++..+ ..+. .. .....+.+.
T Consensus 67 --------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 137 (635)
T PRK11147 67 --------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLEN 137 (635)
T ss_pred --------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHH
Confidence 256677654333334555543211 0000 00 000112345
Q ss_pred HHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q psy12625 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQ 227 (612)
Q Consensus 148 ~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 227 (612)
+++++++.+|+. .++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++. .|||++|||
T Consensus 138 ~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd 212 (635)
T PRK11147 138 RINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHD 212 (635)
T ss_pred HHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCC
Confidence 788999999997 388999999999999999999999999999999999999999999999998873 599999999
Q ss_pred CchHHHhcccceeeecCCeEE-EecCccC
Q psy12625 228 PSASLLNMADYLYVLTEGYCT-YQGTVPG 255 (612)
Q Consensus 228 ~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 255 (612)
+. .+.+.||++++|++|+++ +.|+.++
T Consensus 213 ~~-~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 213 RS-FIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred HH-HHHHhcCeEEEEECCEEEEecCCHHH
Confidence 75 678899999999999997 5576653
No 354
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-34 Score=272.53 Aligned_cols=154 Identities=36% Similarity=0.627 Sum_probs=138.5
Q ss_pred EEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc-
Q psy12625 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD- 101 (612)
Q Consensus 23 ~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~- 101 (612)
++|+++.+ .++.+++++|+++++|++++|+||||||||||+++|+|.++| .+|+|.++|.++..
T Consensus 2 ~~~~~~~~----------~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~-----~~G~i~~~~~~~~~~ 66 (157)
T cd00267 2 IENLSFRY----------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-----TSGEILIDGKDIAKL 66 (157)
T ss_pred eEEEEEEe----------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CccEEEECCEEcccC
Confidence 57888877 334799999999999999999999999999999999999875 58999999987643
Q ss_pred -hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 102 -HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 102 -~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
....++.++|++| |||||+||++||
T Consensus 67 ~~~~~~~~i~~~~q------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 67 PLEELRRRIGYVPQ------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred CHHHHHhceEEEee------------------------------------------------------CCHHHHHHHHHH
Confidence 2345678999998 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
++++.+|++++|||||+|||..++..+.+.+++++++++|+++++|++. .+...||+++++++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999877899999999976 5677889999999874
No 355
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-34 Score=356.35 Aligned_cols=202 Identities=24% Similarity=0.321 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++++|+++.|+. ..++++|+|+|+++++||.++|+||||||||||+++|.|..+| .+|.+.
T Consensus 614 ~I~~~~vsF~y~~-------~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----~~G~i~------ 675 (1495)
T PLN03232 614 AISIKNGYFSWDS-------KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-----AETSSV------ 675 (1495)
T ss_pred cEEEEeeEEEcCC-------CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc-----cCCCEE------
Confidence 6999999999842 1246799999999999999999999999999999999999986 455542
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCcccC----C
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLTK----H 168 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~~----~ 168 (612)
.+++.++||+|++.+++ .|++||+.|+.. .+ +++.+++++..+|.+. .++.++ +
T Consensus 676 ----~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~~------~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~ 740 (1495)
T PLN03232 676 ----VIRGSVAYVPQVSWIFN-ATVRENILFGSD------FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVN 740 (1495)
T ss_pred ----EecCcEEEEcCcccccc-ccHHHHhhcCCc------cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcc
Confidence 24678999999999997 699999998631 22 3456666666666432 234444 5
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL-LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
||||||||++||||+.++|+|++||||||+||+.+++++++. ++.+ .+++|+|++||+++ ....+|+|++|++|++
T Consensus 741 LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i 817 (1495)
T PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMI 817 (1495)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999765 4443 36799999999985 4678999999999999
Q ss_pred EEecCccChh
Q psy12625 248 TYQGTVPGLV 257 (612)
Q Consensus 248 v~~G~~~~~~ 257 (612)
++.|+.+++.
T Consensus 818 ~~~Gt~~eL~ 827 (1495)
T PLN03232 818 KEEGTFAELS 827 (1495)
T ss_pred EEecCHHHHH
Confidence 9999988765
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=9.2e-35 Score=327.13 Aligned_cols=183 Identities=29% Similarity=0.367 Sum_probs=156.2
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE-----------ECCEeccchH-hh---cc
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE-----------INETRLQDHR-ML---RK 107 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~-----------~~g~~~~~~~-~~---~~ 107 (612)
..+|++++ .+++||+++|+||||||||||||+|+|+++| .+|+|. ++|+++.+.. .. +.
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 160 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP-----NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEI 160 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC-----CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCc
Confidence 46999999 9999999999999999999999999999886 579997 8998864321 11 23
Q ss_pred ceEEEccCCCCCCC---CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh
Q psy12625 108 ESCYIMQDNLLQEL---LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL 184 (612)
Q Consensus 108 ~i~yv~Q~~~l~~~---lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 184 (612)
.+++.+|.....|. .||+|++... +.+++++++++.+||.+..|+.+++|||||||||+||++|+
T Consensus 161 ~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~ 228 (590)
T PRK13409 161 KVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALL 228 (590)
T ss_pred ceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 45666665444333 3999988531 12457889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.+|++++|||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|++++|+++
T Consensus 229 ~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 229 RDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999988 999999999986 678899999999864
No 357
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-35 Score=301.14 Aligned_cols=217 Identities=27% Similarity=0.390 Sum_probs=179.4
Q ss_pred CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
.+..+.|.|+++.|. +.+++|+++|+++++|+.+||+||||+||||++++|-.++++ .+|.|.+||
T Consensus 259 ~~g~v~F~~V~F~y~---------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~-----~sG~I~id~ 324 (497)
T COG5265 259 RLGAVAFINVSFAYD---------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV-----NSGSITIDG 324 (497)
T ss_pred ccceEEEEEEEeecc---------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC-----cCceEEEcc
Confidence 345699999999984 468899999999999999999999999999999999999885 689999999
Q ss_pred Eeccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHcCCccccCcccCC-
Q psy12625 97 TRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSLSISTCKNTLTKH- 168 (612)
Q Consensus 97 ~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~~~~- 168 (612)
+++.+. +.+|+.||.||||..||. -|...|+.++.. ..+.++..+ .+...++. +.+-.++.+++
T Consensus 325 qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vger 396 (497)
T COG5265 325 QDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGER 396 (497)
T ss_pred hhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchh
Confidence 998654 568999999999999886 588888877531 223333222 22223332 34445666764
Q ss_pred ---CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 169 ---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 169 ---LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
|||||||||+|||+++.+|+||++||.||+||..+.+++...|++++ .|+|.+++.|..+. .--+|.|++|++|
T Consensus 397 glklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~adeiivl~~g 473 (497)
T COG5265 397 GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDADEIIVLDNG 473 (497)
T ss_pred eeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCceEEEeeCC
Confidence 99999999999999999999999999999999999999999999987 56777888899864 3468999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
+|++.|+.++++.
T Consensus 474 ~i~erg~h~~ll~ 486 (497)
T COG5265 474 RIVERGTHEELLA 486 (497)
T ss_pred EEEecCcHHHHHH
Confidence 9999999887764
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-34 Score=354.51 Aligned_cols=201 Identities=23% Similarity=0.334 Sum_probs=168.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCce-eEEEECCEe
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS-GYIEINETR 98 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~-G~I~~~g~~ 98 (612)
.|+++|+++.|+. ..++++|+|+|+++++||.++|+||||||||||+++|.|.++| .+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~-------~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----~~GG~I~l---- 677 (1622)
T PLN03130 614 AISIKNGYFSWDS-------KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP-----RSDASVVI---- 677 (1622)
T ss_pred ceEEEeeEEEccC-------CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc-----CCCceEEE----
Confidence 6999999999842 1246799999999999999999999999999999999999986 57 88864
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-------CcccC----
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-------NTLTK---- 167 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~~~---- 167 (612)
++.++||+|++.+++ .|++||+.|+.. . .+++.+++++..+|.+.. ++.++
T Consensus 678 -------~~~Iayv~Q~p~Lfn-gTIreNI~fg~~------~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~ 739 (1622)
T PLN03130 678 -------RGTVAYVPQVSWIFN-ATVRDNILFGSP------F----DPERYERAIDVTALQHDLDLLPGGDLTEIGERGV 739 (1622)
T ss_pred -------cCeEEEEcCccccCC-CCHHHHHhCCCc------c----cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCC
Confidence 456999999999987 699999998631 1 234566777777665432 44444
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
+||||||||++||||+..+|+|++||||||+||+.+.+++.+ .++.+. +|+|+|++||+++ ....+|+|++|++|+
T Consensus 740 ~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~ 816 (1622)
T PLN03130 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGM 816 (1622)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCE
Confidence 599999999999999999999999999999999999998875 455543 5799999999984 478899999999999
Q ss_pred EEEecCccChh
Q psy12625 247 CTYQGTVPGLV 257 (612)
Q Consensus 247 iv~~G~~~~~~ 257 (612)
+++.|+.+++.
T Consensus 817 i~e~Gt~~eL~ 827 (1622)
T PLN03130 817 IKEEGTYEELS 827 (1622)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
No 359
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-34 Score=263.43 Aligned_cols=216 Identities=26% Similarity=0.380 Sum_probs=173.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe-
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR- 98 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~- 98 (612)
.++++++|+.| +...-.+||||.+.|||+++|+|+|||||||||++|++++.| ..|+|.+.-.+
T Consensus 6 LL~V~~lsk~Y----------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p-----~~G~v~Y~~r~~ 70 (258)
T COG4107 6 LLSVSGLSKLY----------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP-----DAGTVTYRMRDG 70 (258)
T ss_pred ceeehhhhhhh----------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC-----CCCeEEEEcCCC
Confidence 58889999887 666678999999999999999999999999999999999987 68999886432
Q ss_pred --c--c---ch---HhhccceEEEccCCCCCCCC------CHHHHHHH-HHHhccCCCCCHHHHHHHHHHHHHHcCCcc-
Q psy12625 99 --L--Q---DH---RMLRKESCYIMQDNLLQELL------TVEESLTV-AAHLKLGNQYSRKAKESKVDSIADSLSIST- 160 (612)
Q Consensus 99 --~--~---~~---~~~~~~i~yv~Q~~~l~~~l------Tv~e~l~~-~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~- 160 (612)
. . +. .-.|..=|+|.|+|.-=-.+ .+.|-++- +++ + -...++.+.++++++.++.
T Consensus 71 ~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-----H--YG~iR~~a~~WL~~VEI~~~ 143 (258)
T COG4107 71 QPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-----H--YGNIRAEAQDWLEEVEIDLD 143 (258)
T ss_pred CchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-----h--hhhHHHHHHHHHHhcccCcc
Confidence 1 1 11 11345679999987422112 23333221 110 1 1235667889999999875
Q ss_pred ccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccce
Q psy12625 161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYL 239 (612)
Q Consensus 161 ~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v 239 (612)
..|..+...|||+|||+.|||.|++.|++.|+||||-|||...+..++++++.|.. -|.+++++|||.. .+.-++||.
T Consensus 144 RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rl 222 (258)
T COG4107 144 RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRL 222 (258)
T ss_pred cccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcc
Confidence 45888999999999999999999999999999999999999999999999999986 5999999999975 456689999
Q ss_pred eeecCCeEEEecCccChhh
Q psy12625 240 YVLTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 240 ~~L~~G~iv~~G~~~~~~~ 258 (612)
++|++|++++.|-.+.+++
T Consensus 223 mvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 223 MVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred eeecCCCEecccccccccc
Confidence 9999999999998877653
No 360
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.9e-34 Score=349.25 Aligned_cols=205 Identities=20% Similarity=0.286 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.++++|+++.|+. +++++|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~--------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR--------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-----VEGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcCC--------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc-----CCcEEEECC---
Confidence 6999999998731 345799999999999999999999999999999999999886 689999987
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHH--HHHHHc-----CCccccCcccCCCChh
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVD--SIADSL-----SISTCKNTLTKHLSGG 172 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~--~~l~~l-----gL~~~~~~~~~~LSgG 172 (612)
.++||+|++.+++ .|++||+.++.. ..++..++.++ ++.+.+ |.+...+++..+||||
T Consensus 700 --------~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGG 764 (1522)
T TIGR00957 700 --------SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGG 764 (1522)
T ss_pred --------EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHH
Confidence 3899999998875 799999987532 12211111111 111222 2223345566789999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA--HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~--~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
||||++||||++.+|++++||||||+||+.++..+.+.+.+.. .+++|+|++||++.. ...+|+|++|++|+++..
T Consensus 765 QkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 765 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEee
Confidence 9999999999999999999999999999999999999997642 357999999999863 456999999999999999
Q ss_pred cCccChh
Q psy12625 251 GTVPGLV 257 (612)
Q Consensus 251 G~~~~~~ 257 (612)
|+.+++.
T Consensus 843 g~~~~l~ 849 (1522)
T TIGR00957 843 GSYQELL 849 (1522)
T ss_pred CCHHHHH
Confidence 9988765
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=4.2e-33 Score=306.59 Aligned_cols=207 Identities=26% Similarity=0.363 Sum_probs=172.7
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|+++.| +.+++++|+|+++.+|+.++|+|+||||||||||+|+|...| .+|+|...+.
T Consensus 2 ~~i~~~~ls~~~----------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~-----~~G~i~~~~~- 65 (530)
T COG0488 2 SMITLENLSLAY----------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP-----DSGEVTRPKG- 65 (530)
T ss_pred ceEEEeeeEEee----------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC-----CCCeEeecCC-
Confidence 368999999988 789999999999999999999999999999999999999876 6899976542
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhc-------------cCCC--------------CCHHHHHHHHHH
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK-------------LGNQ--------------YSRKAKESKVDS 151 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~-------------~~~~--------------~~~~~~~~~v~~ 151 (612)
.+++|++|++...+..||.+.+.-+..-. ++.. ...-+.+.++..
T Consensus 66 --------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~ 137 (530)
T COG0488 66 --------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEE 137 (530)
T ss_pred --------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHH
Confidence 24999999999999999999876542100 0000 000112467888
Q ss_pred HHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy12625 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231 (612)
Q Consensus 152 ~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 231 (612)
++..+|+.+. ++++++||||||.||+||++|+.+|++|+|||||++||..+..-+.+.|++. .| |+|++|||- ..
T Consensus 138 ~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR-~F 212 (530)
T COG0488 138 ALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR-YF 212 (530)
T ss_pred HHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH-HH
Confidence 9999999888 9999999999999999999999999999999999999999999999999754 56 999999994 57
Q ss_pred HHhcccceeeecCCeEE-EecCcc
Q psy12625 232 LLNMADYLYVLTEGYCT-YQGTVP 254 (612)
Q Consensus 232 i~~~~D~v~~L~~G~iv-~~G~~~ 254 (612)
+-+.|++|+-++.|++. |.|.-+
T Consensus 213 Ld~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 213 LDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHhhheEEecCCceeEecCCHH
Confidence 88999999999999765 555433
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.9e-33 Score=322.01 Aligned_cols=219 Identities=23% Similarity=0.253 Sum_probs=164.6
Q ss_pred CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
....|+++|++++| +++.+|+|+|++|++|+.++|+||||||||||||+|+|+... +.+.+|+|.+.+
T Consensus 174 ~~~~I~i~nls~~y----------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~--g~p~~g~I~~~~ 241 (718)
T PLN03073 174 AIKDIHMENFSISV----------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAID--GIPKNCQILHVE 241 (718)
T ss_pred CceeEEEceEEEEe----------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCCCCEEEEEe
Confidence 34579999999998 456799999999999999999999999999999999997421 123578887654
Q ss_pred Eecc----ch------------HhhccceEEEccCCCCCCCCCHHHHHHH------------------HHHhccCCCCCH
Q psy12625 97 TRLQ----DH------------RMLRKESCYIMQDNLLQELLTVEESLTV------------------AAHLKLGNQYSR 142 (612)
Q Consensus 97 ~~~~----~~------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~------------------~~~l~~~~~~~~ 142 (612)
+++. .. ...++.+++++|++.+... ++.++... ...+.. ...
T Consensus 242 Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~ 317 (718)
T PLN03073 242 QEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLEL---IDA 317 (718)
T ss_pred ccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHh---cCc
Confidence 4311 00 0123446777776543221 11111100 000000 001
Q ss_pred HHHHHHHHHHHHHcCCc-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy12625 143 KAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI 221 (612)
Q Consensus 143 ~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 221 (612)
...++++.++++.+|+. +..++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.||
T Consensus 318 ~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tv 394 (718)
T PLN03073 318 YTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTF 394 (718)
T ss_pred chHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEE
Confidence 12456788899999996 5578899999999999999999999999999999999999999999999999886 6799
Q ss_pred EEEecCCchHHHhcccceeeecCCeEE-EecCccC
Q psy12625 222 ICTLHQPSASLLNMADYLYVLTEGYCT-YQGTVPG 255 (612)
Q Consensus 222 i~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 255 (612)
|+++||.. .+.+.||++++|++|++. |.|+.++
T Consensus 395 iivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 395 IVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 99999975 678889999999999996 6776553
No 363
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.7e-33 Score=339.59 Aligned_cols=189 Identities=24% Similarity=0.354 Sum_probs=154.9
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l 122 (612)
+++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++| .++||+|++.+++ .
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~-----~~G~i~~~g-----------~iayv~Q~~~l~~-~ 501 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-----SEGKIKHSG-----------RISFSPQTSWIMP-G 501 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECC-----------EEEEEeCCCccCC-c
Confidence 5699999999999999999999999999999999999986 689999987 3899999999987 4
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHcCC--ccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSLSI--STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP 195 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL--~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP 195 (612)
||+||+.|+... .....++ ..++.++.+.. ....+.+..+||||||||++||||++.+|++++||||
T Consensus 502 Ti~eNI~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep 575 (1490)
T TIGR01271 502 TIKDNIIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 575 (1490)
T ss_pred cHHHHHHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999986321 1111111 12233333321 2223455678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 196 TTGLDYLNATNLVKL-LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 196 tsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||+||+.++.++.+. ++++. +|+|+|++||++.. ...||++++|++|+++..|+.+++.
T Consensus 576 ~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 576 FTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999985 66664 58999999999863 4569999999999999999988764
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.7e-32 Score=271.86 Aligned_cols=193 Identities=21% Similarity=0.277 Sum_probs=139.4
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHH-HHHHCCCCCCCCCCceeEEEEC------------CEeccchHhhc-
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLL-DILAGYRRPKKTETNSGYIEIN------------ETRLQDHRMLR- 106 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL-~~l~g~~~p~~~~~~~G~I~~~------------g~~~~~~~~~~- 106 (612)
.+.++|+|||+++++||+++|+||||||||||+ ..+.. .|++.+. .-...+....+
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA----------EGQRRYVESLSAYARQFLGQMDKPDVDSIEG 75 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH----------HHHHHHhhcccchhhhhhcccCccccccccC
Confidence 456799999999999999999999999999996 44431 1111100 00000101111
Q ss_pred cceEEEccCCC--CCCCCCHHH---HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHH
Q psy12625 107 KESCYIMQDNL--LQELLTVEE---SLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 107 ~~i~yv~Q~~~--l~~~lTv~e---~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia 180 (612)
...++..|++. ..+..+|.. ...+...+. ......++ .+.++.+||.+ ..++++.+||||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 149 (226)
T cd03270 76 LSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLA 149 (226)
T ss_pred CCceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHH
Confidence 23444444432 234445442 222221111 11212233 56899999987 58999999999999999999
Q ss_pred HHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEec
Q psy12625 181 LELLSNP--SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQG 251 (612)
Q Consensus 181 ~aL~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G 251 (612)
++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+ +.||++++| ++|+++++|
T Consensus 150 ral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 150 TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 9999998 599999999999999999999999999888999999999985 44 699999999 999999876
No 365
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.3e-32 Score=338.32 Aligned_cols=197 Identities=25% Similarity=0.352 Sum_probs=159.0
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~ 120 (612)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..+| .+|+|.++ +.++|++|++.+++
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~-----~~G~i~~~-----------~~i~yv~Q~~~l~~ 734 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI-----SEGRVWAE-----------RSIAYVPQQAWIMN 734 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCcEEEEC-----------CeEEEEeCCCccCC
Confidence 346799999999999999999999999999999999999886 57999753 46999999998875
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc--CCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCC
Q psy12625 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsg 198 (612)
.||+||+.++..... ....+..+...+++.++.+ |+....+++..+||||||||++|||||+.+|++++||||||+
T Consensus 735 -~Tv~enI~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~sa 812 (1560)
T PTZ00243 735 -ATVRGNILFFDEEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSA 812 (1560)
T ss_pred -CcHHHHHHcCChhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 799999987421100 0000001112344556666 777777888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 199 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||+.++..+++.+.....+|+|+|++||++.. ...+|+|++|++|++++.|+.++..
T Consensus 813 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 813 LDAHVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999987543222358999999999853 4789999999999999999988764
No 366
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1e-31 Score=246.04 Aligned_cols=214 Identities=22% Similarity=0.304 Sum_probs=173.1
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|.++|+++++..- ....-.-++++|+|++++.||++++=||||||||||||+|-|-+.| ++|+|.+.-..
T Consensus 3 ~~l~v~~~~KtFtlH---~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~-----d~G~I~v~H~g 74 (235)
T COG4778 3 TPLNVSNVSKTFTLH---QQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP-----DEGQILVRHEG 74 (235)
T ss_pred ceeeeecchhheEee---ecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC-----CCceEEEEeCc
Confidence 357889999887431 1111235799999999999999999999999999999999998875 78999885322
Q ss_pred --c--c--ch----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-CcccC
Q psy12625 99 --L--Q--DH----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-NTLTK 167 (612)
Q Consensus 99 --~--~--~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~~~ 167 (612)
+ . ++ ...++.+|||.|.-...|..+..|.+.-...- ...+.+..+.++.+++.++++.+.. +-.+.
T Consensus 75 ~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa 151 (235)
T COG4778 75 EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSLAPA 151 (235)
T ss_pred chhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc
Confidence 1 1 11 22357899999987777777666655444322 2566777888999999999997654 55678
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
..||||||||.|||.++.+-+||+|||||+.||..++..++++|++-+..|.++|=+-||-. .-...+||++-+..
T Consensus 152 TFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~vadR~~~~~~ 227 (235)
T COG4778 152 TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAVADRLLDVSA 227 (235)
T ss_pred ccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999999998889999999999953 44668999998864
No 367
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5.1e-31 Score=267.23 Aligned_cols=201 Identities=25% Similarity=0.345 Sum_probs=158.2
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----CCC-----CCCCCCCcee------EEEECCEeccch---
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA-----GYR-----RPKKTETNSG------YIEINETRLQDH--- 102 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~-----g~~-----~p~~~~~~~G------~I~~~g~~~~~~--- 102 (612)
...-|+|||..|+.|++++|.|+||||||||++.+. ... .|.......| -|.++..++...
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs 86 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS 86 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC
Confidence 345699999999999999999999999999998552 110 1111111122 367777665210
Q ss_pred ---------Hhhc----------------cceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC
Q psy12625 103 ---------RMLR----------------KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157 (612)
Q Consensus 103 ---------~~~~----------------~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg 157 (612)
+..| ..+.|..++......+||.|++.|...++ ..+++.++++.+|
T Consensus 87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vg 157 (261)
T cd03271 87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVG 157 (261)
T ss_pred cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcC
Confidence 1111 12556666666677899999999875432 1245678999999
Q ss_pred Ccc-ccCcccCCCChhhhhHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy12625 158 IST-CKNTLTKHLSGGQKKRLSIALELLSN---PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL 233 (612)
Q Consensus 158 L~~-~~~~~~~~LSgGerqRv~ia~aL~~~---p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~ 233 (612)
|.+ ..++++.+||||||||++||++|+.+ |++++|||||+|||+..+..+.+.|++++++|.|||+++|++. . .
T Consensus 158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-~-i 235 (261)
T cd03271 158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-V-I 235 (261)
T ss_pred CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H-H
Confidence 987 57999999999999999999999996 7999999999999999999999999999988999999999985 3 4
Q ss_pred hcccceeee------cCCeEEEecCc
Q psy12625 234 NMADYLYVL------TEGYCTYQGTV 253 (612)
Q Consensus 234 ~~~D~v~~L------~~G~iv~~G~~ 253 (612)
+.+|+++.| ++|+++++|++
T Consensus 236 ~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 236 KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 679999999 79999999974
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=1.1e-31 Score=246.87 Aligned_cols=131 Identities=39% Similarity=0.607 Sum_probs=118.7
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc--hHhhccceEEEccCCCCCCCCC
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLT 123 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lT 123 (612)
|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|+++.. ....++.++|++|++.+++.+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~-----~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t 75 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP-----DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLT 75 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE-----SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSB
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc-----cccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999875 68999999999765 2456889999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc----CCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT----KHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197 (612)
Q Consensus 124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~----~~LSgGerqRv~ia~aL~~~p~illlDEPts 197 (612)
|+|| ..+++++++++.+++.+..++.+ .+||||||||++||+||+.+|++++|||||+
T Consensus 76 v~~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 76 VREN----------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHH----------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccc----------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999 23456889999999888777776 8999999999999999999999999999996
No 369
>KOG0054|consensus
Probab=99.97 E-value=3.5e-31 Score=311.77 Aligned_cols=214 Identities=24% Similarity=0.297 Sum_probs=181.6
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++|++.+| +.+...||||||++|+|||.++|+|..|||||||.++|-.+..| .+|+|.+||.
T Consensus 1136 ~G~I~f~~~~~RY--------rp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~-----~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRY--------RPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP-----AEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEe--------CCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc-----cCCeEEEcCe
Confidence 4689999999998 33567899999999999999999999999999999999999886 6899999999
Q ss_pred eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-------Cccc--
Q psy12625 98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-------NTLT-- 166 (612)
Q Consensus 98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~~-- 166 (612)
++.+. ..+|++++.+||||.+|. -|||.||.-.. +.+ ++.+.+.|+..+|.+.. |..+
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLDPf~------e~s----D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLDPFD------EYS----DDEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceec-CccccccCccc------ccC----HHHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence 98653 789999999999999998 69999985321 222 34456666666654433 2222
Q ss_pred --CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 167 --KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 167 --~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
.++|-||||.+++||||+++++||+|||+|++.|+.+-..|-+.||+-= +++|||.+.|..+. +.+ +|||+||++
T Consensus 1272 gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld~ 1348 (1381)
T KOG0054|consen 1272 GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLDA 1348 (1381)
T ss_pred CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEeeC
Confidence 4699999999999999999999999999999999999999999998743 57999999999874 544 799999999
Q ss_pred CeEEEecCccChhh
Q psy12625 245 GYCTYQGTVPGLVP 258 (612)
Q Consensus 245 G~iv~~G~~~~~~~ 258 (612)
|+++++|+|.++.+
T Consensus 1349 G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1349 GRVVEFDSPAELLS 1362 (1381)
T ss_pred CeEeecCChHHHHh
Confidence 99999999998764
No 370
>KOG0054|consensus
Probab=99.97 E-value=6.1e-31 Score=309.73 Aligned_cols=207 Identities=27% Similarity=0.369 Sum_probs=175.8
Q ss_pred CCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC
Q psy12625 16 RKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95 (612)
Q Consensus 16 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~ 95 (612)
.....++++|.+++.+ +.+..+.|+|||+++++|+++||+||-|||||+||.+|.|-.+. .+|+|.++
T Consensus 514 ~~~~~i~i~~~sfsW~-------~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-----~sG~v~v~ 581 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWD-------SESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK-----LSGSVAVN 581 (1381)
T ss_pred CCCceEEEeeeeEecC-------CCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc-----ccceEEEc
Confidence 3445699999998852 22345589999999999999999999999999999999998874 78999998
Q ss_pred CEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc-------cC-
Q psy12625 96 ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL-------TK- 167 (612)
Q Consensus 96 g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-------~~- 167 (612)
|. ++||+|++.+++ -|||||+.|+..+ ++++.+++++...|++..+.. +|
T Consensus 582 gs-----------iaYv~Q~pWI~n-gTvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE 639 (1381)
T KOG0054|consen 582 GS-----------VAYVPQQPWIQN-GTVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGE 639 (1381)
T ss_pred Ce-----------EEEeccccHhhC-CcHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecC
Confidence 85 899999999886 7999999987422 346777888888876544333 33
Q ss_pred ---CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 168 ---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 168 ---~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+||||||||+++|||+-+|.+|.+||.|.|++|+....++.+..-.-.-+++|+|.+|||. +....+|+|++|++
T Consensus 640 rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~ 717 (1381)
T KOG0054|consen 640 RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKD 717 (1381)
T ss_pred CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecC
Confidence 5999999999999999999999999999999999999999977664444689999999986 46889999999999
Q ss_pred CeEEEecCccChhh
Q psy12625 245 GYCTYQGTVPGLVP 258 (612)
Q Consensus 245 G~iv~~G~~~~~~~ 258 (612)
|+++..|+.+|+.+
T Consensus 718 G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 718 GKIVESGTYEELLK 731 (1381)
T ss_pred CeEecccCHHHHHh
Confidence 99999999998873
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=1.1e-31 Score=246.87 Aligned_cols=210 Identities=27% Similarity=0.417 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.+.++|++..- =|-.+|+.+..||++-++|||||||||||-.++|+.+ .+|+|.++|.++
T Consensus 3 l~qln~v~~~t--------------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~------~sGsi~~~G~~l 62 (248)
T COG4138 3 LMQLNDVAEST--------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS------GSGSIQFAGQPL 62 (248)
T ss_pred eeeeccccccc--------------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC------CCceEEECCcch
Confidence 46677776432 2678999999999999999999999999999999987 489999999997
Q ss_pred cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
... .++.+.-+|..|+..-...+.|.+.+.+. .+.++....++++.+.++|++...+.+.+|||||-|||
T Consensus 63 ~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRV 134 (248)
T COG4138 63 EAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 134 (248)
T ss_pred hHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc--------CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceee
Confidence 532 45667778998887666668898887652 23455667789999999999999999999999999999
Q ss_pred HHHHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 178 SIALELLS-----NP--SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 178 ~ia~aL~~-----~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
-+|-..+. || ++|++|||.++||...+..+-.+|.+++.+|.+||++.||.+. ..+.+|++.+|+.|++...
T Consensus 135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEee
Confidence 99987653 44 7899999999999999999999999999999999999999985 6899999999999999999
Q ss_pred cCccChhh
Q psy12625 251 GTVPGLVP 258 (612)
Q Consensus 251 G~~~~~~~ 258 (612)
|..+++..
T Consensus 214 G~~~eVlt 221 (248)
T COG4138 214 GRREEVLT 221 (248)
T ss_pred cchhhhcC
Confidence 99998753
No 372
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.4e-30 Score=274.96 Aligned_cols=218 Identities=24% Similarity=0.360 Sum_probs=185.5
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...++++|++.. ..++|+||++++||+++|.|-=|||+|-|+++|.|..++ .+|+|.+||+
T Consensus 261 ~~~l~v~~l~~~--------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~-----~~G~i~l~G~ 321 (500)
T COG1129 261 EPVLEVRNLSGG--------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA-----SSGEILLDGK 321 (500)
T ss_pred CcEEEEecCCCC--------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC-----CCceEEECCE
Confidence 345777777532 157899999999999999999999999999999997653 5899999999
Q ss_pred eccc--h-HhhccceEEEccC---CCCCCCCCHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHHcCCcc-ccCcccCC
Q psy12625 98 RLQD--H-RMLRKESCYIMQD---NLLQELLTVEESLTVAAHLKLGN--QYSRKAKESKVDSIADSLSIST-CKNTLTKH 168 (612)
Q Consensus 98 ~~~~--~-~~~~~~i~yv~Q~---~~l~~~lTv~e~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~ 168 (612)
++.- + ...+..++|||.| .-++..++|.+|+.++...+... -.++...++.+++..+.+++.. ..+..+++
T Consensus 322 ~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~ 401 (500)
T COG1129 322 PVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGT 401 (500)
T ss_pred EccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhc
Confidence 8642 2 4577899999987 46888999999999883222211 2455556677899999999965 35789999
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
||||.||||.|||.|.++|++|||||||.|.|..++.+|.+++++++++|++||+++.+.. ++..+||||++|++|+++
T Consensus 402 LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~Gri~ 480 (500)
T COG1129 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMREGRIV 480 (500)
T ss_pred CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999975 799999999999999999
Q ss_pred EecCccC
Q psy12625 249 YQGTVPG 255 (612)
Q Consensus 249 ~~G~~~~ 255 (612)
..=+.++
T Consensus 481 ~e~~~~~ 487 (500)
T COG1129 481 GELDREE 487 (500)
T ss_pred EEecccc
Confidence 8655554
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=1.2e-30 Score=255.45 Aligned_cols=169 Identities=22% Similarity=0.302 Sum_probs=136.6
Q ss_pred cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCC----CCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625 47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT----ETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~----~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l 122 (612)
+++++++++| +++|+||||||||||+++|+|+.++... ....|++.++|++... ...++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~vfq~~~~~--- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK-PANFAEVTLTFDNSDGR--- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC-CCceEEEEEEEEcCCCc---
Confidence 6889999999 9999999999999999999999765311 1234678888876432 22357899999998776
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCC
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTG 198 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsg 198 (612)
+. . . .+++++++++. .+..++.+.+||||||||++||++++ .+|+++++||||+|
T Consensus 89 -------~~----~--~-----~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~ 147 (197)
T cd03278 89 -------YS----I--I-----SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA 147 (197)
T ss_pred -------ee----E--E-----ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence 11 0 0 12456677776 56678899999999999999999997 46699999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 199 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
||+.++..+.+.|+++++ +.|||++||++. . .+.+|+++.+..
T Consensus 148 LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 148 LDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred CCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 999999999999999875 689999999975 3 578999999864
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=3.7e-29 Score=275.41 Aligned_cols=200 Identities=29% Similarity=0.363 Sum_probs=166.7
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
+..++++|+++.|. +++.+++++|+.+++|+.+||+||||+|||||||+|+|...| .+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~---------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~-----~~G~v~~g~~ 384 (530)
T COG0488 319 KLVLEFENVSKGYD---------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP-----LSGTVKVGET 384 (530)
T ss_pred CeeEEEeccccccC---------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc-----CCceEEeCCc
Confidence 55799999999872 237899999999999999999999999999999999998875 4898876432
Q ss_pred eccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhh
Q psy12625 98 RLQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKK 175 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerq 175 (612)
-.+||..|+. .+.+..|+.|++.-.. + ...+..+...|..+++.. ...++++.||||||.
T Consensus 385 ---------v~igyf~Q~~~~l~~~~t~~d~l~~~~----~-----~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~ 446 (530)
T COG0488 385 ---------VKIGYFDQHRDELDPDKTVLEELSEGF----P-----DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKA 446 (530)
T ss_pred ---------eEEEEEEehhhhcCccCcHHHHHHhhC----c-----cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHH
Confidence 2489999986 4457779998875321 1 111567889999999975 458899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe-cCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ-GTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~-G~~~ 254 (612)
|+.+|+.++.+|.+|+|||||+.||..+...+.+.|.+. .-|||+++||.. .+-+.+++++.+.+ ++..+ |..+
T Consensus 447 Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~y~ 521 (530)
T COG0488 447 RLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGGYE 521 (530)
T ss_pred HHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCCHH
Confidence 999999999999999999999999999999999999775 359999999965 78999999999998 54433 5443
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=7e-29 Score=250.89 Aligned_cols=194 Identities=19% Similarity=0.301 Sum_probs=138.6
Q ss_pred ccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC----------------CCCCCCC-Ccee--EEEECCEe--
Q psy12625 40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY----------------RRPKKTE-TNSG--YIEINETR-- 98 (612)
Q Consensus 40 ~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~----------------~~p~~~~-~~~G--~I~~~g~~-- 98 (612)
++++.++++++ |++++|+||||||||||+++|+++ +.+..+. ..++ +|.+++.+
T Consensus 12 y~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 12 YKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred cccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCc
Confidence 35677888887 789999999999999999999843 2321110 0122 45555532
Q ss_pred --cc-chHhhccceEEEccCCCCCC-CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 99 --LQ-DHRMLRKESCYIMQDNLLQE-LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 99 --~~-~~~~~~~~i~yv~Q~~~l~~-~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
+. +....++.+++++|+..+++ ..|..|...+............ ......++.+.+++.+..++++.+||||||
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~--~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~ 164 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPY--YIVPQGKINSLTNMKQDEQQEMQQLSGGQK 164 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCc--EEEEcCchHHhhhccccccccccccCHHHH
Confidence 11 11235677999999887777 4677776666554432211000 000012333445666667889999999999
Q ss_pred hHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 175 KRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 175 qRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++++|+++|++ ++.+.||++++|.
T Consensus 165 ~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 165 SLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 99999999974 5899999999999999999999999999865 78899998885 4679999999985
No 376
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=9.4e-27 Score=245.75 Aligned_cols=224 Identities=23% Similarity=0.348 Sum_probs=192.3
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||+..-. ...+.+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++ .+|+|.++|+
T Consensus 255 ~~vL~V~~L~v~~~---------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~-----~~G~I~l~G~ 320 (501)
T COG3845 255 EVVLEVEDLSVKDR---------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP-----ASGRILLNGK 320 (501)
T ss_pred CeEEEEeeeEeecC---------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc-----CCceEEECCE
Confidence 56799999997631 235689999999999999999999999999999999999875 4599999999
Q ss_pred ec-c--ch-HhhccceEEEccCC---CCCCCCCHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHHcCCcc-ccCcc
Q psy12625 98 RL-Q--DH-RMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKL----GNQYSRKAKESKVDSIADSLSIST-CKNTL 165 (612)
Q Consensus 98 ~~-~--~~-~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~----~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ 165 (612)
++ . +. ...+..++|||.|. .+.+.+|+.||+.+...-+- ..-......++.+.++++++++.. -.+.+
T Consensus 321 ~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~ 400 (501)
T COG3845 321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP 400 (501)
T ss_pred eccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc
Confidence 96 2 22 33456899999985 56788999999987654321 112455667788999999999974 35667
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
+++||||++||+-+||+|..+|++|++.+||.|||..+...+.+.|.+++++|++|++++-|.+ +++.++|||.+|.+|
T Consensus 401 a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~G 479 (501)
T COG3845 401 ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEG 479 (501)
T ss_pred hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCC
Confidence 8999999999999999999999999999999999999999999999999999999999999976 799999999999999
Q ss_pred eEEEecCccCh
Q psy12625 246 YCTYQGTVPGL 256 (612)
Q Consensus 246 ~iv~~G~~~~~ 256 (612)
+++...++++.
T Consensus 480 ri~~~~~~~~~ 490 (501)
T COG3845 480 RIVGIVPPEEA 490 (501)
T ss_pred ceecccccccC
Confidence 99999888764
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2.2e-28 Score=248.66 Aligned_cols=179 Identities=19% Similarity=0.303 Sum_probs=138.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE-eccch----HhhccceEEEccCC---------CCCCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET-RLQDH----RMLRKESCYIMQDN---------LLQEL 121 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~-~~~~~----~~~~~~i~yv~Q~~---------~l~~~ 121 (612)
..+++|+||||||||||+++|++++.+. ..|++...|. ++... ...+..+++++|++ .+.+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~----~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ 100 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT----NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPE 100 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc----ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCce
Confidence 4499999999999999999999998642 2467777665 32111 12245799999985 34567
Q ss_pred CCHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHHcCCc--------------------cccCcccCCCChhhhhHHHHH
Q psy12625 122 LTVEESLTVAAHLKLGNQY-SRKAKESKVDSIADSLSIS--------------------TCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~lgL~--------------------~~~~~~~~~LSgGerqRv~ia 180 (612)
+||.+++......+. .. .++...+++.++++.+|+. +..++++.+||||||||++||
T Consensus 101 ltV~r~I~~~~~~~~--~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 101 ITVTRQIVLGGTNKY--LINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred EEEEEEEEcCCceEE--EECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 888888765322111 01 1223457888999999986 445688999999999999999
Q ss_pred HHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 181 LELL----SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 181 ~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
++|+ .+|+++++||||+|||+..+..+.+.|++++ +|.++|++||++ ++.+.||+++-+.
T Consensus 179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9998 5789999999999999999999999999985 488999999994 5688899998775
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=7.4e-28 Score=238.74 Aligned_cols=181 Identities=19% Similarity=0.134 Sum_probs=129.7
Q ss_pred cceEEEEe-CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC-EeccchHhhccceEEEccCCCCCCCCCH
Q psy12625 47 KDISGVFV-SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-TRLQDHRMLRKESCYIMQDNLLQELLTV 124 (612)
Q Consensus 47 ~~vs~~i~-~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g-~~~~~~~~~~~~i~yv~Q~~~l~~~lTv 124 (612)
++++|... +|++++|+|||||||||||++|++.+.. ...+....+. .+.......+..+++++|++.... ++
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g----~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~ 91 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG----KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RV 91 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec----CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EE
Confidence 56666543 5899999999999999999999964321 1122222221 111111223567999999874321 11
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhh----------CCCEEEEeC
Q psy12625 125 EESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS----------NPSIIFLDE 194 (612)
Q Consensus 125 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~----------~p~illlDE 194 (612)
.... ..+.++..+.+ .++..++.+..++++.+||||||||++||++|+. +|+++++||
T Consensus 92 ~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDE 159 (213)
T cd03279 92 ERSR----------GLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDE 159 (213)
T ss_pred EEec----------CCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeC
Confidence 1110 22222211111 2455557777899999999999999999999985 578999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 195 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
||+|||+.++..+.+.|+++++++.|||++||++. .+...+|+++++++|.
T Consensus 160 p~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 160 GFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999999999999999999877999999999986 5778899999999874
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=8.1e-29 Score=245.09 Aligned_cols=179 Identities=17% Similarity=0.221 Sum_probs=137.0
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~ 120 (612)
+++.+++++++ ++++|+||||||||||+++|.-. +|.+.. ...++++++++|+...++
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~---------------~G~~~~--~~~~~~i~~~~~~~~~~~ 72 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV---------------FGFRAS--KMRQKKLSDLIHNSAGHP 72 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH---------------hccCHH--HhhhhhHHHHhcCCCCCC
Confidence 66779999987 89999999999999999999722 222211 111256899999988888
Q ss_pred CCCHHHHHHHHHHhccC-----CCCCHHHHHH--HHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhh----CCCE
Q psy12625 121 LLTVEESLTVAAHLKLG-----NQYSRKAKES--KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS----NPSI 189 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~----~p~i 189 (612)
.+|++|++.+....... .....+.... ..+++++.++|.+..+++++.||+|||||++||++++. +|++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 73 NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 89998887654332100 0111111111 12567788889888899999999999999999999974 4799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 190 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+++||||+|||+.++..+.+.++++++ +.++|+++|++ ++.+.||++++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999999999999999999999864 56778888985 57899999999964
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=2.2e-26 Score=277.91 Aligned_cols=137 Identities=27% Similarity=0.370 Sum_probs=114.8
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHh---hCCCEEEEe
Q psy12625 118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELL---SNPSIIFLD 193 (612)
Q Consensus 118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~---~~p~illlD 193 (612)
.+...||.|++.+...-........++..+++ ++++.+||.+. .++.+.+||||||||++||++|+ .+|++++||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD 837 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD 837 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 45568999999886542211111233445566 58899999986 79999999999999999999998 699999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec------CCeEEEecCccChh
Q psy12625 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT------EGYCTYQGTVPGLV 257 (612)
Q Consensus 194 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 257 (612)
|||+|||+.++..+++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++.
T Consensus 838 EPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 838 EPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999988999999999986 45 8999999996 78999999998764
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=3.7e-27 Score=232.00 Aligned_cols=166 Identities=26% Similarity=0.346 Sum_probs=126.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHH----CCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCC-----CC
Q psy12625 48 DISGVFVSKELSVILGPSGSGKTKLLDILA----GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN-----LL 118 (612)
Q Consensus 48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~----g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~-----~l 118 (612)
..++++.+| +++|+|||||||||||++|. |..+| ..|.+..+... ......+..+++++|++ ..
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~-----~~~~~~~~~~~-i~~~~~~~~v~~~f~~~~~~~~~v 87 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP-----NSKGGAHDPKL-IREGEVRAQVKLAFENANGKKYTI 87 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc-----ccccccchHHH-HhCCCCcEEEEEEEEeCCCCEEEE
Confidence 344667788 99999999999999999995 87664 23444411111 11123456799999987 33
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH------HHHHHHHhhCCCEEEE
Q psy12625 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR------LSIALELLSNPSIIFL 192 (612)
Q Consensus 119 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR------v~ia~aL~~~p~illl 192 (612)
...+|+.|++.+. ++ ..+++.+ ++.+++||+||||| ++||++++.+|+++++
T Consensus 88 ~r~~~~~~~~~~~---------~~----~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 88 TRSLAILENVIFC---------HQ----GESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred EEEhhHhhceeee---------ch----HHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 4445777777542 11 1222232 77889999999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecC
Q psy12625 193 DEPTTGLDYLNAT-NLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 193 DEPtsgLD~~~~~-~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
||||++||+.++. .+.+.|++++++ |.+||+++|++. ....||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 889999999975 3578999999964
No 382
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.3e-27 Score=239.78 Aligned_cols=203 Identities=24% Similarity=0.279 Sum_probs=167.5
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
-.|+++|+.|.|+. . .-=+..||+++++||++-|+|.||||||||++.|.|+.+| .+|+|.+||++
T Consensus 321 ~~lelrnvrfay~~--------~-~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P-----qsG~I~ldg~p 386 (546)
T COG4615 321 KTLELRNVRFAYQD--------N-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP-----QSGEILLDGKP 386 (546)
T ss_pred cceeeeeeeeccCc--------c-cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC-----CCCceeECCcc
Confidence 36999999998843 1 1347899999999999999999999999999999999997 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc---Cccc--CCCCh
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK---NTLT--KHLSG 171 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~---~~~~--~~LSg 171 (612)
+.. .+++|+.++-|+-|..+|+.+- .++. +...+.++.+++++.|.+.. |... -.||-
T Consensus 387 V~~e~ledYR~LfSavFsDyhLF~~ll------------~~e~---~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLSt 451 (546)
T COG4615 387 VSAEQLEDYRKLFSAVFSDYHLFDQLL------------GPEG---KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLST 451 (546)
T ss_pred CCCCCHHHHHHHHHHHhhhHhhhHhhh------------CCcc---CCChHHHHHHHHHHHHhhhhcccCCccccccccc
Confidence 854 3678998888888887776321 1111 12345678888888887643 3322 25999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
|||||+++-.||+-+-+|+++||=-+.-||.-++.+.+.+--+ +++|+||+.+|||. ..+..+||++.+++|++++.
T Consensus 452 GQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred chHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999999999999999999999877654 56899999999995 46899999999999999886
Q ss_pred cC
Q psy12625 251 GT 252 (612)
Q Consensus 251 G~ 252 (612)
-+
T Consensus 530 tg 531 (546)
T COG4615 530 TG 531 (546)
T ss_pred cc
Confidence 53
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=1e-25 Score=262.24 Aligned_cols=125 Identities=25% Similarity=0.396 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHHhhCC---CEEEEeCCCC
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSNP---SIIFLDEPTT 197 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~p---~illlDEPts 197 (612)
+||.|++.|...++ . ..+..+.++.+||.+ ..++++.+||||||||+.||++|+.+| ++++|||||+
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPts 862 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTT 862 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence 78889888865432 1 123467899999987 579999999999999999999999999 9999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV 257 (612)
Q Consensus 198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 257 (612)
|||+..+..+++.|++++++|.|||+++|++. .+ ..+|+++.| ++|++++.|+++++.
T Consensus 863 GLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 863 GLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999888999999999985 34 689999999 689999999988764
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=1.5e-25 Score=245.68 Aligned_cols=193 Identities=26% Similarity=0.398 Sum_probs=157.1
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++|++..-+ +.+..|++.|+.+++||-+.|.||||||||||+|+|+|+-+. -+|+|..-.
T Consensus 390 ~~~i~~~nl~l~~p---------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~-----g~G~I~~P~- 454 (604)
T COG4178 390 DHGITLENLSLRTP---------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW-----GSGRISMPA- 454 (604)
T ss_pred cceeEEeeeeEECC---------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc-----CCCceecCC-
Confidence 46799999998753 345899999999999999999999999999999999999984 357765431
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccC------CCCh
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK------HLSG 171 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~------~LSg 171 (612)
...+-|+||.|.+... |.+|.+.++.... .. .++.+.++|.++||.+..++.-. .||+
T Consensus 455 --------~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~ 518 (604)
T COG4178 455 --------DSALLFLPQRPYLPQG-TLREALCYPNAAP---DF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSG 518 (604)
T ss_pred --------CCceEEecCCCCCCCc-cHHHHHhCCCCCC---CC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcCh
Confidence 2347899999987664 9999987753211 12 34568899999999887655432 4999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
|||||+++||.|+++|++++|||.||+||+.+...+.+.+++-. .+.|||.+.|.+. +..+.++.+-+.+
T Consensus 519 GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~~ 588 (604)
T COG4178 519 GEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELLD 588 (604)
T ss_pred hHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeecc
Confidence 99999999999999999999999999999999999999998733 4789999999975 4667777666543
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1e-24 Score=253.47 Aligned_cols=124 Identities=27% Similarity=0.400 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHHhh---CCCEEEEeCCCC
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLS---NPSIIFLDEPTT 197 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~---~p~illlDEPts 197 (612)
+||.|.+.|...+. . ..+..++++.+||.. ..++++.+||||||||+.||++|+. +|++++|||||+
T Consensus 790 ~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPts 860 (924)
T TIGR00630 790 MTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTT 860 (924)
T ss_pred CcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCC
Confidence 67777777754432 1 123467899999986 4789999999999999999999997 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccCh
Q psy12625 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGL 256 (612)
Q Consensus 198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 256 (612)
|||+..+..+.+.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 861 gLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 861 GLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999888999999999985 34 679999999 78999999988754
No 386
>KOG0927|consensus
Probab=99.92 E-value=3.6e-25 Score=234.67 Aligned_cols=221 Identities=21% Similarity=0.308 Sum_probs=152.4
Q ss_pred CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
..-.+.+.|+++.+ .++.+++|+++++.+|+-++|+|||||||||+|++|+|...|. +..=.++.-.
T Consensus 72 ~s~dvk~~sls~s~----------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~---p~~~d~y~ls 138 (614)
T KOG0927|consen 72 ISRDVKIESLSLSF----------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI---PEHIDFYLLS 138 (614)
T ss_pred ccccceeeeeeecc----------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC---Ccccchhhhc
Confidence 34468899999887 5688999999999999999999999999999999999998873 2222333333
Q ss_pred Eeccc--hHhhcc----------ceEEEccCCCCC-CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-cccc
Q psy12625 97 TRLQD--HRMLRK----------ESCYIMQDNLLQ-ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-STCK 162 (612)
Q Consensus 97 ~~~~~--~~~~~~----------~i~yv~Q~~~l~-~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~ 162 (612)
+++.. ...... ++.|...+-... +.- -.+.+.- ...+. .....+..+.++-+++..+|. .+..
T Consensus 139 ~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~-~~~~l~~-~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 139 REIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDK-EKDELDE-LYERL-DEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred ccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccch-hhhHHHH-HHHHH-HhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 33211 111111 111100000000 000 0000000 00000 012223345566677777775 5678
Q ss_pred CcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242 (612)
Q Consensus 163 ~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 242 (612)
++.+.++|||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+..+ .++++++|..+ .+-..|.+|+-|
T Consensus 216 ~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QD-fln~vCT~Ii~l 292 (614)
T KOG0927|consen 216 DKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQD-FLNGVCTNIIHL 292 (614)
T ss_pred HHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchh-hhhhHhhhhhee
Confidence 999999999999999999999999999999999999999999999998876532 27888889854 788999999999
Q ss_pred cCCe-EEEecCccCh
Q psy12625 243 TEGY-CTYQGTVPGL 256 (612)
Q Consensus 243 ~~G~-iv~~G~~~~~ 256 (612)
.+++ +.|.|+.+..
T Consensus 293 ~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 293 DNKKLIYYEGNYDQY 307 (614)
T ss_pred cccceeeecCCHHHH
Confidence 9998 6677776643
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=8e-25 Score=214.38 Aligned_cols=171 Identities=21% Similarity=0.208 Sum_probs=125.6
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc---hHhhccceEEEccCCCCCCCC
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD---HRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~---~~~~~~~i~yv~Q~~~l~~~l 122 (612)
++++++++.+| +.+|+|||||||||||.+|........ . ....|..+.+ ...-...+.+++|+....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~-----~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA-----S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc-----c-cccccccHHHHhhCCCCeEEEEEEEEcCCccC--
Confidence 46778888887 889999999999999999975432110 0 0011211111 0111345778888766554
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH----hhCCCEEEEeCCCCC
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL----LSNPSIIFLDEPTTG 198 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL----~~~p~illlDEPtsg 198 (612)
| ... ...+++++++++. .+..++++++||+|||||++||+++ +.+|++++|||||+|
T Consensus 83 ----~-----------~~~-~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g 143 (198)
T cd03276 83 ----N-----------PLC-VLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF 143 (198)
T ss_pred ----C-----------cCC-HHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence 1 011 1124567777777 6778999999999999999999999 589999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC---CCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 199 LDYLNATNLVKLLRDMAHQ---GTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 199 LD~~~~~~i~~~l~~l~~~---g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
||..++..+.+.|++++++ ++||++++|++. ++.+ +|+|.+|..++
T Consensus 144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRMKD 192 (198)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence 9999999999999998653 368999999986 4555 49999998754
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=1e-24 Score=206.15 Aligned_cols=230 Identities=19% Similarity=0.257 Sum_probs=174.5
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
+.++|++..+.+ +.+..++++++|++++.||+-+++|.||||||-..|+|+|..+.. -..+.-+..+++.++.
T Consensus 4 LDIrnL~IE~~T------sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdn-W~vTADR~Rf~~idLL 76 (330)
T COG4170 4 LDIRNLTIEFKT------SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDIDLL 76 (330)
T ss_pred ccccceEEEEec------CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccc-eEEEhhhcccccchhh
Confidence 567888888865 346678999999999999999999999999999999999987621 0012233445555442
Q ss_pred c--hHhh----ccceEEEccCCC--CCCCCCHHHHHHHHH--HhccCCCCC-HHHHHHHHHHHHHHcCCcccc---Cccc
Q psy12625 101 D--HRML----RKESCYIMQDNL--LQELLTVEESLTVAA--HLKLGNQYS-RKAKESKVDSIADSLSISTCK---NTLT 166 (612)
Q Consensus 101 ~--~~~~----~~~i~yv~Q~~~--l~~~lTv~e~l~~~~--~l~~~~~~~-~~~~~~~v~~~l~~lgL~~~~---~~~~ 166 (612)
. +++. -+.+++++|++. +-|.-+|...+.-.. ....++-.. -.-+++++-+++.++|+.+.. ..++
T Consensus 77 ~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP 156 (330)
T COG4170 77 RLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP 156 (330)
T ss_pred cCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc
Confidence 1 1222 356889999984 334333333221110 000000000 012456788999999998765 4578
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|+||+.++||.. .+.+.||++-||.-|
T Consensus 157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCG 235 (330)
T COG4170 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCG 235 (330)
T ss_pred chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEec
Confidence 89999999999999999999999999999999999999999999999987 7999999999986 689999999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
+-++.++.+++++
T Consensus 236 Q~~ESa~~e~l~~ 248 (330)
T COG4170 236 QTVESAPSEELVT 248 (330)
T ss_pred ccccccchhHHhc
Confidence 9999999888764
No 389
>KOG0927|consensus
Probab=99.91 E-value=6.1e-25 Score=233.00 Aligned_cols=202 Identities=19% Similarity=0.309 Sum_probs=157.7
Q ss_pred CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
++..+.++|+++.|.. +-.++++++|-+..++.+|++||||+|||||||++.|.+.| ..|.|.-.-
T Consensus 386 p~pvi~~~nv~F~y~~---------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-----~~G~vs~~~ 451 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSD---------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-----TIGMVSRHS 451 (614)
T ss_pred CCCeEEEeccccCCCC---------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc-----ccccccccc
Confidence 3456889999998732 22799999999999999999999999999999999999987 467775433
Q ss_pred EeccchHhhccceEEEccC--CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhh
Q psy12625 97 TRLQDHRMLRKESCYIMQD--NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQ 173 (612)
Q Consensus 97 ~~~~~~~~~~~~i~yv~Q~--~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGe 173 (612)
+. .+++..|+ +.+.-..++-|++.=. +++....+.+..++.++||+ +..+.++++||+||
T Consensus 452 H~---------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gq 514 (614)
T KOG0927|consen 452 HN---------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQ 514 (614)
T ss_pred cc---------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccchhhccccc
Confidence 22 12333333 2233345666665321 12223456788999999999 55677889999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE-EEecC
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC-TYQGT 252 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~ 252 (612)
|+||..|+.++..|.+|+|||||+|||..+...+.+.|.+. ..+||.++||.. .|.++++++.+..+|.+ .+.|+
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCcc
Confidence 99999999999999999999999999999999999988765 247899999986 68999999999998755 45554
Q ss_pred c
Q psy12625 253 V 253 (612)
Q Consensus 253 ~ 253 (612)
.
T Consensus 591 i 591 (614)
T KOG0927|consen 591 I 591 (614)
T ss_pred H
Confidence 3
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.91 E-value=6.9e-24 Score=220.63 Aligned_cols=189 Identities=25% Similarity=0.304 Sum_probs=149.1
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++|.++++++ ++ --|+-=.+++..||+++++||||-||||+.++|||.++| ++|+ ..
T Consensus 341 ~lv~y~~~~k~~----------g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP-----deg~----~~- 399 (591)
T COG1245 341 TLVEYPDLKKTY----------GD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP-----DEGS----EE- 399 (591)
T ss_pred eeeecchheeec----------Cc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC-----CCCC----Cc-
Confidence 345666666655 22 234555677888999999999999999999999999997 4555 11
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
.-.++|=||--.--...||++.+.-...-+... .-...++++-|.|+...++.+.+|||||.|||+
T Consensus 400 -------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRva 465 (591)
T COG1245 400 -------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS-------SYFKTEIVKPLNLEDLLERPVDELSGGELQRVA 465 (591)
T ss_pred -------cceEeecceeecCCCCCcHHHHHHHhhhhhccc-------chhHHhhcCccchHHHHhcccccCCchhHHHHH
Confidence 124788888644445689999876544322211 123467889999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
||.+|..++++.+||||++.||+..+..+.+.|++... .++|.+++-||.. .+--++||+++..
T Consensus 466 Iaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 466 IAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred HHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 99999999999999999999999999999999999987 6889999999975 4556778887654
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=2.7e-24 Score=218.06 Aligned_cols=177 Identities=19% Similarity=0.249 Sum_probs=118.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe-c------cc--hHhhccceEEEccCCCC-CCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR-L------QD--HRMLRKESCYIMQDNLL-QELLT 123 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~-~------~~--~~~~~~~i~yv~Q~~~l-~~~lT 123 (612)
.++ +++|+|||||||||||++|++...+ ..|++..++.+ + .. .....-.+.|..|++.. .-..+
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~-----~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~ 94 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGE-----KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRI 94 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCC-----CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEE
Confidence 344 9999999999999999999998764 23444333211 0 00 00112223444443221 00011
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc----------------------cCcccCCCChhhhhHHHHHH
Q psy12625 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC----------------------KNTLTKHLSGGQKKRLSIAL 181 (612)
Q Consensus 124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~----------------------~~~~~~~LSgGerqRv~ia~ 181 (612)
+.+.. ...+... +...++.++++++.+|+... .++++.+||||||||++||+
T Consensus 95 ~~~~~---~~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~ 168 (247)
T cd03275 95 ITGGS---SSYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALAL 168 (247)
T ss_pred EECCc---eEEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHH
Confidence 11110 0011111 11223456788888888522 23345789999999999999
Q ss_pred HHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 182 ELLSN----PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 182 aL~~~----p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+++.+ |+++++||||+|||+..+..+.+.|++++++|.+||+++|++ ++.+.+|++++|..
T Consensus 169 al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 169 LFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 99875 899999999999999999999999999987799999999995 45789999999864
No 392
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.88 E-value=5.2e-24 Score=208.51 Aligned_cols=208 Identities=25% Similarity=0.437 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy12625 338 SQFCILLKRTLIKCFRDRFLT-KVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEF 416 (612)
Q Consensus 338 ~Q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er 416 (612)
+|++.+++|+++..+|||... ...++..++.++++|.+|.+++++.++. ++.|++++.+...++....+....+..|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999988444444 77888888888888777666667788899
Q ss_pred hHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CC
Q psy12625 417 EITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LD 495 (612)
Q Consensus 417 ~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~ 495 (612)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.+++++ ++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999887 77888888999999999999999998 78
Q ss_pred hhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHh
Q psy12625 496 VKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVY 548 (612)
Q Consensus 496 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f 548 (612)
.+.+..+.+++..+++++||.++|.+++|+|++|+.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999999999999999999999999998875
No 393
>KOG0060|consensus
Probab=99.88 E-value=3.7e-22 Score=213.37 Aligned_cols=200 Identities=22% Similarity=0.291 Sum_probs=157.0
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|++++|+..-+. .+..+++|+|+.|+.|+-+.|.||||||||+|||+|+|+-+- .+|.+..-.+
T Consensus 431 Dn~i~~e~v~l~tPt--------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~-----~~G~l~k~~~ 497 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPT--------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS-----TGGKLTKPTD 497 (659)
T ss_pred cceEEeeeeeecCCC--------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc-----CCCeEEeccc
Confidence 357999999987532 356688999999999999999999999999999999999873 5788865432
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc-----------
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT----------- 166 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~----------- 166 (612)
. -.+.+-|+||.|..-- -|.||.+.|+..--. ...+...++++.+.|+.++|.|..++.-
T Consensus 498 ~------~~~~lfflPQrPYmt~-GTLRdQvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~ 568 (659)
T KOG0060|consen 498 G------GPKDLFFLPQRPYMTL-GTLRDQVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWM 568 (659)
T ss_pred C------CCCceEEecCCCCccc-cchhheeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHH
Confidence 2 1155899999997544 499999888632111 1112234567888888888877654432
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
..||+||+||++.||-+.++|++-+|||-||++|......+.+.+++ .|.|.|-+.|..+ +.+.=|.++-|+.
T Consensus 569 dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 569 DVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred hhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 24999999999999999999999999999999999999988887765 5899999999975 4556688888865
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.87 E-value=3.5e-22 Score=196.18 Aligned_cols=146 Identities=19% Similarity=0.226 Sum_probs=112.7
Q ss_pred ccceEEEEeCC-eEEEEECCCCCcHHHHHHHHH--------CCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCC
Q psy12625 46 LKDISGVFVSK-ELSVILGPSGSGKTKLLDILA--------GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116 (612)
Q Consensus 46 L~~vs~~i~~G-e~~aI~GpsGsGKSTLL~~l~--------g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~ 116 (612)
+.++|+++.+| ++++|.||||||||||||+|+ |..-| .. . ...++|+.|..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp-----~~-----------~----~~~~~~~~~~~ 76 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP-----AA-----------E----GSSLPVFENIF 76 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc-----cc-----------c----cccCcCccEEE
Confidence 45899999999 489999999999999999998 43221 00 0 01133333321
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCC
Q psy12625 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196 (612)
Q Consensus 117 ~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPt 196 (612)
..++..+..+...+.+|+||||++.|+++ +.+|+++++||||
T Consensus 77 -------------------------------------~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 77 -------------------------------------ADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred -------------------------------------EecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 11222223445557899999999999988 4899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 197 TGLDYLNATNLV-KLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 197 sgLD~~~~~~i~-~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
+|||+..+..+. ..++++.+.|.++|++||+. ++.+++|++..|++|++.+.+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 999999999996 47888877789999999984 578999999999999998874
No 395
>KOG0062|consensus
Probab=99.87 E-value=4.6e-22 Score=210.19 Aligned_cols=202 Identities=21% Similarity=0.244 Sum_probs=142.7
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|...|.+..| +.|.+|++-++++..|.-++++|+||+|||||||+|+. |.|..-..
T Consensus 78 ~~Di~~~~fdLa~----------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----------~~v~~f~v 136 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY----------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----------GQVSGFHV 136 (582)
T ss_pred ccceeeeeeeeee----------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----------cCcCccCc
Confidence 4467777777776 78999999999999999999999999999999999986 12211111
Q ss_pred eccchHhhccceEEEccC-CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhh
Q psy12625 98 RLQDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKK 175 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerq 175 (612)
+ .+.+ -.+++-. +.+....++.+-+.--..+. ... ..++...++|..+|.++. ..+++++||||=|-
T Consensus 137 e----qE~~--g~~t~~~~~~l~~D~~~~dfl~~e~~l~--~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrM 205 (582)
T KOG0062|consen 137 E----QEVR--GDDTEALQSVLESDTERLDFLAEEKELL--AGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRM 205 (582)
T ss_pred h----hhee--ccchHHHhhhhhccHHHHHHHHhhhhhh--ccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhh
Confidence 1 1111 1122211 11222222222221111111 000 233444558999999764 57788999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE-EEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC-TYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~ 254 (612)
|+++||||..+|+||+|||||+.||..+..-+.+.|+.+ +.|+|+++||- ..+-..|..|+-+++-++ .|.|..+
T Consensus 206 rlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr-~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 206 RLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDR-NFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred HHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccH-HHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 999999999999999999999999999999999998775 37999999995 467888999998887655 3556544
Q ss_pred C
Q psy12625 255 G 255 (612)
Q Consensus 255 ~ 255 (612)
+
T Consensus 282 ~ 282 (582)
T KOG0062|consen 282 Q 282 (582)
T ss_pred H
Confidence 3
No 396
>KOG2355|consensus
Probab=99.86 E-value=4.3e-21 Score=181.30 Aligned_cols=213 Identities=21% Similarity=0.292 Sum_probs=161.5
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++++.|+|+. ..+++-|+|++++.|.-..++|.||||||||||+|+|-.- ...|.|.++|+
T Consensus 11 ~~aievsgl~f~y~~---------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----v~~~~v~Vlgr 76 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV---------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----VGGGVVQVLGR 76 (291)
T ss_pred cceEEEeccEEeccc---------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----ccCCeEEEcCc
Confidence 347999999999853 3489999999999999999999999999999999999643 12488999997
Q ss_pred eccc-h------------HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc
Q psy12625 98 RLQD-H------------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164 (612)
Q Consensus 98 ~~~~-~------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 164 (612)
+.-. . .++.+.++.-- +--+...+++.+.+ |+.. . .+. ++-+.+++.++++- .-
T Consensus 77 saFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g-~dp---~Rre~LI~iLDIdl--~W 143 (291)
T KOG2355|consen 77 SAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----G-DDP---ERREKLIDILDIDL--RW 143 (291)
T ss_pred CccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhcc-----C-CCh---hHhhhhhhheeccc--eE
Confidence 6421 0 12333333332 22234456665543 3221 1 111 34456677776652 23
Q ss_pred ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec
Q psy12625 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
+...+|-|||+||.|++.|+..=++|+|||-|-.||..++..+++.+++-++ .|.||+..||-.+ -+.....+++-|+
T Consensus 144 RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi~ 222 (291)
T KOG2355|consen 144 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYIK 222 (291)
T ss_pred EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEec
Confidence 4567999999999999999999999999999999999999999999999887 6999999999876 4678899999999
Q ss_pred CCeEEEecCccChhh
Q psy12625 244 EGYCTYQGTVPGLVP 258 (612)
Q Consensus 244 ~G~iv~~G~~~~~~~ 258 (612)
+|+++..-+.+++.+
T Consensus 223 ~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 223 SGKLVDNLKYQKIKE 237 (291)
T ss_pred CCeeeeccccchhhh
Confidence 999988666555543
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=2.3e-21 Score=191.95 Aligned_cols=172 Identities=20% Similarity=0.223 Sum_probs=110.5
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCC--------------CCceeEEE--ECCEeccchHhhccce
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT--------------ETNSGYIE--INETRLQDHRMLRKES 109 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~--------------~~~~G~I~--~~g~~~~~~~~~~~~i 109 (612)
++++.+.+.+| +.+|+|||||||||||++|.-..-.... +..++.|. +++.+ ..-.++...
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~--~~~~~~n~~ 90 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNP--GNIQVDNLC 90 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCC--CccccCCce
Confidence 35666677666 8899999999999999998765421000 00111111 11100 001122223
Q ss_pred EEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC-CccccCcccCCCChhhhhHHHHHHHH----
Q psy12625 110 CYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-ISTCKNTLTKHLSGGQKKRLSIALEL---- 183 (612)
Q Consensus 110 ~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerqRv~ia~aL---- 183 (612)
.+++|+.. .+..+++.|.+ ..++ -.+..+..+++||||||||+.+++++
T Consensus 91 ~~~~q~~~~~~~~~~~~e~l-------------------------~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~ 145 (213)
T cd03277 91 QFLPQDRVGEFAKLSPIELL-------------------------VKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQE 145 (213)
T ss_pred EEEchHHHHHHHhCChHhHh-------------------------eeeecCCCccccchhhccccHHHHHHHHHHHHHHh
Confidence 34444431 11222222221 1221 12334567789999999999877554
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCCchHHHhccc--ceeeecCCe
Q psy12625 184 LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-G-TMIICTLHQPSASLLNMAD--YLYVLTEGY 246 (612)
Q Consensus 184 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tvi~~~H~~~~~i~~~~D--~v~~L~~G~ 246 (612)
+.+|+++++||||+|||+.++..+++.|++++++ | .++|++||+... ..+.+| +|++|++|+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCc
Confidence 5899999999999999999999999999999875 5 579999998753 566776 788888886
No 398
>KOG0066|consensus
Probab=99.84 E-value=6.4e-21 Score=196.84 Aligned_cols=177 Identities=25% Similarity=0.332 Sum_probs=139.6
Q ss_pred CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
.+..|-++||+|.|+ +.++++++++|-|.-...+||+||||.||||||++|.|-+.| ..|+..-
T Consensus 583 ~PPvLGlH~VtFgy~---------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P-----~~GE~RK-- 646 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP---------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP-----NDGELRK-- 646 (807)
T ss_pred CCCeeecccccccCC---------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC-----Ccchhhc--
Confidence 345688899999874 568899999999999999999999999999999999999887 3455432
Q ss_pred EeccchHhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc-ccCCCChhh
Q psy12625 97 TRLQDHRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT-LTKHLSGGQ 173 (612)
Q Consensus 97 ~~~~~~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-~~~~LSgGe 173 (612)
..|-+||+..|+.. +-..-|.-|.|.-.. .++ .+.+...|-.+||...+++ .+..|||||
T Consensus 647 -------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQ 709 (807)
T KOG0066|consen 647 -------NHRLRIGWFDQHANEALNGEETPVEYLQRKF------NLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQ 709 (807)
T ss_pred -------cceeeeechhhhhHHhhccccCHHHHHHHhc------CCC----hHHHHHHhhhhhhhhccceEeeeecCCcc
Confidence 22446899888643 333445555543221 122 2345667889999887776 578999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
|-||++|.--+..|+||||||||++||..+...+.+.|++. ...||+++||..
T Consensus 710 KaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR 762 (807)
T KOG0066|consen 710 KARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER 762 (807)
T ss_pred hHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc
Confidence 99999999999999999999999999999999999888775 347889999964
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=3.8e-21 Score=200.34 Aligned_cols=179 Identities=27% Similarity=0.382 Sum_probs=130.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE-------EECCEeccch-Hhh-cc--ceEEEccCCCCCC
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-------EINETRLQDH-RML-RK--ESCYIMQDNLLQE 120 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I-------~~~g~~~~~~-~~~-~~--~i~yv~Q~~~l~~ 120 (612)
..++|++++|+||||-||||-+|+|+|.++|.-+. ..+.- .+.|.++.+. +.+ .. ++..=+|--.+.|
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~-~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGR-YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCC-CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 35799999999999999999999999999884321 11110 1122221110 011 11 1222233211222
Q ss_pred ---CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625 121 ---LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197 (612)
Q Consensus 121 ---~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts 197 (612)
.-||.|-|.-. +.+-+.+++++.++|++..|+.+++|||||-||++||.+++++.++.++|||||
T Consensus 175 k~~KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsS 242 (591)
T COG1245 175 KVVKGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSS 242 (591)
T ss_pred HHhcchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcc
Confidence 12555544311 112357899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
-||...+....+.++++++.+++||++.||.. -+--++|-|.++..
T Consensus 243 yLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 243 YLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred cccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 99999999999999999998999999999974 34556788877753
No 400
>KOG0062|consensus
Probab=99.84 E-value=8.8e-21 Score=200.51 Aligned_cols=199 Identities=24% Similarity=0.271 Sum_probs=157.4
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
+..+++.+|++.|.. +.-+++.+++..++.-+-.+++|+||+||||++|++.|-..| .+|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p--------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~-----~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP--------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP-----TRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCC--------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc-----ccceeeecc-
Confidence 457889999987632 222799999999999999999999999999999999997765 456665443
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhH
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKR 176 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqR 176 (612)
|.+++|-.|...-+-.+.|-+- .+-+....+ . .++.+++-+..+||+. .+...+.+||||||-|
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~pG--~----~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsr 490 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSFPG--K----TEEEIRRHLGSFGLSGELALQSIASLSGGQKSR 490 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHHH-HHHHHhCCC--C----CHHHHHHHHHhcCCCchhhhccccccCCcchhH
Confidence 4568999997654444444433 233333322 2 2455778899999975 4566689999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|++|.....+|.+|+|||||+.||..+-..+.+.|+.. +..||+++||.+ .+...|+.+++.++|++.-
T Consensus 491 vafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 491 VAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999999998888776 246899999964 7889999999999999864
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.84 E-value=1.9e-20 Score=180.24 Aligned_cols=74 Identities=26% Similarity=0.339 Sum_probs=68.6
Q ss_pred CChhhhhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 169 LSGGQKKRLSIALELL----SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 169 LSgGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.++|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999974 4578999999875
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=3.2e-19 Score=216.42 Aligned_cols=126 Identities=26% Similarity=0.286 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhC---CCEEEEeCCCC
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSN---PSIIFLDEPTT 197 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~---p~illlDEPts 197 (612)
|||.|.+.|... ..+-.+.-+.|.++||... ..++..+|||||.||+-||.+|..+ +.+++|||||+
T Consensus 1661 mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1661 TPIEEVAETFPF---------LKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred CCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 677777666421 1123455678899999875 5888889999999999999999876 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChhh
Q psy12625 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLVP 258 (612)
Q Consensus 198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 258 (612)
||++.....+++.|++|.+.|.|||++.||+ ++.+.||.|+-| +.|++++.|+|+++..
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999999999999999999999999999997 467789999999 3479999999998854
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.81 E-value=3.8e-20 Score=181.40 Aligned_cols=136 Identities=17% Similarity=0.196 Sum_probs=104.2
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~ 121 (612)
++.+++|+++. +|++++|+||||||||||+|+|+|... +...|.++.. ..+++|.+.+++.
T Consensus 13 ~~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~----------l~~~G~~v~a-------~~~~~q~~~l~~~ 73 (199)
T cd03283 13 EKRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI----------LAQAGAPVCA-------SSFELPPVKIFTS 73 (199)
T ss_pred CCeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH----------HHHcCCEEec-------CccCcccceEEEe
Confidence 35578888755 579999999999999999999998542 1123444321 1366777889999
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~ 201 (612)
+|+.|++.++... ...+ .+++.++++.+++ .+|+++++||||+|+|+
T Consensus 74 ~~~~d~l~~~~s~------~~~e-~~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 74 IRVSDDLRDGISY------FYAE-LRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccchhccccccCh------HHHH-HHHHHHHHHhccC--------------------------CCCeEEEEecccCCCCH
Confidence 9999998764311 1222 3567888888873 79999999999999999
Q ss_pred HHHHHHH-HHHHHHHhCCCEEEEEecCCc
Q psy12625 202 LNATNLV-KLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 202 ~~~~~i~-~~l~~l~~~g~tvi~~~H~~~ 229 (612)
..+..+. ..++++.+.|.++|++||++.
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 9998775 478888878999999999975
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.3e-19 Score=184.99 Aligned_cols=76 Identities=26% Similarity=0.441 Sum_probs=68.6
Q ss_pred CCChhhhhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 168 HLSGGQKKRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
.||||||||+++|++++. +|+++++||||++||+..+..+.+.|+++.+ +.|+|+++|++. +.+.+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999864 789999999975 468999999998
Q ss_pred CCe
Q psy12625 244 EGY 246 (612)
Q Consensus 244 ~G~ 246 (612)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
No 405
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.7e-19 Score=197.84 Aligned_cols=127 Identities=26% Similarity=0.397 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC---CEEEEeCCC
Q psy12625 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP---SIIFLDEPT 196 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p---~illlDEPt 196 (612)
.|||.|...|.... .+-.+.-+.|..+||.-. ..+....|||||.|||-+|.+|.... -+.+|||||
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPT 853 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 853 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCC
Confidence 37888887776432 123445577888999864 57788899999999999999999877 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChhh
Q psy12625 197 TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLVP 258 (612)
Q Consensus 197 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 258 (612)
+||-.....++++.|.+|.++|.|||++.|+. ++...+|.|+-| ..|+++..|+|+++.+
T Consensus 854 TGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 854 TGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999999999999997 468999999999 3579999999999864
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=2.9e-19 Score=184.26 Aligned_cols=206 Identities=22% Similarity=0.323 Sum_probs=151.0
Q ss_pred EEEEeEEEEEEeecc----------------ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCC-
Q psy12625 21 LLFQDISYSALYYDT----------------HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPK- 83 (612)
Q Consensus 21 l~~~~ls~~~~~~~~----------------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~- 83 (612)
+.++|+++.+..... .........+|+|+|++++||++++|+|+|||||||||++|+|.....
T Consensus 358 ~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ 437 (593)
T COG2401 358 IKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG 437 (593)
T ss_pred cccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhccc
Confidence 667788877654321 011224567999999999999999999999999999999999975421
Q ss_pred --CCCCceeEEEECCEeccchHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc
Q psy12625 84 --KTETNSGYIEINETRLQDHRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST 160 (612)
Q Consensus 84 --~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 160 (612)
...+++|.|.+--.. ..+.+|-+.. -+..-|+.|++.- .. .+-..+.+++++.|+.+
T Consensus 438 ee~y~p~sg~v~vp~nt---------~~a~iPge~Ep~f~~~tilehl~s----~t-------GD~~~AveILnraGlsD 497 (593)
T COG2401 438 EEKYRPDSGKVEVPKNT---------VSALIPGEYEPEFGEVTILEHLRS----KT-------GDLNAAVEILNRAGLSD 497 (593)
T ss_pred ccccCCCCCceeccccc---------hhhccCcccccccCchhHHHHHhh----cc-------CchhHHHHHHHhhccch
Confidence 112467777553221 2344454321 1223455555421 11 11234678999999976
Q ss_pred c--cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhc-c
Q psy12625 161 C--KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNM-A 236 (612)
Q Consensus 161 ~--~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~-~ 236 (612)
. ...+.++||-|||.|+.||.++...|.+++.||-.|.||+.++..+.+-|.++++ .|.|++++||.|+ .+-++ -
T Consensus 498 AvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~P 576 (593)
T COG2401 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRP 576 (593)
T ss_pred hhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCC
Confidence 4 3556789999999999999999999999999999999999999999999999997 5999999999985 34555 5
Q ss_pred cceeeecCCeE
Q psy12625 237 DYLYVLTEGYC 247 (612)
Q Consensus 237 D~v~~L~~G~i 247 (612)
|+++.+.=|.+
T Consensus 577 D~li~vgYg~v 587 (593)
T COG2401 577 DTLILVGYGKV 587 (593)
T ss_pred ceeEEeecccc
Confidence 88888776654
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.80 E-value=7.3e-20 Score=182.35 Aligned_cols=153 Identities=20% Similarity=0.143 Sum_probs=117.7
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceE-EEccCCCCCC
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC-YIMQDNLLQE 120 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~-yv~Q~~~l~~ 120 (612)
.+.+.+|++++.++|++++|.||||+||||||++++-. .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~------------------------~~la~~g~~vpa~~~~~~ 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI------------------------VLMAQIGCFVPCDSADIP 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH------------------------HHHHHhCCCcCcccEEEe
Confidence 45689999999999999999999999999999999721 1112233 5655432211
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH--hhCCCEEEEeCC---
Q psy12625 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL--LSNPSIIFLDEP--- 195 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~p~illlDEP--- 195 (612)
.++++++.+|+++. ...++|.|+++++.+++++ +.+|++++||||
T Consensus 72 ---------------------------~~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ---------------------------IVDCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ---------------------------ccceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 12344555666543 3578999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 196 TTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 196 tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
|++||+.+.... .++.+.+ .|.++|++||+ .++.+++|++..+++|++...++
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999888543 3355554 58899999997 36789999999999999987764
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.78 E-value=5.5e-19 Score=167.70 Aligned_cols=74 Identities=31% Similarity=0.442 Sum_probs=67.7
Q ss_pred CChhhhhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 169 LSGGQKKRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.+++.++|++||++. +.+.+|+++.|..
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 99999999999999987 78999999999999999999999999998766889999999974 4678999999864
No 409
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=1.3e-18 Score=202.82 Aligned_cols=135 Identities=21% Similarity=0.363 Sum_probs=110.2
Q ss_pred CCCCHHHHHHHHHHhccCCCCCH------HHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC--CEE
Q psy12625 120 ELLTVEESLTVAAHLKLGNQYSR------KAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP--SII 190 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p--~il 190 (612)
-.|||.|.+.|...+.......+ ++..+++ +.+..+||.+. .++.+.+|||||+|||.||++|+.+| +++
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 35899999888766532211000 1122233 34778899875 79999999999999999999999986 899
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625 191 FLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV 257 (612)
Q Consensus 191 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 257 (612)
+|||||+|||+.....+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|+++++.
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 999999999999999999999999988999999999975 44 589999999 899999999987763
No 410
>KOG0064|consensus
Probab=99.77 E-value=3e-19 Score=188.67 Aligned_cols=187 Identities=21% Similarity=0.343 Sum_probs=138.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|.++|+-.--+ ....++..++|++++|-.+.|.||||||||+|.|+|+|+-+- ..|...+
T Consensus 481 gI~lenIpvItP---------~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv-----y~g~L~~----- 541 (728)
T KOG0064|consen 481 GIILENIPVITP---------AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV-----YNGLLSI----- 541 (728)
T ss_pred ceEEecCceecc---------CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc-----cCCeeec-----
Confidence 366777755432 345688999999999999999999999999999999999872 2333321
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHH---hccCCCCCHHHHHHHHHHHHHHcCCccccCcccC---------
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH---LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK--------- 167 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~---l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~--------- 167 (612)
. .+..+-|+||.|..- .-|.+|.+-++.. ++ .++++ ++..+.+|+.+.|++...+-.+
T Consensus 542 -P---~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~-~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd 611 (728)
T KOG0064|consen 542 -P---RPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMK-RKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKD 611 (728)
T ss_pred -C---CCcceEeccCCCccC-cCcccceeecCCcHHHHH-hcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHh
Confidence 1 134599999998754 4577777766421 11 01222 3456777888888776655442
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccccee
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLY 240 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 240 (612)
.||||||||+++||.+-++|+.-+|||-||+..+.....+.+..+. .|.+.+-++|+|+. .++-..++
T Consensus 612 ~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl--wk~h~~ll 679 (728)
T KOG0064|consen 612 VLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL--WKYHTHLL 679 (728)
T ss_pred hccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccH--HHHHHHHH
Confidence 4999999999999999999999999999999998888877776544 58999999999974 44434443
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.76 E-value=1.9e-18 Score=201.72 Aligned_cols=135 Identities=24% Similarity=0.385 Sum_probs=112.4
Q ss_pred CCCCHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC--CEE
Q psy12625 120 ELLTVEESLTVAAHLKLGNQYS------RKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP--SII 190 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p--~il 190 (612)
..+||.|.+.|...+..+.... -++..++++ .++.+||.+. .|+.+.+|||||||||.||++|..+| +++
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ll 513 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 513 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 4589999998865543221100 012344554 7889999876 79999999999999999999999997 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625 191 FLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV 257 (612)
Q Consensus 191 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 257 (612)
+|||||+|||+..+..+.+.|++++++|.|||+++|++. .+ ..||+|++| ++|++++.|+++++.
T Consensus 514 ILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 514 VLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 999999999999999999999999888999999999976 44 569999999 899999999988763
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.75 E-value=1.3e-18 Score=171.19 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=106.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHH
Q psy12625 48 DISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEES 127 (612)
Q Consensus 48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 127 (612)
..++++.+|++++|+|||||||||||++|++..-. ...|... ...+..+++..|.. ..++.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~----~~~g~~~---------~~~~~~i~~~dqi~---~~~~~--- 81 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL----AQIGCFV---------PAESASIPLVDRIF---TRIGA--- 81 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH----HHcCCCc---------cccccccCCcCEEE---EEecC---
Confidence 34455678999999999999999999999953210 0112110 00112234433211 11111
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy12625 128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207 (612)
Q Consensus 128 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i 207 (612)
.+..+...+.++++++ |++.+.+++.+|+++++||||+|+|+.....+
T Consensus 82 -------------------------------~d~i~~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 82 -------------------------------EDSISDGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred -------------------------------cccccCCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 1111222345565555 57777888999999999999999999998887
Q ss_pred HH-HHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 208 VK-LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 208 ~~-~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
.. +++.+.+.+.++|++||++ ++.+.+|++..++.|++...++.++.
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 65 5677777789999999985 46788999999999999988876443
No 413
>KOG0066|consensus
Probab=99.75 E-value=6.5e-19 Score=182.10 Aligned_cols=219 Identities=23% Similarity=0.300 Sum_probs=154.6
Q ss_pred CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC---CCCCCC-CceeEE
Q psy12625 17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR---RPKKTE-TNSGYI 92 (612)
Q Consensus 17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~---~p~~~~-~~~G~I 92 (612)
+.+.|.++|.+.+. .++.++.|.|++|-.|..++++||||-||||||+-|+.+- +|.-.. -.+-+|
T Consensus 261 na~DIKiEnF~ISA----------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv 330 (807)
T KOG0066|consen 261 NAMDIKIENFDISA----------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV 330 (807)
T ss_pred hcccceeeeeeeec----------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence 34678888887765 5678999999999999999999999999999999999863 321000 012233
Q ss_pred EECCEeccch--HhhccceEEEccCCC-----CCCCCCHHHHHHH-HHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cC
Q psy12625 93 EINETRLQDH--RMLRKESCYIMQDNL-----LQELLTVEESLTV-AAHLKLGNQYSRKAKESKVDSIADSLSISTC-KN 163 (612)
Q Consensus 93 ~~~g~~~~~~--~~~~~~i~yv~Q~~~-----l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~ 163 (612)
..+..+..+. +.-.++...+-.++. --...|+.|-+.- +..++. +.....+.++..+|.-+|.+.. .+
T Consensus 331 vad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~ 407 (807)
T KOG0066|consen 331 VADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQE 407 (807)
T ss_pred eecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhc
Confidence 3333221110 000111222211111 1234577776642 334442 1223346678899999999765 56
Q ss_pred cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
++...+|||=|-||++||||..+|-+|.|||||+.||..+..-+-+.|+.+. +|.++++||.. .+-..|..|+.|+
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD 483 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLD 483 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhh
Confidence 6777899999999999999999999999999999999999999989998885 59999999976 6788999999999
Q ss_pred CCeEE-EecC
Q psy12625 244 EGYCT-YQGT 252 (612)
Q Consensus 244 ~G~iv-~~G~ 252 (612)
+-++- |.|.
T Consensus 484 ~qkLhyYrGN 493 (807)
T KOG0066|consen 484 NQKLHYYRGN 493 (807)
T ss_pred hhhhhhhcch
Confidence 87764 3343
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=8e-17 Score=165.51 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=62.2
Q ss_pred CCCChhhhhHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc-
Q psy12625 167 KHLSGGQKKRLSIALELL---------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA- 236 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~- 236 (612)
.-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.++++. .+ ++++|+.. .+...+
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~~-~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDLA-DFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCch-hccchhc
Confidence 348999999999999985 7999999999999999999999999998753 34 45555533 455666
Q ss_pred --cceeeecCCeE
Q psy12625 237 --DYLYVLTEGYC 247 (612)
Q Consensus 237 --D~v~~L~~G~i 247 (612)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 68999999985
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.72 E-value=1.4e-17 Score=163.70 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=101.9
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceE-EEccCCCCC
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC-YIMQDNLLQ 119 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~-yv~Q~~~l~ 119 (612)
.++.+.+|++++.++|++++|+||||+||||+++++++..- ..++| +| +...
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~------------------------la~~G~~v---pa~~ 66 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI------------------------MAQIGCFV---PAEY 66 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH------------------------HHHcCCCc---chhh
Confidence 34578999999999999999999999999999999988531 11112 23 2233
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCC
Q psy12625 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgL 199 (612)
..+++.|++ +..++..+..++..+.+|+|++|+ +.+.+++++|+++++|||++|+
T Consensus 67 ~~l~~~d~I------------------------~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt 121 (204)
T cd03282 67 ATLPIFNRL------------------------LSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGT 121 (204)
T ss_pred cCccChhhe------------------------eEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCC
Confidence 444555554 222333344455667899999965 5667789999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhCCCEEEEEecCCc
Q psy12625 200 DYLNATNL-VKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 200 D~~~~~~i-~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
|+.....+ ...++.+.+.|.++|++||+..
T Consensus 122 ~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 122 SSADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 99776665 4567788878999999999964
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.64 E-value=3.4e-16 Score=155.40 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=108.4
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~ 121 (612)
++.+.+|++++.++ ++++|.||||||||||||.+++..-. |+ .|..+ ...+..++++.| +++.
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-------~~---~g~~v---p~~~~~i~~~~~---i~~~ 79 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-------AQ---IGSFV---PASKAEIGVVDR---IFTR 79 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-------hc---cCCee---ccccceecceee---Eecc
Confidence 34588999999887 99999999999999999999875421 11 12221 111345677755 4566
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC---CCC
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP---TTG 198 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP---tsg 198 (612)
+++.|++..+. +.- ..|+++++-+...+.+|+++++||| |++
T Consensus 80 ~~~~~~ls~g~--------s~f---------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 80 IGASDDLAGGR--------STF---------------------------MVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred CCchhhhccCc--------chH---------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 67766654320 000 1122233333334679999999999 888
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 199 LDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 199 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
+|..+. ....++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..+++.
T Consensus 125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 887552 23455555555 88999999995 578899998888889988877766654
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.64 E-value=8.7e-16 Score=156.75 Aligned_cols=141 Identities=21% Similarity=0.258 Sum_probs=98.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc---hHhhccceEEEccCCCCCCCCCHHHHHHHHHH
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD---HRMLRKESCYIMQDNLLQELLTVEESLTVAAH 133 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 133 (612)
.-++|+||||||||||+++|+|.++| .+|+|.++|+++.. ..++.+.+++++|++ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~-----~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~---- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST-----GISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP---- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC-----CCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch----
Confidence 57899999999999999999999986 58999999999742 245556678889865 334455544310
Q ss_pred hccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy12625 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213 (612)
Q Consensus 134 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 213 (612)
+. + |. ..++ ...+|+++++|||++ ...+..+++.
T Consensus 182 --------k~------~---------------------~~---~~~i--~~~~P~villDE~~~------~e~~~~l~~~ 215 (270)
T TIGR02858 182 --------KA------E---------------------GM---MMLI--RSMSPDVIVVDEIGR------EEDVEALLEA 215 (270)
T ss_pred --------HH------H---------------------HH---HHHH--HhCCCCEEEEeCCCc------HHHHHHHHHH
Confidence 00 0 00 2222 336999999999974 3334445555
Q ss_pred HHhCCCEEEEEecCCchH-H-----------HhcccceeeecCCeEEEecCccCh
Q psy12625 214 MAHQGTMIICTLHQPSAS-L-----------LNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 214 l~~~g~tvi~~~H~~~~~-i-----------~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
+ ++|.++|+|+|+++.+ + ..+|||+++|++|+ ..|+++++
T Consensus 216 ~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 216 L-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred H-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 4 4699999999986432 2 26689999999887 66666554
No 418
>KOG0063|consensus
Probab=99.63 E-value=1.8e-15 Score=156.93 Aligned_cols=176 Identities=24% Similarity=0.326 Sum_probs=136.7
Q ss_pred cccccceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC
Q psy12625 43 KDILKDISGVFVSK-----ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL 117 (612)
Q Consensus 43 ~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~ 117 (612)
+.-+.+..+.|+.| |++..+|.||.||||++++++|+++|. ..|+|-. -.++|=||.-.
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd----~~~e~p~------------lnVSykpqkis 412 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD----EGGEIPV------------LNVSYKPQKIS 412 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC----ccCcccc------------cceeccccccC
Confidence 45667788888777 578999999999999999999998873 2333321 23667777654
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625 118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197 (612)
Q Consensus 118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts 197 (612)
--..-||++.+.-- .+. .-...+-+.++++-|.+++..|+.+.+|||||.|||++|..|=..+++.+.|||.+
T Consensus 413 pK~~~tvR~ll~~k--Ir~-----ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsA 485 (592)
T KOG0063|consen 413 PKREGTVRQLLHTK--IRD-----AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSA 485 (592)
T ss_pred ccccchHHHHHHHH--hHh-----hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence 44456888876432 110 11123567889999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhcccceeee
Q psy12625 198 GLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVL 242 (612)
Q Consensus 198 gLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L 242 (612)
-||+..+..--+.+++.- +.++|-.++.||.-- .--++|||++.
T Consensus 486 ylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf 530 (592)
T KOG0063|consen 486 YLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVF 530 (592)
T ss_pred hcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEE
Confidence 999999999999998874 467899999999642 33578888654
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.57 E-value=2.2e-15 Score=146.08 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=66.9
Q ss_pred HHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCchH
Q psy12625 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQ-GTMIICTLHQPSAS 231 (612)
Q Consensus 154 ~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tvi~~~H~~~~~ 231 (612)
..++.++..++..+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ +
T Consensus 47 ~~~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~ 123 (185)
T smart00534 47 TRIGASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--E 123 (185)
T ss_pred EEeCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--H
Confidence 3344455556667789998887444443 34599999999999999999887765 566777764 89999999996 4
Q ss_pred HHhcccceeeecCCeEEE
Q psy12625 232 LLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 232 i~~~~D~v~~L~~G~iv~ 249 (612)
+.+.+|+.--+.++++..
T Consensus 124 l~~~~~~~~~v~~~~~~~ 141 (185)
T smart00534 124 LTKLADEHPGVRNLHMSA 141 (185)
T ss_pred HHHHhhcCccceEEEEEE
Confidence 678887644444454443
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.55 E-value=1.1e-13 Score=147.76 Aligned_cols=76 Identities=25% Similarity=0.385 Sum_probs=64.3
Q ss_pred CCChhhhhHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc--
Q psy12625 168 HLSGGQKKRLSIALELL---------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA-- 236 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~-- 236 (612)
.+|+||+|+++||+.|+ .+|+|+++|||+++||+..+..+++.+.++ +..+++|+|++. .+...+
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~~ 348 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLEN 348 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhcc
Confidence 49999999999999886 799999999999999999999999988764 357888888865 344443
Q ss_pred cceeeecCCeE
Q psy12625 237 DYLYVLTEGYC 247 (612)
Q Consensus 237 D~v~~L~~G~i 247 (612)
++++.+++|++
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 47899999986
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.53 E-value=4e-15 Score=148.13 Aligned_cols=89 Identities=30% Similarity=0.455 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy12625 146 ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI 221 (612)
Q Consensus 146 ~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 221 (612)
.+.+.+.++..++... .+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+ +.-+
T Consensus 120 ~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ 192 (220)
T PF02463_consen 120 LKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQF 192 (220)
T ss_dssp HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEE
T ss_pred cccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 3456667776666543 89999999999997664 57799999999999999999999999999875 4778
Q ss_pred EEEecCCchHHHhcccceeeec
Q psy12625 222 ICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 222 i~~~H~~~~~i~~~~D~v~~L~ 243 (612)
|++||++ ..+..+|+.+.+.
T Consensus 193 ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 193 IITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp EEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccc--ccccccccccccc
Confidence 9999995 5789999887663
No 422
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.53 E-value=1.7e-12 Score=130.69 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=161.4
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CCC--HH----HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhH
Q psy12625 346 RTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI-GDD--AA----RVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEI 418 (612)
Q Consensus 346 R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~-~~~--~~----~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v 418 (612)
|+++...|||.....-+++.++..+++|.++-.. +.+ .. ..+--.|.+.+.....+...... ....+|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~~~--~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSGIS--VIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHhCH
Confidence 6778889999999999999999999999887542 111 11 11122333333333333222111 111233344
Q ss_pred HHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChh
Q psy12625 419 TRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVK 497 (612)
Q Consensus 419 ~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~ 497 (612)
+.|=+.+. .+...|+++|.+.+++..++..+++..+.|++.+.+. ..++.+++..++..++..++|.++++. ++.+
T Consensus 79 ~~~~~~~P-~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKEILVAP-ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 44433333 4678999999999999999999999999988877553 345555566667777889999999998 7788
Q ss_pred HHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChhHHHHHcCCC
Q psy12625 498 NGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMK 577 (612)
Q Consensus 498 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~~~L~~~~~~ 577 (612)
.+..+.+++..+++.+||.+.|.+.+|+|++|+.+++|++|+.|++-....+. . .
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~-~------------------------~ 210 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGV-S------------------------P 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCC-C------------------------c
Confidence 88888999999999999999999999999999999999999999966543321 0 0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHH
Q psy12625 578 NGDYSYDLFFLIVSYILVKIASYL 601 (612)
Q Consensus 578 ~~~~~~~~~il~~~~~~~~~~~~~ 601 (612)
..+.+.++++|+++.+++.+++..
T Consensus 211 ~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 211 TFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Confidence 124566889999988888777654
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.50 E-value=3.8e-14 Score=163.90 Aligned_cols=129 Identities=20% Similarity=0.197 Sum_probs=91.9
Q ss_pred eEEEEeCC-eEEEEECCCCCcHHHHHHHHHCCC-CCCCCCCceeEEEECCEeccchHhhccceEEEccCCC-CCCCCCHH
Q psy12625 49 ISGVFVSK-ELSVILGPSGSGKTKLLDILAGYR-RPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL-LQELLTVE 125 (612)
Q Consensus 49 vs~~i~~G-e~~aI~GpsGsGKSTLL~~l~g~~-~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~-l~~~lTv~ 125 (612)
+|+.+.+| ++++|.||||+|||||||+|+|.. .+ ..| .+||.... .++ +.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a-----q~G-------------------~~Vpa~~~~~~~---~~ 366 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF-----QSG-------------------IPIPANEHSEIP---YF 366 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH-----HhC-------------------CCccCCcccccc---ch
Confidence 78888877 999999999999999999999862 21 112 13333221 111 11
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625 126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205 (612)
Q Consensus 126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~ 205 (612)
+.+. . .... .+......+++|+|+++++.|++.+ .+|+++++|||++|+|+....
T Consensus 367 d~i~----~----~i~~----------------~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 367 EEIF----A----DIGD----------------EQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred hhee----e----ecCh----------------HhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 1110 0 0000 1111223567999999999999876 899999999999999999999
Q ss_pred HH-HHHHHHHHhCCCEEEEEecCCc
Q psy12625 206 NL-VKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 206 ~i-~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
.+ ..+++.+++.|.++|++||+..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHH
Confidence 99 5788888888999999999964
No 424
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=1.6e-13 Score=135.99 Aligned_cols=130 Identities=19% Similarity=0.155 Sum_probs=86.5
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC--CCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC-
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAG--YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE- 120 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g--~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~- 120 (612)
.+-+|+++.=..+..++|.||||+|||||||.++. ... ..|...... .-.++|..|....+.
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la------~~G~~v~a~---------~~~~~~~d~i~~~l~~ 81 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA------HIGSFVPAD---------SATIGLVDKIFTRMSS 81 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH------hCCCeeEcC---------CcEEeeeeeeeeeeCC
Confidence 34456664322238999999999999999999984 222 234332211 123667666432111
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCC--hhhhhHHHHHHHHhhCCCEEEEeCCCCC
Q psy12625 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLS--GGQKKRLSIALELLSNPSIIFLDEPTTG 198 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS--gGerqRv~ia~aL~~~p~illlDEPtsg 198 (612)
..++. .++| .-|-||++++++++.+|+++++|||++|
T Consensus 82 ~~si~-----------------------------------------~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~g 120 (213)
T cd03281 82 RESVS-----------------------------------------SGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKG 120 (213)
T ss_pred ccChh-----------------------------------------hccchHHHHHHHHHHHHHhCCCCcEEEeccccCC
Confidence 01111 1122 3567899999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhC---CCEEEEEecCCc
Q psy12625 199 LDYLNATNL-VKLLRDMAHQ---GTMIICTLHQPS 229 (612)
Q Consensus 199 LD~~~~~~i-~~~l~~l~~~---g~tvi~~~H~~~ 229 (612)
+|+.....+ ...++++.+. +.++|++||++.
T Consensus 121 td~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 121 TDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 999765444 5688888764 358999999974
No 425
>KOG0063|consensus
Probab=99.48 E-value=6.1e-14 Score=145.72 Aligned_cols=189 Identities=21% Similarity=0.310 Sum_probs=124.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHH
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAA 132 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 132 (612)
-+||++.+++|.||-||||-|++++|..+|.-+..+.+-.+-++.......++....-=+- ++.+-......+...+..
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~l-e~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL-EDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhc-cccccCcCChHHHHHHHH
Confidence 3589999999999999999999999999875332222221111100000001100000000 011111011111111111
Q ss_pred Hhc--cCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy12625 133 HLK--LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210 (612)
Q Consensus 133 ~l~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~ 210 (612)
..+ .+....+...++..+++++.+.|.+..++-+.+|||||-||.+||.+-+.+.++.++|||.+-||...+..-...
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 111 000111222334677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 211 LRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 211 l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
++.+.....-||++.||.+ -+--+.|-+..|.
T Consensus 256 IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLY 287 (592)
T KOG0063|consen 256 IRSLINPDRYIIVVEHDLS-VLDYLSDFICCLY 287 (592)
T ss_pred HHHhhCCCCeEEEEEeech-HHHhhhcceeEEe
Confidence 9999988889999999986 3445678777775
No 426
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.45 E-value=2.1e-12 Score=127.43 Aligned_cols=149 Identities=12% Similarity=0.029 Sum_probs=121.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhHHHHHHHHH
Q psy12625 428 FSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLT 506 (612)
Q Consensus 428 Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~a~~~~~~~ 506 (612)
-+...++++|.+..++..+++++++..+.|++.|++++ .+..+++.+++..++..++|.++++. .+.. .....+.
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~--~~~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVG--RFLALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcch--HHHHHHH
Confidence 35567899999999999999999999999999999865 56777888888999999999999998 5443 3334445
Q ss_pred HHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChhHHHHHcCCCCCCchhhHH
Q psy12625 507 LLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLF 586 (612)
Q Consensus 507 ~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~~~L~~~~~~~~~~~~~~~ 586 (612)
+.+.+.++|.+.|.+.+|.|++|+.+++|++|+.+++-...++++ ....|.+++
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~--------------------------~~~~~~~~~ 186 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN--------------------------DGTLWQAVA 186 (208)
T ss_pred HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc--------------------------HHHHHHHHH
Confidence 567777899999999999999999999999999999976655310 124578899
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy12625 587 FLIVSYILVKIASYLVLYFQ 606 (612)
Q Consensus 587 il~~~~~~~~~~~~~~L~~~ 606 (612)
+|+++.+++.++++...|++
T Consensus 187 ~L~~~~~v~~~la~~~~~~~ 206 (208)
T TIGR03062 187 VLLLILVVFLALSLLSARRK 206 (208)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999998888877776533
No 427
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.42 E-value=3.7e-11 Score=122.39 Aligned_cols=237 Identities=13% Similarity=0.029 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhcCCCCCHHH--HHH--HHHHHHHHHHHHHHHH-HHHhhhccc
Q psy12625 340 FCILLKRTLIKCFRD-RFLTKVRLSLHLIIGSFLGIMYRGIGDDAAR--VHN--NLSLLFFSTMFLMFTA-LSSMIITYP 413 (612)
Q Consensus 340 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~--~~~--~~g~lff~~~~~~~~~-~~~~~~~f~ 413 (612)
...+.+|+++..+|+ |......+++.++.-+++|..+-....+..+ ..+ --|++-+++++.++.. ....+..+
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~- 85 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIYATFARM- 85 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345669999999999 9999999999999888888887543111111 111 1133333233222111 11111111
Q ss_pred chhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Q psy12625 414 LEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI 493 (612)
Q Consensus 414 ~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~ 493 (612)
.|+..++|-+... -++..+.+||++.+.-..++..++...+.+++ |..+. ......+..+++..++..++|.++|++
T Consensus 86 r~~g~~~~l~~~P-v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~ 162 (253)
T TIGR01291 86 RVTRTWEAMLYTP-ITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLVAAL 162 (253)
T ss_pred HHcccHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333444444344 27889999999999777777766655554443 44333 334444555666777888999999999
Q ss_pred -CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChhHHHH
Q psy12625 494 -LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLD 572 (612)
Q Consensus 494 -~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~~~L~ 572 (612)
++.+.+..+..++..|++.+||.+.|.+.+|.|++|+.+++|++|+.|++=...++.
T Consensus 163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~---------------------- 220 (253)
T TIGR01291 163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGG---------------------- 220 (253)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCC----------------------
Confidence 788888888899999999999999999999999999999999999999865443321
Q ss_pred HcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy12625 573 ALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQ 606 (612)
Q Consensus 573 ~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~ 606 (612)
+..+.|.++++++++.+++..++....|++
T Consensus 221 ----~~~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 221 ----PGTQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011235678889888888888777766654
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.41 E-value=4.7e-13 Score=132.75 Aligned_cols=45 Identities=24% Similarity=0.306 Sum_probs=43.1
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPT-----TGLDYLNATNLVKLLRDMAH 216 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPt-----sgLD~~~~~~i~~~l~~l~~ 216 (612)
-|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999975
No 429
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.40 E-value=3.8e-11 Score=120.60 Aligned_cols=223 Identities=11% Similarity=0.082 Sum_probs=145.7
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHhhccCCCcch
Q psy12625 352 FRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVH-NNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSL 430 (612)
Q Consensus 352 ~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~-~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~ 430 (612)
+|||.....-+.+.+++-++.+.+|-+... ....+ --.|.+-+..+........ .......|...+.|=+... .+.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~er~~G~l~rl~~~P-~~~ 78 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT-HNRGATFIPVLMALAAISTAFTGQA-IAVARDRRYGALKRLGATP-LPR 78 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccC-CcchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHhcCC-CcH
Confidence 699999998899888887888777765211 11111 1222222222222222111 1112223445566666655 488
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-C---ChhHHHHHHHHH
Q psy12625 431 KAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-L---DVKNGVIFGPLT 506 (612)
Q Consensus 431 ~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~---~~~~a~~~~~~~ 506 (612)
..|+++|.+..++..++...++ .+++++.|.+..... ...++...+....+.+++.+++++ . +.+.+..++++.
T Consensus 79 ~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 156 (232)
T TIGR00025 79 LGILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLV 156 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 9999999998888877665555 455677788865433 233444445556666677776666 3 344457788888
Q ss_pred HHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChhHHHHHcCCCCCCchhhHH
Q psy12625 507 LLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLF 586 (612)
Q Consensus 507 ~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~~~L~~~~~~~~~~~~~~~ 586 (612)
.+|++++||.+.|.+.+|.|++|+.+++|++|+.+++-....+ . -+....|.+++
T Consensus 157 ~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~--~-----------------------~~~~~~~~~~~ 211 (232)
T TIGR00025 157 WFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV--S-----------------------VDTFGAVRDLV 211 (232)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC--C-----------------------CChhhHHHHHH
Confidence 9999999999999999999999999999999999987543221 1 01234577888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12625 587 FLIVSYILVKIASYLVLY 604 (612)
Q Consensus 587 il~~~~~~~~~~~~~~L~ 604 (612)
+++++.+++..++....+
T Consensus 212 ~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 212 VVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888887776666554
No 430
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.40 E-value=3.1e-13 Score=117.94 Aligned_cols=75 Identities=15% Similarity=-0.038 Sum_probs=61.5
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCCCCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNLLQE 120 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~l~~ 120 (612)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.++... ...++..++++|+ ++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf- 67 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL- 67 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-
Confidence 46899999999999999999999999999999985 37899999986433 3345667777777 33
Q ss_pred CCCHHHHHHHH
Q psy12625 121 LLTVEESLTVA 131 (612)
Q Consensus 121 ~lTv~e~l~~~ 131 (612)
..|++|||.++
T Consensus 68 ~~ti~~Ni~~~ 78 (107)
T cd00820 68 EIRLRLNIFLI 78 (107)
T ss_pred hhhHHhhceee
Confidence 36999999873
No 431
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.38 E-value=2.4e-12 Score=128.03 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=88.4
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC-CCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY-RRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~-~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~ 121 (612)
+.+.+|+++.+++|++++|.||||+||||+++++++. ..+ ..|...... .. ....+.+...-+...|.+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la-----~~G~~v~a~-~~-~~~~~~~i~~~~~~~d~~~~~ 90 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA-----QIGSFVPAS-SA-TLSIFDSVLTRMGASDSIQHG 90 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH-----hCCCEEEcC-ce-EEeccceEEEEecCccccccc
Confidence 5689999999999999999999999999999999994 332 345433221 10 001111111222222221111
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~ 201 (612)
++ .| ..|-+|++-...-+++|+++|+|||.+|.|+
T Consensus 91 ~S-----tF----------------------------------------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~ 125 (222)
T cd03287 91 MS-----TF----------------------------------------MVELSETSHILSNCTSRSLVILDELGRGTST 125 (222)
T ss_pred cc-----hH----------------------------------------HHHHHHHHHHHHhCCCCeEEEEccCCCCCCh
Confidence 11 11 1233333333344678999999999999987
Q ss_pred HHHHHH-HHHHHHHHhC-CCEEEEEecCCchHHHhcc
Q psy12625 202 LNATNL-VKLLRDMAHQ-GTMIICTLHQPSASLLNMA 236 (612)
Q Consensus 202 ~~~~~i-~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~ 236 (612)
.....+ ...++.+.+. +.++|++||++. +.++.
T Consensus 126 ~d~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~ 160 (222)
T cd03287 126 HDGIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL 160 (222)
T ss_pred hhHHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence 777764 5677777775 889999999974 34444
No 432
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.37 E-value=2.1e-10 Score=116.71 Aligned_cols=236 Identities=14% Similarity=0.115 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CC------C---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12625 337 LSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI-GD------D---AARVHNNLSLLFFSTMFLMFTALS 406 (612)
Q Consensus 337 ~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~-~~------~---~~~~~~~~g~lff~~~~~~~~~~~ 406 (612)
+++++.+++|.++...|||.....-+++.++.-+++|.+|-.. +. + .-...--.|.+-+.+.+..+.+..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~ 80 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL 80 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999988442 11 1 111222234433333333322211
Q ss_pred HhhhcccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHH
Q psy12625 407 SMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGM 486 (612)
Q Consensus 407 ~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~ 486 (612)
. ....+|+..+.+=+... .+...+.+++++...-..++..+++.++.+. .|.+.+...+......+++..++..++
T Consensus 81 ~--~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 81 S--MVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred H--hHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 1 12223333444444444 4778899999999987777766555444433 366555444444445556677778899
Q ss_pred HhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCC---cccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCcc
Q psy12625 487 GVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDS---PDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYC 562 (612)
Q Consensus 487 g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C 562 (612)
|.++|++ ++.+.+..+.++++.+++..||.+.|.+.+ |.|++|+.+++|+.|..|++=..-++ +
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~g--~---------- 224 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALYG--Q---------- 224 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHhC--C----------
Confidence 9999998 777778888888899999999999998766 88999999999999999877533221 0
Q ss_pred ccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12625 563 HFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYF 605 (612)
Q Consensus 563 ~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~ 605 (612)
.-|..+.+++++.+++..++....|+
T Consensus 225 -----------------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 225 -----------------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 01556677777777777776665543
No 433
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.36 E-value=7.2e-13 Score=153.81 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=67.5
Q ss_pred cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhccccee
Q psy12625 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMIICTLHQPSASLLNMADYLY 240 (612)
Q Consensus 162 ~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 240 (612)
.....+.+|+|++|++.|++++ ++|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++. .....+|+..
T Consensus 384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~ 461 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREG 461 (782)
T ss_pred hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCC
Confidence 3445678999999999999998 8999999999999999999988864 67777778899999999964 2333445444
Q ss_pred eecCCeEEEe
Q psy12625 241 VLTEGYCTYQ 250 (612)
Q Consensus 241 ~L~~G~iv~~ 250 (612)
+ .++.+.+.
T Consensus 462 v-~~~~~~~d 470 (782)
T PRK00409 462 V-ENASVEFD 470 (782)
T ss_pred e-EEEEEEEe
Confidence 4 35666553
No 434
>PRK14079 recF recombination protein F; Provisional
Probab=99.32 E-value=2.8e-11 Score=128.83 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=62.5
Q ss_pred CChhhhhHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccce
Q psy12625 169 LSGGQKKRLSIALELL---------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL 239 (612)
Q Consensus 169 LSgGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v 239 (612)
+|+||+|++++|..|+ .+|++++||||+++||...+..+.+.|.+.. .++|.+++.+ ..+|++
T Consensus 264 ~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~~ 335 (349)
T PRK14079 264 ASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAALT 335 (349)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCceE
Confidence 8999999999999999 8999999999999999999999998886532 3444444432 578999
Q ss_pred eeecCCeEEEecC
Q psy12625 240 YVLTEGYCTYQGT 252 (612)
Q Consensus 240 ~~L~~G~iv~~G~ 252 (612)
+.+.+|++.-..|
T Consensus 336 ~~~~~~~~~~~~~ 348 (349)
T PRK14079 336 LRIEAGVFTPEAP 348 (349)
T ss_pred EEEeccEecCCCC
Confidence 9999998754443
No 435
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.31 E-value=1.4e-11 Score=133.67 Aligned_cols=176 Identities=15% Similarity=0.183 Sum_probs=114.2
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch----------HhhccceEE
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH----------RMLRKESCY 111 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~----------~~~~~~i~y 111 (612)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..++ ..|.|.+.|++-.+. ..+++.+.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-----~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~v 218 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-----DLNVIALIGERGREVREFIERDLGPEGLKRSIVV 218 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-----CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEE
Confidence 35689999 99999999999999999999999999999875 579999865442211 235678899
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH-HHHhhCCCEE
Q psy12625 112 IMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA-LELLSNPSII 190 (612)
Q Consensus 112 v~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia-~aL~~~p~il 190 (612)
+.+.+.- +.+-..-+ .. . -.+-|.+..-|-+-.. ...+++ |.+-| |++. +
T Consensus 219 v~~~~~~-----~~~r~~~~-~~----------a-~~iAEyfr~~g~~Vll--~~Dslt-----r~A~A~rEis-----l 269 (438)
T PRK07721 219 VATSDQP-----ALMRIKGA-YT----------A-TAIAEYFRDQGLNVML--MMDSVT-----RVAMAQREIG-----L 269 (438)
T ss_pred EECCCCC-----HHHHHHHH-HH----------H-HHHHHHHHHCCCcEEE--EEeChH-----HHHHHHHHHH-----H
Confidence 9765431 11111000 00 0 0111222222211000 001111 11111 1111 1
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 191 FLDEP--TTGLDYLNATNLVKLLRDMAH--QGT-----MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 191 llDEP--tsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
.+.|| |+|+|+.....+.++++++.+ +|. ||++.+||.++ .+||++..+.+|+++..++..+
T Consensus 270 ~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 270 AVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred hcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 12343 789999999999999999974 675 99999999873 7899999999999999997764
No 436
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.30 E-value=4e-12 Score=144.13 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=69.8
Q ss_pred ccCCCChhhhhHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy12625 165 LTKHLSGGQKKRLSIALELL----------SNPSIIFLDEPT-TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL 233 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~----------~~p~illlDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~ 233 (612)
.+.+||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ +|.+||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 44689999999999999987 599999999998 789999999999999998 5889999999964 46
Q ss_pred hcccceeeecC-CeE
Q psy12625 234 NMADYLYVLTE-GYC 247 (612)
Q Consensus 234 ~~~D~v~~L~~-G~i 247 (612)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 543
No 437
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.30 E-value=4.2e-12 Score=143.50 Aligned_cols=76 Identities=22% Similarity=0.387 Sum_probs=69.4
Q ss_pred CCChhhhhHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 168 HLSGGQKKRLSIALELLSN----PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~----p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||++. +...||++++|+
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l~ 516 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKVE 516 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEEE
Confidence 4899999999999999985 699999999999999999999999999975 899999999975 457899999998
Q ss_pred CCe
Q psy12625 244 EGY 246 (612)
Q Consensus 244 ~G~ 246 (612)
+|.
T Consensus 517 k~~ 519 (563)
T TIGR00634 517 KEG 519 (563)
T ss_pred Ecc
Confidence 864
No 438
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=6.1e-12 Score=151.92 Aligned_cols=87 Identities=22% Similarity=0.199 Sum_probs=78.5
Q ss_pred CccccCcccCCCChhhhhHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q psy12625 158 ISTCKNTLTKHLSGGQKKRLSIALELLS----------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQ 227 (612)
Q Consensus 158 L~~~~~~~~~~LSgGerqRv~ia~aL~~----------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 227 (612)
+....++.+++|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|+++||+
T Consensus 940 ~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618 940 AYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred CCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 3445567889999999999999999986 799999999999999999999999999998889999999999
Q ss_pred CchHHHhcccceeeecCC
Q psy12625 228 PSASLLNMADYLYVLTEG 245 (612)
Q Consensus 228 ~~~~i~~~~D~v~~L~~G 245 (612)
+. ....++|+|.|++.|
T Consensus 1020 ~~-~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1020 PE-FRERIPHRILVKKTN 1036 (1042)
T ss_pred HH-HHHhhCCEEEEEECC
Confidence 76 578899999999754
No 439
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.29 E-value=4e-12 Score=128.47 Aligned_cols=181 Identities=16% Similarity=0.182 Sum_probs=105.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE--CCEeccchHhhccc---eEEEccCCCCCCCC---
Q psy12625 51 GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--NETRLQDHRMLRKE---SCYIMQDNLLQELL--- 122 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~--~g~~~~~~~~~~~~---i~yv~Q~~~l~~~l--- 122 (612)
+.+.+||.++|+||+|+|||||++.|++..... .....+.+ -+++-.+...+.+. +-.+.+-+. .+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~---~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN---HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccc---cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHH
Confidence 378899999999999999999999999987632 11223222 22221122222221 222333222 1100
Q ss_pred CHHHHHHHHHHhc-cCCCC--CHHHHHHHHHHHHHHcCCccccCcccCCCChhh--------hhHHHHHHHHhhCCCEEE
Q psy12625 123 TVEESLTVAAHLK-LGNQY--SRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ--------KKRLSIALELLSNPSIIF 191 (612)
Q Consensus 123 Tv~e~l~~~~~l~-~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe--------rqRv~ia~aL~~~p~ill 191 (612)
..+.-+..+...+ .+.+. --++ -.+..+..+++++ .....+|||| +||+++||++..+++|.+
T Consensus 87 ~~~~~~~~a~~~~~~G~~vll~iDe-i~r~a~a~~ev~~-----~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 87 VAEMVLEKAKRLVEHGKDVVILLDS-ITRLARAYNTVVP-----PSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEC-HHHhhhhhhhccc-----cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 0111111111111 00000 0000 0111111222221 1223589999 999999999999999999
Q ss_pred EeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 192 LDEPTTGLDYLNATN-LVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 192 lDEPtsgLD~~~~~~-i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
+ ||+.+|+.+... ++ +.++...+.|.|+.+|+... ...+|.|.+|+.|..
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 9 999999655544 54 55555567899999999753 689999999999986
No 440
>PRK10869 recombination and repair protein; Provisional
Probab=99.26 E-value=1.1e-11 Score=139.04 Aligned_cols=75 Identities=23% Similarity=0.487 Sum_probs=68.8
Q ss_pred CChhhhhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 169 LSGGQKKRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +...+|+.+.+.+
T Consensus 431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~k 507 (553)
T PRK10869 431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVSK 507 (553)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence 79999999999999997 5899999999999999999999999999975 689999999985 5689999999987
Q ss_pred Ce
Q psy12625 245 GY 246 (612)
Q Consensus 245 G~ 246 (612)
+.
T Consensus 508 ~~ 509 (553)
T PRK10869 508 ET 509 (553)
T ss_pred cc
Confidence 53
No 441
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.26 E-value=4e-11 Score=133.86 Aligned_cols=136 Identities=23% Similarity=0.374 Sum_probs=105.8
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHH------HHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhC--CCEE
Q psy12625 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI------ADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSN--PSII 190 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~--p~il 190 (612)
..+++.|.+.|...+.+... .....+..+.++ |..+||... .++..+.|||||.||+-+|..+=++ -=+.
T Consensus 427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY 505 (935)
T COG0178 427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 505 (935)
T ss_pred hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence 34777888888766653211 111112222333 444678764 5888899999999999999998665 2467
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChhh
Q psy12625 191 FLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLVP 258 (612)
Q Consensus 191 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 258 (612)
+||||+-||-+..-.++++.|++|++.|-|+|++.||+ +....+|+|+-| ..|+|+++|+++++..
T Consensus 506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 99999999999999999999999999999999999996 467899999998 4589999999998753
No 442
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.25 E-value=7.1e-11 Score=114.11 Aligned_cols=89 Identities=10% Similarity=0.022 Sum_probs=72.9
Q ss_pred HcCCccccCcccCCCChhhhh------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEe
Q psy12625 155 SLSISTCKNTLTKHLSGGQKK------RLSIALELLSNPSIIFLDEPTTGLD---YLNATNLVKLLRDMAHQGTMIICTL 225 (612)
Q Consensus 155 ~lgL~~~~~~~~~~LSgGerq------Rv~ia~aL~~~p~illlDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~~~ 225 (612)
..|+....+..+..+|+||+| +.........+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++
T Consensus 58 ~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~ 137 (187)
T cd01124 58 DEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTS 137 (187)
T ss_pred hcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 445556677888899999998 4555555667999999999999999 8888889999999988899999999
Q ss_pred cCCch--------HHHhcccceeeec
Q psy12625 226 HQPSA--------SLLNMADYLYVLT 243 (612)
Q Consensus 226 H~~~~--------~i~~~~D~v~~L~ 243 (612)
|+... .+..++|.++.|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 138 EQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccccCCCcccCcCceeEeeeEEEEEE
Confidence 98653 1567889998886
No 443
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=1.3e-11 Score=122.48 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=87.5
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~ 121 (612)
++.+-+|+++..++|++++|.||||+||||+++++++..--. ..| ..+.- + ...++++ +.++..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la----~~G------~~vpa-~--~~~i~~~---~~i~~~ 79 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA----QMG------MDVPA-K--SMRLSLV---DRIFTR 79 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH----HcC------CccCc-c--ccEeccc---cEEEEe
Confidence 456889999999999999999999999999999998853210 001 11100 0 0111111 112221
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCCh--hhhhHHHHHHHHhhCCCEEEEeCCCCCC
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG--GQKKRLSIALELLSNPSIIFLDEPTTGL 199 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg--GerqRv~ia~aL~~~p~illlDEPtsgL 199 (612)
+...|++. .++|- .|-+|++-....+++|+++++|||.+|+
T Consensus 80 ~~~~d~~~-------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 80 IGARDDIM-------------------------------------KGESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cCcccccc-------------------------------------cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 11222221 01110 2334444444446789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhC-CCEEEEEecCCc
Q psy12625 200 DYLNATNLVKL-LRDMAHQ-GTMIICTLHQPS 229 (612)
Q Consensus 200 D~~~~~~i~~~-l~~l~~~-g~tvi~~~H~~~ 229 (612)
|+.....+... ++.+.+. +.++|++||++.
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 99999999888 7888775 899999999964
No 444
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.24 E-value=5.2e-11 Score=119.50 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=89.1
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHH
Q psy12625 52 VFVSKELSVILGPSGSGKTKL-LDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTV 130 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTL-L~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 130 (612)
-+++|+++.|.|||||||||| ++.+++..++. .. +.|+..+ .|..+.+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-----~~------------------~~yi~~e------~~~~~~~~~ 70 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-----YS------------------VSYVSTQ------LTTTEFIKQ 70 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-----Cc------------------EEEEeCC------CCHHHHHHH
Confidence 389999999999999999999 79999875420 11 2333321 233344433
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCCC----CHH
Q psy12625 131 AAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTGL----DYL 202 (612)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsgL----D~~ 202 (612)
...+.. .. ++.... |.-...+-. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 71 ~~~~g~--~~---------~~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 71 MMSLGY--DI---------NKKLIS-GKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred HHHhCC--ch---------HHHhhc-CcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 322211 10 011110 100011111 235666655544444333 369999999999999 888
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchH------HHhcccceeeec
Q psy12625 203 NATNLVKLLRDMAHQGTMIICTLHQPSAS------LLNMADYLYVLT 243 (612)
Q Consensus 203 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~------i~~~~D~v~~L~ 243 (612)
....+.+.+++++++|.|+++++|+.... +..++|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 88999999999988888887776643210 123456666664
No 445
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.23 E-value=8e-12 Score=124.72 Aligned_cols=63 Identities=35% Similarity=0.530 Sum_probs=54.0
Q ss_pred CCCChhhhhHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 167 KHLSGGQKKRLSIALELLSNP---SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
..+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++++.+..+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 357999999999999988777 899999999999999999999999888776889999999974
No 446
>PRK13695 putative NTPase; Provisional
Probab=99.21 E-value=2.4e-11 Score=116.54 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=65.8
Q ss_pred cccCCCChhhhhHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee
Q psy12625 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEP--TTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241 (612)
Q Consensus 164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEP--tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 241 (612)
+.+..+||+|+-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|.++|+++|+. .+...+|++..
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~ 147 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKS 147 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhc
Confidence 34557999999999999999999999999995 44444 345666666667789999999984 35678999999
Q ss_pred ecCCeEEEe
Q psy12625 242 LTEGYCTYQ 250 (612)
Q Consensus 242 L~~G~iv~~ 250 (612)
+.+|++...
T Consensus 148 ~~~~~i~~~ 156 (174)
T PRK13695 148 RPGGRVYEL 156 (174)
T ss_pred cCCcEEEEE
Confidence 999998765
No 447
>PRK15066 inner membrane transport permease; Provisional
Probab=99.21 E-value=6.4e-09 Score=106.20 Aligned_cols=240 Identities=10% Similarity=0.111 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHhcCC-CC--C-HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12625 337 LSQFCILLKRTLIKCFRDRFL-TKVRLSLHLIIGSFLGIMYRGI-GD--D-AARVHNNLSLLFFSTMFLMFTALSSMIIT 411 (612)
Q Consensus 337 ~~Q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~al~~G~~f~~~-~~--~-~~~~~~~~g~lff~~~~~~~~~~~~~~~~ 411 (612)
|+-++.+.+|.++...||+.. ...-+++.++..+++|.++-.. +. + ..-..--.|.+-+.....+.+.....
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~~~~--- 83 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNVASS--- 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 667889999999999999854 3334445556666667665321 11 1 11111222444333333333322222
Q ss_pred ccchh--hHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhH
Q psy12625 412 YPLEF--EITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVL 489 (612)
Q Consensus 412 f~~er--~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~ 489 (612)
+..++ ...+|=+.+. .+...+.+++++...-..++..++..++.+...|.+.. ....+....++........|.+
T Consensus 84 i~~~~~~~~~~~l~vtp-~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 84 FFSAKFQRNIEELLVSP-VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHhhhHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 1111212223 47788999999988767666665555555544466543 2222333333333433445777
Q ss_pred HHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChh
Q psy12625 490 VGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPA 568 (612)
Q Consensus 490 i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~ 568 (612)
+|.. .+.+....+.++++.|++..||.+.|.+++|.|++|+.+++|++|..|++=..-++.
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~------------------ 222 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI------------------ 222 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC------------------
Confidence 8877 677777788889999999999999999999999999999999999999875432220
Q ss_pred HHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12625 569 KFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQIN 608 (612)
Q Consensus 569 ~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~~ 608 (612)
.....|.++++++++.+++..++....|+..+
T Consensus 223 --------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 223 --------SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11234778899999999888888877764433
No 448
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.15 E-value=3e-10 Score=106.96 Aligned_cols=157 Identities=22% Similarity=0.357 Sum_probs=92.9
Q ss_pred ccccce--EEEEeCCeEEEEECCCCCcHHHHHHHHHCCC---CCCCCCCceeEEEECCEeccch-Hh-h--ccceEEEcc
Q psy12625 44 DILKDI--SGVFVSKELSVILGPSGSGKTKLLDILAGYR---RPKKTETNSGYIEINETRLQDH-RM-L--RKESCYIMQ 114 (612)
Q Consensus 44 ~iL~~v--s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~---~p~~~~~~~G~I~~~g~~~~~~-~~-~--~~~i~yv~Q 114 (612)
++++++ .+++++- ++.|+|.||+||||||..|+-.. ....+...+|++...+.++.+. +. + +...||...
T Consensus 24 Pa~r~l~~~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlR 102 (233)
T COG3910 24 PAFRHLEERLEFRAP-ITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLR 102 (233)
T ss_pred hHHHhhhhhccccCc-eEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEe
Confidence 344444 3556554 99999999999999999987543 2211112234443333222111 00 0 112333222
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeC
Q psy12625 115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194 (612)
Q Consensus 115 ~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDE 194 (612)
-. |+ ..++. .++++...-+ ........-|-||-=---+.+. ..+.-+.+|||
T Consensus 103 AE------s~---yn~as---------------~~De~~~e~~---~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDE 154 (233)
T COG3910 103 AE------SF---YNVAS---------------YLDEADGEAN---YGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDE 154 (233)
T ss_pred hh------HH---HHHHH---------------HHHhhhhhcc---cCCcchhhhccchHHHHHHHHH-hccCceEEecC
Confidence 11 11 11111 1122211111 2233344578888654444443 46778999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 195 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
|-++|.+.-+.+++..|+++++.|..+|+.||.|-
T Consensus 155 PEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 155 PEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 99999999999999999999999999999999984
No 449
>PRK03918 chromosome segregation protein; Provisional
Probab=99.13 E-value=9.1e-11 Score=139.99 Aligned_cols=79 Identities=30% Similarity=0.433 Sum_probs=69.6
Q ss_pred cccCCCChhhhh------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc
Q psy12625 164 TLTKHLSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD 237 (612)
Q Consensus 164 ~~~~~LSgGerq------Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D 237 (612)
.+++.||||||+ |+++|++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++. +...||
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCC
Confidence 456679999999 555666788999999999999999999999999999998777889999999963 578999
Q ss_pred ceeeecC
Q psy12625 238 YLYVLTE 244 (612)
Q Consensus 238 ~v~~L~~ 244 (612)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999973
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.12 E-value=2e-10 Score=120.40 Aligned_cols=143 Identities=19% Similarity=0.134 Sum_probs=95.4
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchH-hhccceEEEccCCCCCCCCCHHHH
Q psy12625 49 ISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR-MLRKESCYIMQDNLLQELLTVEES 127 (612)
Q Consensus 49 vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~-~~~~~i~yv~Q~~~l~~~lTv~e~ 127 (612)
+++.+++|+.++|.||+|||||||+++|++..++ ..|.+.++... +.. ..+..+.++.+...-
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~-----~~~iv~ied~~--El~~~~~~~~~l~~~~~~~--------- 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK-----DERIITIEDTR--EIFLPHPNYVHLFYSKGGQ--------- 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc-----cccEEEEcCcc--ccCCCCCCEEEEEecCCCC---------
Confidence 4567889999999999999999999999999875 35666664321 110 001222222211000
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy12625 128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207 (612)
Q Consensus 128 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i 207 (612)
+ +++-...-.+..+|-.+|+++++|||.+ .+.
T Consensus 201 ----------------------------------------~-~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~ 232 (308)
T TIGR02788 201 ----------------------------------------G-LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEA 232 (308)
T ss_pred ----------------------------------------C-cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence 0 0001111234556778999999999996 345
Q ss_pred HHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 208 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
.+.++.+...+.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 233 ~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 6777776644446799999986 46779999999999988888777654
No 451
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.12 E-value=4.8e-11 Score=143.65 Aligned_cols=82 Identities=24% Similarity=0.200 Sum_probs=70.5
Q ss_pred cCcccCCCChhhhhHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy12625 162 KNTLTKHLSGGQKKRLSIALELLS--------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL 233 (612)
Q Consensus 162 ~~~~~~~LSgGerqRv~ia~aL~~--------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~ 233 (612)
.++.+++|||||++|++||++|+. +|++||+||||++||+.+...+++.|..+++.|++|+++||... ..-
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~ 1021 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKE 1021 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHH
Confidence 457789999999999999999996 89999999999999999999999999999989999999999753 334
Q ss_pred hcccceeeecC
Q psy12625 234 NMADYLYVLTE 244 (612)
Q Consensus 234 ~~~D~v~~L~~ 244 (612)
++-.+|.|-..
T Consensus 1022 ~i~~qi~V~k~ 1032 (1047)
T PRK10246 1022 RIPVQIKVKKI 1032 (1047)
T ss_pred hccceEEEEEC
Confidence 45555555543
No 452
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.11 E-value=8.7e-10 Score=129.51 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=60.1
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH---------hcccceeeecCCeEEEecC
Q psy12625 184 LSNPSIIFLDEPTTGL-DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL---------NMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 184 ~~~p~illlDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~---------~~~D~v~~L~~G~iv~~G~ 252 (612)
..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.. +. +.||..++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 7999999999999999889999999999864 43 6899999999998766553
No 453
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.10 E-value=2.6e-10 Score=106.66 Aligned_cols=63 Identities=25% Similarity=0.256 Sum_probs=48.8
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTT----------GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSA 230 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPts----------gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 230 (612)
..+.++.++...+++...+|+++++|||++ +.|......+.+++....+.+.++|+++|.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 344556667888899999999999999994 555565667666666665679999999998764
No 454
>PRK01156 chromosome segregation protein; Provisional
Probab=99.06 E-value=7.5e-10 Score=132.31 Aligned_cols=94 Identities=26% Similarity=0.296 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCcc----------------ccCcccCCCChhhhhHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625 148 KVDSIADSLSIST----------------CKNTLTKHLSGGQKKRLSI------ALELLSNPSIIFLDEPTTGLDYLNAT 205 (612)
Q Consensus 148 ~v~~~l~~lgL~~----------------~~~~~~~~LSgGerqRv~i------a~aL~~~p~illlDEPtsgLD~~~~~ 205 (612)
...+++..+|+.. .....+..||||||+|++| |++++.+|++++|||||+|||+....
T Consensus 765 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~ 844 (895)
T PRK01156 765 LTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRT 844 (895)
T ss_pred HHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHH
Confidence 4566777788742 1123567899999999975 58999999999999999999999999
Q ss_pred HHHHHHHHHHh-C-C-CEEEEEecCCchHHHhcccceeeec
Q psy12625 206 NLVKLLRDMAH-Q-G-TMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 206 ~i~~~l~~l~~-~-g-~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
.+.+.++...+ . | .+||++||++. ....||+++.+.
T Consensus 845 ~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~~d~ii~~~ 883 (895)
T PRK01156 845 NLKDIIEYSLKDSSDIPQVIMISHHRE--LLSVADVAYEVK 883 (895)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECchH--HHHhcCeEEEEE
Confidence 99999986543 3 3 48999999975 458999999997
No 455
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=4.1e-10 Score=138.90 Aligned_cols=72 Identities=31% Similarity=0.376 Sum_probs=63.2
Q ss_pred cccCCCChhhhh------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCchHH
Q psy12625 164 TLTKHLSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-----QGTMIICTLHQPSASL 232 (612)
Q Consensus 164 ~~~~~LSgGerq------Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~~~~i 232 (612)
...+.||||||| |++||++++.+|++++|||||+|||+.+...+.+.|..+.. .|.+||++||++. .+
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~ 1273 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FV 1273 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HH
Confidence 345789999999 99999999999999999999999999999999999988742 4789999999975 56
Q ss_pred Hhcc
Q psy12625 233 LNMA 236 (612)
Q Consensus 233 ~~~~ 236 (612)
..+|
T Consensus 1274 ~~~~ 1277 (1311)
T TIGR00606 1274 ELLG 1277 (1311)
T ss_pred HHHh
Confidence 6554
No 456
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.98 E-value=1.6e-09 Score=116.94 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=108.5
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l 122 (612)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..++ ..|.|.+.|+.. .
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-----~~gvI~~iGerg----------------------~ 195 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-----DINVISLVGERG----------------------R 195 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCC-----CeEEEEeCCCCc----------------------c
Confidence 4577775 99999999999999999999999999998875 467776666541 2
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHh-------hCCCEEEEeC
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELL-------SNPSIIFLDE 194 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~-------~~p~illlDE 194 (612)
+|.|.+... +..-|+.+. .=....+-|.|+|+|++.+.+.+ .++-++++||
T Consensus 196 ev~e~~~~~---------------------l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 196 EVKDFIRKE---------------------LGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred cHHHHHHHH---------------------hhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 444443211 111111110 01233578999999999999888 7899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 195 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
||+..|+. .++-..+.+....|.+..+.+|.+ .+ ++|.-...+|.+...+..
T Consensus 255 lTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L---~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KL---LERSGKTQKGSITGIYTV 306 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hH---HHHhccCCCcceEEEEEE
Confidence 99999996 555556666654588888877742 33 444444577887666544
No 457
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.94 E-value=1.1e-09 Score=134.47 Aligned_cols=79 Identities=32% Similarity=0.431 Sum_probs=68.9
Q ss_pred cCcccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc
Q psy12625 162 KNTLTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD 237 (612)
Q Consensus 162 ~~~~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D 237 (612)
.++.+..||||||+|++||++++ .+|+++||||||++||+.+...+.++|+.+++ +.++|++||++. ....||
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d 1159 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVAD 1159 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhh
Confidence 35667789999999999999985 67799999999999999999999999999875 478999999976 357899
Q ss_pred ceeeec
Q psy12625 238 YLYVLT 243 (612)
Q Consensus 238 ~v~~L~ 243 (612)
+++.+.
T Consensus 1160 ~~~~~~ 1165 (1179)
T TIGR02168 1160 QLYGVT 1165 (1179)
T ss_pred hHeeee
Confidence 997664
No 458
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.93 E-value=5.1e-10 Score=120.55 Aligned_cols=52 Identities=25% Similarity=0.359 Sum_probs=45.7
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee-EEEECCEeccc
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG-YIEINETRLQD 101 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G-~I~~~g~~~~~ 101 (612)
+.+|++||+++++||+++|+|||||||||||+ +|+..| .+| +|.++|+++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~-----~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKF-----SEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCC-----CCCCEEEECCEECCC
Confidence 46899999999999999999999999999999 677665 345 89999998754
No 459
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.92 E-value=1.3e-07 Score=96.34 Aligned_cols=231 Identities=17% Similarity=0.200 Sum_probs=149.7
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCC------CC--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHhh
Q psy12625 351 CFRDRFLTKVRLSLHLIIGSFLGIMYRGIG------DD--AARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRRE 422 (612)
Q Consensus 351 ~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~------~~--~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE 422 (612)
....+.....+....+..+...+..+.+.+ .. ......-.|.+.+..++.........+.. ..+...+.|=
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~ 123 (286)
T COG0842 45 LVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFR-EREFGTLERL 123 (286)
T ss_pred eeecccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHh-HHhhCcHHHH
Confidence 333444444444445555555555554442 11 11122223444444444433332222211 1244444454
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHh-c-CChhHHH
Q psy12625 423 HFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGM-I-LDVKNGV 500 (612)
Q Consensus 423 ~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~-~-~~~~~a~ 500 (612)
..+..-+ ..+++++.+...-...+...+...+..+..| ......+..+...+.+..+...++|.++++ . .+.+.+.
T Consensus 124 ~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 201 (286)
T COG0842 124 LVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCAS 201 (286)
T ss_pred HhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455432 5677777777777776666666666667777 334455666677777778888888887773 3 4567788
Q ss_pred HHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChhHHHHHcCCCCCC
Q psy12625 501 IFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGD 580 (612)
Q Consensus 501 ~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~~~L~~~~~~~~~ 580 (612)
.++.++..++..++|.+.|.+.+|.|++|+.++.|.+|+.+++-....+... ...
T Consensus 202 ~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------------------------~~~ 256 (286)
T COG0842 202 AVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------------------------NDG 256 (286)
T ss_pred HHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-------------------------hhh
Confidence 8888999999999999999999999999999999999999998765443110 112
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12625 581 YSYDLFFLIVSYILVKIASYLVLYFQINR 609 (612)
Q Consensus 581 ~~~~~~il~~~~~~~~~~~~~~L~~~~~~ 609 (612)
.|.++++++++.+++.+++...++++.++
T Consensus 257 ~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 257 IWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 78889999999999999999888877654
No 460
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.91 E-value=2.4e-08 Score=100.42 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=56.8
Q ss_pred CCChhhhhHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH------HHhcc
Q psy12625 168 HLSGGQKKRLSIALELLS--NPSIIFLDEPTTG---LDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS------LLNMA 236 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~--~p~illlDEPtsg---LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~------i~~~~ 236 (612)
..|.++++.+.....++. +|+++++||||+. .|.....++++.++.++++|.|+++++|+.... +..++
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 456788999999999998 9999999999964 555555566666777777889999999986521 34455
Q ss_pred cceeeec
Q psy12625 237 DYLYVLT 243 (612)
Q Consensus 237 D~v~~L~ 243 (612)
|-++.|+
T Consensus 180 DgvI~L~ 186 (234)
T PRK06067 180 DVYLKLR 186 (234)
T ss_pred EEEEEEE
Confidence 5555554
No 461
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.90 E-value=9e-09 Score=100.97 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=43.6
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
+++++|..+|+++++|||. |......+ .+.+..|..++.|+|.++. .+..||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4788899999999999996 55543333 3445678999999999863 57789987774
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.84 E-value=9.5e-09 Score=112.52 Aligned_cols=151 Identities=16% Similarity=0.203 Sum_probs=96.6
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCC
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLT 123 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lT 123 (612)
.++++.+..+++|++++++||||+||||++..|++.... ..|. +.++++.+|. ...+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~-----~~G~---------------~kV~LI~~Dt---~Rig 300 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM-----RHGA---------------SKVALLTTDS---YRIG 300 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH-----hcCC---------------CeEEEEeCCc---cchh
Confidence 356677777889999999999999999999999997642 1121 2478888876 3378
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH-HHHHHHHhhCC-----CEEEEeCCCC
Q psy12625 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR-LSIALELLSNP-----SIIFLDEPTT 197 (612)
Q Consensus 124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR-v~ia~aL~~~p-----~illlDEPts 197 (612)
+.|+|.+.+.+.. .+........+...+..++.+.....+.+...+++.. +.-..+++.++ .+|+||.++.
T Consensus 301 A~EQLr~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 301 GHEQLRIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 9999998766532 1111112233444556677776666777755454432 33444455554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy12625 198 GLDYLNATNLVKLLRDMAHQGTMIICTLH 226 (612)
Q Consensus 198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H 226 (612)
+ ..+.+.++.....+.+=++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3344555555554554334444
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.83 E-value=4.6e-09 Score=128.96 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=67.7
Q ss_pred ccCCCChhhhhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccccee
Q psy12625 165 LTKHLSGGQKKRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLY 240 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 240 (612)
.+..||||||++++||++++. +|++++||||+++||+.++..+.++|+++++ +.++|++||++. ....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 456799999999999999985 6799999999999999999999999999865 467899999974 568999998
Q ss_pred eecC
Q psy12625 241 VLTE 244 (612)
Q Consensus 241 ~L~~ 244 (612)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7753
No 464
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.83 E-value=1.4e-08 Score=102.53 Aligned_cols=136 Identities=22% Similarity=0.322 Sum_probs=86.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC-EeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL 134 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g-~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l 134 (612)
|++..|+||+|+|||||+--++--.. +|.=...+ ... .-...+-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-------~G~~~~g~~~~~----~~~~~Vlyi~~Ed------------------ 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-------LGKNLFGGGLKV----TEPGRVVYLSAED------------------ 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-------cCccccCCcccc----CCCceEEEEECCC------------------
Confidence 67889999999999999877653221 12111110 110 0122344544221
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHH----------------HHhhCCCEEEEeCCCC-
Q psy12625 135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL----------------ELLSNPSIIFLDEPTT- 197 (612)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~----------------aL~~~p~illlDEPts- 197 (612)
+..+..+++..+...+++.+..++... .+|+.|++.+++ ....+|+++++| |++
T Consensus 52 ------~~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 ------PREEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred ------CHHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 122334556666666665544443332 256666666554 335799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc
Q psy12625 198 -----GLDYLNATNLVKLLRDMAH-QGTMIICTLHQPS 229 (612)
Q Consensus 198 -----gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~ 229 (612)
.+|+.....+++.|+++++ .|.+|++++|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 4799999999999999987 5999999999864
No 465
>PRK02224 chromosome segregation protein; Provisional
Probab=98.80 E-value=8.9e-09 Score=122.98 Aligned_cols=78 Identities=33% Similarity=0.474 Sum_probs=67.2
Q ss_pred cCCCChhhhh------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCCchHH
Q psy12625 166 TKHLSGGQKK------RLSIALELLSN-----P-SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT-MIICTLHQPSASL 232 (612)
Q Consensus 166 ~~~LSgGerq------Rv~ia~aL~~~-----p-~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~-tvi~~~H~~~~~i 232 (612)
+..||||||+ |+++|++++.+ | +++++||||++||+.....+.+.|+.+.+.|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4579999999 99999998864 3 67999999999999999999999999987654 8999999975 3
Q ss_pred HhcccceeeecCC
Q psy12625 233 LNMADYLYVLTEG 245 (612)
Q Consensus 233 ~~~~D~v~~L~~G 245 (612)
...+|+++.|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5789999999643
No 466
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.80 E-value=1.6e-07 Score=84.51 Aligned_cols=119 Identities=29% Similarity=0.317 Sum_probs=78.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL 134 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l 134 (612)
++..+.|.||+|+||||+++.|++..... ..+-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP----GGGVIYIDGEDILEEVLDQLL-------------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC----CCCEEEECCEEccccCHHHHH--------------------------
Confidence 46789999999999999999999987631 113455554432111000000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q psy12625 135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK----- 209 (612)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~----- 209 (612)
....+.......+++..+..++++--.+|.++++||+..-.+.........
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred ------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 011112223566777777777777777799999999999999998887765
Q ss_pred -HHHHHHhCCCEEEEEecC
Q psy12625 210 -LLRDMAHQGTMIICTLHQ 227 (612)
Q Consensus 210 -~l~~l~~~g~tvi~~~H~ 227 (612)
........+..+|+++|.
T Consensus 107 ~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 107 LLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHhcCCCEEEEEeCC
Confidence 222333457788888883
No 467
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.79 E-value=6.5e-08 Score=90.79 Aligned_cols=131 Identities=11% Similarity=0.025 Sum_probs=95.9
Q ss_pred ccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHH--HHHHHHHHHHHHHHHHHHHHhH
Q psy12625 412 YPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELD--RFAMFLLICVFLTLYSQGMGVL 489 (612)
Q Consensus 412 f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~--~f~~f~~~~~l~~~~~~~~g~~ 489 (612)
...|+..+.|-+..-. +...|+++|++...-..+++.++..++.++ .|.+.... ..+.++++..+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888774 899999999999999998888877777754 38776632 2233333334444455555555
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHH
Q psy12625 490 VGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGIL 544 (612)
Q Consensus 490 i~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~ 544 (612)
++...+.+.+.....++.+|++..||.+.|.+++|+|++|+.+++|++|+.|++=
T Consensus 92 ~a~~~~~~~~~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFAMEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 5544333334434566788889999999999999999999999999999999874
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.75 E-value=4.4e-10 Score=124.83 Aligned_cols=168 Identities=15% Similarity=0.172 Sum_probs=106.1
Q ss_pred cccce-EEEEeCCeEEEEECCCCCcHHHHHHHH--HCCCCCCCCCCceeEEEECCEecc-chHhhccceEEEccCCCCCC
Q psy12625 45 ILKDI-SGVFVSKELSVILGPSGSGKTKLLDIL--AGYRRPKKTETNSGYIEINETRLQ-DHRMLRKESCYIMQDNLLQE 120 (612)
Q Consensus 45 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~l--~g~~~p~~~~~~~G~I~~~g~~~~-~~~~~~~~i~yv~Q~~~l~~ 120 (612)
-|+.+ .+=+.+|..+.|.||+|||||||..-+ .|..++ -+.-+++...+-. +.....+..|+-.++...-.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~-----ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF-----DEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC
Confidence 45665 567999999999999999999998755 354331 1234555443311 11112234555443211000
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH--HHHhhCCCEEEEeCCCCC
Q psy12625 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA--LELLSNPSIIFLDEPTTG 198 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia--~aL~~~p~illlDEPtsg 198 (612)
++.+ +. ... ....+.+++.+++++..++....+|+|++|||.|+ .++..+|+..
T Consensus 84 ------~l~~---~~----~~~---~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~-------- 139 (484)
T TIGR02655 84 ------KLFI---LD----ASP---DPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV-------- 139 (484)
T ss_pred ------ceEE---Ee----cCc---hhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch--------
Confidence 0000 00 000 01112345667777778888889999999999999 6666665433
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-------H-Hhcccceeeec
Q psy12625 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS-------L-LNMADYLYVLT 243 (612)
Q Consensus 199 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~-------i-~~~~D~v~~L~ 243 (612)
...+..+.++++.+++.|.|+|+++|+.... + ..++|.|+.|+
T Consensus 140 --~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 --SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred --HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5678889999999988999999999986421 1 45789999886
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.65 E-value=9.2e-09 Score=103.05 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=83.1
Q ss_pred cccce-EEEEeCCeEEEEECCCCCcHHHHHHHHH--CCCCCCCCCCceeEEEECCEeccch-HhhccceEEEccCCCCCC
Q psy12625 45 ILKDI-SGVFVSKELSVILGPSGSGKTKLLDILA--GYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIMQDNLLQE 120 (612)
Q Consensus 45 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~l~--g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~Q~~~l~~ 120 (612)
-|+++ .+=+++|++++|.||+|+|||||...++ +..+ -++.+++......+. ....+..++.+|+....+
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~------g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~ 81 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD------GDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEG 81 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc------CCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcC
Confidence 45553 5679999999999999999999987654 4332 134466665331111 111234555555322212
Q ss_pred CCCHHHHHHHHH--HhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCC
Q psy12625 121 LLTVEESLTVAA--HLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198 (612)
Q Consensus 121 ~lTv~e~l~~~~--~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsg 198 (612)
.+.+.|.+.... .... ...+.++...++.++++..|+.. .+.++-.+..+++|||+
T Consensus 82 ~l~i~d~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~-------------------~~vvIDsl~~l~~~~~~-- 139 (229)
T TIGR03881 82 KLVIIDALMKEKEDEWSL-RELSIEELLNKVIEAKKYLGYGH-------------------ARLVIDSMSAFWLDKPA-- 139 (229)
T ss_pred CEEEEEcccccccccccc-ccCCHHHHHHHHHHHHHhhccCc-------------------eEEEecCchhhhccChH--
Confidence 222221110000 0000 01222333334444444433211 12233334444455553
Q ss_pred CCHHHHHHHHHHHHH-HHhCCCEEEEEecCCch-------HHHhcccceeeec
Q psy12625 199 LDYLNATNLVKLLRD-MAHQGTMIICTLHQPSA-------SLLNMADYLYVLT 243 (612)
Q Consensus 199 LD~~~~~~i~~~l~~-l~~~g~tvi~~~H~~~~-------~i~~~~D~v~~L~ 243 (612)
...++...|++ +++.|.|+++++|.... .+..++|.|+.|+
T Consensus 140 ----~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 140 ----MARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred ----HHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 23444444444 45579999999996421 2345678888876
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.63 E-value=3.3e-08 Score=96.79 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=69.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG 137 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~ 137 (612)
+++|.||||||||||.+.|++... .|.+. ++++|+.. ..++..+...... ...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-------~~~~~-----------------v~~~D~~~-~~~~~~~~~~~~~-~~~- 53 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-------NPKVV-----------------IISQDSYY-KDLSHEELEERKN-NNY- 53 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-------CCCeE-----------------EEEecccc-cccccccHHHhcc-CCC-
Confidence 579999999999999999999763 12222 22222211 1122222211110 000
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625 138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201 (612)
Q Consensus 138 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~ 201 (612)
..+.....+...+.++.+...+..+.+..+.|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 54 -~~~~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 54 -DHPDAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred -CCCCcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 01111112344566676766666677788899999877665 5788999999999999986
No 471
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.62 E-value=3.1e-07 Score=100.13 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=107.5
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchH----------hhccceEE
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR----------MLRKESCY 111 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~----------~~~~~i~y 111 (612)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..++ ..|.+...|..-.+.. .+++.+.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~-----~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv 223 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEA-----DVNVIALIGERGREVREFIEHDLGEEGLKRSVVV 223 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CEEEEEEEeecchHHHHHHHHHhcccccceEEEE
Confidence 35689999 99999999999999999999999999999775 4566666554322211 12233444
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEE
Q psy12625 112 IMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIF 191 (612)
Q Consensus 112 v~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~ill 191 (612)
+.+.+. ++.+-..- +.. .-. +.|.+...|-+-. -...+++ |.+=|.--+. +.
T Consensus 224 ~~~~d~-----~p~~r~~~-~~~----------a~t-~AE~frd~G~~Vl--l~~DslT-----r~A~A~REis----l~ 275 (440)
T TIGR01026 224 VATSDQ-----SPLLRLKG-AYV----------ATA-IAEYFRDQGKDVL--LLMDSVT-----RFAMAQREIG----LA 275 (440)
T ss_pred EECCCC-----CHHHHHHH-HHH----------HHH-HHHHHHHCCCCEE--EEEeChH-----HHHHHHHHHH----Hh
Confidence 444332 11111110 000 001 1122222232100 0011222 1111110010 23
Q ss_pred EeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 192 LDEP--TTGLDYLNATNLVKLLRDMAHQGT-------MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 192 lDEP--tsgLD~~~~~~i~~~l~~l~~~g~-------tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
+.|| +.|+|+.....+-+++.+....+. ||++..||..+ .++|++.-+.||+++.....++.
T Consensus 276 ~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 276 AGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred cCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 4575 559999999999999999877667 88889998753 57899999999999998876644
No 472
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=5.2e-08 Score=104.36 Aligned_cols=58 Identities=29% Similarity=0.411 Sum_probs=54.3
Q ss_pred CChhhhhHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 169 LSGGQKKRLSIALELLS---------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~---------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
+|.||+|++.||..|+. +|+|++||||+++||+..+..+++.|.+. |.+|++|+|++.
T Consensus 276 ~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 276 ASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 89999999999999999 99999999999999999999999999764 679999999864
No 473
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=5.7e-08 Score=105.11 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=70.5
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--H------hhccceEEEc
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--R------MLRKESCYIM 113 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~------~~~~~i~yv~ 113 (612)
...+++++ +++.+||.++|+||||+|||||+++|+|..++. ...-|.|-.+|.++.+. + ..|..+++++
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~d--v~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~ 218 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD--VVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAP 218 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCC--eEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEec
Confidence 35699999 999999999999999999999999999988752 11236666666554321 1 1245799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHh
Q psy12625 114 QDNLLQELLTVEESLTVAAHL 134 (612)
Q Consensus 114 Q~~~l~~~lTv~e~l~~~~~l 134 (612)
|++..+..+++.|++...+..
T Consensus 219 ~d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 219 ADESPLMRIKATELCHAIATY 239 (434)
T ss_pred CCCChhhhHHHHHHHHHHHHH
Confidence 999999999999998876654
No 474
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.59 E-value=7.9e-07 Score=105.25 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=57.5
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh--cccceeeecCCeEEE
Q psy12625 179 IALELLSNPSIIFLDEPTTGL-DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN--MADYLYVLTEGYCTY 249 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~--~~D~v~~L~~G~iv~ 249 (612)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.. +.+ .++.++-..+.++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCcceec
Confidence 677888999999999999999 7999999999999999889999999999874 444 345555555555554
No 475
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.56 E-value=3.6e-07 Score=97.31 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=78.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHH
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAA 132 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 132 (612)
.+++.++.|.||+||||||+|+++.+.+.+ ...|.|..-+.++. . ......+.+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~----~~~~~i~tiEdp~E-~-~~~~~~~~i~q~e---------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINK----NAAGHIITIEDPIE-Y-VHRNKRSLINQRE---------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCc----CCCCEEEEEcCChh-h-hccCccceEEccc----------------
Confidence 356889999999999999999999986652 12456655443311 0 0000111111100
Q ss_pred HhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy12625 133 HLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212 (612)
Q Consensus 133 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~ 212 (612)
.|.. . .--.-+++++|-.+|+++++||+. |+.++...++
T Consensus 177 -----------------------vg~~--------~----~~~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~--- 215 (343)
T TIGR01420 177 -----------------------VGLD--------T----LSFANALRAALREDPDVILIGEMR---DLETVELALT--- 215 (343)
T ss_pred -----------------------cCCC--------C----cCHHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---
Confidence 0000 0 001223567788899999999997 8888765444
Q ss_pred HHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 213 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
.+..|..|+.|+|..+. ....+|++-|-
T Consensus 216 -aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~~ 243 (343)
T TIGR01420 216 -AAETGHLVFGTLHTNSA--AQTIERIIDVF 243 (343)
T ss_pred -HHHcCCcEEEEEcCCCH--HHHHHHHHHhc
Confidence 35679999999999753 56778887653
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.55 E-value=1.3e-07 Score=91.82 Aligned_cols=84 Identities=20% Similarity=0.178 Sum_probs=60.7
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCC--CCCCCC
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN--LLQELL 122 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~--~l~~~l 122 (612)
..+=+.+.+++|+.++|+||||||||||+++|+|+.+| ..|.|.+++..-.. ...+..++++.|.+ ...+..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~-----~~~~i~ied~~E~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP-----DERIITIEDTAELQ-LPHPNWVRLVTRPGNVEGSGEV 87 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC-----CCCEEEECCccccC-CCCCCEEEEEEecCCCCCCCcc
Confidence 44555667899999999999999999999999999875 46889887743111 11234566666544 345668
Q ss_pred CHHHHHHHHHHh
Q psy12625 123 TVEESLTVAAHL 134 (612)
Q Consensus 123 Tv~e~l~~~~~l 134 (612)
|+.+.+..+.+.
T Consensus 88 ~~~~~l~~~lR~ 99 (186)
T cd01130 88 TMADLLRSALRM 99 (186)
T ss_pred CHHHHHHHHhcc
Confidence 888888776543
No 477
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.51 E-value=2.3e-07 Score=111.02 Aligned_cols=79 Identities=32% Similarity=0.414 Sum_probs=70.4
Q ss_pred cccCCCChhhhhHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc
Q psy12625 164 TLTKHLSGGQKKRLSIALELL------SN--PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM 235 (612)
Q Consensus 164 ~~~~~LSgGerqRv~ia~aL~------~~--p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~ 235 (612)
+.++.|||||+=.++||.+|+ .+ -++|||||||..||+.+...+++.|..+...+.+|+++||++ ++.+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 466789999999988888775 45 699999999999999999999999999998899999999995 56789
Q ss_pred ccceeeecC
Q psy12625 236 ADYLYVLTE 244 (612)
Q Consensus 236 ~D~v~~L~~ 244 (612)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998865
No 478
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.48 E-value=2.7e-07 Score=100.01 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=65.4
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC-
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE- 96 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g- 96 (612)
+..++.++++..+. ....+++.++ .+.+||.++|+|||||||||||++|+++.+| ..|.|.+.|
T Consensus 137 p~~~~r~~v~~~l~---------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p-----d~gvv~liGe 201 (450)
T PRK06002 137 PPAMTRARVETGLR---------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAF-----DTVVIALVGE 201 (450)
T ss_pred CCCeEeecceEEcC---------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCC-----Ceeeeeeccc
Confidence 44577788887763 2356888886 8999999999999999999999999999875 578888854
Q ss_pred --Eeccch------HhhccceEEEccCCC
Q psy12625 97 --TRLQDH------RMLRKESCYIMQDNL 117 (612)
Q Consensus 97 --~~~~~~------~~~~~~i~yv~Q~~~ 117 (612)
+++.+. ...++.+++|+|.+.
T Consensus 202 rgrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 202 RGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred CCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 444321 113467999999775
No 479
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.44 E-value=5.1e-07 Score=106.57 Aligned_cols=138 Identities=19% Similarity=0.188 Sum_probs=84.8
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l 122 (612)
..|-+|+++. +.+.++.|.|||++||||+||.++-..- +.+.-+|||-+..-++
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-----------------------lAq~G~~VPa~~a~i~-- 648 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-----------------------LAQIGSFVPAESARIG-- 648 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-----------------------HHhcCCceeccceEec--
Confidence 3466788877 6778999999999999999999864311 0011123332211100
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH--hhCCCEEEEeCC---CC
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL--LSNPSIIFLDEP---TT 197 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~p~illlDEP---ts 197 (612)
+ ++.+..++|- .|....++|-=+.....++..| +++++++++||| |+
T Consensus 649 -~------------------------~d~I~triga---~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 649 -I------------------------VDRIFTRIGA---SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred -c------------------------cCeeeeccCc---ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 0 0111111121 2233345666555555555554 459999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccc
Q psy12625 198 GLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADY 238 (612)
Q Consensus 198 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 238 (612)
.+|..+ .....++.+.+. |.+++++||.. ++.+++|+
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 999444 455566667665 58899999994 56777775
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.43 E-value=1.6e-07 Score=90.31 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=46.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhc-cceEEEccCCCCCCCCCHHHHHHH
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLR-KESCYIMQDNLLQELLTVEESLTV 130 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~-~~i~yv~Q~~~l~~~lTv~e~l~~ 130 (612)
+||+++|+|+||||||||+++|+|+..+ +.++|.++......+ ...++.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998763 477887654332222 235666776555555555555544
No 481
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.39 E-value=4.3e-07 Score=112.08 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=54.7
Q ss_pred CcccCCCChhhhhHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625 163 NTLTKHLSGGQKKRLS----IALE--------LLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228 (612)
Q Consensus 163 ~~~~~~LSgGerqRv~----ia~a--------L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 228 (612)
++..++||||||||++ +|++ +..+|++++|||||+|||+.++..+++++.++ |.++|+++|..
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4456789999999996 5644 55899999999999999999999999999887 68899999874
No 482
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.38 E-value=7.8e-07 Score=109.05 Aligned_cols=164 Identities=18% Similarity=0.183 Sum_probs=89.9
Q ss_pred cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHH
Q psy12625 47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEE 126 (612)
Q Consensus 47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 126 (612)
.=+++..+++++++|.|++|+|||||++.+++.... ...|.+++++..+..... .+-.++... .
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~----~F~g~vfv~~~~v~~~~~-----~~~~~~~~~-------~ 261 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR----QFQSSVFIDRAFISKSME-----IYSSANPDD-------Y 261 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh----cCCeEEEeeccccccchh-----hcccccccc-------c
Confidence 334667788999999999999999999999887652 357899887632211100 010110000 0
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy12625 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206 (612)
Q Consensus 127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~ 206 (612)
+... ...++.+.++++..++. +..+ ++.|+| |..++-+++||+- |.. .
T Consensus 262 ~~~~------------~l~~~~l~~il~~~~~~------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 262 NMKL------------HLQRAFLSEILDKKDIK------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred chhH------------HHHHHHHHHHhCCCCcc------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---H
Confidence 0000 01123344455544442 2222 556665 3456667889984 433 3
Q ss_pred HHHHHHHHH---hCCCEEEEEecCCchHHHhc-ccceeeecCCeEEEecCccChhhHHhhcCC
Q psy12625 207 LVKLLRDMA---HQGTMIICTLHQPSASLLNM-ADYLYVLTEGYCTYQGTVPGLVPYLSDFGY 265 (612)
Q Consensus 207 i~~~l~~l~---~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 265 (612)
.++.++... ..|.+||+|||+... +... +|+++.+.. -+.+++.+.|....+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 344444432 358899999999642 2222 566554431 123456666655433
No 483
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.38 E-value=6.1e-06 Score=97.48 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=44.3
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625 182 ELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQGTMIICTLHQPSA 230 (612)
Q Consensus 182 aL~~~p~illlDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 230 (612)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3457899999999999999 889999999999999889999999999863
No 484
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.30 E-value=1.1e-05 Score=82.88 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=32.6
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.+.|+++.+-+++|+++.|.||+|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568888889999999999999999999999877654
No 485
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.24 E-value=1.7e-05 Score=76.80 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCc-cccCcccCCCChhhhhHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy12625 148 KVDSIADSLSIS-TCKNTLTKHLSGGQKKRLS--IALELLS-NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217 (612)
Q Consensus 148 ~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~--ia~aL~~-~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 217 (612)
.+.+.++..++. -...+++..+|+||+|++. +++.+-. ++++ .|+|++|..+..++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 445566666664 2345567779999999987 5555443 3343 399999999999999999988764
No 486
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.21 E-value=1.4e-05 Score=94.62 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=42.8
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 183 LLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 183 L~~~p~illlDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999888999999999986
No 487
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.20 E-value=3.5e-06 Score=91.54 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=74.0
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC---Eeccch--Hhhc---cceEEE--
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQDH--RMLR---KESCYI-- 112 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g---~~~~~~--~~~~---~~i~yv-- 112 (612)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..++ ...|.|.+.| +++.+. +.++ ...+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvv 226 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVV 226 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEE
Confidence 4588888 99999999999999999999999999998742 1346777755 443221 1111 234555
Q ss_pred ---ccCCC--CCCCCCHHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHHcCCc-----cccCcccCCCC
Q psy12625 113 ---MQDNL--LQELLTVEESLTVAAHLKLGNQ-YSRKAKESKVDSIADSLSIS-----TCKNTLTKHLS 170 (612)
Q Consensus 113 ---~Q~~~--l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~v~~~l~~lgL~-----~~~~~~~~~LS 170 (612)
+|++. +.+.+ +...+.-..+.+ +.. ....+...++.+++++++|. ...+.++..+|
T Consensus 227 ats~q~p~~rlnp~~-va~~IAE~~r~~-g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 227 STSDQSSQLRLNAAY-VGTAIAEYFRDQ-GKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred eCCCCCHHHHhhHHH-HHHHHHHHHHHc-CCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 78763 22323 333332222222 111 12345677888899999984 33444454443
No 488
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.19 E-value=7e-06 Score=74.46 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=41.3
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCc
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-----QGTMIICTLHQPS 229 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~~ 229 (612)
++..........++.++++||.-.. ++.....+.+.+..... .+..+|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5556666677788999999998765 66667788888887753 4678888888653
No 489
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.18 E-value=3e-06 Score=72.23 Aligned_cols=51 Identities=39% Similarity=0.537 Sum_probs=39.7
Q ss_pred CcccCCCChhhh-hHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy12625 163 NTLTKHLSGGQK-KRLSIALELL------S------NPSIIFLDEPTTGLDYLNATNLVKLLRD 213 (612)
Q Consensus 163 ~~~~~~LSgGer-qRv~ia~aL~------~------~p~illlDEPtsgLD~~~~~~i~~~l~~ 213 (612)
.+..+.+||||| ..+.++.+++ . .|++++||||+++||+.....+++.|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 456788999999 5555544432 2 3799999999999999999999999875
No 490
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.18 E-value=2.1e-06 Score=67.39 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=30.2
Q ss_pred ccceEEEEeC-CeEEEEECCCCCcHHHHHHHHHCCCCC
Q psy12625 46 LKDISGVFVS-KELSVILGPSGSGKTKLLDILAGYRRP 82 (612)
Q Consensus 46 L~~vs~~i~~-Ge~~aI~GpsGsGKSTLL~~l~g~~~p 82 (612)
+++.++.+.+ |+++.|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4556777875 579999999999999999999876553
No 491
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.14 E-value=8.9e-06 Score=92.94 Aligned_cols=114 Identities=22% Similarity=0.322 Sum_probs=76.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCC---CceeEEEECCEeccc-hHhhccceEEEccCCCCCCCCCHHHHHHH
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTE---TNSGYIEINETRLQD-HRMLRKESCYIMQDNLLQELLTVEESLTV 130 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~---~~~G~I~~~g~~~~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 130 (612)
..+.++|+||||+|||||++++.+..++..+. ...+-+.+||..+.. .... ++-.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i--------------------~~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV--------------------TNPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH--------------------hHHhc
Confidence 34679999999999999999999876532111 123446666654210 0000 01011
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy12625 131 AAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210 (612)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~ 210 (612)
. .. .+...+.+.+.++..|+.+..+..+..+||| +|++|| +..||+..+..+.+.
T Consensus 234 g-------~~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~ 288 (615)
T TIGR02903 234 G-------SV-HDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKV 288 (615)
T ss_pred C-------Cc-cHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHH
Confidence 0 01 1112234556688889988888889999999 999999 799999999998888
Q ss_pred HHH
Q psy12625 211 LRD 213 (612)
Q Consensus 211 l~~ 213 (612)
|++
T Consensus 289 Le~ 291 (615)
T TIGR02903 289 LED 291 (615)
T ss_pred Hhh
Confidence 865
No 492
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.12 E-value=0.0012 Score=67.50 Aligned_cols=205 Identities=15% Similarity=0.159 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12625 336 CLSQFCILLKRTLIKCFRDRFL-TKVRLSLHLIIGSFLGIMYRGIGDD---AARVHNNLSLLFFSTMFLMFTALSSMIIT 411 (612)
Q Consensus 336 ~~~Q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~al~~G~~f~~~~~~---~~~~~~~~g~lff~~~~~~~~~~~~~~~~ 411 (612)
.++-.+.|.+|.++..+|+..+ ..--++..+++.++.+.+|-.+-.. .--..--.|.+.+..... +.......
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~~~~l~~G~~~w~f~~~---~i~~~~~s 92 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNFLAYLLAGLILWFFFSE---AISEGAGS 92 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH---HHHhHHHH
Confidence 4566788999999998887642 2223444444555555444322111 111222233332222211 22233344
Q ss_pred ccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy12625 412 YPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVG 491 (612)
Q Consensus 412 f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~ 491 (612)
+.+...+++|-+ ..+..+.+++++.++-...+..++....+-|.-+.+ ...+..+...+.+..+.+.++|.++|
T Consensus 93 ~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~a 166 (263)
T COG1682 93 VVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLILA 166 (263)
T ss_pred hhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556665543 378899999999998777766666555555544443 34556666667777888888899998
Q ss_pred hc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhc
Q psy12625 492 MI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYG 549 (612)
Q Consensus 492 ~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~ 549 (612)
++ .....-..+.+.++-+++..+|.+-+.+.+|.-++|+.++||+.+-.|.+=...++
T Consensus 167 ~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~ 225 (263)
T COG1682 167 SLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLG 225 (263)
T ss_pred hHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 88 44433333345566668888999999999999999999999999999987666554
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.09 E-value=3.6e-06 Score=81.60 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=36.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQD 115 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~ 115 (612)
|++++|+||||||||||++.|++...+ .+.+++..+... ...+..+++++|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--------QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--------eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999997652 466777654322 1223445555553
No 494
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.08 E-value=1.6e-06 Score=80.95 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy12625 147 SKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALEL-----LSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214 (612)
Q Consensus 147 ~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL-----~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 214 (612)
..+.+.++..+..- ...++...++++++++.....+. ...|+++ |+|++|.....++.+.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 34555666665431 23455667899998887766653 3345655 99999999999999988764
No 495
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.05 E-value=4.5e-06 Score=81.06 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=60.9
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch-HHHhcccceeeecCC
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSA-SLLNMADYLYVLTEG 245 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~-~i~~~~D~v~~L~~G 245 (612)
|+-+|..||..+..+|+.+..+| +.+||.....+.+.+++..++|.+|++.+|.... .....||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 88999999999999999988887 8899999999999998887667899999998632 256788988777644
No 496
>PRK01889 GTPase RsgA; Reviewed
Probab=98.04 E-value=3.4e-06 Score=90.17 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=55.1
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~ 121 (612)
++.+.-.+++|+.++|+|+||+|||||+|.|+|..++ .+|+|.+++.... ....++.+++++|+..++.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~-----~~G~i~~~~~~g~-~tt~~~~l~~l~~~~~l~Dt 254 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ-----KTGAVREDDSKGR-HTTTHRELHPLPSGGLLIDT 254 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc-----ceeeEEECCCCCc-chhhhccEEEecCCCeecCC
Confidence 4555556789999999999999999999999998875 6899999875422 22345679999998877754
No 497
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.03 E-value=0.00013 Score=73.53 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=36.7
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEecCCchHHHhccc
Q psy12625 184 LSNPSIIFLDEPTTGLDYLNATNLVKL-LRDMAH-QGTMIICTLHQPSASLLNMAD 237 (612)
Q Consensus 184 ~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~-~g~tvi~~~H~~~~~i~~~~D 237 (612)
+++..++++||+..|=++.....+... ++.+.+ .+..++++||... +.+..+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~--l~~~~~ 173 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE--LAELLE 173 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG--GGGHHH
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch--hHHHhh
Confidence 456789999999999999988877654 456666 4888999999964 444443
No 498
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.02 E-value=0.001 Score=67.27 Aligned_cols=218 Identities=15% Similarity=0.131 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy12625 341 CILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI----GDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEF 416 (612)
Q Consensus 341 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~----~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er 416 (612)
+.+.||.++...|.|..+..-.+..++.|+.. ..+.+. ..+..+... + |......+.-+.+.+ --
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~---~--f~~~~~~~~~~~p~l-----~~ 70 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTP---F--FSLAPWVFLFLIPAI-----TM 70 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHH---H--HHHHHHHHHHHHHHH-----HH
Confidence 46789999999999998887777777666442 222110 111111111 1 111111111111111 12
Q ss_pred hHHHhhccCCCc--------chHHHHHHHHHHHHHHHHHhHH---hhhhhhhcccc--CCccHHHHHHHHHHHHHHHHHH
Q psy12625 417 EITRREHFNRWF--------SLKAYYLATMVADIPVQLLCTV---IYCVTVYFISK--QPLELDRFAMFLLICVFLTLYS 483 (612)
Q Consensus 417 ~v~~rE~~~~~Y--------~~~~y~la~~~~~~p~~~~~~~---~f~~i~Y~~~g--l~~~~~~f~~f~~~~~l~~~~~ 483 (612)
..+.+||++|.. +...+.++|.++-.-..++..+ ++....++... -..+.+.++...+..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 456677777754 5678899999988655443322 12222222211 1234555555555556677788
Q ss_pred HHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCC--cccchhhhccChHHHHHHHHHHHHhcCCCCccccCCC
Q psy12625 484 QGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDS--PDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEE 560 (612)
Q Consensus 484 ~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~ 560 (612)
.++|.++|++ .+...|..++-.. .+.++.|+-. ..++ |++.+|+.|+||..|-.+.. . + .+
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~--~~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-~------g-~i----- 214 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFL--CFLFYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-R------G-VI----- 214 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHH--HHHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-c------C-cc-----
Confidence 8999999999 5555554433222 2223233211 2334 88899999999976653322 1 0 11
Q ss_pred ccccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12625 561 YCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYF 605 (612)
Q Consensus 561 ~C~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~ 605 (612)
.|.|+...+.+.+++..++...++.
T Consensus 215 --------------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 --------------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred --------------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 0456777777777777777666543
No 499
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.02 E-value=1.5e-05 Score=87.86 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=43.2
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCCEEEEEecCCch-------HHHhcccceeeecCCe
Q psy12625 185 SNPSIIFLDEPTTGL----D-----YLNATNLVKLLRDMAH-QGTMIICTLHQPSA-------SLLNMADYLYVLTEGY 246 (612)
Q Consensus 185 ~~p~illlDEPtsgL----D-----~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G~ 246 (612)
.+|+++++|.-++=. + ....++++..|.++++ .|.|++++.|...+ .+.+++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999876421 1 2334566666777765 79999999996432 1467899999997654
No 500
>PRK08149 ATP synthase SpaL; Validated
Probab=98.01 E-value=8.7e-06 Score=88.18 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=56.8
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch-H-h----hccceEEEccC
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-R-M----LRKESCYIMQD 115 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-~-~----~~~~i~yv~Q~ 115 (612)
+..+++++ +.+.+||.++|+|+||+|||||+++|++..++. ...-|.|-.+|+++.+. + . ..+++++|+..
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~d--v~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEAD--VFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCC--eEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 35689999 999999999999999999999999999987752 12349999999886432 1 1 23567888765
Q ss_pred CC
Q psy12625 116 NL 117 (612)
Q Consensus 116 ~~ 117 (612)
..
T Consensus 215 sd 216 (428)
T PRK08149 215 SD 216 (428)
T ss_pred CC
Confidence 43
Done!