Query psy12625
Match_columns 612
No_of_seqs 477 out of 2715
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 15:24:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 7.4E-52 2.5E-56 436.6 27.1 225 18-257 22-252 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 1.1E-51 3.9E-56 437.8 27.0 219 20-257 3-222 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 8E-52 2.7E-56 436.2 24.5 219 20-257 4-227 (359)
4 3tif_A Uncharacterized ABC tra 100.0 3.6E-51 1.2E-55 410.2 27.5 224 20-256 1-232 (235)
5 2olj_A Amino acid ABC transpor 100.0 4.9E-51 1.7E-55 415.2 27.4 219 20-257 24-247 (263)
6 3gfo_A Cobalt import ATP-bindi 100.0 3.9E-51 1.3E-55 418.3 26.0 222 19-258 6-233 (275)
7 1b0u_A Histidine permease; ABC 100.0 6.1E-51 2.1E-55 414.9 26.0 219 20-257 6-241 (262)
8 2pcj_A ABC transporter, lipopr 100.0 1.1E-50 3.9E-55 403.6 26.7 214 20-253 4-223 (224)
9 1vpl_A ABC transporter, ATP-bi 100.0 1.3E-50 4.6E-55 410.5 26.1 220 20-258 15-235 (256)
10 1z47_A CYSA, putative ABC-tran 100.0 1.7E-50 5.9E-55 426.2 26.4 223 17-257 11-234 (355)
11 2it1_A 362AA long hypothetical 100.0 1.4E-50 4.7E-55 428.4 25.5 219 20-257 3-222 (362)
12 2yyz_A Sugar ABC transporter, 100.0 1.1E-50 3.8E-55 428.6 24.4 219 20-257 3-222 (359)
13 1g29_1 MALK, maltose transport 100.0 3E-50 1E-54 427.9 27.3 219 20-257 3-228 (372)
14 1g6h_A High-affinity branched- 100.0 1.4E-50 4.9E-55 411.2 23.5 220 20-255 7-239 (257)
15 1oxx_K GLCV, glucose, ABC tran 100.0 1.7E-50 5.7E-55 427.3 23.1 219 20-257 3-229 (353)
16 4g1u_C Hemin import ATP-bindin 100.0 2.3E-50 7.7E-55 411.3 23.3 218 19-257 10-236 (266)
17 1v43_A Sugar-binding transport 100.0 2.5E-50 8.4E-55 427.9 24.2 219 20-257 11-230 (372)
18 1ji0_A ABC transporter; ATP bi 100.0 4.5E-50 1.6E-54 403.5 23.8 218 20-257 6-227 (240)
19 3d31_A Sulfate/molybdate ABC t 100.0 5.8E-50 2E-54 421.8 23.7 214 21-257 2-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 1.6E-49 5.4E-54 399.1 21.2 213 21-257 2-215 (240)
21 2yz2_A Putative ABC transporte 100.0 3.9E-49 1.3E-53 402.6 22.9 220 20-258 2-227 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 9.1E-49 3.1E-53 396.4 23.4 219 20-254 3-229 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 5.3E-49 1.8E-53 403.7 20.3 224 18-257 19-251 (279)
24 2zu0_C Probable ATP-dependent 100.0 1.9E-47 6.6E-52 390.2 27.0 233 18-265 18-260 (267)
25 2nq2_C Hypothetical ABC transp 100.0 1.9E-47 6.4E-52 387.1 24.3 210 20-257 4-216 (253)
26 2ixe_A Antigen peptide transpo 100.0 3.7E-48 1.3E-52 396.2 18.0 220 19-257 15-244 (271)
27 3nh6_A ATP-binding cassette SU 100.0 7.4E-48 2.5E-52 399.2 18.2 214 18-258 51-277 (306)
28 2qi9_C Vitamin B12 import ATP- 100.0 3.2E-47 1.1E-51 384.2 22.1 209 20-257 4-221 (249)
29 2ff7_A Alpha-hemolysin translo 100.0 2.8E-47 9.5E-52 384.6 20.5 213 19-257 6-231 (247)
30 1sgw_A Putative ABC transporte 100.0 4E-47 1.4E-51 374.8 19.7 203 18-247 8-210 (214)
31 2pjz_A Hypothetical protein ST 100.0 2.3E-46 7.8E-51 380.8 20.2 212 20-258 1-215 (263)
32 1mv5_A LMRA, multidrug resista 100.0 8.8E-47 3E-51 380.3 14.4 211 21-257 2-225 (243)
33 2ghi_A Transport protein; mult 100.0 1.2E-45 4.2E-50 375.4 21.1 213 19-257 16-241 (260)
34 3gd7_A Fusion complex of cysti 100.0 1.3E-45 4.4E-50 394.1 16.3 213 18-258 17-242 (390)
35 2pze_A Cystic fibrosis transme 100.0 1.3E-44 4.4E-49 361.2 18.9 200 20-257 6-217 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.9E-44 6.6E-49 361.7 17.1 203 20-257 3-216 (237)
37 3qf4_A ABC transporter, ATP-bi 100.0 1.5E-44 5.3E-49 407.6 15.7 219 18-258 339-566 (587)
38 4a82_A Cystic fibrosis transme 100.0 3.4E-44 1.2E-48 404.4 17.3 215 18-258 337-564 (578)
39 3b5x_A Lipid A export ATP-bind 100.0 1.7E-43 5.7E-48 399.2 20.3 214 19-257 340-566 (582)
40 2yl4_A ATP-binding cassette SU 100.0 3.5E-43 1.2E-47 397.5 22.3 217 19-257 339-569 (595)
41 3b60_A Lipid A export ATP-bind 100.0 2E-43 6.9E-48 398.5 18.0 215 19-258 340-567 (582)
42 3qf4_B Uncharacterized ABC tra 100.0 1.2E-43 4.1E-48 401.3 15.2 214 18-258 352-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 7.4E-42 2.5E-46 352.3 15.3 196 19-257 39-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 6.2E-41 2.1E-45 408.3 16.7 218 18-258 1074-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 4.1E-40 1.4E-44 401.1 17.5 216 18-258 413-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 5.5E-40 1.9E-44 399.0 18.0 220 18-258 385-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 4.4E-39 1.5E-43 391.0 18.1 217 19-258 1029-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 2.2E-38 7.5E-43 356.9 21.1 206 18-258 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 2.3E-38 7.7E-43 353.0 19.8 206 18-258 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-37 4E-42 346.6 20.3 208 18-258 267-477 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 2.3E-36 7.8E-41 339.9 16.9 192 43-258 360-559 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 6.2E-37 2.1E-41 345.1 10.2 194 24-246 95-305 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 9.7E-37 3.3E-41 339.9 10.7 198 20-246 20-235 (538)
54 3ux8_A Excinuclease ABC, A sub 100.0 3.9E-36 1.3E-40 344.5 15.6 212 41-257 29-297 (670)
55 2iw3_A Elongation factor 3A; a 100.0 4.4E-35 1.5E-39 340.9 20.5 199 18-257 433-634 (986)
56 2iw3_A Elongation factor 3A; a 100.0 2.4E-35 8.1E-40 343.2 15.4 208 19-252 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 4.4E-34 1.5E-38 327.4 17.3 199 42-257 334-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 9.4E-34 3.2E-38 318.7 8.7 212 20-249 69-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.5E-33 5E-38 313.6 6.6 178 52-248 21-216 (538)
60 2r6f_A Excinuclease ABC subuni 100.0 8.2E-32 2.8E-36 311.2 15.7 202 45-257 639-941 (972)
61 2vf7_A UVRA2, excinuclease ABC 100.0 9.3E-32 3.2E-36 310.4 16.0 219 19-257 501-826 (842)
62 3pih_A Uvrabc system protein A 100.0 6E-31 2.1E-35 306.0 20.8 205 43-258 597-902 (916)
63 2ygr_A Uvrabc system protein A 100.0 2.9E-31 9.8E-36 307.7 15.2 203 45-258 657-960 (993)
64 4aby_A DNA repair protein RECN 100.0 5.4E-29 1.8E-33 269.2 18.3 204 43-251 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.4E-32 8.1E-37 298.3 -10.7 186 46-256 128-336 (460)
66 3b85_A Phosphate starvation-in 99.9 4.8E-30 1.7E-34 251.8 -9.7 145 39-229 9-159 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.8E-26 6.3E-31 245.5 15.5 85 163-249 274-364 (365)
68 1e69_A Chromosome segregation 99.9 6E-26 2.1E-30 237.6 13.5 205 47-255 16-310 (322)
69 1tq4_A IIGP1, interferon-induc 99.9 5E-28 1.7E-32 259.9 -10.9 176 43-245 36-254 (413)
70 4gp7_A Metallophosphoesterase; 99.9 4.7E-26 1.6E-30 216.5 2.7 143 48-229 1-160 (171)
71 1ye8_A Protein THEP1, hypothet 99.9 1.1E-25 3.6E-30 215.7 3.6 147 58-249 2-159 (178)
72 1znw_A Guanylate kinase, GMP k 99.9 4.1E-28 1.4E-32 237.7 -15.6 183 40-244 6-203 (207)
73 2v9p_A Replication protein E1; 99.9 3.7E-28 1.3E-32 250.9 -20.3 168 20-261 101-269 (305)
74 3b9q_A Chloroplast SRP recepto 99.9 7.1E-25 2.4E-29 227.0 -0.2 175 46-247 90-284 (302)
75 2dpy_A FLII, flagellum-specifi 99.9 3E-26 1E-30 248.8 -13.5 194 19-257 130-343 (438)
76 3sop_A Neuronal-specific septi 99.9 7.5E-25 2.5E-29 223.5 -6.2 147 58-228 4-150 (270)
77 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.1E-23 7.1E-28 218.8 2.7 132 45-246 160-291 (330)
78 3aez_A Pantothenate kinase; tr 99.9 6.9E-26 2.3E-30 235.7 -16.3 160 53-246 87-246 (312)
79 2og2_A Putative signal recogni 99.9 8.6E-24 3E-28 223.2 -0.7 173 47-246 148-340 (359)
80 2o5v_A DNA replication and rep 99.9 9.7E-22 3.3E-26 207.8 15.0 84 165-256 261-354 (359)
81 1z6g_A Guanylate kinase; struc 99.9 7.8E-26 2.7E-30 223.6 -19.3 178 43-241 10-206 (218)
82 3qkt_A DNA double-strand break 99.9 3.2E-21 1.1E-25 203.2 14.6 80 162-243 242-327 (339)
83 1cr0_A DNA primase/helicase; R 99.8 1.9E-22 6.6E-27 208.1 2.6 185 43-247 22-237 (296)
84 2obl_A ESCN; ATPase, hydrolase 99.8 5.9E-23 2E-27 216.5 -2.0 192 19-256 44-253 (347)
85 3pih_A Uvrabc system protein A 99.8 1.4E-21 4.8E-26 227.5 8.8 161 73-257 385-559 (916)
86 2jeo_A Uridine-cytidine kinase 99.8 4.4E-22 1.5E-26 200.0 0.6 171 40-246 9-180 (245)
87 4ad8_A DNA repair protein RECN 99.8 1.5E-20 5.2E-25 208.9 11.6 78 165-245 393-473 (517)
88 2o8b_B DNA mismatch repair pro 99.8 1.7E-21 5.8E-26 230.4 4.0 173 19-254 749-938 (1022)
89 1tf7_A KAIC; homohexamer, hexa 99.8 2.4E-23 8.2E-28 231.9 -11.2 172 41-246 23-211 (525)
90 1tf7_A KAIC; homohexamer, hexa 99.8 6.6E-21 2.2E-25 212.2 7.6 156 50-246 275-444 (525)
91 2r6f_A Excinuclease ABC subuni 99.8 8.2E-20 2.8E-24 211.4 14.8 135 120-257 450-599 (972)
92 2vf7_A UVRA2, excinuclease ABC 99.8 3E-20 1E-24 214.7 10.0 184 64-258 270-475 (842)
93 3thx_A DNA mismatch repair pro 99.8 3E-20 1E-24 217.2 6.6 154 41-257 647-812 (934)
94 2ygr_A Uvrabc system protein A 99.8 1.6E-19 5.4E-24 209.7 10.8 131 120-257 467-616 (993)
95 2ehv_A Hypothetical protein PH 99.8 1.7E-20 5.7E-25 187.6 1.3 170 46-244 19-207 (251)
96 2eyu_A Twitching motility prot 99.8 6.9E-20 2.4E-24 185.8 5.4 132 44-244 15-147 (261)
97 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 3.6E-19 1.2E-23 164.9 8.7 83 162-246 51-141 (148)
98 2qnr_A Septin-2, protein NEDD5 99.8 3.3E-21 1.1E-25 199.7 -5.8 157 41-229 9-168 (301)
99 3thx_B DNA mismatch repair pro 99.8 4.2E-20 1.4E-24 215.4 1.4 155 42-249 659-816 (918)
100 3asz_A Uridine kinase; cytidin 99.8 2.4E-21 8.2E-26 189.5 -9.4 146 53-229 3-162 (211)
101 1w1w_A Structural maintenance 99.8 3.8E-18 1.3E-22 185.3 14.6 77 165-243 330-410 (430)
102 4a74_A DNA repair and recombin 99.7 1.8E-19 6.2E-24 177.8 2.2 156 51-246 20-201 (231)
103 3szr_A Interferon-induced GTP- 99.7 3.3E-20 1.1E-24 209.6 -4.8 196 20-260 10-239 (608)
104 1rj9_A FTSY, signal recognitio 99.7 1.1E-19 3.7E-24 188.2 -1.9 150 55-229 101-259 (304)
105 1ewq_A DNA mismatch repair pro 99.7 6.7E-19 2.3E-23 202.5 3.7 148 41-252 564-718 (765)
106 2i3b_A HCR-ntpase, human cance 99.7 1.3E-19 4.6E-24 174.8 -3.9 159 56-251 1-169 (189)
107 1pui_A ENGB, probable GTP-bind 99.7 3.2E-19 1.1E-23 173.5 -3.4 185 20-220 3-202 (210)
108 1wb9_A DNA mismatch repair pro 99.7 3.1E-18 1E-22 198.1 3.0 159 41-253 593-753 (800)
109 1nlf_A Regulatory protein REPA 99.7 4E-17 1.4E-21 166.9 10.2 151 52-229 26-182 (279)
110 1pzn_A RAD51, DNA repair and r 99.7 7.2E-19 2.5E-23 185.7 -3.4 167 45-252 119-309 (349)
111 2w0m_A SSO2452; RECA, SSPF, un 99.7 3.3E-18 1.1E-22 168.6 1.3 169 43-246 9-193 (235)
112 3jvv_A Twitching mobility prot 99.7 1.8E-17 6.1E-22 175.1 6.2 128 52-245 119-246 (356)
113 2qag_C Septin-7; cell cycle, c 99.6 4.1E-18 1.4E-22 183.5 -3.0 163 20-228 11-177 (418)
114 1zp6_A Hypothetical protein AT 99.6 1.1E-18 3.9E-23 167.4 -8.1 153 52-226 5-159 (191)
115 2bdt_A BH3686; alpha-beta prot 99.6 1.3E-19 4.3E-24 174.2 -16.9 172 56-256 2-182 (189)
116 1s96_A Guanylate kinase, GMP k 99.6 2.3E-17 7.8E-22 162.9 -3.7 150 50-261 10-163 (219)
117 3kta_B Chromosome segregation 99.6 2.1E-15 7.2E-20 143.1 8.9 82 162-246 58-145 (173)
118 1lw7_A Transcriptional regulat 99.6 6.6E-19 2.3E-23 187.2 -17.2 175 45-256 157-353 (365)
119 2cvh_A DNA repair and recombin 99.6 2.2E-15 7.4E-20 147.3 8.6 154 44-245 7-185 (220)
120 2gza_A Type IV secretion syste 99.6 6.9E-16 2.4E-20 163.7 3.8 138 46-246 165-303 (361)
121 2bbw_A Adenylate kinase 4, AK4 99.6 5.1E-18 1.8E-22 170.2 -12.1 147 55-217 26-199 (246)
122 2ewv_A Twitching motility prot 99.5 2E-15 6.8E-20 160.7 4.8 131 44-243 126-257 (372)
123 2qag_B Septin-6, protein NEDD5 99.5 2.6E-16 9E-21 168.8 -2.3 172 41-227 26-218 (427)
124 1nij_A Hypothetical protein YJ 99.5 1.7E-18 5.7E-23 180.7 -19.8 161 56-229 4-190 (318)
125 2rcn_A Probable GTPase ENGC; Y 99.5 6.3E-15 2.1E-19 155.1 6.1 140 45-216 205-346 (358)
126 1n0w_A DNA repair protein RAD5 99.5 1E-14 3.5E-19 144.7 6.2 152 51-245 19-209 (243)
127 2f1r_A Molybdopterin-guanine d 99.5 5E-16 1.7E-20 147.3 -5.9 140 57-219 3-164 (171)
128 1htw_A HI0065; nucleotide-bind 99.5 1E-15 3.6E-20 143.2 -3.8 81 40-130 17-97 (158)
129 2yhs_A FTSY, cell division pro 99.5 1.8E-15 6.3E-20 164.3 -2.7 182 46-256 283-477 (503)
130 2qm8_A GTPase/ATPase; G protei 99.5 1E-16 3.4E-21 168.5 -12.6 166 41-216 40-260 (337)
131 3e70_C DPA, signal recognition 99.4 1.1E-14 3.9E-19 151.9 1.9 144 54-228 127-279 (328)
132 3ec2_A DNA replication protein 99.4 4E-15 1.4E-19 141.6 -1.5 48 184-231 98-146 (180)
133 3auy_A DNA double-strand break 99.4 2.5E-13 8.5E-18 144.5 10.7 78 164-244 276-360 (371)
134 2yv5_A YJEQ protein; hydrolase 99.4 7.5E-15 2.6E-19 151.9 -1.3 123 53-182 162-301 (302)
135 2kjq_A DNAA-related protein; s 99.4 7.4E-14 2.5E-18 129.3 4.8 96 44-230 29-127 (149)
136 1odf_A YGR205W, hypothetical 3 99.4 2.7E-14 9.2E-19 146.8 0.7 130 54-203 29-169 (290)
137 1p9r_A General secretion pathw 99.4 1.3E-15 4.4E-20 164.1 -11.3 137 43-191 156-314 (418)
138 1udx_A The GTP-binding protein 99.4 1E-13 3.6E-18 149.0 2.0 172 46-241 147-321 (416)
139 1sxj_E Activator 1 40 kDa subu 99.4 5.3E-13 1.8E-17 140.3 7.3 137 59-230 39-176 (354)
140 2oap_1 GSPE-2, type II secreti 99.3 3E-16 1E-20 173.3 -19.7 175 43-237 247-458 (511)
141 3lda_A DNA repair protein RAD5 99.3 1.3E-12 4.3E-17 140.0 8.4 152 51-246 173-364 (400)
142 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 6.1E-15 2.1E-19 157.2 -13.3 175 52-255 16-210 (392)
143 3c8u_A Fructokinase; YP_612366 99.3 4E-14 1.4E-18 138.2 -6.8 145 53-238 19-168 (208)
144 1in4_A RUVB, holliday junction 99.3 2.4E-14 8.3E-19 150.1 -9.3 171 41-238 29-211 (334)
145 2x8a_A Nuclear valosin-contain 99.3 2.5E-15 8.7E-20 153.3 -17.1 131 41-197 31-164 (274)
146 1lvg_A Guanylate kinase, GMP k 99.2 2.1E-15 7.3E-20 146.3 -19.4 160 54-244 2-173 (198)
147 1t9h_A YLOQ, probable GTPase E 99.2 9.2E-13 3.1E-17 136.0 -0.8 120 51-176 168-303 (307)
148 1u0l_A Probable GTPase ENGC; p 99.2 4.3E-13 1.5E-17 138.6 -3.8 108 52-171 165-294 (301)
149 1sq5_A Pantothenate kinase; P- 99.1 1.6E-12 5.4E-17 134.8 -4.1 139 20-201 37-199 (308)
150 1vma_A Cell division protein F 99.1 7E-11 2.4E-15 122.1 5.4 113 49-215 97-212 (306)
151 2dr3_A UPF0273 protein PH0284; 99.1 9.5E-12 3.3E-16 123.4 -1.1 173 43-244 9-196 (247)
152 2r6a_A DNAB helicase, replicat 99.0 8.4E-11 2.9E-15 128.3 3.5 181 44-247 191-401 (454)
153 1iy2_A ATP-dependent metallopr 99.0 4.9E-13 1.7E-17 136.3 -15.3 127 41-189 60-190 (278)
154 1ls1_A Signal recognition part 99.0 1E-09 3.5E-14 112.9 9.4 119 47-215 91-210 (295)
155 2zr9_A Protein RECA, recombina 99.0 5.7E-10 1.9E-14 117.5 7.0 77 176-252 127-237 (349)
156 1ixz_A ATP-dependent metallopr 98.9 6.5E-13 2.2E-17 133.3 -15.3 131 41-195 36-170 (254)
157 1oix_A RAS-related protein RAB 98.9 1.1E-10 3.9E-15 111.7 0.7 144 58-214 31-189 (191)
158 2px0_A Flagellar biosynthesis 98.9 1.1E-09 3.9E-14 112.6 7.8 141 54-250 103-247 (296)
159 3tr0_A Guanylate kinase, GMP k 98.9 3.3E-11 1.1E-15 116.4 -3.7 68 50-126 1-70 (205)
160 2ius_A DNA translocase FTSK; n 98.9 4.9E-11 1.7E-15 130.9 -3.1 161 48-229 159-343 (512)
161 3lnc_A Guanylate kinase, GMP k 98.9 2.3E-13 8E-18 134.8 -19.7 193 42-247 13-213 (231)
162 3k1j_A LON protease, ATP-depen 98.9 2.2E-11 7.5E-16 137.7 -6.3 161 41-213 45-227 (604)
163 3euj_A Chromosome partition pr 98.9 4.5E-10 1.5E-14 122.4 3.0 52 43-100 17-68 (483)
164 1qhl_A Protein (cell division 98.7 4.3E-10 1.5E-14 111.1 -4.2 60 50-115 22-91 (227)
165 2f9l_A RAB11B, member RAS onco 98.7 1.2E-08 3.9E-13 98.0 5.1 38 176-215 129-166 (199)
166 2qtf_A Protein HFLX, GTP-bindi 98.6 8.5E-08 2.9E-12 101.4 9.5 150 55-216 177-353 (364)
167 1svm_A Large T antigen; AAA+ f 98.6 6.8E-11 2.3E-15 125.5 -14.6 139 43-197 156-312 (377)
168 3hr8_A Protein RECA; alpha and 98.6 4E-08 1.4E-12 103.3 6.3 162 45-251 48-236 (356)
169 2ce7_A Cell division protein F 98.5 6E-08 2.1E-12 105.9 6.1 59 171-229 93-165 (476)
170 4eun_A Thermoresistant glucoki 98.5 5.5E-09 1.9E-13 100.8 -2.6 64 46-118 19-83 (200)
171 2dhr_A FTSH; AAA+ protein, hex 98.4 1.7E-09 5.9E-14 118.7 -10.1 132 42-197 52-187 (499)
172 2xau_A PRE-mRNA-splicing facto 98.4 2.7E-07 9.1E-12 106.9 7.3 77 163-240 185-263 (773)
173 4a1f_A DNAB helicase, replicat 98.4 1.9E-07 6.4E-12 97.5 4.8 129 44-226 34-164 (338)
174 2e87_A Hypothetical protein PH 98.3 3.2E-07 1.1E-11 96.7 5.9 64 164-229 227-293 (357)
175 3nwj_A ATSK2; P loop, shikimat 98.3 3.5E-08 1.2E-12 98.9 -1.7 53 20-81 17-73 (250)
176 4e22_A Cytidylate kinase; P-lo 98.3 5.1E-08 1.7E-12 97.8 -1.3 65 44-116 18-96 (252)
177 3cr8_A Sulfate adenylyltranfer 98.3 1.8E-08 6.3E-13 111.9 -5.2 43 52-99 365-409 (552)
178 3kta_A Chromosome segregation 98.3 3.1E-07 1.1E-11 86.6 3.8 126 45-178 14-152 (182)
179 3uie_A Adenylyl-sulfate kinase 98.2 6.4E-08 2.2E-12 93.2 -3.3 53 41-99 10-64 (200)
180 1zu4_A FTSY; GTPase, signal re 98.2 2.8E-07 9.7E-12 95.6 0.9 79 46-129 95-185 (320)
181 2dy1_A Elongation factor G; tr 98.2 8.2E-07 2.8E-11 101.2 4.2 132 50-229 3-137 (665)
182 1jjv_A Dephospho-COA kinase; P 98.2 2.3E-07 7.8E-12 89.5 -0.3 127 58-243 4-131 (206)
183 3a00_A Guanylate kinase, GMP k 98.1 4.3E-07 1.5E-11 86.4 0.5 27 56-82 1-27 (186)
184 2z4s_A Chromosomal replication 98.1 1.9E-06 6.5E-11 93.4 5.6 95 185-281 193-295 (440)
185 3bh0_A DNAB-like replicative h 98.1 2.6E-06 8.9E-11 88.1 6.3 131 44-226 56-189 (315)
186 3vaa_A Shikimate kinase, SK; s 98.1 1.3E-06 4.3E-11 84.0 3.3 40 41-80 10-49 (199)
187 3tqc_A Pantothenate kinase; bi 98.1 6.3E-08 2.2E-12 100.4 -6.5 41 41-81 71-117 (321)
188 1fnn_A CDC6P, cell division co 98.1 7.7E-06 2.6E-10 86.1 9.0 44 185-229 124-170 (389)
189 2j41_A Guanylate kinase; GMP, 98.0 2.1E-06 7.3E-11 82.3 3.7 31 52-82 2-32 (207)
190 1knq_A Gluconate kinase; ALFA/ 98.0 3.5E-07 1.2E-11 85.7 -2.7 37 54-99 6-42 (175)
191 3b9p_A CG5977-PA, isoform A; A 98.0 3.3E-05 1.1E-09 78.5 11.4 70 171-240 98-184 (297)
192 1kgd_A CASK, peripheral plasma 98.0 2.9E-06 1E-10 80.2 3.0 38 54-95 3-40 (180)
193 1v5w_A DMC1, meiotic recombina 97.9 2.8E-05 9.4E-10 81.4 10.1 139 51-228 117-274 (343)
194 2vp4_A Deoxynucleoside kinase; 97.9 3.8E-06 1.3E-10 82.7 1.9 40 51-99 15-54 (230)
195 3t34_A Dynamin-related protein 97.8 3.6E-05 1.2E-09 80.9 9.5 58 168-226 154-212 (360)
196 3tau_A Guanylate kinase, GMP k 97.8 7.9E-06 2.7E-10 79.1 3.7 29 54-82 6-34 (208)
197 1ega_A Protein (GTP-binding pr 97.8 2.7E-05 9.3E-10 79.9 6.8 65 169-241 101-171 (301)
198 2z43_A DNA repair and recombin 97.8 5.4E-05 1.8E-09 78.5 9.0 139 51-228 102-258 (324)
199 1rz3_A Hypothetical protein rb 97.7 5.4E-06 1.9E-10 79.7 -0.2 41 53-98 19-59 (201)
200 2qt1_A Nicotinamide riboside k 97.7 2.2E-05 7.6E-10 75.5 4.1 30 51-80 16-45 (207)
201 3kl4_A SRP54, signal recogniti 97.7 8.1E-05 2.8E-09 80.0 8.7 125 55-227 96-223 (433)
202 1cke_A CK, MSSA, protein (cyti 97.6 3.5E-06 1.2E-10 82.1 -2.7 59 56-116 5-74 (227)
203 3cf0_A Transitional endoplasmi 97.6 7E-05 2.4E-09 76.7 6.9 30 52-81 45-74 (301)
204 2qby_A CDC6 homolog 1, cell di 97.6 1.3E-05 4.5E-10 83.9 1.3 28 54-81 43-70 (386)
205 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.5E-05 1.2E-09 70.6 4.0 31 47-78 15-45 (149)
206 3ney_A 55 kDa erythrocyte memb 97.6 2.3E-05 8E-10 75.3 2.6 29 53-81 16-44 (197)
207 1kag_A SKI, shikimate kinase I 97.6 2.4E-05 8.2E-10 72.7 2.5 27 55-81 3-29 (173)
208 1sxj_C Activator 1 40 kDa subu 97.5 3.7E-06 1.3E-10 87.6 -3.8 41 41-81 29-71 (340)
209 1ypw_A Transitional endoplasmi 97.5 6.7E-05 2.3E-09 87.3 5.3 30 52-81 234-263 (806)
210 1l8q_A Chromosomal replication 97.5 0.00023 7.8E-09 73.4 8.6 46 184-229 96-142 (324)
211 3llm_A ATP-dependent RNA helic 97.4 2.9E-05 9.9E-10 76.5 1.1 67 170-238 162-229 (235)
212 2wjg_A FEOB, ferrous iron tran 97.4 0.00016 5.3E-09 67.7 5.5 70 185-257 111-184 (188)
213 1u94_A RECA protein, recombina 97.4 0.0034 1.2E-07 65.8 16.1 35 45-79 50-86 (356)
214 3m6a_A ATP-dependent protease 97.4 2.3E-05 7.9E-10 87.1 -0.7 51 42-98 95-145 (543)
215 2p67_A LAO/AO transport system 97.3 1.1E-05 3.6E-10 84.5 -3.3 53 41-98 41-93 (341)
216 2q6t_A DNAB replication FORK h 97.3 0.0005 1.7E-08 74.4 9.4 129 44-225 188-317 (444)
217 2w58_A DNAI, primosome compone 97.3 5.6E-05 1.9E-09 72.2 1.3 25 57-81 55-79 (202)
218 2gj8_A MNME, tRNA modification 97.3 0.00035 1.2E-08 64.9 6.4 27 54-80 2-28 (172)
219 3lxx_A GTPase IMAP family memb 97.3 0.0012 4E-08 64.8 10.5 43 185-227 111-155 (239)
220 3ice_A Transcription terminati 97.3 2.4E-05 8.3E-10 82.2 -1.8 52 20-80 133-198 (422)
221 4fcw_A Chaperone protein CLPB; 97.2 0.00039 1.3E-08 70.8 7.2 25 57-81 48-72 (311)
222 3qks_A DNA double-strand break 97.2 0.00017 5.7E-09 69.5 4.0 31 47-78 15-45 (203)
223 1mky_A Probable GTP-binding pr 97.2 0.00023 7.9E-09 76.8 5.3 73 58-130 182-263 (439)
224 3h4m_A Proteasome-activating n 97.2 0.00041 1.4E-08 69.8 6.7 29 53-81 48-76 (285)
225 2b8t_A Thymidine kinase; deoxy 97.2 0.00035 1.2E-08 68.4 6.0 53 186-243 89-150 (223)
226 4eaq_A DTMP kinase, thymidylat 97.2 0.00016 5.6E-09 71.0 3.4 37 45-81 12-51 (229)
227 3bgw_A DNAB-like replicative h 97.2 0.0012 3.9E-08 71.5 10.3 34 45-78 186-219 (444)
228 3bos_A Putative DNA replicatio 97.1 0.00032 1.1E-08 68.1 4.6 45 185-229 103-149 (242)
229 2www_A Methylmalonic aciduria 97.1 9.7E-05 3.3E-09 77.4 0.6 40 54-98 72-111 (349)
230 2pez_A Bifunctional 3'-phospho 97.1 0.00025 8.6E-09 66.3 3.4 28 54-81 3-30 (179)
231 2qag_A Septin-2, protein NEDD5 97.1 1.6E-05 5.5E-10 83.8 -5.5 47 19-81 16-62 (361)
232 1m2o_B GTP-binding protein SAR 97.0 0.00066 2.2E-08 64.0 5.7 52 44-97 12-67 (190)
233 2qor_A Guanylate kinase; phosp 97.0 0.0003 1E-08 67.4 3.1 29 53-81 9-37 (204)
234 2i1q_A DNA repair and recombin 97.0 0.0019 6.7E-08 66.4 9.4 33 46-78 87-120 (322)
235 3auy_A DNA double-strand break 96.9 0.00075 2.6E-08 71.2 5.9 31 46-77 16-46 (371)
236 1y63_A LMAJ004144AAA protein; 96.9 0.00034 1.2E-08 66.0 2.9 32 48-79 2-33 (184)
237 1m7g_A Adenylylsulfate kinase; 96.9 0.0002 6.9E-09 69.1 1.1 41 52-97 21-63 (211)
238 3d8b_A Fidgetin-like protein 1 96.9 0.0036 1.2E-07 65.5 10.7 27 54-80 115-141 (357)
239 1f6b_A SAR1; gtpases, N-termin 96.8 0.00028 9.5E-09 67.2 1.5 36 43-79 13-48 (198)
240 2v1u_A Cell division control p 96.8 0.0011 3.7E-08 69.2 6.1 27 54-80 42-68 (387)
241 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0023 7.8E-08 63.2 8.0 27 54-80 37-63 (262)
242 2wji_A Ferrous iron transport 96.8 0.0017 5.9E-08 59.5 6.5 24 58-81 5-28 (165)
243 2if2_A Dephospho-COA kinase; a 96.8 0.00049 1.7E-08 65.6 2.7 21 58-78 3-23 (204)
244 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.011 3.6E-07 61.0 12.8 28 53-80 42-69 (322)
245 1xp8_A RECA protein, recombina 96.7 0.019 6.5E-07 60.3 14.3 27 52-78 70-96 (366)
246 1q57_A DNA primase/helicase; d 96.7 0.011 3.6E-07 64.8 12.7 34 45-78 231-264 (503)
247 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00019 6.4E-09 74.9 -1.4 39 43-81 9-49 (359)
248 2ffh_A Protein (FFH); SRP54, s 96.7 0.00039 1.3E-08 74.6 0.9 47 47-100 91-137 (425)
249 1np6_A Molybdopterin-guanine d 96.6 0.0008 2.7E-08 63.2 2.7 40 57-98 7-46 (174)
250 2yvu_A Probable adenylyl-sulfa 96.6 0.00097 3.3E-08 62.7 3.2 28 54-81 11-38 (186)
251 3cm0_A Adenylate kinase; ATP-b 96.6 0.0011 3.7E-08 62.1 3.5 25 54-78 2-26 (186)
252 2p5t_B PEZT; postsegregational 96.6 0.00047 1.6E-08 68.6 0.9 46 45-98 22-67 (253)
253 3t61_A Gluconokinase; PSI-biol 96.6 0.00085 2.9E-08 64.0 2.6 25 56-80 18-42 (202)
254 3lxw_A GTPase IMAP family memb 96.5 0.0083 2.8E-07 59.3 9.7 57 171-228 87-149 (247)
255 2qgz_A Helicase loader, putati 96.5 0.0016 5.6E-08 66.8 4.6 24 56-79 152-175 (308)
256 1qhx_A CPT, protein (chloramph 96.5 0.0015 5.2E-08 60.6 3.6 26 56-81 3-28 (178)
257 3kb2_A SPBC2 prophage-derived 96.5 0.0014 4.8E-08 60.2 3.3 23 58-80 3-25 (173)
258 1lv7_A FTSH; alpha/beta domain 96.4 0.0011 3.8E-08 65.7 2.2 35 45-81 36-70 (257)
259 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0013 4.6E-08 69.7 2.9 48 50-97 16-69 (396)
260 1sxj_D Activator 1 41 kDa subu 96.3 0.0011 3.8E-08 68.5 2.1 42 186-229 133-174 (353)
261 1q3t_A Cytidylate kinase; nucl 96.3 0.0017 5.7E-08 63.7 3.2 28 52-79 12-39 (236)
262 2zej_A Dardarin, leucine-rich 96.3 0.0018 6.2E-08 60.5 3.1 23 58-80 4-26 (184)
263 1kht_A Adenylate kinase; phosp 96.3 0.0022 7.4E-08 60.0 3.5 25 56-80 3-27 (192)
264 1j8m_F SRP54, signal recogniti 96.3 0.00034 1.2E-08 71.6 -2.3 47 47-99 89-136 (297)
265 3io5_A Recombination and repai 96.3 0.016 5.6E-07 59.3 10.1 28 51-79 24-52 (333)
266 1xx6_A Thymidine kinase; NESG, 96.2 0.0057 2E-07 58.2 6.3 53 186-243 81-142 (191)
267 3r20_A Cytidylate kinase; stru 96.2 0.0021 7.3E-08 63.2 3.4 24 56-79 9-32 (233)
268 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0062 2.1E-07 62.6 6.9 28 51-78 118-145 (331)
269 3cmw_A Protein RECA, recombina 96.2 0.0073 2.5E-07 74.6 8.6 29 52-80 728-756 (1706)
270 3ihw_A Centg3; RAS, centaurin, 96.2 0.0052 1.8E-07 57.4 5.8 22 58-79 22-43 (184)
271 3syl_A Protein CBBX; photosynt 96.2 0.014 4.9E-07 59.0 9.3 28 54-81 65-92 (309)
272 2ze6_A Isopentenyl transferase 96.1 0.0023 8E-08 63.6 3.2 24 57-80 2-25 (253)
273 2rhm_A Putative kinase; P-loop 96.1 0.0025 8.4E-08 59.8 3.2 26 54-79 3-28 (193)
274 1ex7_A Guanylate kinase; subst 96.1 0.0029 9.8E-08 60.1 3.2 23 58-80 3-25 (186)
275 3lw7_A Adenylate kinase relate 96.1 0.0031 1E-07 57.7 3.3 19 58-76 3-21 (179)
276 3trf_A Shikimate kinase, SK; a 96.0 0.0033 1.1E-07 58.7 3.5 26 55-80 4-29 (185)
277 1vht_A Dephospho-COA kinase; s 96.0 0.0038 1.3E-07 60.2 3.7 24 55-78 3-26 (218)
278 2plr_A DTMP kinase, probable t 96.0 0.004 1.4E-07 59.2 3.8 27 55-81 3-29 (213)
279 2v54_A DTMP kinase, thymidylat 96.0 0.0037 1.3E-07 59.2 3.6 26 55-80 3-28 (204)
280 3iij_A Coilin-interacting nucl 96.0 0.0032 1.1E-07 58.6 3.0 25 55-79 10-34 (180)
281 2jaq_A Deoxyguanosine kinase; 96.0 0.0036 1.2E-07 59.1 3.4 23 58-80 2-24 (205)
282 2qp9_X Vacuolar protein sortin 95.9 0.017 5.9E-07 60.2 8.8 27 54-80 82-108 (355)
283 3vfd_A Spastin; ATPase, microt 95.9 0.034 1.1E-06 58.7 11.0 26 55-80 147-172 (389)
284 3cmw_A Protein RECA, recombina 95.9 0.089 3E-06 65.1 16.0 34 45-78 370-405 (1706)
285 1ly1_A Polynucleotide kinase; 95.9 0.0043 1.5E-07 57.3 3.6 22 57-78 3-24 (181)
286 3hu3_A Transitional endoplasmi 95.9 0.0064 2.2E-07 66.5 5.4 28 53-80 235-262 (489)
287 1gvn_B Zeta; postsegregational 95.9 0.0038 1.3E-07 63.3 3.3 37 53-96 30-66 (287)
288 1via_A Shikimate kinase; struc 95.9 0.0041 1.4E-07 57.7 3.2 23 58-80 6-28 (175)
289 2wwf_A Thymidilate kinase, put 95.8 0.0043 1.5E-07 59.1 3.2 26 54-79 8-33 (212)
290 2j9r_A Thymidine kinase; TK1, 95.8 0.013 4.4E-07 56.7 6.5 53 186-243 101-162 (214)
291 2c95_A Adenylate kinase 1; tra 95.7 0.0048 1.7E-07 57.9 3.3 26 54-79 7-32 (196)
292 2r8r_A Sensor protein; KDPD, P 95.7 0.0021 7.3E-08 62.7 0.7 49 179-227 77-126 (228)
293 1gtv_A TMK, thymidylate kinase 95.7 0.0024 8.2E-08 61.1 1.0 24 58-81 2-25 (214)
294 1uf9_A TT1252 protein; P-loop, 95.7 0.0053 1.8E-07 58.0 3.3 24 56-79 8-31 (203)
295 1tev_A UMP-CMP kinase; ploop, 95.7 0.006 2E-07 57.1 3.7 24 56-79 3-26 (196)
296 1nn5_A Similar to deoxythymidy 95.7 0.005 1.7E-07 58.7 3.1 27 54-80 7-33 (215)
297 1nks_A Adenylate kinase; therm 95.6 0.0052 1.8E-07 57.4 3.0 23 58-80 3-25 (194)
298 2orv_A Thymidine kinase; TP4A 95.6 0.029 1E-06 54.8 8.3 53 185-243 89-150 (234)
299 3k53_A Ferrous iron transport 95.6 0.0049 1.7E-07 61.7 2.8 23 58-80 5-27 (271)
300 3q72_A GTP-binding protein RAD 95.6 0.0088 3E-07 54.1 4.3 24 58-81 4-27 (166)
301 1xjc_A MOBB protein homolog; s 95.6 0.0058 2E-07 57.0 3.1 25 57-81 5-29 (169)
302 3co5_A Putative two-component 95.5 0.021 7E-07 51.3 6.5 42 186-228 75-116 (143)
303 1c1y_A RAS-related protein RAP 95.5 0.011 3.9E-07 53.2 4.9 23 58-80 5-27 (167)
304 1u8z_A RAS-related protein RAL 95.5 0.011 3.7E-07 53.2 4.7 23 58-80 6-28 (168)
305 3cmu_A Protein RECA, recombina 95.5 0.023 7.8E-07 71.2 8.9 76 176-251 449-558 (2050)
306 1kao_A RAP2A; GTP-binding prot 95.5 0.011 3.8E-07 53.1 4.7 23 58-80 5-27 (167)
307 1z2a_A RAS-related protein RAB 95.5 0.0086 2.9E-07 54.1 3.9 23 58-80 7-29 (168)
308 1aky_A Adenylate kinase; ATP:A 95.5 0.0078 2.7E-07 58.0 3.6 27 54-80 2-28 (220)
309 2bwj_A Adenylate kinase 5; pho 95.5 0.0054 1.9E-07 57.7 2.4 26 54-79 10-35 (199)
310 1z0j_A RAB-22, RAS-related pro 95.5 0.01 3.5E-07 53.7 4.2 23 58-80 8-30 (170)
311 1ek0_A Protein (GTP-binding pr 95.4 0.01 3.6E-07 53.6 4.1 23 58-80 5-27 (170)
312 2z0h_A DTMP kinase, thymidylat 95.4 0.008 2.7E-07 56.4 3.4 23 58-80 2-24 (197)
313 2vli_A Antibiotic resistance p 95.4 0.0058 2E-07 56.8 2.3 26 55-80 4-29 (183)
314 2ged_A SR-beta, signal recogni 95.3 0.0072 2.5E-07 56.4 2.8 24 57-80 49-72 (193)
315 3ake_A Cytidylate kinase; CMP 95.3 0.0076 2.6E-07 57.1 3.0 23 58-80 4-26 (208)
316 2nzj_A GTP-binding protein REM 95.3 0.0086 3E-07 54.6 3.3 23 58-80 6-28 (175)
317 2erx_A GTP-binding protein DI- 95.3 0.016 5.6E-07 52.3 5.2 23 58-80 5-27 (172)
318 2ce2_X GTPase HRAS; signaling 95.3 0.011 3.7E-07 53.0 3.9 23 58-80 5-27 (166)
319 4dsu_A GTPase KRAS, isoform 2B 95.3 0.015 5.1E-07 53.7 4.8 23 58-80 6-28 (189)
320 1zd8_A GTP:AMP phosphotransfer 95.3 0.0083 2.8E-07 58.2 3.2 26 54-79 5-30 (227)
321 2ew1_A RAS-related protein RAB 95.2 0.017 5.8E-07 54.9 5.2 23 58-80 28-50 (201)
322 1ko7_A HPR kinase/phosphatase; 95.2 0.012 4.2E-07 60.3 4.3 37 42-79 131-167 (314)
323 2cdn_A Adenylate kinase; phosp 95.2 0.011 3.6E-07 56.2 3.6 25 55-79 19-43 (201)
324 1ky3_A GTP-binding protein YPT 95.2 0.011 3.9E-07 54.0 3.7 23 58-80 10-32 (182)
325 3fb4_A Adenylate kinase; psych 95.2 0.0097 3.3E-07 57.0 3.4 22 58-79 2-23 (216)
326 3tw8_B RAS-related protein RAB 95.2 0.012 4.2E-07 53.7 4.0 23 58-80 11-33 (181)
327 3q85_A GTP-binding protein REM 95.2 0.0099 3.4E-07 53.9 3.2 22 59-80 5-26 (169)
328 1z08_A RAS-related protein RAB 95.2 0.013 4.4E-07 53.1 3.9 23 58-80 8-30 (170)
329 2dyk_A GTP-binding protein; GT 95.2 0.0089 3E-07 53.7 2.8 23 58-80 3-25 (161)
330 1zuh_A Shikimate kinase; alpha 95.2 0.011 3.8E-07 54.2 3.4 23 57-79 8-30 (168)
331 3b1v_A Ferrous iron uptake tra 95.1 0.01 3.6E-07 59.6 3.5 23 58-80 5-27 (272)
332 2fn4_A P23, RAS-related protei 95.1 0.013 4.4E-07 53.6 3.9 23 58-80 11-33 (181)
333 2pbr_A DTMP kinase, thymidylat 95.1 0.011 3.7E-07 55.3 3.4 23 58-80 2-24 (195)
334 1qvr_A CLPB protein; coiled co 95.1 0.025 8.4E-07 66.1 7.1 25 57-81 589-613 (854)
335 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.013 4.3E-07 53.6 3.7 23 58-80 9-31 (177)
336 1ukz_A Uridylate kinase; trans 95.1 0.011 3.8E-07 55.9 3.4 24 56-79 15-38 (203)
337 1e6c_A Shikimate kinase; phosp 95.1 0.0096 3.3E-07 54.7 2.9 23 57-79 3-25 (173)
338 1fzq_A ADP-ribosylation factor 95.1 0.0087 3E-07 55.6 2.5 22 58-79 18-39 (181)
339 1zak_A Adenylate kinase; ATP:A 95.1 0.0089 3E-07 57.7 2.6 26 55-80 4-29 (222)
340 3dl0_A Adenylate kinase; phosp 95.0 0.012 3.9E-07 56.5 3.4 22 58-79 2-23 (216)
341 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.013 4.4E-07 58.3 3.8 25 55-79 3-27 (260)
342 2lkc_A Translation initiation 95.0 0.013 4.6E-07 53.5 3.7 26 55-80 7-32 (178)
343 2pt5_A Shikimate kinase, SK; a 95.0 0.013 4.3E-07 53.6 3.4 22 58-79 2-23 (168)
344 2a9k_A RAS-related protein RAL 95.0 0.019 6.5E-07 52.7 4.7 23 58-80 20-42 (187)
345 2bcg_Y Protein YP2, GTP-bindin 95.0 0.022 7.5E-07 53.8 5.2 23 58-80 10-32 (206)
346 2iyv_A Shikimate kinase, SK; t 95.0 0.0099 3.4E-07 55.4 2.7 23 57-79 3-25 (184)
347 2bov_A RAla, RAS-related prote 95.0 0.019 6.6E-07 53.9 4.7 23 58-80 16-38 (206)
348 1g16_A RAS-related protein SEC 95.0 0.0094 3.2E-07 53.9 2.4 23 58-80 5-27 (170)
349 1qf9_A UMP/CMP kinase, protein 95.0 0.012 4.2E-07 54.7 3.2 24 56-79 6-29 (194)
350 1svi_A GTP-binding protein YSX 95.0 0.01 3.4E-07 55.4 2.6 24 57-80 24-47 (195)
351 1r2q_A RAS-related protein RAB 95.0 0.017 5.8E-07 52.1 4.1 23 58-80 8-30 (170)
352 3clv_A RAB5 protein, putative; 94.9 0.016 5.4E-07 54.0 3.9 23 58-80 9-31 (208)
353 3pqc_A Probable GTP-binding pr 94.9 0.011 3.7E-07 54.9 2.6 23 58-80 25-47 (195)
354 3tlx_A Adenylate kinase 2; str 94.9 0.014 4.9E-07 57.4 3.6 25 55-79 28-52 (243)
355 3kkq_A RAS-related protein M-R 94.9 0.022 7.5E-07 52.4 4.7 23 58-80 20-42 (183)
356 3bc1_A RAS-related protein RAB 94.9 0.017 5.8E-07 53.4 3.9 23 58-80 13-35 (195)
357 2qmh_A HPR kinase/phosphorylas 94.8 0.024 8.1E-07 54.2 4.8 36 43-79 22-57 (205)
358 2cxx_A Probable GTP-binding pr 94.8 0.012 3.9E-07 54.6 2.7 22 59-80 4-25 (190)
359 2hxs_A RAB-26, RAS-related pro 94.8 0.014 4.7E-07 53.4 3.2 23 58-80 8-30 (178)
360 1z0f_A RAB14, member RAS oncog 94.8 0.018 6.1E-07 52.5 3.9 23 58-80 17-39 (179)
361 1upt_A ARL1, ADP-ribosylation 94.8 0.013 4.4E-07 53.2 2.8 23 58-80 9-31 (171)
362 3con_A GTPase NRAS; structural 94.8 0.024 8.2E-07 52.6 4.7 23 58-80 23-45 (190)
363 1jal_A YCHF protein; nucleotid 94.8 0.019 6.4E-07 60.2 4.3 41 56-96 2-48 (363)
364 2oil_A CATX-8, RAS-related pro 94.8 0.019 6.6E-07 53.5 4.1 23 58-80 27-49 (193)
365 2bme_A RAB4A, RAS-related prot 94.7 0.02 6.8E-07 52.8 4.0 24 58-81 12-35 (186)
366 1m7b_A RND3/RHOE small GTP-bin 94.7 0.023 7.7E-07 52.7 4.4 23 58-80 9-31 (184)
367 1r8s_A ADP-ribosylation factor 94.7 0.014 4.7E-07 52.7 2.8 21 59-79 3-23 (164)
368 1uj2_A Uridine-cytidine kinase 94.7 0.015 5.3E-07 57.3 3.4 24 57-80 23-46 (252)
369 2y8e_A RAB-protein 6, GH09086P 94.7 0.017 5.9E-07 52.6 3.5 23 58-80 16-38 (179)
370 2grj_A Dephospho-COA kinase; T 94.7 0.016 5.6E-07 55.0 3.4 24 56-79 12-35 (192)
371 3dm5_A SRP54, signal recogniti 94.7 0.24 8.1E-06 53.1 12.7 27 55-81 99-125 (443)
372 3a8t_A Adenylate isopentenyltr 94.7 0.026 8.8E-07 58.4 5.1 27 55-81 39-65 (339)
373 2a5j_A RAS-related protein RAB 94.7 0.029 9.9E-07 52.3 5.1 23 58-80 23-45 (191)
374 4ag6_A VIRB4 ATPase, type IV s 94.7 0.0085 2.9E-07 63.3 1.5 45 186-230 262-309 (392)
375 1wf3_A GTP-binding protein; GT 94.7 0.016 5.5E-07 59.1 3.5 26 54-80 6-31 (301)
376 2efe_B Small GTP-binding prote 94.7 0.021 7.1E-07 52.3 4.0 23 58-80 14-36 (181)
377 3t5g_A GTP-binding protein RHE 94.7 0.024 8.2E-07 52.1 4.3 22 58-79 8-29 (181)
378 1moz_A ARL1, ADP-ribosylation 94.7 0.0092 3.1E-07 55.0 1.5 23 56-78 18-40 (183)
379 3oes_A GTPase rhebl1; small GT 94.6 0.025 8.6E-07 53.3 4.5 25 57-81 25-49 (201)
380 3reg_A RHO-like small GTPase; 94.6 0.028 9.6E-07 52.4 4.8 24 58-81 25-48 (194)
381 2g6b_A RAS-related protein RAB 94.6 0.015 5.2E-07 53.2 2.8 23 58-80 12-34 (180)
382 2fg5_A RAB-22B, RAS-related pr 94.6 0.021 7.2E-07 53.4 3.8 23 58-80 25-47 (192)
383 3tkl_A RAS-related protein RAB 94.6 0.023 7.9E-07 52.8 4.1 23 58-80 18-40 (196)
384 1jbk_A CLPB protein; beta barr 94.6 0.019 6.6E-07 52.7 3.5 27 54-80 41-67 (195)
385 1vg8_A RAS-related protein RAB 94.6 0.023 8E-07 53.4 4.1 23 58-80 10-32 (207)
386 3iby_A Ferrous iron transport 94.6 0.015 5.1E-07 57.8 2.8 23 58-80 3-25 (256)
387 3t1o_A Gliding protein MGLA; G 94.6 0.018 6E-07 53.5 3.2 24 58-81 16-39 (198)
388 3t5d_A Septin-7; GTP-binding p 94.6 0.014 4.7E-07 58.6 2.6 23 58-80 10-32 (274)
389 2gf9_A RAS-related protein RAB 94.5 0.023 8E-07 52.8 4.0 23 58-80 24-46 (189)
390 2xb4_A Adenylate kinase; ATP-b 94.5 0.019 6.4E-07 55.7 3.4 22 58-79 2-23 (223)
391 3iev_A GTP-binding protein ERA 94.5 0.018 6.3E-07 58.8 3.5 23 58-80 12-34 (308)
392 3umf_A Adenylate kinase; rossm 94.5 0.02 6.8E-07 55.6 3.5 27 53-79 26-52 (217)
393 2iwr_A Centaurin gamma 1; ANK 94.5 0.03 1E-06 51.3 4.5 23 58-80 9-31 (178)
394 3cbq_A GTP-binding protein REM 94.5 0.014 4.8E-07 55.1 2.3 22 58-79 25-46 (195)
395 1ksh_A ARF-like protein 2; sma 94.5 0.018 6.1E-07 53.3 3.0 26 55-80 17-42 (186)
396 1nrj_B SR-beta, signal recogni 94.5 0.016 5.6E-07 55.2 2.8 23 58-80 14-36 (218)
397 1a7j_A Phosphoribulokinase; tr 94.5 0.0099 3.4E-07 60.4 1.2 25 55-79 4-28 (290)
398 3be4_A Adenylate kinase; malar 94.4 0.019 6.4E-07 55.3 3.1 24 56-79 5-28 (217)
399 1zbd_A Rabphilin-3A; G protein 94.4 0.031 1.1E-06 52.5 4.6 23 58-80 10-32 (203)
400 1njg_A DNA polymerase III subu 94.4 0.0053 1.8E-07 58.8 -0.9 43 185-229 125-167 (250)
401 2gco_A H9, RHO-related GTP-bin 94.4 0.043 1.5E-06 51.7 5.5 23 58-80 27-49 (201)
402 1mh1_A RAC1; GTP-binding, GTPa 94.4 0.027 9.3E-07 51.7 4.0 22 58-79 7-28 (186)
403 3v9p_A DTMP kinase, thymidylat 94.4 0.017 5.9E-07 56.5 2.7 30 52-81 21-50 (227)
404 2gf0_A GTP-binding protein DI- 94.4 0.03 1E-06 52.2 4.3 23 58-80 10-32 (199)
405 2dby_A GTP-binding protein; GD 94.4 0.017 5.7E-07 60.8 2.8 22 59-80 4-25 (368)
406 2atv_A RERG, RAS-like estrogen 94.4 0.035 1.2E-06 52.0 4.7 23 58-80 30-52 (196)
407 4edh_A DTMP kinase, thymidylat 94.4 0.024 8.3E-07 54.7 3.7 28 54-81 4-31 (213)
408 3a1s_A Iron(II) transport prot 94.3 0.02 7E-07 56.9 3.3 23 58-80 7-29 (258)
409 2g3y_A GTP-binding protein GEM 94.3 0.048 1.6E-06 52.4 5.8 22 58-79 39-60 (211)
410 2f6r_A COA synthase, bifunctio 94.3 0.019 6.5E-07 57.9 3.0 23 56-78 75-97 (281)
411 2xtp_A GTPase IMAP family memb 94.3 0.018 6.3E-07 56.8 2.9 23 58-80 24-46 (260)
412 3bwd_D RAC-like GTP-binding pr 94.3 0.022 7.6E-07 52.2 3.3 23 58-80 10-32 (182)
413 3c5c_A RAS-like protein 12; GD 94.3 0.037 1.3E-06 51.5 4.8 23 58-80 23-45 (187)
414 2il1_A RAB12; G-protein, GDP, 94.3 0.02 6.8E-07 53.6 2.8 23 58-80 28-50 (192)
415 1z06_A RAS-related protein RAB 94.3 0.029 9.8E-07 52.1 3.9 23 58-80 22-44 (189)
416 1x3s_A RAS-related protein RAB 94.3 0.031 1.1E-06 51.8 4.1 23 58-80 17-39 (195)
417 1ltq_A Polynucleotide kinase; 94.2 0.024 8.1E-07 57.3 3.6 22 57-78 3-24 (301)
418 3i8s_A Ferrous iron transport 94.2 0.02 6.8E-07 57.4 2.9 23 58-80 5-27 (274)
419 1zd9_A ADP-ribosylation factor 94.2 0.032 1.1E-06 51.9 4.1 23 58-80 24-46 (188)
420 2cjw_A GTP-binding protein GEM 94.2 0.02 7E-07 53.8 2.8 22 58-79 8-29 (192)
421 1e4v_A Adenylate kinase; trans 94.2 0.022 7.4E-07 54.6 3.0 22 58-79 2-23 (214)
422 1ak2_A Adenylate kinase isoenz 94.2 0.026 9E-07 54.9 3.6 26 55-80 15-40 (233)
423 1gwn_A RHO-related GTP-binding 94.2 0.035 1.2E-06 52.8 4.4 24 58-81 30-53 (205)
424 1jwy_B Dynamin A GTPase domain 94.1 0.021 7.2E-07 58.0 2.8 23 58-80 26-48 (315)
425 4dhe_A Probable GTP-binding pr 94.1 0.013 4.3E-07 56.2 1.1 24 57-80 30-53 (223)
426 2qu8_A Putative nucleolar GTP- 94.1 0.023 7.9E-07 54.8 3.0 23 57-79 30-52 (228)
427 2o52_A RAS-related protein RAB 94.1 0.023 7.7E-07 53.7 2.9 23 58-80 27-49 (200)
428 1zj6_A ADP-ribosylation factor 94.1 0.023 7.8E-07 52.7 2.8 23 57-79 17-39 (187)
429 2wsm_A Hydrogenase expression/ 94.1 0.021 7.3E-07 54.6 2.7 24 57-80 31-54 (221)
430 2h57_A ADP-ribosylation factor 94.1 0.018 6.1E-07 53.6 2.0 23 58-80 23-45 (190)
431 4bas_A ADP-ribosylation factor 94.0 0.024 8.2E-07 52.9 2.9 24 57-80 18-41 (199)
432 3zvl_A Bifunctional polynucleo 94.0 0.025 8.4E-07 60.5 3.3 26 54-79 256-281 (416)
433 2f7s_A C25KG, RAS-related prot 94.0 0.027 9.4E-07 53.6 3.3 23 58-80 27-49 (217)
434 2q3h_A RAS homolog gene family 94.0 0.035 1.2E-06 52.0 4.0 24 57-80 21-44 (201)
435 3dz8_A RAS-related protein RAB 94.0 0.021 7.2E-07 53.3 2.4 23 58-80 25-47 (191)
436 2p65_A Hypothetical protein PF 94.0 0.024 8.1E-07 52.1 2.7 28 54-81 41-68 (187)
437 2h17_A ADP-ribosylation factor 94.0 0.022 7.4E-07 52.7 2.4 22 58-79 23-44 (181)
438 3cph_A RAS-related protein SEC 94.0 0.024 8.2E-07 53.6 2.8 24 57-80 21-44 (213)
439 3lv8_A DTMP kinase, thymidylat 94.0 0.027 9.4E-07 55.3 3.2 27 55-81 26-52 (236)
440 3exa_A TRNA delta(2)-isopenten 94.0 0.032 1.1E-06 57.1 3.8 25 56-80 3-27 (322)
441 2p5s_A RAS and EF-hand domain 93.9 0.025 8.4E-07 53.2 2.8 24 57-80 29-52 (199)
442 3d3q_A TRNA delta(2)-isopenten 93.9 0.028 9.7E-07 58.2 3.4 24 57-80 8-31 (340)
443 2j1l_A RHO-related GTP-binding 93.9 0.037 1.3E-06 52.8 3.9 23 58-80 36-58 (214)
444 3cmu_A Protein RECA, recombina 93.9 0.14 4.9E-06 64.2 10.0 36 43-78 1066-1103(2050)
445 2zts_A Putative uncharacterize 93.9 0.038 1.3E-06 53.6 4.1 44 185-228 134-182 (251)
446 3sr0_A Adenylate kinase; phosp 93.8 0.032 1.1E-06 53.6 3.4 22 58-79 2-23 (206)
447 3cpj_B GTP-binding protein YPT 93.8 0.057 2E-06 51.8 5.2 23 58-80 15-37 (223)
448 2aka_B Dynamin-1; fusion prote 93.8 0.025 8.6E-07 56.8 2.6 23 58-80 28-50 (299)
449 2fv8_A H6, RHO-related GTP-bin 93.7 0.025 8.6E-07 53.6 2.4 23 58-80 27-49 (207)
450 3tmk_A Thymidylate kinase; pho 93.7 0.032 1.1E-06 54.1 3.1 28 54-81 3-30 (216)
451 3ld9_A DTMP kinase, thymidylat 93.7 0.037 1.3E-06 53.9 3.6 28 54-81 19-46 (223)
452 2fu5_C RAS-related protein RAB 93.7 0.02 6.9E-07 52.7 1.6 22 58-79 10-31 (183)
453 4tmk_A Protein (thymidylate ki 93.7 0.034 1.2E-06 53.7 3.3 27 55-81 2-28 (213)
454 3llu_A RAS-related GTP-binding 93.6 0.031 1.1E-06 52.4 2.9 24 58-81 22-45 (196)
455 3euj_A Chromosome partition pr 93.6 0.067 2.3E-06 58.1 5.8 71 166-243 377-464 (483)
456 2fh5_B SR-beta, signal recogni 93.6 0.03 1E-06 53.2 2.8 23 58-80 9-31 (214)
457 2b6h_A ADP-ribosylation factor 93.6 0.027 9.4E-07 52.7 2.5 23 57-79 30-52 (192)
458 1sky_E F1-ATPase, F1-ATP synth 93.6 0.036 1.2E-06 59.8 3.7 35 45-80 141-175 (473)
459 2ocp_A DGK, deoxyguanosine kin 93.6 0.036 1.2E-06 54.2 3.4 27 55-81 1-27 (241)
460 2h92_A Cytidylate kinase; ross 93.6 0.033 1.1E-06 53.3 3.0 25 56-80 3-27 (219)
461 1p5z_B DCK, deoxycytidine kina 93.6 0.026 9E-07 56.0 2.3 28 54-81 22-49 (263)
462 3crm_A TRNA delta(2)-isopenten 93.6 0.037 1.2E-06 57.0 3.4 24 57-80 6-29 (323)
463 3tqf_A HPR(Ser) kinase; transf 93.6 0.058 2E-06 50.3 4.4 35 43-78 4-38 (181)
464 4gzl_A RAS-related C3 botulinu 93.5 0.054 1.9E-06 51.2 4.4 23 57-79 31-53 (204)
465 2atx_A Small GTP binding prote 93.5 0.044 1.5E-06 51.0 3.6 23 58-80 20-42 (194)
466 3def_A T7I23.11 protein; chlor 93.5 0.034 1.1E-06 55.2 2.9 23 58-80 38-60 (262)
467 3q3j_B RHO-related GTP-binding 93.4 0.056 1.9E-06 51.6 4.3 23 58-80 29-51 (214)
468 4djt_A GTP-binding nuclear pro 93.4 0.02 6.7E-07 54.6 1.0 23 58-80 13-35 (218)
469 1h65_A Chloroplast outer envel 93.4 0.035 1.2E-06 55.4 2.8 23 58-80 41-63 (270)
470 3pxi_A Negative regulator of g 93.3 0.11 3.6E-06 59.9 7.1 23 58-80 523-545 (758)
471 3foz_A TRNA delta(2)-isopenten 93.2 0.051 1.8E-06 55.5 3.7 25 56-80 10-34 (316)
472 2r62_A Cell division protease 93.1 0.012 4.1E-07 58.4 -1.0 29 50-80 40-68 (268)
473 3cnl_A YLQF, putative uncharac 93.1 0.041 1.4E-06 54.9 2.8 25 57-81 100-124 (262)
474 2j0v_A RAC-like GTP-binding pr 93.1 0.053 1.8E-06 51.3 3.5 23 58-80 11-33 (212)
475 2x77_A ADP-ribosylation factor 93.0 0.028 9.6E-07 52.1 1.5 22 58-79 24-45 (189)
476 2hf9_A Probable hydrogenase ni 93.0 0.04 1.4E-06 52.8 2.6 24 57-80 39-62 (226)
477 2yc2_C IFT27, small RAB-relate 93.0 0.021 7.1E-07 53.7 0.5 22 58-79 22-43 (208)
478 2hup_A RAS-related protein RAB 93.0 0.04 1.4E-06 52.0 2.4 23 58-80 31-53 (201)
479 1r6b_X CLPA protein; AAA+, N-t 92.9 0.13 4.5E-06 59.0 7.0 23 58-80 490-512 (758)
480 2orw_A Thymidine kinase; TMTK, 92.8 0.057 1.9E-06 50.8 3.2 53 186-243 76-137 (184)
481 3eph_A TRNA isopentenyltransfe 92.8 0.055 1.9E-06 57.3 3.3 25 56-80 2-26 (409)
482 4dcu_A GTP-binding protein ENG 92.7 0.044 1.5E-06 59.2 2.7 53 172-228 88-141 (456)
483 3n70_A Transport activator; si 92.7 0.051 1.8E-06 48.7 2.7 42 186-229 76-117 (145)
484 1ypw_A Transitional endoplasmi 92.5 0.019 6.3E-07 66.7 -0.8 33 49-81 504-536 (806)
485 3gmt_A Adenylate kinase; ssgci 92.4 0.066 2.3E-06 52.3 3.2 23 57-79 9-31 (230)
486 2chg_A Replication factor C sm 92.4 0.066 2.2E-06 50.3 3.1 42 185-228 101-142 (226)
487 3gee_A MNME, tRNA modification 92.3 0.073 2.5E-06 57.8 3.7 25 56-80 233-257 (476)
488 1d2n_A N-ethylmaleimide-sensit 92.1 0.079 2.7E-06 52.6 3.4 26 54-79 62-87 (272)
489 1g5t_A COB(I)alamin adenosyltr 91.9 0.11 3.6E-06 49.6 3.8 71 174-245 106-180 (196)
490 3p32_A Probable GTPase RV1496/ 91.8 0.084 2.9E-06 55.0 3.4 26 55-80 78-103 (355)
491 3r7w_A Gtpase1, GTP-binding pr 91.8 0.091 3.1E-06 53.5 3.5 24 56-79 3-26 (307)
492 1puj_A YLQF, conserved hypothe 91.8 0.089 3E-06 53.0 3.4 26 56-81 120-145 (282)
493 1lw7_A Transcriptional regulat 91.7 0.12 4.2E-06 53.9 4.5 29 168-196 296-329 (365)
494 2x2e_A Dynamin-1; nitration, h 91.7 0.057 2E-06 56.1 1.9 23 58-80 33-55 (353)
495 3t15_A Ribulose bisphosphate c 91.7 0.076 2.6E-06 53.7 2.8 27 54-80 34-60 (293)
496 1wxq_A GTP-binding protein; st 91.6 0.078 2.7E-06 56.2 2.9 42 147-192 180-221 (397)
497 3uk6_A RUVB-like 2; hexameric 91.6 0.086 2.9E-06 54.6 3.2 28 54-81 68-95 (368)
498 3th5_A RAS-related C3 botulinu 90.9 0.034 1.2E-06 52.4 0.0 22 58-79 32-53 (204)
499 3eie_A Vacuolar protein sortin 91.5 0.098 3.3E-06 53.5 3.5 27 54-80 49-75 (322)
500 4a9a_A Ribosome-interacting GT 91.4 0.16 5.4E-06 53.4 4.9 42 58-99 74-121 (376)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.4e-52 Score=436.63 Aligned_cols=225 Identities=22% Similarity=0.351 Sum_probs=201.9
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||+++|.. +.+.+++|+|||+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+
T Consensus 22 ~~mi~v~~ls~~y~~------~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p-----~~G~I~i~G~ 90 (366)
T 3tui_C 22 KHMIKLSNITKVFHQ------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----TEGSVLVDGQ 90 (366)
T ss_dssp -CCEEEEEEEEEEEC------SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTE
T ss_pred CceEEEEeEEEEeCC------CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC-----CceEEEECCE
Confidence 346999999999842 12346799999999999999999999999999999999999986 6899999999
Q ss_pred eccch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChh
Q psy12625 98 RLQDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG 172 (612)
Q Consensus 98 ~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 172 (612)
++... ...|+.+|||||++.+++.+||+||+.++.... ..++++.+++++++++.+||.+..++++.+||||
T Consensus 91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGG 167 (366)
T 3tui_C 91 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGG 167 (366)
T ss_dssp ECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHH
T ss_pred ECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHH
Confidence 97532 234678999999999999999999999987653 3456677889999999999999999999999999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||+|||||+.+|++|||||||||||+.++..++++|+++++ .|+|||++|||++ .+.++||||++|++|++++.|
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g 246 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQD 246 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999976 5999999999976 678899999999999999999
Q ss_pred CccChh
Q psy12625 252 TVPGLV 257 (612)
Q Consensus 252 ~~~~~~ 257 (612)
+++++.
T Consensus 247 ~~~ev~ 252 (366)
T 3tui_C 247 TVSEVF 252 (366)
T ss_dssp BHHHHH
T ss_pred CHHHHH
Confidence 988764
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-51 Score=437.83 Aligned_cols=219 Identities=26% Similarity=0.405 Sum_probs=202.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+++| ++|+|.++|+++
T Consensus 3 ~l~~~~l~~~y----------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAW----------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-----TSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEC
T ss_pred EEEEEeEEEEE----------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC-----CCeEEEECCEEC
Confidence 48999999998 567899999999999999999999999999999999999986 689999999997
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
......++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.+||++..++++.+|||||||||+|
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVai 144 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAI 144 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHH
Confidence 654445678999999999999999999999987654 34567778899999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||||+.+|++|||||||||||+..+.++.+.|+++.+ .|+|+|++|||.. ++..+||||++|++|+++..|+++++.
T Consensus 145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 9999999999999999999999999999999999976 4999999999975 688999999999999999999998864
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=8e-52 Score=436.20 Aligned_cols=219 Identities=26% Similarity=0.377 Sum_probs=198.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++++|+|||+++++||+++|+||||||||||||+|+|+.+| ++|+|.++|+++
T Consensus 4 ~l~i~~ls~~y----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSF----------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP-----DSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEE
T ss_pred EEEEEeEEEEE----------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence 58999999998 567899999999999999999999999999999999999986 689999999987
Q ss_pred c----chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625 100 Q----DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 100 ~----~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 175 (612)
. .....++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.+||++..++++.+|||||||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~Q 145 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQ 145 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHH
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence 2 22345678999999999999999999999875432 2345566788999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
||+|||||+.+|++|||||||||||+..+.++.+.|+++.+ .|+|+|++|||.. ++..+||||++|++|+++..|+++
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999998888754 7999999999976 688999999999999999999998
Q ss_pred Chh
Q psy12625 255 GLV 257 (612)
Q Consensus 255 ~~~ 257 (612)
++.
T Consensus 225 el~ 227 (359)
T 3fvq_A 225 ELY 227 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.6e-51 Score=410.17 Aligned_cols=224 Identities=23% Similarity=0.387 Sum_probs=193.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++|.. +...+++|+|||+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 1 ~l~~~~l~~~y~~------~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~ 69 (235)
T 3tif_A 1 MVKLKNVTKTYKM------GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-----TEGEVYIDNIKT 69 (235)
T ss_dssp CEEEEEEEEEEEE------TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred CEEEEEEEEEeCC------CCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CceEEEECCEEc
Confidence 3789999999842 11235799999999999999999999999999999999999986 689999999987
Q ss_pred cch--H---h-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChh
Q psy12625 100 QDH--R---M-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGG 172 (612)
Q Consensus 100 ~~~--~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgG 172 (612)
... . . .++.+|||+|++.+++.+||+||+.++...+.....++++..+++.++++.+||.+. .++++.+||||
T Consensus 70 ~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 149 (235)
T 3tif_A 70 NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGG 149 (235)
T ss_dssp TTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHH
T ss_pred ccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHH
Confidence 432 1 1 235699999999999999999999998655422234556667889999999999886 49999999999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |+|||++|||+. +.++||++++|++|+++..+
T Consensus 150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREE 227 (235)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999864 999999999975 45899999999999999999
Q ss_pred CccCh
Q psy12625 252 TVPGL 256 (612)
Q Consensus 252 ~~~~~ 256 (612)
++++.
T Consensus 228 ~~~~~ 232 (235)
T 3tif_A 228 KLRGF 232 (235)
T ss_dssp ECC--
T ss_pred Chhhh
Confidence 88764
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.9e-51 Score=415.21 Aligned_cols=219 Identities=26% Similarity=0.413 Sum_probs=196.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++++|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.++|+++
T Consensus 24 ~l~i~~l~~~y----------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p-----~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSF----------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-----DEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTEES
T ss_pred eEEEEeEEEEE----------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCEEC
Confidence 59999999988 456799999999999999999999999999999999999986 689999999986
Q ss_pred c----chHhhccceEEEccCCCCCCCCCHHHHHHHHH-HhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625 100 Q----DHRMLRKESCYIMQDNLLQELLTVEESLTVAA-HLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174 (612)
Q Consensus 100 ~----~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 174 (612)
. +...+++.++||+|++.+++.+||+||+.++. ... ..++++.+++++++++.+||.+..++++.+||||||
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqk 165 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQA 165 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHH
Confidence 3 11345678999999999999999999999864 322 234455567899999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254 (612)
Q Consensus 175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 254 (612)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.|+++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPE 244 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999878999999999975 577899999999999999999887
Q ss_pred Chh
Q psy12625 255 GLV 257 (612)
Q Consensus 255 ~~~ 257 (612)
++.
T Consensus 245 ~~~ 247 (263)
T 2olj_A 245 DLF 247 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.9e-51 Score=418.31 Aligned_cols=222 Identities=28% Similarity=0.397 Sum_probs=196.8
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|. +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|++
T Consensus 6 ~~l~i~~ls~~y~---------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-----~~G~I~~~G~~ 71 (275)
T 3gfo_A 6 YILKVEELNYNYS---------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-----SSGRILFDNKP 71 (275)
T ss_dssp EEEEEEEEEEECT---------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTEE
T ss_pred cEEEEEEEEEEEC---------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CCeEEEECCEE
Confidence 3699999999871 234599999999999999999999999999999999999986 68999999998
Q ss_pred cc--c--hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625 99 LQ--D--HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 99 ~~--~--~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 173 (612)
+. . ...+++.+|||+|++. .+..+||+||+.++.... ..++++.+++++++++.+||++..++++.+|||||
T Consensus 72 i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq 148 (275)
T 3gfo_A 72 IDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQ 148 (275)
T ss_dssp CCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred CCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHH
Confidence 73 1 1346788999999863 344789999999986543 34566677889999999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++|||+. .+.++||++++|++|++++.|+
T Consensus 149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999998 56999999999987 5778999999999999999999
Q ss_pred ccChhh
Q psy12625 253 VPGLVP 258 (612)
Q Consensus 253 ~~~~~~ 258 (612)
++++..
T Consensus 228 ~~~~~~ 233 (275)
T 3gfo_A 228 PKEVFA 233 (275)
T ss_dssp HHHHTH
T ss_pred HHHHhc
Confidence 988754
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.1e-51 Score=414.92 Aligned_cols=219 Identities=24% Similarity=0.370 Sum_probs=195.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~i~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRY----------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----SEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred eEEEeeEEEEE----------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEc
Confidence 59999999988 556799999999999999999999999999999999999986 689999999986
Q ss_pred cc------------h---HhhccceEEEccCCCCCCCCCHHHHHHHHH-HhccCCCCCHHHHHHHHHHHHHHcCCccc-c
Q psy12625 100 QD------------H---RMLRKESCYIMQDNLLQELLTVEESLTVAA-HLKLGNQYSRKAKESKVDSIADSLSISTC-K 162 (612)
Q Consensus 100 ~~------------~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~ 162 (612)
.. . ..+++.+|||+|++.+++.+||+||+.++. ... ..++++.+++++++++.+||.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 1 234678999999999999999999999864 322 23445556789999999999998 9
Q ss_pred CcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242 (612)
Q Consensus 163 ~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 242 (612)
++++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|
T Consensus 148 ~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (262)
T 1b0u_A 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL 226 (262)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999878999999999975 577899999999
Q ss_pred cCCeEEEecCccChh
Q psy12625 243 TEGYCTYQGTVPGLV 257 (612)
Q Consensus 243 ~~G~iv~~G~~~~~~ 257 (612)
++|+++..|+++++.
T Consensus 227 ~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 227 HQGKIEEEGDPEQVF 241 (262)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999887664
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.1e-50 Score=403.65 Aligned_cols=214 Identities=25% Similarity=0.355 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~y----------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVI----------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP-----TEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred EEEEEeEEEEE----------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence 58999999988 456799999999999999999999999999999999999986 689999999987
Q ss_pred cch--H---hhc-cceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625 100 QDH--R---MLR-KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 100 ~~~--~---~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 173 (612)
... . .++ +.++||+|++.+++.+||+||+.++.... ..++++.+++++++++.+||.+..++++++|||||
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 145 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGE 145 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHH
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence 432 1 233 67999999999999999999999876543 23344556789999999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
||||+|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++|||+. .+ ++||++++|++|++++.|+.
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999999999999878999999999965 44 89999999999999998863
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-50 Score=410.55 Aligned_cols=220 Identities=26% Similarity=0.371 Sum_probs=197.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 15 ~l~i~~l~~~y----------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p-----~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRI----------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-----SSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTEET
T ss_pred eEEEEEEEEEE----------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence 69999999988 456799999999999999999999999999999999999986 689999999987
Q ss_pred cc-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 100 QD-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 100 ~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
.. ....++.+|||+|++.+++.+||+||+.+..... ..++++.+++++++++.+||++..++++++|||||||||+
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~ 156 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL 156 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence 43 2345678999999999999999999999875443 1234445577899999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 258 (612)
|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+. .+..+||++++|++|++++.|+++++.+
T Consensus 157 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999999878999999999975 5778899999999999999998877643
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.7e-50 Score=426.20 Aligned_cols=223 Identities=24% Similarity=0.405 Sum_probs=200.9
Q ss_pred CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
....|+++||+++| + +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| ++|+|.++|
T Consensus 11 ~~~~l~~~~l~~~y--------~-g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g 76 (355)
T 1z47_A 11 GSMTIEFVGVEKIY--------P-GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-----TKGDVWIGG 76 (355)
T ss_dssp CCEEEEEEEEEECC--------T-TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----SEEEEEETT
T ss_pred CCceEEEEEEEEEE--------c-CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEECC
Confidence 34579999999876 1 346799999999999999999999999999999999999986 689999999
Q ss_pred EeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 97 ~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
+++.+....++.+|||+|++.+++.+||+||+.|+...+ ..++++.+++++++++.+||++..++++.+||||||||
T Consensus 77 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QR 153 (355)
T 1z47_A 77 KRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQR 153 (355)
T ss_dssp EECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHH
T ss_pred EECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHH
Confidence 997544445678999999999999999999999986543 23456667889999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
|+|||||+.+|++|||||||||||+.++.++.+.|+++++ .|+|+|++|||+. ++..+||++++|++|+++..|++++
T Consensus 154 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~ 232 (355)
T 1z47_A 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEE 232 (355)
T ss_dssp HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999976 4999999999975 6789999999999999999999987
Q ss_pred hh
Q psy12625 256 LV 257 (612)
Q Consensus 256 ~~ 257 (612)
+.
T Consensus 233 l~ 234 (355)
T 1z47_A 233 VY 234 (355)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-50 Score=428.39 Aligned_cols=219 Identities=28% Similarity=0.411 Sum_probs=198.9
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g~~i 67 (362)
T 2it1_A 3 EIKLENIVKKF----------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-----TSGKIYFDEKDV 67 (362)
T ss_dssp CEEEEEEEEES----------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEC
T ss_pred EEEEEeEEEEE----------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence 48999999987 556799999999999999999999999999999999999986 689999999997
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.+....++.+|||+|++.+++.+||+||+.|+...+ ..++++.+++++++++.+||++..++++++|||||||||+|
T Consensus 68 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval 144 (362)
T 2it1_A 68 TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAI 144 (362)
T ss_dssp TTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred CcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHH
Confidence 543334678999999999999999999999986543 23455667889999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||||+.+|++|||||||||||+..+.++.+.|+++++ .|+|+|++|||.. ++..+||++++|++|+++..|+++++.
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999976 4999999999975 678999999999999999999998764
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-50 Score=428.65 Aligned_cols=219 Identities=25% Similarity=0.355 Sum_probs=197.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| ++|+|.++|+++
T Consensus 3 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g~~i 67 (359)
T 2yyz_A 3 SIRVVNLKKYF----------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-----TSGEIYFDDVLV 67 (359)
T ss_dssp CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEC
T ss_pred EEEEEEEEEEE----------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC-----CccEEEECCEEC
Confidence 48999999988 557799999999999999999999999999999999999986 689999999997
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.+....++.+|||+|++.+++.+||+||+.|+...+ ..++++.+++++++++.+||++..++++++|||||||||+|
T Consensus 68 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRval 144 (359)
T 2yyz_A 68 NDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVAL 144 (359)
T ss_dssp TTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 543334678999999999999999999999875332 23344456789999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||||+.+|++|||||||||||+.++.++.+.|+++.+ .|+|+|++|||.. ++..+||++++|++|+++..|+++++.
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999976 4999999999975 678999999999999999999998764
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3e-50 Score=427.93 Aligned_cols=219 Identities=23% Similarity=0.399 Sum_probs=198.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| ++|+|.++|+++
T Consensus 3 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVF----------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-----SRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEE
T ss_pred EEEEEeEEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC-----CccEEEECCEEC
Confidence 58999999988 557799999999999999999999999999999999999986 689999999987
Q ss_pred cc------hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625 100 QD------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173 (612)
Q Consensus 100 ~~------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 173 (612)
.+ ....++.+|||+|++.+++.+||+||+.|+...+ ..++++.+++++++++.+||++..++++++|||||
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq 144 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQ 144 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHH
T ss_pred ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHH
Confidence 44 2234578999999999999999999999986543 23455667889999999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
||||+|||||+.+|++|||||||||||+..+.++.+.|+++.+ .|+|+|++|||+. ++..+||++++|++|+++..|+
T Consensus 145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999999999999976 4999999999975 6789999999999999999999
Q ss_pred ccChh
Q psy12625 253 VPGLV 257 (612)
Q Consensus 253 ~~~~~ 257 (612)
++++.
T Consensus 224 ~~~l~ 228 (372)
T 1g29_1 224 PDEVY 228 (372)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.4e-50 Score=411.20 Aligned_cols=220 Identities=22% Similarity=0.321 Sum_probs=194.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++++|+|||+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|+++
T Consensus 7 ~l~i~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYF----------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-----DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEE----------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred EEEEeeeEEEE----------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEC
Confidence 69999999988 556799999999999999999999999999999999999986 689999999987
Q ss_pred cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHh-ccCC---------CCCHHHHHHHHHHHHHHcCCccccCccc
Q psy12625 100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHL-KLGN---------QYSRKAKESKVDSIADSLSISTCKNTLT 166 (612)
Q Consensus 100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~~ 166 (612)
... ...++.++||+|++.+++.+||+||+.++... ..+. ...+.+.+++++++++.+||++..++++
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 432 23466899999999999999999999886432 1110 0122345677899999999999999999
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+.++||++++|++|+
T Consensus 152 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~ 230 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQ 230 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999999888999999999987 5678999999999999
Q ss_pred EEEecCccC
Q psy12625 247 CTYQGTVPG 255 (612)
Q Consensus 247 iv~~G~~~~ 255 (612)
+++.|++++
T Consensus 231 i~~~g~~~~ 239 (257)
T 1g6h_A 231 IIAEGRGEE 239 (257)
T ss_dssp EEEEEESHH
T ss_pred EEEEeCHHH
Confidence 999998887
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.7e-50 Score=427.34 Aligned_cols=219 Identities=25% Similarity=0.396 Sum_probs=198.1
Q ss_pred eEEEEeEEEEEEeeccccccccccc--cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKD--ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
+|+++||+++| ++++ +|+|+|+++++||+++|+||||||||||||+|+|+.+| ++|+|.++|+
T Consensus 3 ~l~i~~l~~~y----------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g~ 67 (353)
T 1oxx_K 3 RIIVKNVSKVF----------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-----STGELYFDDR 67 (353)
T ss_dssp CEEEEEEEEEE----------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-----SEEEEEETTE
T ss_pred EEEEEeEEEEE----------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEECCE
Confidence 48999999988 4566 99999999999999999999999999999999999986 6899999999
Q ss_pred eccc-----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChh
Q psy12625 98 RLQD-----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG 172 (612)
Q Consensus 98 ~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 172 (612)
++.+ ....++.+|||+|++.+++.+||+||+.|+...+ ..++++.+++++++++.+||++..++++++||||
T Consensus 68 ~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG 144 (353)
T 1oxx_K 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGA 144 (353)
T ss_dssp EEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHH
T ss_pred ECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHH
Confidence 8743 2345678999999999999999999999875432 2345566788999999999999999999999999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
|||||+|||||+.+|++|||||||||||+..+.++.+.|+++++ .|+|+|++|||+. ++..+||++++|++|+++..|
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999976 4999999999975 678999999999999999999
Q ss_pred CccChh
Q psy12625 252 TVPGLV 257 (612)
Q Consensus 252 ~~~~~~ 257 (612)
+++++.
T Consensus 224 ~~~~l~ 229 (353)
T 1oxx_K 224 KPEDLY 229 (353)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998764
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.3e-50 Score=411.32 Aligned_cols=218 Identities=25% Similarity=0.401 Sum_probs=195.9
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.| +++++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++
T Consensus 10 ~~l~~~~l~~~~----------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g~~ 74 (266)
T 4g1u_C 10 ALLEASHLHYHV----------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP-----SHGECHLLGQN 74 (266)
T ss_dssp CEEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC-----SSCEEEETTEE
T ss_pred ceEEEEeEEEEe----------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEE
Confidence 479999999988 567899999999999999999999999999999999999986 58999999999
Q ss_pred ccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 99 LQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 99 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
+... ...++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||.+..++++++||||||||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QR 149 (266)
T 4g1u_C 75 LNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQR 149 (266)
T ss_dssp TTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHH
T ss_pred CCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHH
Confidence 7542 445678999999999988899999998865332 123346788999999999999999999999999999
Q ss_pred HHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625 177 LSIALELLS------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 177 v~ia~aL~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
|+|||||+. +|++|||||||+|||+.++.++++.|++++++ |+|||++|||++ .+.++||++++|++|++++
T Consensus 150 v~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 150 VQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999 99999999999999999999999999999875 679999999976 6788999999999999999
Q ss_pred ecCccChh
Q psy12625 250 QGTVPGLV 257 (612)
Q Consensus 250 ~G~~~~~~ 257 (612)
.|+++++.
T Consensus 229 ~g~~~~~~ 236 (266)
T 4g1u_C 229 CGTPEEVL 236 (266)
T ss_dssp EECHHHHC
T ss_pred EcCHHHHh
Confidence 99998764
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.5e-50 Score=427.91 Aligned_cols=219 Identities=21% Similarity=0.369 Sum_probs=192.0
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g~~i 75 (372)
T 1v43_A 11 EVKLENLTKRF----------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-----TEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEC
T ss_pred eEEEEEEEEEE----------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----CceEEEECCEEC
Confidence 49999999988 556799999999999999999999999999999999999986 689999999997
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
.+....++.+|||+|++.+++.+||+||+.|+...+ ..++++.+++++++++.+||++..++++++|||||||||+|
T Consensus 76 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval 152 (372)
T 1v43_A 76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAV 152 (372)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHH
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 543334678999999999999999999999864332 23455667889999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||||+.+|++|||||||||||+..+.++.+.|+++.++ |+|+|++|||.. ++..+||++++|++|+++..|+++++.
T Consensus 153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999764 999999999975 678999999999999999999998764
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-50 Score=403.47 Aligned_cols=218 Identities=23% Similarity=0.373 Sum_probs=192.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYY----------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-----QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred eEEEEeEEEEE----------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEC
Confidence 69999999988 456799999999999999999999999999999999999986 689999999987
Q ss_pred cch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC-CccccCcccCCCChhhhh
Q psy12625 100 QDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-ISTCKNTLTKHLSGGQKK 175 (612)
Q Consensus 100 ~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerq 175 (612)
... .. .++.++||+|++.+++.+||+||+.++.... ..+++.+++++++++.++ |.+..++++++|||||||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~q 146 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQ 146 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHH
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHH
Confidence 432 22 3456999999999999999999998853211 122344567889999995 999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 255 (612)
||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||+. ++.++||++++|++|++++.|++++
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999999878999999999975 5788999999999999999998876
Q ss_pred hh
Q psy12625 256 LV 257 (612)
Q Consensus 256 ~~ 257 (612)
+.
T Consensus 226 ~~ 227 (240)
T 1ji0_A 226 LL 227 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.8e-50 Score=421.77 Aligned_cols=214 Identities=27% Similarity=0.401 Sum_probs=193.8
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||+++| +++ +|+|+|+++++||+++|+||||||||||||+|+|+.+| ++|+|.++|+++.
T Consensus 2 l~~~~l~~~y----------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW----------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-----DSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC----------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-----SEEEEEETTEECT
T ss_pred EEEEEEEEEE----------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCEECC
Confidence 7899999987 456 99999999999999999999999999999999999986 6899999999975
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
+....++.+|||+|++.+++.+||+||+.|+...+. .++. ++++++++.+||++..++++++|||||||||+||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA 139 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALA 139 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 444456789999999999999999999999865431 1122 6789999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|||+.+|++|+|||||||||+.++.++.+.|+++++ .|+|+|++|||+. ++..+||++++|++|+++..|+++++.
T Consensus 140 raL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 140 RALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999976 5999999999975 678999999999999999999998764
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-49 Score=399.11 Aligned_cols=213 Identities=23% Similarity=0.367 Sum_probs=189.2
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||+++| ++ +|+|+|+++++ |+++|+||||||||||||+|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~y----------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRL----------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP-----DRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEE----------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTEECT
T ss_pred EEEEEEEEEe----------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECC
Confidence 6889999987 33 49999999999 99999999999999999999999986 6899999999875
Q ss_pred chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
.....++.+|||+|++.+++.+||+||+.++.... .....+++++++++.+||.+..++++++|||||||||+||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA 138 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence 43345678999999999999999999998753221 1122357789999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
|||+.+|++++|||||+|||+.++..+++.|+++++ +|+|||++|||+. ++.++||++++|++|++++.|+++++.
T Consensus 139 ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999976 4999999999975 578899999999999999999887664
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-49 Score=402.57 Aligned_cols=220 Identities=25% Similarity=0.363 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEEeeccccccccc---cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKS---KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
+|+++||+++|. .++ +++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|
T Consensus 2 ~l~~~~l~~~y~--------~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----~~G~I~~~g 68 (266)
T 2yz2_A 2 RIEVVNVSHIFH--------RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-----TSGDVLYDG 68 (266)
T ss_dssp CEEEEEEEEEES--------TTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETT
T ss_pred EEEEEEEEEEec--------CCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCcEEEECC
Confidence 589999999882 012 5799999999999999999999999999999999999986 689999999
Q ss_pred EeccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc--cccCcccCCCChhh
Q psy12625 97 TRLQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS--TCKNTLTKHLSGGQ 173 (612)
Q Consensus 97 ~~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~~~~LSgGe 173 (612)
+++... .+++.+|||+|++ ..++.+||+||+.++.... .++++.+++++++++.+||. +..++++++|||||
T Consensus 69 ~~~~~~-~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq 143 (266)
T 2yz2_A 69 ERKKGY-EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGE 143 (266)
T ss_dssp EECCHH-HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHH
T ss_pred EECchH-HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHH
Confidence 986543 5677899999995 5667799999998864321 11222346789999999999 89999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||+. .+..+||++++|++|++++.|++
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999877999999999987 46778999999999999999988
Q ss_pred cChhh
Q psy12625 254 PGLVP 258 (612)
Q Consensus 254 ~~~~~ 258 (612)
+++..
T Consensus 223 ~~~~~ 227 (266)
T 2yz2_A 223 MEFLE 227 (266)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77643
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9.1e-49 Score=396.36 Aligned_cols=219 Identities=25% Similarity=0.288 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC--CCCCCCCCceeEEEECCE
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY--RRPKKTETNSGYIEINET 97 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~--~~p~~~~~~~G~I~~~g~ 97 (612)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||+|+|+|+ .+| .+|+|.++|+
T Consensus 3 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p-----~~G~I~~~g~ 67 (250)
T 2d2e_A 3 QLEIRDLWASI----------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-----ERGEILLDGE 67 (250)
T ss_dssp EEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE-----EEEEEEETTE
T ss_pred eEEEEeEEEEE----------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----CceEEEECCE
Confidence 58999999988 456799999999999999999999999999999999998 554 7999999999
Q ss_pred eccch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-ccccCcccCC-CChh
Q psy12625 98 RLQDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-STCKNTLTKH-LSGG 172 (612)
Q Consensus 98 ~~~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~~~-LSgG 172 (612)
++... .. .++.++||+|++.+++.+||+||+.+.............+.+++++++++.+|| .+..++++++ ||||
T Consensus 68 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgG 147 (250)
T 2d2e_A 68 NILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGG 147 (250)
T ss_dssp ECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----
T ss_pred ECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHH
Confidence 87432 22 245699999999999999999999886532111112233445678999999999 5889999999 9999
Q ss_pred hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-ccceeeecCCeEEEec
Q psy12625 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM-ADYLYVLTEGYCTYQG 251 (612)
Q Consensus 173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G 251 (612)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+. .+..+ ||++++|++|++++.|
T Consensus 148 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g 226 (250)
T 2d2e_A 148 EKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATG 226 (250)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999777999999999986 45666 5999999999999999
Q ss_pred Ccc
Q psy12625 252 TVP 254 (612)
Q Consensus 252 ~~~ 254 (612)
+++
T Consensus 227 ~~~ 229 (250)
T 2d2e_A 227 GPE 229 (250)
T ss_dssp SHH
T ss_pred CHH
Confidence 887
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.3e-49 Score=403.74 Aligned_cols=224 Identities=24% Similarity=0.370 Sum_probs=190.8
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||+++| +++++|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.++|+
T Consensus 19 ~~~l~~~~l~~~y----------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----~~G~I~~~g~ 83 (279)
T 2ihy_A 19 HMLIQLDQIGRMK----------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-----TSGTVNLFGK 83 (279)
T ss_dssp CEEEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTB
T ss_pred CceEEEEeEEEEE----------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCeEEEECCE
Confidence 3469999999988 456799999999999999999999999999999999999986 6899999998
Q ss_pred ecc--c--hHhhccceEEEccCCCCC--CCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCC
Q psy12625 98 RLQ--D--HRMLRKESCYIMQDNLLQ--ELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLS 170 (612)
Q Consensus 98 ~~~--~--~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS 170 (612)
++. . ...+++.++||+|++.++ +.+||+||+.++...... .....++.+++++++++.+||++..++++++||
T Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 163 (279)
T 2ihy_A 84 MPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLS 163 (279)
T ss_dssp CCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred EcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCC
Confidence 864 2 234677899999997643 356999999875321000 011123445678999999999999999999999
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCchHHHhcccceeeecCCeEE
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI--ICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv--i~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++|||+. ++.++||++++|++|+++
T Consensus 164 gGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~ 242 (279)
T 2ihy_A 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSI 242 (279)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998779999 99999976 567899999999999999
Q ss_pred EecCccChh
Q psy12625 249 YQGTVPGLV 257 (612)
Q Consensus 249 ~~G~~~~~~ 257 (612)
+.|+++++.
T Consensus 243 ~~g~~~~~~ 251 (279)
T 2ihy_A 243 QQGAVEDIL 251 (279)
T ss_dssp EEEEHHHHC
T ss_pred EECCHHHHh
Confidence 999887653
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.9e-47 Score=390.16 Aligned_cols=233 Identities=24% Similarity=0.280 Sum_probs=193.1
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||+++| +++++|+|||+++++||+++|+||||||||||+|+|+|+.+. .+.+|+|.++|+
T Consensus 18 ~~~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~---~p~~G~I~~~g~ 84 (267)
T 2zu0_C 18 SHMLSIKDLHVSV----------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY---EVTGGTVEFKGK 84 (267)
T ss_dssp --CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC---EEEEEEEEETTE
T ss_pred CceEEEEeEEEEE----------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCCeEEEECCE
Confidence 3369999999988 457799999999999999999999999999999999998521 137899999999
Q ss_pred eccch--Hhh-ccceEEEccCCCCCCCCCHHHHHHHHHH-hc--cC-CCCCHHHHHHHHHHHHHHcCCc-cccCcccC-C
Q psy12625 98 RLQDH--RML-RKESCYIMQDNLLQELLTVEESLTVAAH-LK--LG-NQYSRKAKESKVDSIADSLSIS-TCKNTLTK-H 168 (612)
Q Consensus 98 ~~~~~--~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-l~--~~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~ 168 (612)
++... ... ++.++||+|++.+++.+||.||+.+... .. .. ...++++.+++++++++.+||. +..++++. +
T Consensus 85 ~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~ 164 (267)
T 2zu0_C 85 DLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVG 164 (267)
T ss_dssp EGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTT
T ss_pred ECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 86432 222 3469999999999999999999987542 21 11 1223444567889999999996 57889987 5
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-ccceeeecCCeE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM-ADYLYVLTEGYC 247 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~i 247 (612)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+. .+..+ ||++++|++|++
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i 243 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRI 243 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999777999999999976 45555 899999999999
Q ss_pred EEecCccChhhHHhhcCC
Q psy12625 248 TYQGTVPGLVPYLSDFGY 265 (612)
Q Consensus 248 v~~G~~~~~~~~f~~~g~ 265 (612)
++.|+++++.. ++..|+
T Consensus 244 ~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 244 VKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEEECTTHHHH-HHTTTC
T ss_pred EEEcCHHHHhh-hhhcch
Confidence 99999876542 344443
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.9e-47 Score=387.11 Aligned_cols=210 Identities=23% Similarity=0.347 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 20 NLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
.|+++||+++| + ++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.
T Consensus 4 ~l~i~~l~~~y----------~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~I~----- 63 (253)
T 2nq2_C 4 ALSVENLGFYY----------QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-----IQGKIE----- 63 (253)
T ss_dssp EEEEEEEEEEE----------TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC-----SEEEEE-----
T ss_pred eEEEeeEEEEe----------CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEE-----
Confidence 58999999988 4 56799999999999999999999999999999999999986 689997
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
.++.++||+|++.+++.+||+||+.++....... .....+.+++++++++.+||.+..++++++|||||||||
T Consensus 64 ------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 64 ------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp ------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred ------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHH
Confidence 2457999999999999999999998864321110 011234457789999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||++ .+.++||++++|++|+ ++.|+++++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999999999999999999999999999999999876 999999999975 5778999999999999 999988765
Q ss_pred h
Q psy12625 257 V 257 (612)
Q Consensus 257 ~ 257 (612)
.
T Consensus 216 ~ 216 (253)
T 2nq2_C 216 L 216 (253)
T ss_dssp C
T ss_pred h
Confidence 3
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.7e-48 Score=396.20 Aligned_cols=220 Identities=23% Similarity=0.347 Sum_probs=186.1
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++.|.. .+++++|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.++|++
T Consensus 15 ~~l~~~~l~~~y~~-------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-----~~G~I~~~g~~ 82 (271)
T 2ixe_A 15 GLVKFQDVSFAYPN-------HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP-----TGGKVLLDGEP 82 (271)
T ss_dssp CCEEEEEEEECCTT-------CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEE
T ss_pred ceEEEEEEEEEeCC-------CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCCEEEECCEE
Confidence 36999999988710 0126799999999999999999999999999999999999986 68999999998
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCC-HH----HHHHHHHHHHHHc--CCccccCcccCCC
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS-RK----AKESKVDSIADSL--SISTCKNTLTKHL 169 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~-~~----~~~~~v~~~l~~l--gL~~~~~~~~~~L 169 (612)
+.. ...+++.++||+|++.+++ .||+||+.++.... .. ++ .....++++++.+ |+++..++++.+|
T Consensus 83 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~L 157 (271)
T 2ixe_A 83 LVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157 (271)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTS
T ss_pred cccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCC
Confidence 743 2345678999999999887 59999998753211 11 11 1223456788888 7888899999999
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++|||+. .+ ..||++++|++|+++
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKEGSVC 235 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999875 5899999999975 34 469999999999999
Q ss_pred EecCccChh
Q psy12625 249 YQGTVPGLV 257 (612)
Q Consensus 249 ~~G~~~~~~ 257 (612)
..|+++++.
T Consensus 236 ~~g~~~~l~ 244 (271)
T 2ixe_A 236 EQGTHLQLM 244 (271)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999987764
No 27
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=7.4e-48 Score=399.20 Aligned_cols=214 Identities=26% Similarity=0.400 Sum_probs=180.8
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||++.|. +++.+|+|||+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|+
T Consensus 51 ~~~i~~~~vs~~y~---------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-----~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA---------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI-----SSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS---------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC-----SEEEEEETTE
T ss_pred CCeEEEEEEEEEcC---------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-----CCcEEEECCE
Confidence 34699999999872 246799999999999999999999999999999999999986 6899999999
Q ss_pred eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc-----------CCccccCc
Q psy12625 98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL-----------SISTCKNT 164 (612)
Q Consensus 98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-----------gL~~~~~~ 164 (612)
++.+. ..+|+.+|||+|++.+|+ .||+||+.++... ... +++++.++.. |++...++
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 97543 557889999999999986 6999999875321 122 2233333433 44555566
Q ss_pred ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
...+|||||||||+|||||+.+|+|||||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ .+. .||+|++|++
T Consensus 187 ~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~~-~aD~i~vl~~ 263 (306)
T 3nh6_A 187 RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TVV-NADQILVIKD 263 (306)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HHH-TCSEEEEEET
T ss_pred CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HHH-cCCEEEEEEC
Confidence 6778999999999999999999999999999999999999999999999864 689999999976 454 5999999999
Q ss_pred CeEEEecCccChhh
Q psy12625 245 GYCTYQGTVPGLVP 258 (612)
Q Consensus 245 G~iv~~G~~~~~~~ 258 (612)
|++++.|+++++..
T Consensus 264 G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 264 GCIVERGRHEALLS 277 (306)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999988754
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.2e-47 Score=384.22 Aligned_cols=209 Identities=26% Similarity=0.382 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++ ++|+|+|+++++||+++|+||||||||||||+|+|+++| . |+|.++|+++
T Consensus 4 ~l~~~~l~~~--------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----~-G~i~~~g~~~ 63 (249)
T 2qi9_C 4 VMQLQDVAES--------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-----K-GSIQFAGQPL 63 (249)
T ss_dssp EEEEEEEEET--------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----E-EEEEETTEEG
T ss_pred EEEEEceEEE--------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----C-eEEEECCEEC
Confidence 5889998752 589999999999999999999999999999999999985 7 9999999986
Q ss_pred cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
.. ...+++.++||+|++.+++.+||+||+.++.. . ... +++++++++.+||++..++++.+|||||||||
T Consensus 64 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv 135 (249)
T 2qi9_C 64 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRV 135 (249)
T ss_dssp GGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred CcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 43 24456789999999999999999999987421 1 111 46788999999999999999999999999999
Q ss_pred HHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625 178 SIALELLSNPS-------IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 178 ~ia~aL~~~p~-------illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
+|||||+.+|+ +|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999 99999999999999999999999999877999999999975 56789999999999999999
Q ss_pred cCccChh
Q psy12625 251 GTVPGLV 257 (612)
Q Consensus 251 G~~~~~~ 257 (612)
|+++++.
T Consensus 215 g~~~~~~ 221 (249)
T 2qi9_C 215 GRREEVL 221 (249)
T ss_dssp EEHHHHS
T ss_pred CCHHHHh
Confidence 9887653
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.8e-47 Score=384.62 Aligned_cols=213 Identities=28% Similarity=0.420 Sum_probs=180.2
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++++||+++|+ .+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++
T Consensus 6 ~~~~~~~l~~~y~--------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK--------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-----ENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS--------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEE
T ss_pred CceeEEEEEEEeC--------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEE
Confidence 4799999998861 1246799999999999999999999999999999999999986 68999999998
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-----------Ccc
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-----------NTL 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~ 165 (612)
+.. ...+++.++||+|++.+++ .||+||+.++. + ... +++++++++.+|+.+.. +++
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 753 2345678999999999887 69999998742 1 112 23456666766665443 445
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||++. .+ ..||++++|++|
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G 219 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKG 219 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999995 6899999999986 34 569999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
++++.|+++++.
T Consensus 220 ~i~~~g~~~~l~ 231 (247)
T 2ff7_A 220 KIVEQGKHKELL 231 (247)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEECCHHHHH
Confidence 999999887663
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4e-47 Score=374.82 Aligned_cols=203 Identities=20% Similarity=0.306 Sum_probs=178.2
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
+..|+++||+++| ++ ++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+
T Consensus 8 ~~~l~~~~ls~~y----------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-----~~G~I~~~g~ 71 (214)
T 1sgw_A 8 GSKLEIRDLSVGY----------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-----LKGEIIYNGV 71 (214)
T ss_dssp -CEEEEEEEEEES----------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTE
T ss_pred CceEEEEEEEEEe----------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCE
Confidence 4579999999987 44 799999999999999999999999999999999999986 6899999999
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
++. ..++.++||+|++.+++.+||+||+.++..... .. .+ +++++++++.+||++. ++++.+|||||||||
T Consensus 72 ~~~---~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv 142 (214)
T 1sgw_A 72 PIT---KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRV 142 (214)
T ss_dssp EGG---GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHH
T ss_pred Ehh---hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHH
Confidence 864 357789999999999999999999998754421 11 12 4678899999999988 999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
+|||||+.+|++++|||||+|||+.++..+++.|++++++|+|||++|||+. .+..++|++++++ |++
T Consensus 143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS-TKI 210 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB-C--
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC-Ccc
Confidence 9999999999999999999999999999999999999877899999999987 5778889988664 443
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-46 Score=380.81 Aligned_cols=212 Identities=23% Similarity=0.247 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
+|+++||+++|.. ..+.+++|+|+|++++ ||+++|+||||||||||||+|+|+. | .+|+|.++|+++
T Consensus 1 ml~~~~l~~~y~~------~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-----~~G~I~~~g~~~ 67 (263)
T 2pjz_A 1 MIQLKNVGITLSG------KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-----YSGNIFINGMEV 67 (263)
T ss_dssp CEEEEEEEEEEEE------ETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-----CEEEEEETTEEG
T ss_pred CEEEEEEEEEeCC------CCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-----CCcEEEECCEEC
Confidence 3789999999831 0012679999999999 9999999999999999999999999 7 589999999986
Q ss_pred cchHhhccceE-EEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhhHH
Q psy12625 100 QDHRMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 100 ~~~~~~~~~i~-yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv 177 (612)
..... ++.++ |++|++.+ .+||+||+.+..... .. .+++++++++.+||+ +..++++++|||||||||
T Consensus 68 ~~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv 137 (263)
T 2pjz_A 68 RKIRN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV 137 (263)
T ss_dssp GGCSC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH
T ss_pred cchHH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 43222 66899 99999887 799999999875432 11 245688999999999 999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc-ceeeecCCeEEEecCccCh
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD-YLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D-~v~~L~~G~iv~~G~~~~~ 256 (612)
+|||||+.+|++++|||||+|||+.++..+.+.|+++++ |||++|||+. .+.++|| ++++|++|++++.|+++++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999998854 9999999976 5678999 9999999999999998876
Q ss_pred hh
Q psy12625 257 VP 258 (612)
Q Consensus 257 ~~ 258 (612)
.+
T Consensus 214 ~~ 215 (263)
T 2pjz_A 214 LE 215 (263)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=8.8e-47 Score=380.27 Aligned_cols=211 Identities=28% Similarity=0.449 Sum_probs=180.5
Q ss_pred EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
|+++||+++| + +++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~y--------~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAY--------D-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-----TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECS--------S-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-----SBSCEEETTEEST
T ss_pred EEEEEEEEEe--------C-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEhh
Confidence 7899999876 1 346799999999999999999999999999999999999986 6899999999874
Q ss_pred ch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc-----------ccC
Q psy12625 101 DH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT-----------LTK 167 (612)
Q Consensus 101 ~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~~~ 167 (612)
.. ..+++.++||+|++.+++ .||+||+.++.. + ... +++++++++.+|+.+..++ ++.
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~ 138 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGV 138 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSB
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcC
Confidence 32 345678999999999887 599999976421 1 112 2457788888888766544 457
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++|||+. .+ ..||++++|++|++
T Consensus 139 ~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i 215 (243)
T 1mv5_A 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQI 215 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999999997 6999999999975 44 56999999999999
Q ss_pred EEecCccChh
Q psy12625 248 TYQGTVPGLV 257 (612)
Q Consensus 248 v~~G~~~~~~ 257 (612)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (243)
T 1mv5_A 216 TGSGKHNELV 225 (243)
T ss_dssp CCCSCHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999887664
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.2e-45 Score=375.37 Aligned_cols=213 Identities=24% Similarity=0.367 Sum_probs=178.5
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|.. ...+++|+|+|+++++||+++|+||||||||||+|+|+|+++| +|+|.++|++
T Consensus 16 ~~l~i~~l~~~y~~-------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~G~I~i~g~~ 82 (260)
T 2ghi_A 16 VNIEFSDVNFSYPK-------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA------EGDIKIGGKN 82 (260)
T ss_dssp CCEEEEEEEECCTT-------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC------EEEEEETTEE
T ss_pred CeEEEEEEEEEeCC-------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC------CeEEEECCEE
Confidence 36999999998721 0125699999999999999999999999999999999999863 6999999998
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-----------cCcc
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-----------KNTL 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~ 165 (612)
+.. ...+++.++||+|++.+++ .||+||+.++. . ... ++++.+.++.+++.+. .+++
T Consensus 83 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~---~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~ 152 (260)
T 2ghi_A 83 VNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK---L--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK 152 (260)
T ss_dssp GGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC---T--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS
T ss_pred hhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC---C--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC
Confidence 743 2446788999999999886 69999998742 1 111 2345667777776543 2456
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ |+|||++|||+.. + ..||++++|++|
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G 229 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKG 229 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETT
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECC
Confidence 789999999999999999999999999999999999999999999999965 8999999999863 4 569999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
+++..|+++++.
T Consensus 230 ~i~~~g~~~~l~ 241 (260)
T 2ghi_A 230 KIVEKGTHKDLL 241 (260)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEECCHHHHH
Confidence 999999987764
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=394.06 Aligned_cols=213 Identities=21% Similarity=0.254 Sum_probs=186.4
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||+++|. .+++.+|+|||+++++||+++|+||||||||||||+|+|+.+ .+|+|.++|+
T Consensus 17 ~~~i~~~~l~~~y~--------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~ 82 (390)
T 3gd7_A 17 GGQMTVKDLTAKYT--------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGV 82 (390)
T ss_dssp SCCEEEEEEEEESS--------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSC
T ss_pred CCeEEEEEEEEEec--------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCE
Confidence 45799999999872 245789999999999999999999999999999999999975 5799999999
Q ss_pred eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCC-------
Q psy12625 98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH------- 168 (612)
Q Consensus 98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~------- 168 (612)
++.+. ..+++.++||+|++.+|+ +||+||+.+. ... .+++++++++.+||.+..++++.+
T Consensus 83 ~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~------~~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~ 151 (390)
T 3gd7_A 83 SWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPN------AAH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151 (390)
T ss_dssp BTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTT------CCS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECT
T ss_pred ECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhc------ccc----CHHHHHHHHHHhCCHHHHhhccccccccccc
Confidence 87542 446788999999999998 6999998531 111 235678899999999999999988
Q ss_pred ----CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 169 ----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 169 ----LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++. +++|+|++|||.. ....||||++|++
T Consensus 152 ~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~ 228 (390)
T 3gd7_A 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE 228 (390)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999864 5799999999974 3567999999999
Q ss_pred CeEEEecCccChhh
Q psy12625 245 GYCTYQGTVPGLVP 258 (612)
Q Consensus 245 G~iv~~G~~~~~~~ 258 (612)
|+++..|+++++..
T Consensus 229 G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 229 NKVRQYDSILELYH 242 (390)
T ss_dssp TEEEEESSHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999988743
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.3e-44 Score=361.22 Aligned_cols=200 Identities=23% Similarity=0.331 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++| +.+++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|
T Consensus 6 ~l~~~~l~~~y--------~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFW--------EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECS--------STTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEECS---
T ss_pred eEEEEEEEEEe--------CCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-----CccEEEECC---
Confidence 69999999876 22356799999999999999999999999999999999999986 689999998
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-----------cCcccCC
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-----------KNTLTKH 168 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~ 168 (612)
.++|++|++.+++. ||+||+.++.. ... .+.++.++.+++.+. .++++.+
T Consensus 70 --------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 130 (229)
T 2pze_A 70 --------RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 130 (229)
T ss_dssp --------CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTT
T ss_pred --------EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCc
Confidence 38999999999885 99999987421 111 123334444554432 2334679
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL-LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
|||||||||+|||||+.+|++++|||||+|||+.++..+++. +++++ +|+|||++|||+. .+ ..||++++|++|++
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSS 207 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999997 45654 4899999999975 44 46999999999999
Q ss_pred EEecCccChh
Q psy12625 248 TYQGTVPGLV 257 (612)
Q Consensus 248 v~~G~~~~~~ 257 (612)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999887664
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.9e-44 Score=361.72 Aligned_cols=203 Identities=22% Similarity=0.301 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||+++|. .+++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|
T Consensus 3 ~l~~~~l~~~y~--------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g--- 66 (237)
T 2cbz_A 3 SITVRNATFTWA--------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-----VEGHVAIKG--- 66 (237)
T ss_dssp CEEEEEEEEESC--------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE-----EEEEEEECS---
T ss_pred eEEEEEEEEEeC--------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECC---
Confidence 489999999871 1246799999999999999999999999999999999999986 689999998
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHH---HHHHcCCc-----cccCcccCCCCh
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS---IADSLSIS-----TCKNTLTKHLSG 171 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~---~l~~lgL~-----~~~~~~~~~LSg 171 (612)
.++||+|++.+ +.+||+||+.++... .++ ..+++.+ +.+.+++. ...++++.+|||
T Consensus 67 --------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSg 130 (237)
T 2cbz_A 67 --------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP-YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSG 130 (237)
T ss_dssp --------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT-HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCH
T ss_pred --------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH-HHHHHHHHHhhHHHHHhccccccccccCCCCCCCH
Confidence 38999999865 578999999875311 111 1111111 22233332 235778899999
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR---DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~---~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
||||||+|||||+.+|++++|||||+|||+.++..+++.|+ +++ +|+|||++|||++. + ..||++++|++|+++
T Consensus 131 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 131 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKIS 207 (237)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999995 443 58999999999864 4 579999999999999
Q ss_pred EecCccChh
Q psy12625 249 YQGTVPGLV 257 (612)
Q Consensus 249 ~~G~~~~~~ 257 (612)
..|+++++.
T Consensus 208 ~~g~~~~~~ 216 (237)
T 2cbz_A 208 EMGSYQELL 216 (237)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999987764
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-44 Score=407.57 Aligned_cols=219 Identities=23% Similarity=0.367 Sum_probs=183.5
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++|++++|+ .+++++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.+||+
T Consensus 339 ~~~i~~~~v~~~y~--------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~i~g~ 405 (587)
T 3qf4_A 339 EGSVSFENVEFRYF--------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP-----ERGRVEVDEL 405 (587)
T ss_dssp CCCEEEEEEEECSS--------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC-----SEEEEEESSS
T ss_pred CCcEEEEEEEEEcC--------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEECCE
Confidence 34799999999872 2456799999999999999999999999999999999999986 6899999999
Q ss_pred eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHc--CCccccCcccCC
Q psy12625 98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSL--SISTCKNTLTKH 168 (612)
Q Consensus 98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~ 168 (612)
++.+. +.+|++++||+|++.+++. ||+||+.++.. ..++++..+ .+.+.++.+ |++...+++..+
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~ 479 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN 479 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCS
T ss_pred EcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCC
Confidence 97543 5578899999999999975 99999976421 122222111 122333433 566667778889
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
||||||||++|||||+.+|++++||||||+||+.++.++.+.|+++. +|+|+|+++|+++ . ...||+|++|++|+++
T Consensus 480 LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~i~ 556 (587)
T 3qf4_A 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-T-ALLADKILVLHEGKVA 556 (587)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-H-HTTSSEEEEEETTEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-H-HHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999985 5899999999986 3 4689999999999999
Q ss_pred EecCccChhh
Q psy12625 249 YQGTVPGLVP 258 (612)
Q Consensus 249 ~~G~~~~~~~ 258 (612)
+.|+++++.+
T Consensus 557 ~~g~~~el~~ 566 (587)
T 3qf4_A 557 GFGTHKELLE 566 (587)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999988754
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.4e-44 Score=404.38 Aligned_cols=215 Identities=28% Similarity=0.371 Sum_probs=180.9
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++|++++|+ .+++++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.+||+
T Consensus 337 ~~~i~~~~v~~~y~--------~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYN--------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-----TSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSC--------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-----SEEEEEETTE
T ss_pred CCeEEEEEEEEEcC--------CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC-----CCcEEEECCE
Confidence 34799999999873 2456799999999999999999999999999999999999986 6899999999
Q ss_pred eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-----------ccccCc
Q psy12625 98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-----------STCKNT 164 (612)
Q Consensus 98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~ 164 (612)
++.+ .+.+|+.++||+|++.+++. ||+||+.++. + ..++ +++.+.++..++ +...++
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 9754 25578899999999999975 9999998752 1 1122 334455555544 333444
Q ss_pred ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+..+||||||||++|||||+.+|++++|||||||||+.++..+.+.++++. +++|+|+++|+++. + +.||++++|++
T Consensus 474 ~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 550 (578)
T 4a82_A 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIEN 550 (578)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEET
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 556899999999999999999999999999999999999999999999885 47899999999874 4 66999999999
Q ss_pred CeEEEecCccChhh
Q psy12625 245 GYCTYQGTVPGLVP 258 (612)
Q Consensus 245 G~iv~~G~~~~~~~ 258 (612)
|++++.|+++++.+
T Consensus 551 G~i~~~g~~~el~~ 564 (578)
T 4a82_A 551 GHIVETGTHRELIA 564 (578)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999988753
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.7e-43 Score=399.20 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|+. +++++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.+||++
T Consensus 340 ~~i~~~~v~~~y~~--------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG--------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV-----DSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC--------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCCEEEECCEE
Confidence 46999999999821 236799999999999999999999999999999999999986 68999999998
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccC-----------cc
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN-----------TL 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~ 165 (612)
+.+ ...+|+.++||+|++.+++ .||+||+.++.. + ..+ +++++++++.+|+.+..+ +.
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 753 3457889999999999987 599999987531 1 112 345667777776655433 34
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
..+||||||||++|||||+.+|++++||||||+||+.++..+.+.|+++.+ |+|+|+++|+++ .+ +.||++++|++|
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G 554 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEG 554 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999999864 899999999986 34 579999999999
Q ss_pred eEEEecCccChh
Q psy12625 246 YCTYQGTVPGLV 257 (612)
Q Consensus 246 ~iv~~G~~~~~~ 257 (612)
++++.|+++++.
T Consensus 555 ~i~~~g~~~~l~ 566 (582)
T 3b5x_A 555 EIIERGRHADLL 566 (582)
T ss_pred EEEEECCHHHHH
Confidence 999999988764
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.5e-43 Score=397.53 Aligned_cols=217 Identities=28% Similarity=0.411 Sum_probs=181.9
Q ss_pred ee-EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 19 FN-LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 19 ~~-l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
.. |+++||+++|+. ..++++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.+||+
T Consensus 339 ~~~i~~~~v~~~y~~-------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-----~~G~i~~~g~ 406 (595)
T 2yl4_A 339 QGALEFKNVHFAYPA-------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP-----ASGTISLDGH 406 (595)
T ss_dssp CCCEEEEEEEEECSS-------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC-----SEEEEEETTE
T ss_pred CCeEEEEEEEEEeCC-------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCcEEEECCE
Confidence 35 999999998821 1135699999999999999999999999999999999999986 6899999999
Q ss_pred eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-------Ccc---
Q psy12625 98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-------NTL--- 165 (612)
Q Consensus 98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~--- 165 (612)
++.+ ...+|+.++||+|++.+++ .||+||+.++.... ... .+++++++++.+|+.+.. |+.
T Consensus 407 ~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~ 479 (595)
T 2yl4_A 407 DIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSV----TAEEIQRVAEVANAVAFIRNFPQGFNTVVGE 479 (595)
T ss_dssp ETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTS----CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSS
T ss_pred EhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--ccc----CHHHHHHHHHHcCCHHHHHhCcccccccccC
Confidence 9754 2456788999999999987 59999998753110 011 235577888888875432 333
Q ss_pred -cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 166 -TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 166 -~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
..+||||||||++|||||+.+|++++||||||+||+.++..+.+.|+++.+ |+|+|+++|+++ .+ +.||++++|++
T Consensus 480 ~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~ 556 (595)
T 2yl4_A 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQ 556 (595)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEET
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEEC
Confidence 378999999999999999999999999999999999999999999999976 799999999975 34 56999999999
Q ss_pred CeEEEecCccChh
Q psy12625 245 GYCTYQGTVPGLV 257 (612)
Q Consensus 245 G~iv~~G~~~~~~ 257 (612)
|++++.|+++++.
T Consensus 557 G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 557 GKITEYGKHEELL 569 (595)
T ss_dssp TEEEEEECSCC--
T ss_pred CEEEEECCHHHHH
Confidence 9999999998874
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2e-43 Score=398.50 Aligned_cols=215 Identities=23% Similarity=0.354 Sum_probs=182.6
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|+ .+++++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.+||++
T Consensus 340 ~~i~~~~v~~~y~--------~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYP--------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-----DEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSS--------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-----SEEEEEETTEE
T ss_pred CcEEEEEEEEEcC--------CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC-----CCCeEEECCEE
Confidence 4699999999872 1236799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-----------cCcc
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-----------KNTL 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~ 165 (612)
+.+ ...+|+.++||+|++.+++ .||+||+.++.. + ..+ +++++++++.+|+.+. .++.
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 754 2457789999999999987 499999987531 1 122 2446667777766543 3445
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
..+||||||||++|||||+.+|++++||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G 554 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDG 554 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECC
Confidence 578999999999999999999999999999999999999999999999975 8999999999863 3 679999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
++++.|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999887753
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-43 Score=401.32 Aligned_cols=214 Identities=25% Similarity=0.380 Sum_probs=180.0
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||+++|. +++++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.+||+
T Consensus 352 ~~~i~~~~v~~~y~---------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYD---------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-----DRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSS---------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC-----SEEEEEETTE
T ss_pred CCeEEEEEEEEECC---------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CCeEEEECCE
Confidence 34699999999872 246799999999999999999999999999999999999986 6899999999
Q ss_pred eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccC-----------c
Q psy12625 98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN-----------T 164 (612)
Q Consensus 98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~ 164 (612)
++.+ ...+|+.++||+|++.+++ .||+||+.++.. ..++ +++++.++..++.+..+ +
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 9754 3567889999999999986 599999987421 1121 23445555555544333 3
Q ss_pred ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
...+||||||||++|||||+.+|++++||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.||+|++|++
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 564 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD 564 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 346899999999999999999999999999999999999999999999986 58999999999874 4 55999999999
Q ss_pred CeEEEecCccChhh
Q psy12625 245 GYCTYQGTVPGLVP 258 (612)
Q Consensus 245 G~iv~~G~~~~~~~ 258 (612)
|++++.|+++++.+
T Consensus 565 G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 565 GEIVEMGKHDELIQ 578 (598)
T ss_dssp SSEEECSCHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999988753
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=7.4e-42 Score=352.26 Aligned_cols=196 Identities=24% Similarity=0.355 Sum_probs=152.6
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||++. .+++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|
T Consensus 39 ~~l~~~~l~~~------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----~~G~I~~~g-- 99 (290)
T 2bbs_A 39 DSLSFSNFSLL------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSG-- 99 (290)
T ss_dssp -----------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE-----EEEEEECCS--
T ss_pred ceEEEEEEEEc------------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCcEEEECC--
Confidence 35889999873 24699999999999999999999999999999999999986 689999987
Q ss_pred ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-----------cCcccC
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-----------KNTLTK 167 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~ 167 (612)
.++||+|++.+++. ||+||+. +. . ... .++++.++.+++.+. .++.++
T Consensus 100 ---------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 158 (290)
T 2bbs_A 100 ---------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158 (290)
T ss_dssp ---------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----C
T ss_pred ---------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCccC
Confidence 38999999998885 9999997 31 1 111 123344555555432 233457
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL-RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
+||||||||++|||||+.+|++++|||||+|||+.++..+++.+ ++++ +|+|||++|||+. .+ ..||++++|++|+
T Consensus 159 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~ 235 (290)
T 2bbs_A 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGS 235 (290)
T ss_dssp CCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCe
Confidence 99999999999999999999999999999999999999999974 5554 5899999999975 44 5699999999999
Q ss_pred EEEecCccChh
Q psy12625 247 CTYQGTVPGLV 257 (612)
Q Consensus 247 iv~~G~~~~~~ 257 (612)
++..|+++++.
T Consensus 236 i~~~g~~~~l~ 246 (290)
T 2bbs_A 236 SYFYGTFSELQ 246 (290)
T ss_dssp EEEEECHHHHH
T ss_pred EEEeCCHHHHh
Confidence 99999988764
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.2e-41 Score=408.25 Aligned_cols=218 Identities=24% Similarity=0.357 Sum_probs=185.2
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||+++|+. ..+.++|+|+|++|+|||.+||+||||||||||+++|.|+++| .+|+|.+||.
T Consensus 1074 ~g~I~f~nVsf~Y~~-------~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPE-------RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-----LGGEIFIDGS 1141 (1321)
T ss_dssp CCCEEEEEEEECCTT-------SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC-----SSSEEEETTE
T ss_pred CCeEEEEEEEEeCCC-------CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC-----CCCEEEECCE
Confidence 347999999998832 1346799999999999999999999999999999999999986 6899999999
Q ss_pred eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-------ccCcccC-
Q psy12625 98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-------CKNTLTK- 167 (612)
Q Consensus 98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~~~- 167 (612)
++.+ .+.+|++++|||||+.+|+ -|++||+.++.. +.+.+ ++.+.++++..++.+ -.|+.++
T Consensus 1142 di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge 1213 (1321)
T 4f4c_A 1142 EIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGD 1213 (1321)
T ss_dssp ETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETT
T ss_pred EhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCC---CCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecC
Confidence 9865 3678999999999999997 599999976521 11223 345666677766643 2345544
Q ss_pred ---CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 168 ---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 168 ---~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|.++. ...||+|+||++
T Consensus 1214 ~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1214 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN 1290 (1321)
T ss_dssp TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS
T ss_pred CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC
Confidence 699999999999999999999999999999999999999999998765 57999999999874 578999999999
Q ss_pred CeEEEecCccChhh
Q psy12625 245 GYCTYQGTVPGLVP 258 (612)
Q Consensus 245 G~iv~~G~~~~~~~ 258 (612)
|+++++|+++++.+
T Consensus 1291 G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1291 GTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998875
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.1e-40 Score=401.05 Aligned_cols=216 Identities=25% Similarity=0.373 Sum_probs=183.8
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++|++|+|+. ..++++|+|+|+++++||.+||+||||||||||+++|.|+++| .+|+|.+||+
T Consensus 413 ~g~I~~~nvsF~Y~~-------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~-----~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPS-------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-----LKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSS-------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC-----SEEEEEETTE
T ss_pred CCcEEEEEeeeeCCC-------CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc-----ccCcccCCCc
Confidence 347999999999842 2457899999999999999999999999999999999999986 6999999999
Q ss_pred eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-------ccCccc--
Q psy12625 98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-------CKNTLT-- 166 (612)
Q Consensus 98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~~-- 166 (612)
++.+. +.+|+++|||+|++.+|. -|++||+.|+.. ..+ ++++.++++..++.+ -.|+.+
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~~-----~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGKE-----GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred cchhccHHHHhhcccccCCcceeeC-CchhHHHhhhcc-----cch----HHHHHHHHHHccchhHHHcCCCCCccEecC
Confidence 98653 668899999999999987 699999988621 122 344556666655432 234444
Q ss_pred --CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 167 --KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 167 --~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
.+||||||||++||||+++||+|++||||||+||+.+...+.+.|+++. +|+|+|+++|+++. .+.||+|++|++
T Consensus 551 ~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~--i~~aD~Iivl~~ 627 (1321)
T 4f4c_A 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLST--IRNADLIISCKN 627 (1321)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTT--TTTCSEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHH--HHhCCEEEEeeC
Confidence 4699999999999999999999999999999999999999999999876 48999999999873 688999999999
Q ss_pred CeEEEecCccChhh
Q psy12625 245 GYCTYQGTVPGLVP 258 (612)
Q Consensus 245 G~iv~~G~~~~~~~ 258 (612)
|+++++|+.+++.+
T Consensus 628 G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 628 GQVVEVGDHRALMA 641 (1321)
T ss_dssp TEEEEEECHHHHHT
T ss_pred CeeeccCCHHHHHH
Confidence 99999999998764
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.5e-40 Score=398.97 Aligned_cols=220 Identities=26% Similarity=0.349 Sum_probs=180.8
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...|+++||+++|+. ..++++|+|+|+++++||++||+||||||||||+++|+|+++| .+|+|.+||+
T Consensus 385 ~g~i~~~~v~~~y~~-------~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~-----~~G~i~i~g~ 452 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPS-------RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-----LDGMVSIDGQ 452 (1284)
T ss_dssp CCCEEEEEEEECCSS-------TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC-----SEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-------CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCE
Confidence 346999999998832 1235799999999999999999999999999999999999986 6899999999
Q ss_pred eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHH-----HHHHHHHc--CCccccCcccCC
Q psy12625 98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK-----VDSIADSL--SISTCKNTLTKH 168 (612)
Q Consensus 98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~ 168 (612)
++.+ .+.+|+.+|||+|++.+++. ||+||+.++.. ..+.++..+. +.+.++.+ |++...++...+
T Consensus 453 ~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 526 (1284)
T 3g5u_A 453 DIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ 526 (1284)
T ss_dssp EGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCS
T ss_pred EHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCc
Confidence 9754 35678889999999999975 99999998631 1222222111 22334443 334444556668
Q ss_pred CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
||||||||++|||||+.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++ .+ ..||+|++|++|+++
T Consensus 527 LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~ 603 (1284)
T 3g5u_A 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIV 603 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HH-TTCSEEEECSSSCCC
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998875 5899999999976 34 569999999999999
Q ss_pred EecCccChhh
Q psy12625 249 YQGTVPGLVP 258 (612)
Q Consensus 249 ~~G~~~~~~~ 258 (612)
+.|+++++.+
T Consensus 604 ~~g~~~~l~~ 613 (1284)
T 3g5u_A 604 EQGNHDELMR 613 (1284)
T ss_dssp CEECHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999988753
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.4e-39 Score=391.05 Aligned_cols=217 Identities=24% Similarity=0.371 Sum_probs=178.3
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++||+++|+. ..++++|+|+|+++++||++||+||||||||||+++|+|+.+| .+|+|.+||++
T Consensus 1029 g~i~~~~v~~~y~~-------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p-----~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPT-------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-----MAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSC-------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC-----SEEEEESSSSC
T ss_pred CcEEEEEEEEECCC-------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCCEEEECCEE
Confidence 46999999998832 1235799999999999999999999999999999999999986 68999999999
Q ss_pred ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCc----c
Q psy12625 99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNT----L 165 (612)
Q Consensus 99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~----~ 165 (612)
+.+ .+.+|+.++||||++.+++ .||+||+.++... ...++ +.+.+.++..++.+. .|+ .
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 754 3567889999999998875 7999999764211 11222 223344444444322 233 3
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
..+||||||||++|||||+.+|+||+|||||||||+.+...+.+.|+++ .+|+|+|+++|+++. + ..||||++|++|
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNG 1245 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETB
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECC
Confidence 4579999999999999999999999999999999999999999999885 468999999999874 4 669999999999
Q ss_pred eEEEecCccChhh
Q psy12625 246 YCTYQGTVPGLVP 258 (612)
Q Consensus 246 ~iv~~G~~~~~~~ 258 (612)
++++.|+++++.+
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999987754
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.2e-38 Score=356.86 Aligned_cols=206 Identities=24% Similarity=0.253 Sum_probs=179.2
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...++++|+++.| ++ ..|+++|+++++||+++|+||||||||||||+|+|+.+| .+|+|.+
T Consensus 355 ~~~l~~~~l~~~~----------~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p-----~~G~I~~--- 415 (607)
T 3bk7_A 355 ETLVEYPRLVKDY----------GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----TEGKVEW--- 415 (607)
T ss_dssp CEEEEECCEEEEC----------SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-----SBSCCCC---
T ss_pred ceEEEEeceEEEe----------cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEE---
Confidence 3579999999876 33 368999999999999999999999999999999999986 5788865
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
+..++|++|+....+.+||.|++....... ....++++++++.+|+.+..++++++|||||||||
T Consensus 416 --------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv 480 (607)
T 3bk7_A 416 --------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 480 (607)
T ss_dssp --------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHH
T ss_pred --------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 246999999988878899999886531111 01235678999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC--CeEEEecCcc
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE--GYCTYQGTVP 254 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~ 254 (612)
+|||+|+.+|++|||||||+|||+.++..+++.|+++++ +|+|||+++||.. .+..+|||+++|++ |+++..|+++
T Consensus 481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~ 559 (607)
T 3bk7_A 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPM 559 (607)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHH
Confidence 999999999999999999999999999999999999975 6999999999975 67889999999986 8888999998
Q ss_pred Chhh
Q psy12625 255 GLVP 258 (612)
Q Consensus 255 ~~~~ 258 (612)
++.+
T Consensus 560 ~~~~ 563 (607)
T 3bk7_A 560 GMRE 563 (607)
T ss_dssp EHHH
T ss_pred HHHh
Confidence 8765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.3e-38 Score=353.05 Aligned_cols=206 Identities=25% Similarity=0.266 Sum_probs=178.7
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...++++|+++.| ++ ..|+++|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 285 ~~~l~~~~l~~~~----------~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----~~G~i~~--- 345 (538)
T 1yqt_A 285 ETLVTYPRLVKDY----------GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----TEGKIEW--- 345 (538)
T ss_dssp CEEEEECCEEEEE----------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-----SBCCCCC---
T ss_pred CeEEEEeeEEEEE----------CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEE---
Confidence 3579999999876 33 368999999999999999999999999999999999986 5788864
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
...++||+|+....+.+||.|++........ ..+++++++++.+|+.+..++++++|||||||||
T Consensus 346 --------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv 410 (538)
T 1yqt_A 346 --------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRV 410 (538)
T ss_dssp --------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHH
T ss_pred --------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence 2359999999887788999998765311111 1135678899999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC--CeEEEecCcc
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE--GYCTYQGTVP 254 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~ 254 (612)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++||.. .+..+|||+++|++ |+++..|+++
T Consensus 411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~ 489 (538)
T 1yqt_A 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPM 489 (538)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHH
Confidence 999999999999999999999999999999999999975 6999999999975 67889999999986 7888999998
Q ss_pred Chhh
Q psy12625 255 GLVP 258 (612)
Q Consensus 255 ~~~~ 258 (612)
++..
T Consensus 490 ~~~~ 493 (538)
T 1yqt_A 490 GMRE 493 (538)
T ss_dssp EHHH
T ss_pred HHHh
Confidence 8765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-37 Score=346.60 Aligned_cols=208 Identities=21% Similarity=0.210 Sum_probs=176.5
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
...++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+++
T Consensus 267 ~~~l~~~~l~~~~----------~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~- 329 (538)
T 3ozx_A 267 KTKMKWTKIIKKL----------GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA-----DEGSVTPEK- 329 (538)
T ss_dssp CEEEEECCEEEEE----------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----SBCCEESSC-
T ss_pred cceEEEcceEEEE----------CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECC-
Confidence 3568899999876 32 357888999999999999999999999999999999986 689998764
Q ss_pred eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL 177 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 177 (612)
+.++|++|+.......||+||+...... ... .....++++++.+||.+..++++++|||||||||
T Consensus 330 ---------~~i~~~~q~~~~~~~~tv~~~l~~~~~~----~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv 394 (538)
T 3ozx_A 330 ---------QILSYKPQRIFPNYDGTVQQYLENASKD----ALS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKL 394 (538)
T ss_dssp ---------CCEEEECSSCCCCCSSBHHHHHHHHCSS----TTC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHH
T ss_pred ---------eeeEeechhcccccCCCHHHHHHHhhhh----ccc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHH
Confidence 3489999987777789999999874211 111 1234578899999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC--CeEEEecCcc
Q psy12625 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE--GYCTYQGTVP 254 (612)
Q Consensus 178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~ 254 (612)
+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++||.. ++..+||||++|++ |.....+++.
T Consensus 395 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChH
Confidence 999999999999999999999999999999999999986 6999999999976 68889999999986 5666777776
Q ss_pred Chhh
Q psy12625 255 GLVP 258 (612)
Q Consensus 255 ~~~~ 258 (612)
++..
T Consensus 474 ~~~~ 477 (538)
T 3ozx_A 474 TLKT 477 (538)
T ss_dssp EHHH
T ss_pred HHHH
Confidence 6543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=339.92 Aligned_cols=192 Identities=22% Similarity=0.255 Sum_probs=165.0
Q ss_pred cccccceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC
Q psy12625 43 KDILKDISGVFVSK-----ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL 117 (612)
Q Consensus 43 ~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~ 117 (612)
+.+++|+|+++++| |+++|+||||||||||+|+|+|+.+| .+|+. +. +..++|++|+..
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-----~~G~~------~~-----~~~i~~~~q~~~ 423 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-----DEGQD------IP-----KLNVSMKPQKIA 423 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-----SBCCC------CC-----SCCEEEECSSCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-----CCCcC------cc-----CCcEEEeccccc
Confidence 45789999999999 78999999999999999999999987 45641 11 346999999977
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625 118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197 (612)
Q Consensus 118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts 197 (612)
.....||+|++... .+. ... ..+.++++++.+||.+..++++.+|||||||||+|||||+.+|++|+|||||+
T Consensus 424 ~~~~~tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 424 PKFPGTVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp CCCCSBHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred ccCCccHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 66668999987532 211 111 13457789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC--CeEEEecCccChhh
Q psy12625 198 GLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE--GYCTYQGTVPGLVP 258 (612)
Q Consensus 198 gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 258 (612)
|||+.++..++++|+++++ +|+|||++|||.. ++..+|||+++|++ |+++..|+|+++.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999999999999999964 6999999999976 68889999999986 89999999998865
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.2e-37 Score=345.07 Aligned_cols=194 Identities=24% Similarity=0.298 Sum_probs=159.0
Q ss_pred EeEEEEEEeecccccccccc-ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE---------E
Q psy12625 24 QDISYSALYYDTHSYSIKSK-DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI---------E 93 (612)
Q Consensus 24 ~~ls~~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I---------~ 93 (612)
+||+++| +++ .+|+|+| ++++||+++|+||||||||||||+|+|+++|. +|++ .
T Consensus 95 ~~ls~~y----------g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~-----~G~~~~~~~~~~~~ 158 (607)
T 3bk7_A 95 EDCVHRY----------GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-----LCEDNDSWDNVIRA 158 (607)
T ss_dssp GSEEEEC----------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC-----TTTTCCCHHHHHHH
T ss_pred CCeEEEE----------CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC-----CCccccccchhhhe
Confidence 5666665 444 4899999 99999999999999999999999999999873 4554 3
Q ss_pred ECCEeccch--H--hhccceEEEccCCCCCCC---CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc
Q psy12625 94 INETRLQDH--R--MLRKESCYIMQDNLLQEL---LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT 166 (612)
Q Consensus 94 ~~g~~~~~~--~--~~~~~i~yv~Q~~~l~~~---lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~ 166 (612)
++|.++.+. . ..+..+++++|.....+. .||+|++.. . . .+++++++++.+||++..++++
T Consensus 159 ~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~---~-----~~~~~~~~L~~lgL~~~~~~~~ 226 (607)
T 3bk7_A 159 FRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V---D-----EVGKFEEVVKELELENVLDREL 226 (607)
T ss_dssp TTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T---C-----CSSCHHHHHHHTTCTTGGGSBG
T ss_pred eCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h---H-----HHHHHHHHHHHcCCCchhCCCh
Confidence 566554221 1 123468899987433221 389998853 1 1 1235788999999999999999
Q ss_pred CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
++|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++||+. .+..+||+|++|+++.
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCCc
Confidence 999999999999999999999999999999999999999999999999888999999999975 6788999999998653
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9.7e-37 Score=339.89 Aligned_cols=198 Identities=24% Similarity=0.292 Sum_probs=160.0
Q ss_pred eEEE-EeEEEEEEeecccccccccc-ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE-----
Q psy12625 20 NLLF-QDISYSALYYDTHSYSIKSK-DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI----- 92 (612)
Q Consensus 20 ~l~~-~~ls~~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I----- 92 (612)
-.++ +||+++| +++ .+|+|+| ++++||+++|+||||||||||||+|+|+++|. +|++
T Consensus 20 ~~~~~~~ls~~y----------g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~-----~G~~~~~~~ 83 (538)
T 1yqt_A 20 MEQLEEDCVHRY----------GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN-----LCGDNDSWD 83 (538)
T ss_dssp ----CCCEEEEC----------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-----TTTTCCSHH
T ss_pred ChhHhcCcEEEE----------CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCccCcchh
Confidence 3444 5888876 344 4899999 99999999999999999999999999999873 4554
Q ss_pred ----EECCEeccch--H--hhccceEEEccCCCCCCC---CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc
Q psy12625 93 ----EINETRLQDH--R--MLRKESCYIMQDNLLQEL---LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC 161 (612)
Q Consensus 93 ----~~~g~~~~~~--~--~~~~~i~yv~Q~~~l~~~---lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~ 161 (612)
.++|.++... . ..+..+++++|+....+. .|+.|++... . .+++++++++.+||++.
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---~---------~~~~~~~~l~~lgl~~~ 151 (538)
T 1yqt_A 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---D---------ETGKLEEVVKALELENV 151 (538)
T ss_dssp HHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---C---------SSSCHHHHHHHTTCTTT
T ss_pred hhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---h---------HHHHHHHHHHHcCCChh
Confidence 3566553221 1 113468899997544332 3898887531 0 12357889999999999
Q ss_pred cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee
Q psy12625 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241 (612)
Q Consensus 162 ~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 241 (612)
.++++++|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++++++|+|||+++||.. .+.++||++++
T Consensus 152 ~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~v 230 (538)
T 1yqt_A 152 LEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHV 230 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999888999999999975 67889999999
Q ss_pred ecCCe
Q psy12625 242 LTEGY 246 (612)
Q Consensus 242 L~~G~ 246 (612)
|++|.
T Consensus 231 l~~~~ 235 (538)
T 1yqt_A 231 VYGEP 235 (538)
T ss_dssp EEEET
T ss_pred EcCcc
Confidence 98653
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.9e-36 Score=344.48 Aligned_cols=212 Identities=23% Similarity=0.304 Sum_probs=144.6
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHCCCCCCCCC--CceeEEEECCE
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLL---------------------DILAGYRRPKKTE--TNSGYIEINET 97 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------------------~~l~g~~~p~~~~--~~~G~I~~~g~ 97 (612)
..+++|+|||++|++||+++|+||||||||||+ ++++|+.+|..+. ...|.|.++|.
T Consensus 29 ~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 29 ARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp ECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSC
T ss_pred CCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCc
Confidence 356799999999999999999999999999998 8888887763211 12567778776
Q ss_pred eccchHhhccceEEEccCCC-------------------CCCCCCHHHHHHHHHHhccCCCCCHHHHH------HHHHHH
Q psy12625 98 RLQDHRMLRKESCYIMQDNL-------------------LQELLTVEESLTVAAHLKLGNQYSRKAKE------SKVDSI 152 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~~-------------------l~~~lTv~e~l~~~~~l~~~~~~~~~~~~------~~v~~~ 152 (612)
+... ..++.+++|+|... .++.+||+||+.+...+..... .....+ ....++
T Consensus 109 ~~~~--~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 185 (670)
T 3ux8_A 109 TTSR--NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGF 185 (670)
T ss_dssp C-------CCBHHHHTTCC-------------------------CC---------------------------CHHHHHH
T ss_pred hhhc--cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHH
Confidence 5321 12344555555433 2456899999987533221100 000000 111245
Q ss_pred HHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 153 ADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 153 l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
++.+||.+. .++++++|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||+.
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 889999875 699999999999999999999999998 99999999999999999999999999888999999999975
Q ss_pred hHHHhcccceeee------cCCeEEEecCccChh
Q psy12625 230 ASLLNMADYLYVL------TEGYCTYQGTVPGLV 257 (612)
Q Consensus 230 ~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 257 (612)
. ...||++++| ++|++++.|+++++.
T Consensus 266 -~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 266 -T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp -H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred -H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 3 4569999999 899999999998764
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.4e-35 Score=340.95 Aligned_cols=199 Identities=24% Similarity=0.268 Sum_probs=168.0
Q ss_pred ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625 18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97 (612)
Q Consensus 18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~ 97 (612)
+..|...|+++.| +++.+|+|+|+++++||+++|+||||||||||||+|+| |+| +|.
T Consensus 433 ~~~L~~~~ls~~y----------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~ 489 (986)
T 2iw3_A 433 GEDLCNCEFSLAY----------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGF 489 (986)
T ss_dssp SCEEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTC
T ss_pred cceeEEeeEEEEE----------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCC
Confidence 4567778999887 56789999999999999999999999999999999995 111 333
Q ss_pred eccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhh
Q psy12625 98 RLQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKK 175 (612)
Q Consensus 98 ~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq 175 (612)
+.. . +..++|++|+. .+++.+||.|++.+ . .. .. +++++++++.+|+. +..++++++|||||||
T Consensus 490 ~~~--~--~~~~~~v~q~~~~~~~~ltv~e~l~~--~--~~-~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQ 555 (986)
T 2iw3_A 490 PTQ--E--ECRTVYVEHDIDGTHSDTSVLDFVFE--S--GV-GT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKM 555 (986)
T ss_dssp CCT--T--TSCEEETTCCCCCCCTTSBHHHHHHT--T--CS-SC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHH
T ss_pred ccc--c--ceeEEEEcccccccccCCcHHHHHHH--h--hc-CH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHH
Confidence 321 1 12378999874 67888999999975 1 11 11 46788999999995 6789999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE-EecCcc
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT-YQGTVP 254 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~ 254 (612)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++ +|+|||+++||.. .+.++||++++|++|+++ +.|+++
T Consensus 556 RvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~ 631 (986)
T 2iw3_A 556 KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFT 631 (986)
T ss_dssp HHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHH
Confidence 99999999999999999999999999999999999988 5899999999975 678899999999999997 689887
Q ss_pred Chh
Q psy12625 255 GLV 257 (612)
Q Consensus 255 ~~~ 257 (612)
+..
T Consensus 632 e~~ 634 (986)
T 2iw3_A 632 EFV 634 (986)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.4e-35 Score=343.20 Aligned_cols=208 Identities=24% Similarity=0.320 Sum_probs=163.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..|+++|++++| +.+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y--------~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P-----~sG~I~~~~~- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQY--------PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP-----TSGEVYTHEN- 735 (986)
T ss_dssp EEEEEEEEEECC--------TTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC-----SEEEEEECTT-
T ss_pred ceEEEEeeEEEe--------CCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEEcCc-
Confidence 469999999876 21236799999999999999999999999999999999999986 6899999862
Q ss_pred ccchHhhccceEEEccCCCC----CCCCCHHHHHHHHHHhc------------cC-------------------------
Q psy12625 99 LQDHRMLRKESCYIMQDNLL----QELLTVEESLTVAAHLK------------LG------------------------- 137 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l----~~~lTv~e~l~~~~~l~------------~~------------------------- 137 (612)
..++|++|++.. ....|+.|++.+..... ..
T Consensus 736 --------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~ 807 (986)
T 2iw3_A 736 --------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHS 807 (986)
T ss_dssp --------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEE
T ss_pred --------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhh
Confidence 147888886521 12357777665421100 00
Q ss_pred ---------------------------CCC----------------------------------CHHHHHHHHHHHHHHc
Q psy12625 138 ---------------------------NQY----------------------------------SRKAKESKVDSIADSL 156 (612)
Q Consensus 138 ---------------------------~~~----------------------------------~~~~~~~~v~~~l~~l 156 (612)
... .+...+++++++++.+
T Consensus 808 r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l 887 (986)
T 2iw3_A 808 RRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML 887 (986)
T ss_dssp EEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred hhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc
Confidence 000 0001135688999999
Q ss_pred CCcc-c-cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q psy12625 157 SIST-C-KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN 234 (612)
Q Consensus 157 gL~~-~-~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~ 234 (612)
||.+ . .++++++|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+.+
T Consensus 888 GL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~ 963 (986)
T 2iw3_A 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKN 963 (986)
T ss_dssp TCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTT
T ss_pred CCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHH
Confidence 9975 3 58899999999999999999999999999999999999999999999888764 579999999975 5778
Q ss_pred cccceeeecCCeEEEecC
Q psy12625 235 MADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 235 ~~D~v~~L~~G~iv~~G~ 252 (612)
+||++++|++|+++..|+
T Consensus 964 l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 964 LTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TCCEEECCBTTBCCC---
T ss_pred hCCEEEEEECCEEEEeCC
Confidence 999999999999987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.4e-34 Score=327.43 Aligned_cols=199 Identities=24% Similarity=0.330 Sum_probs=153.3
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------CCCCCCCCCCceeEEEECCEec
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA----------------------GYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~----------------------g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.+.+|+|||++|++||+++|+||||||||||+++|. |+.+ ..|.|.++|.++
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~------~~~~i~~~~~~~ 407 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH------LDKVIDIDQSPI 407 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG------CSEEEECCSSCS
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc------cCceeEeccccC
Confidence 456899999999999999999999999999998764 2222 246788888765
Q ss_pred cchH-----hh--------------------------------------ccceEEEccCCCCCC----------------
Q psy12625 100 QDHR-----ML--------------------------------------RKESCYIMQDNLLQE---------------- 120 (612)
Q Consensus 100 ~~~~-----~~--------------------------------------~~~i~yv~Q~~~l~~---------------- 120 (612)
.... .. ....|+++|+..+++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (670)
T 3ux8_A 408 GRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNR 487 (670)
T ss_dssp CSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCH
T ss_pred CCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccCh
Confidence 3110 00 011244444333322
Q ss_pred ----------------CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHH
Q psy12625 121 ----------------LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALEL 183 (612)
Q Consensus 121 ----------------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL 183 (612)
.+||+||+.+.... ...+++.+.++.+|+.+ ..++++++|||||||||+|||||
T Consensus 488 ~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 488 ETLEVTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL 558 (670)
T ss_dssp HHHTCCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHH
T ss_pred hhhheeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHH
Confidence 47899998774211 12345677888999975 46889999999999999999999
Q ss_pred hhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCcc
Q psy12625 184 LSNP---SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVP 254 (612)
Q Consensus 184 ~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~ 254 (612)
+.+| ++|||||||+|||+.++..++++|++++++|+|||+++||+. . ...||+|++| ++|++++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 9887 599999999999999999999999999888999999999975 3 4779999999 899999999998
Q ss_pred Chh
Q psy12625 255 GLV 257 (612)
Q Consensus 255 ~~~ 257 (612)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-34 Score=318.70 Aligned_cols=212 Identities=22% Similarity=0.333 Sum_probs=154.5
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE-------
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI------- 92 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I------- 92 (612)
.|++.||...+.....++|+. ....|++++ .+++||+++|+||||||||||||+|+|+++| .+|+|
T Consensus 69 ~i~i~nl~~~~~~~~~~~Y~~-~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P-----~~G~i~~~~~~~ 141 (608)
T 3j16_B 69 AIQIINLPTNLEAHVTHRYSA-NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP-----NLGRFDDPPEWQ 141 (608)
T ss_dssp CEEEEEESSSSSTTEEEECST-TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-----CTTTTCCSSCHH
T ss_pred ceEEecCChhhcCCeEEEECC-CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC-----CCceEecccchh
Confidence 466666653331111112221 234677777 6899999999999999999999999999987 45666
Q ss_pred ----EECCEeccch--Hhhccc--eEEEccCCCC------CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC
Q psy12625 93 ----EINETRLQDH--RMLRKE--SCYIMQDNLL------QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158 (612)
Q Consensus 93 ----~~~g~~~~~~--~~~~~~--i~yv~Q~~~l------~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 158 (612)
.+.|.++... ....+. ..+.+|.... -+..++.+++... . . ..+++++++++.+||
T Consensus 142 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~--~----~~~~~~~~~l~~~gl 211 (608)
T 3j16_B 142 EIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR----M--E----KSPEDVKRYIKILQL 211 (608)
T ss_dssp HHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH----C--C----SCHHHHHHHHHHHTC
T ss_pred hhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh----h--h----hHHHHHHHHHHHcCC
Confidence 2333322111 111122 2334443211 1123555554321 0 1 123568899999999
Q ss_pred ccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccc
Q psy12625 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADY 238 (612)
Q Consensus 159 ~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~ 238 (612)
.+..++++.+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++||.. ++..++|+
T Consensus 212 ~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~dr 290 (608)
T 3j16_B 212 ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDF 290 (608)
T ss_dssp TGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSE
T ss_pred cchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999888999999999975 68899999
Q ss_pred eeeecCCeEEE
Q psy12625 239 LYVLTEGYCTY 249 (612)
Q Consensus 239 v~~L~~G~iv~ 249 (612)
+++|++|..++
T Consensus 291 v~vl~~~~~~~ 301 (608)
T 3j16_B 291 VCIIYGVPSVY 301 (608)
T ss_dssp EEEEESCTTTE
T ss_pred EEEEeCCcccc
Confidence 99998876544
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.98 E-value=1.5e-33 Score=313.62 Aligned_cols=178 Identities=25% Similarity=0.304 Sum_probs=141.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE-----------EECCEeccch--Hhh--ccceEEEccCC
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-----------EINETRLQDH--RML--RKESCYIMQDN 116 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I-----------~~~g~~~~~~--~~~--~~~i~yv~Q~~ 116 (612)
..++||+++|+||||||||||+|+|+|+++| .+|+| .++|+++... ... ...+....|..
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p-----~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 95 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIP-----NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYV 95 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCC-----CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchh
Confidence 4569999999999999999999999999987 46777 5667654321 111 12344444432
Q ss_pred CCC---CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEe
Q psy12625 117 LLQ---ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193 (612)
Q Consensus 117 ~l~---~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlD 193 (612)
... ...|++|++... +.+++++++++.+|+.+..++++++|||||||||+||+||+.+|++|+||
T Consensus 96 ~~~~~~~~~~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlD 163 (538)
T 3ozx_A 96 EYASKFLKGTVNEILTKI------------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFD 163 (538)
T ss_dssp TGGGTTCCSBHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred hhhhhhccCcHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 221 224788765321 01235678999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248 (612)
Q Consensus 194 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 248 (612)
|||++||+.++..+.+.|+++++ |+|||+++||.. .+..+||+|++|++|...
T Consensus 164 EPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 164 QPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTT
T ss_pred CCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCccc
Confidence 99999999999999999999976 899999999975 688999999999876543
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=8.2e-32 Score=311.17 Aligned_cols=202 Identities=24% Similarity=0.331 Sum_probs=156.7
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHH-CCC---------CCCCCCCcee------EEEECCEeccch-----H
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILA-GYR---------RPKKTETNSG------YIEINETRLQDH-----R 103 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~-g~~---------~p~~~~~~~G------~I~~~g~~~~~~-----~ 103 (612)
.|+|||++|++||+++|+|+||||||||++.|. |.+ .+.......| .|.++|.++... .
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999853 211 1111011234 588998876310 0
Q ss_pred -------hh---------ccceEEEccCCCCC----------------------C-------------------------
Q psy12625 104 -------ML---------RKESCYIMQDNLLQ----------------------E------------------------- 120 (612)
Q Consensus 104 -------~~---------~~~i~yv~Q~~~l~----------------------~------------------------- 120 (612)
.. .+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 00 13457777753221 0
Q ss_pred -------CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHHhhCC---CE
Q psy12625 121 -------LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSNP---SI 189 (612)
Q Consensus 121 -------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~p---~i 189 (612)
.+||.|++.+.. .. . ..+++.++++.+||.. ..++++.+|||||||||+||++|+.+| ++
T Consensus 799 ~sI~dvl~ltv~e~l~~~~------~~-~--~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~l 869 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFA------SI-P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTL 869 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTC------SC-H--HHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEE
T ss_pred CCHHHhhhcCHHHHHHHHh------cc-h--hHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCE
Confidence 357777776532 11 1 1234578999999987 789999999999999999999999865 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625 190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV 257 (612)
Q Consensus 190 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 257 (612)
+||||||+|||+.++..+++.|++++++|.|||+++||+. . ...||+|++| ++|++++.|+++++.
T Consensus 870 LILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 870 YILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999999999999989999999999975 3 4789999999 689999999988764
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=9.3e-32 Score=310.43 Aligned_cols=219 Identities=20% Similarity=0.282 Sum_probs=159.6
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHH-HHCCC-------CCCCC-----
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDI-LAGYR-------RPKKT----- 85 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~-l~g~~-------~p~~~----- 85 (612)
..|+++|+++ ..|+|||++|++||+++|+|+||||||||++. |+|+. +|..+
T Consensus 501 ~~L~v~~l~~---------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~ 565 (842)
T 2vf7_A 501 GWLELNGVTR---------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDED 565 (842)
T ss_dssp CEEEEEEEEE---------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------
T ss_pred ceEEEEeeee---------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccc
Confidence 4588888753 26999999999999999999999999999996 77543 22111
Q ss_pred --------CCcee-------EEEECCEeccch------------Hhhc---------cceEEEcc---------------
Q psy12625 86 --------ETNSG-------YIEINETRLQDH------------RMLR---------KESCYIMQ--------------- 114 (612)
Q Consensus 86 --------~~~~G-------~I~~~g~~~~~~------------~~~~---------~~i~yv~Q--------------- 114 (612)
...+| .|.++|.++... ...| +..||.++
T Consensus 566 ~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~ 645 (842)
T 2vf7_A 566 PADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQ 645 (842)
T ss_dssp ------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTT
T ss_pred ccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCcccccccccccccccccc
Confidence 11467 789998876311 0111 11222221
Q ss_pred -------CCCCC------------------------CCCCHHHHHHHHH--HhccCCCCCHHHHHHHHHHHHHHcCCcc-
Q psy12625 115 -------DNLLQ------------------------ELLTVEESLTVAA--HLKLGNQYSRKAKESKVDSIADSLSIST- 160 (612)
Q Consensus 115 -------~~~l~------------------------~~lTv~e~l~~~~--~l~~~~~~~~~~~~~~v~~~l~~lgL~~- 160 (612)
+-.++ ...++.|++.+.. .+..... ....+++.++++.+||..
T Consensus 646 g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---~~~~~~~~~~L~~~gL~~~ 722 (842)
T 2vf7_A 646 GEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD---ESAIFRALDTLREVGLGYL 722 (842)
T ss_dssp TCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---SHHHHHHHHHHHHTTCTTS
T ss_pred CCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---chHHHHHHHHHHHcCCCcc
Confidence 11111 1234444432110 0000001 112356889999999987
Q ss_pred ccCcccCCCChhhhhHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc
Q psy12625 161 CKNTLTKHLSGGQKKRLSIALELLSN---PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD 237 (612)
Q Consensus 161 ~~~~~~~~LSgGerqRv~ia~aL~~~---p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D 237 (612)
..++++.+|||||||||+||++|+.+ |++|||||||+|||+.++..+++.|++++++|.|||+++||+. .+ ..||
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aD 800 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASD 800 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCS
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCC
Confidence 46899999999999999999999996 7999999999999999999999999999989999999999975 45 8899
Q ss_pred ceeee------cCCeEEEecCccChh
Q psy12625 238 YLYVL------TEGYCTYQGTVPGLV 257 (612)
Q Consensus 238 ~v~~L------~~G~iv~~G~~~~~~ 257 (612)
+|++| ++|++++.|+++++.
T Consensus 801 rii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 801 WVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp EEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred EEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 99999 689999999988764
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=6e-31 Score=306.01 Aligned_cols=205 Identities=23% Similarity=0.365 Sum_probs=158.6
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHCCCCCCCC-CCce------eEEEECCEeccch----
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLL---------DILAGYRRPKKT-ETNS------GYIEINETRLQDH---- 102 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------~~l~g~~~p~~~-~~~~------G~I~~~g~~~~~~---- 102 (612)
+..|+|||+++++|++++|+||||||||||+ +.+.+...+... ...+ +.+.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 455554332111 1123 3455655443110
Q ss_pred -H-------h-------------------------------hccceEEEccCCCCCC-----------------------
Q psy12625 103 -R-------M-------------------------------LRKESCYIMQDNLLQE----------------------- 120 (612)
Q Consensus 103 -~-------~-------------------------------~~~~i~yv~Q~~~l~~----------------------- 120 (612)
. . ..+..|++.|+..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0 0 0123578887766654
Q ss_pred ---------CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC---
Q psy12625 121 ---------LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP--- 187 (612)
Q Consensus 121 ---------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p--- 187 (612)
.+||.|++.|... .....++.++++.+||... .++++.+|||||||||+|||||+.+|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~---------~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN---------IPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT---------CHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred ccCCHHHHhhCCHHHHHHHHhc---------chhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 3678888776421 1234567889999999764 58899999999999999999999875
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChhh
Q psy12625 188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLVP 258 (612)
Q Consensus 188 ~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 258 (612)
+||||||||+|||+.+...+++.|++++++|.|||+++||++ . ...||+|++| ++|++++.|+++++..
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-V-IKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 799999999999999999999999999988999999999975 3 4679999999 8999999999998753
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=2.9e-31 Score=307.70 Aligned_cols=203 Identities=21% Similarity=0.299 Sum_probs=154.3
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHH-C----CCCC---CCCC--Ccee------EEEECCEeccc-----hH
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILA-G----YRRP---KKTE--TNSG------YIEINETRLQD-----HR 103 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~-g----~~~p---~~~~--~~~G------~I~~~g~~~~~-----~~ 103 (612)
+|+|||++|++||+++|+|+||||||||+++|. | ...+ ..+. ...| .|.+++.++.. ..
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 699999999999999999999999999999853 2 2221 0010 0123 36667766421 00
Q ss_pred -------h---------hccceEEEccCCCCC----------------------C-------------------------
Q psy12625 104 -------M---------LRKESCYIMQDNLLQ----------------------E------------------------- 120 (612)
Q Consensus 104 -------~---------~~~~i~yv~Q~~~l~----------------------~------------------------- 120 (612)
. ..+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0 013457777753221 1
Q ss_pred -------CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHHhhCC---CE
Q psy12625 121 -------LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSNP---SI 189 (612)
Q Consensus 121 -------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~p---~i 189 (612)
.+||.|++.+... . . ..+++.++++.+||.. ..++++.+|||||||||+||++|+.+| ++
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~l 887 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------I-A--GVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTV 887 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------C-H--HHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEE
T ss_pred CCHHHHhhccHHHHHHHhhc------c-h--HHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCE
Confidence 2567777665321 1 1 1234578999999987 689999999999999999999999865 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChhh
Q psy12625 190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLVP 258 (612)
Q Consensus 190 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 258 (612)
|||||||+|||+.++..+++.|++++++|.|||+++||+. . ...||+|++| ++|++++.|+++++..
T Consensus 888 LILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 888 YILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-V-IKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 9999999999999999999999999988999999999975 4 4789999999 7899999999987643
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=5.4e-29 Score=269.24 Aligned_cols=204 Identities=12% Similarity=0.145 Sum_probs=149.4
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCC---------------------------------CCce
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT---------------------------------ETNS 89 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~---------------------------------~~~~ 89 (612)
..+++++|+++++| +++|+|||||||||||++|+++..+... .+.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 9999999999999999999887653100 0236
Q ss_pred eEEEECCEeccc--hHhhc-cceEEEccCCCCCCCCCHHHHHHHHHHhcc-----------------------CCC----
Q psy12625 90 GYIEINETRLQD--HRMLR-KESCYIMQDNLLQELLTVEESLTVAAHLKL-----------------------GNQ---- 139 (612)
Q Consensus 90 G~I~~~g~~~~~--~~~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~-----------------------~~~---- 139 (612)
|++.+||+++.. ...+. ..+++++|++.++.. +..+...+...... ...
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 899999999643 23333 458999999876543 55544443221100 000
Q ss_pred CC------------------------------HHHHHHHHHHHHHHcCCccc-----------------------cC---
Q psy12625 140 YS------------------------------RKAKESKVDSIADSLSISTC-----------------------KN--- 163 (612)
Q Consensus 140 ~~------------------------------~~~~~~~v~~~l~~lgL~~~-----------------------~~--- 163 (612)
+. -....+.+++.++.+++.+. ..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 00 00012345566777776431 00
Q ss_pred ----cccCC-CChhhhhHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc
Q psy12625 164 ----TLTKH-LSGGQKKRLSIALELLSNP--SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236 (612)
Q Consensus 164 ----~~~~~-LSgGerqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~ 236 (612)
+.++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++ ++...|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 22223 6999999999999999999 9999999999999999999999999998 689999999997 356899
Q ss_pred cceeee----cCCeEEEec
Q psy12625 237 DYLYVL----TEGYCTYQG 251 (612)
Q Consensus 237 D~v~~L----~~G~iv~~G 251 (612)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 899987654
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-32 Score=298.25 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=150.3
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee-E-EEECCEeccchHhhccceEEEccCCC---CCC
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG-Y-IEINETRLQDHRMLRKESCYIMQDNL---LQE 120 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G-~-I~~~g~~~~~~~~~~~~i~yv~Q~~~---l~~ 120 (612)
+.++|+++++|++++|+||||||||||+|+|+|+.+| .+| + |.+||. .++.++|+||+.. +.+
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-----~~G~~pI~vdg~-------~~~~i~~vpq~~~l~~~~~ 195 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK-----FNAYQPLYINLD-------PQQPIFTVPGCISATPISD 195 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH-----HHCCCCEEEECC-------TTSCSSSCSSCCEEEECCS
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc-----cCCceeEEEcCC-------ccCCeeeeccchhhccccc
Confidence 3478999999999999999999999999999999875 689 8 999982 2567999999984 445
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHH--HhhCCCE----EEEeC
Q psy12625 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALE--LLSNPSI----IFLDE 194 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a--L~~~p~i----lllDE 194 (612)
.+||+||+ ++.....+. ..++++.++++.+|+++..+ +.+|||||||||+|||+ |+.+|++ |||||
T Consensus 196 ~~tv~eni-~~~~~~~~~-----~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 196 ILDAQLPT-WGQSLTSGA-----TLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CCCTTCTT-CSCBCBSSC-----CSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred ccchhhhh-cccccccCc-----chHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 67999988 543221110 01234567788899988776 88999999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--h---HHHhcccc-----eeeec-CCeEEEecCccCh
Q psy12625 195 -PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS--A---SLLNMADY-----LYVLT-EGYCTYQGTVPGL 256 (612)
Q Consensus 195 -PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~--~---~i~~~~D~-----v~~L~-~G~iv~~G~~~~~ 256 (612)
||++||+. ...+.+++++ .+.|+|+++|+.. . .+.+++|+ |++|+ +|+++ .|+++++
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 5555544443 4788999999976 1 45689999 99999 99999 8988665
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=4.8e-30 Score=251.83 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=105.5
Q ss_pred cccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc-chHhhccceEEEccCCC
Q psy12625 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ-DHRMLRKESCYIMQDNL 117 (612)
Q Consensus 39 ~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~-~~~~~~~~i~yv~Q~~~ 117 (612)
+++++.+|+|+ ++||+++|+||||||||||+|+|+|+ +| .+|+|. +.++. .....++.+||++|++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-----~~G~I~--~~~~~~~~~~~~~~ig~v~q~~- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL-----QSKQVS--RIILTRPAVEAGEKLGFLPGTL- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH-----HTTSCS--EEEEEECSCCTTCCCCSSCC---
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC-----cCCeee--eEEecCCchhhhcceEEecCCH-
Confidence 34667899996 89999999999999999999999999 86 456663 22211 1123467899999976
Q ss_pred CCCCCCHHHHH-HHHH----HhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEE
Q psy12625 118 LQELLTVEESL-TVAA----HLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFL 192 (612)
Q Consensus 118 l~~~lTv~e~l-~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illl 192 (612)
+||+ .+.. .+. ... ..++++++++. |+ ||||||+|||||+.+|++|||
T Consensus 76 -------~enl~~~~~~~~~~~~--~~~----~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllL 128 (208)
T 3b85_A 76 -------NEKIDPYLRPLHDALR--DMV----EPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVIL 128 (208)
T ss_dssp -----------CTTTHHHHHHHT--TTS----CTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEE
T ss_pred -------HHHHHHHHHHHHHHHH--Hhc----cHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEE
Confidence 3444 2211 111 001 12346667765 54 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 193 DEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 193 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
||||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 129 DEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 129 DEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp CSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred eCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999999 889999999998 6789999 999975
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=1.8e-26 Score=245.47 Aligned_cols=85 Identities=22% Similarity=0.368 Sum_probs=78.6
Q ss_pred CcccCCCChhhhhHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc
Q psy12625 163 NTLTKHLSGGQKKRLSIALELL------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236 (612)
Q Consensus 163 ~~~~~~LSgGerqRv~ia~aL~------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~ 236 (612)
++++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||+++||+. ..+.+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhC
Confidence 4678899999999999999999 699999999999999999999999999999888999999999974 37889
Q ss_pred cceeeecCCeEEE
Q psy12625 237 DYLYVLTEGYCTY 249 (612)
Q Consensus 237 D~v~~L~~G~iv~ 249 (612)
|++++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999864
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=6e-26 Score=237.56 Aligned_cols=205 Identities=20% Similarity=0.238 Sum_probs=130.0
Q ss_pred cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCC---------------C--------------------------
Q psy12625 47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK---------------T-------------------------- 85 (612)
Q Consensus 47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~---------------~-------------------------- 85 (612)
+++++++.+| +++|+||||||||||+++|..+..... +
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 999999999999999999995541000 0
Q ss_pred ----CCceeEEEECCEeccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhc-----------cCCCCCHHH----
Q psy12625 86 ----ETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK-----------LGNQYSRKA---- 144 (612)
Q Consensus 86 ----~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~-----------~~~~~~~~~---- 144 (612)
...+|.+.+||++... .....+.+++.+|+..+.+.-++.+++.....-+ .+....++-
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1124788999988532 1223345665555544433233333332211000 000000000
Q ss_pred ----------------HHHHHHHHHHH-cCC----ccccCcccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCCC
Q psy12625 145 ----------------KESKVDSIADS-LSI----STCKNTLTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTGL 199 (612)
Q Consensus 145 ----------------~~~~v~~~l~~-lgL----~~~~~~~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsgL 199 (612)
...++.+.++. +++ .+..++++..||||||||++||++|+ .+|++++|||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 00111222332 111 23456778899999999999999997 578999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccce--eeecCCe-EEEecCccC
Q psy12625 200 DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL--YVLTEGY-CTYQGTVPG 255 (612)
Q Consensus 200 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v--~~L~~G~-iv~~G~~~~ 255 (612)
|+..+..+.+.|++++ +|.+||+++|++. +.+.||++ ++|.+|. .+.....++
T Consensus 255 D~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999985 5889999999963 57899987 7888874 444455544
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=5e-28 Score=259.89 Aligned_cols=176 Identities=12% Similarity=0.112 Sum_probs=141.8
Q ss_pred cccccceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch
Q psy12625 43 KDILKDISGVFVSKE--------------------LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge--------------------~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~ 102 (612)
+.+|++||+++++|+ +++|+||||||||||+|+|+|+.+| .+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p-----~~GsI~~~g~~~t-- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE-----EEGAAKTGVVEVT-- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT-----STTSCCCCC------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc-----cCceEEECCeecc--
Confidence 568999999999999 9999999999999999999999886 5799999887632
Q ss_pred HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChh--hhhHHHHH
Q psy12625 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG--QKKRLSIA 180 (612)
Q Consensus 103 ~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG--erqRv~ia 180 (612)
+ .++++|++ .++.+|+.|++.+.. + +.+++++++.+++.+.. ..+. |||| ||||+.||
T Consensus 109 ---~--~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 109 ---M--ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIA 168 (413)
T ss_dssp ---C--CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHH
T ss_pred ---e--eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHH
Confidence 1 27899985 567788888764421 0 13478889999998763 3333 9999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCCch-HHHhccccee
Q psy12625 181 LELLS----------NPSIIFLDEPTTGLDYLNATNLVKLLRDMA-----HQ----GTMIICTLHQPSA-SLLNMADYLY 240 (612)
Q Consensus 181 ~aL~~----------~p~illlDEPtsgLD~~~~~~i~~~l~~l~-----~~----g~tvi~~~H~~~~-~i~~~~D~v~ 240 (612)
++|+. +|++++|||||+|||+.++.++++.++++. +. ..+|++++|+... .+.+++|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999985 23 3678899998763 2778888885
Q ss_pred -eecCC
Q psy12625 241 -VLTEG 245 (612)
Q Consensus 241 -~L~~G 245 (612)
.|.+|
T Consensus 249 ~~Lpeg 254 (413)
T 1tq4_A 249 SDLPIY 254 (413)
T ss_dssp HHSCGG
T ss_pred HhCccc
Confidence 45444
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=4.7e-26 Score=216.54 Aligned_cols=143 Identities=18% Similarity=0.190 Sum_probs=101.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC-CCCHHH
Q psy12625 48 DISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE-LLTVEE 126 (612)
Q Consensus 48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~-~lTv~e 126 (612)
|||+++++||+++|+||||||||||+|++.+-.. .+ .....+ ++++|++.-.. .-++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~-----------~~------~~d~~~---g~~~~~~~~~~~~~~~~~ 60 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE-----------VI------SSDFCR---GLMSDDENDQTVTGAAFD 60 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG-----------EE------EHHHHH---HHHCSSTTCGGGHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe-----------EE------ccHHHH---HHhcCcccchhhHHHHHH
Confidence 6899999999999999999999999999653211 11 112222 56667642110 001111
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q psy12625 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL---- 202 (612)
Q Consensus 127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~---- 202 (612)
.+ .... +.....|.....+. ....|||||||++||++++.+|++++|||||++||+.
T Consensus 61 ~~-----------------~~~~-~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 61 VL-----------------HYIV-SKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp HH-----------------HHHH-HHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred HH-----------------HHHH-HHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 11 1111 12223455544443 2446999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 203 ------------NATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 203 ------------~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
.+.++.+.|++++++|.|+|+++||+.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 669999999999878999999999975
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=1.1e-25 Score=215.68 Aligned_cols=147 Identities=10% Similarity=0.092 Sum_probs=104.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchH--hhccceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR--MLRKESCYIMQDNLLQELLTVEESLTVAAHLK 135 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~--~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~ 135 (612)
.++|+||||||||||+|+|+|++. |.++|.+..+.. ..++.+||++|+. ++.+++ + + +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~--~ 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-S--S 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-E--E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-H--h
Confidence 589999999999999999999864 223333321111 3467899999975 222222 0 0 0
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHH
Q psy12625 136 LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALE-----LLSNPSIIFLDE--PTTGLDYLNATNLV 208 (612)
Q Consensus 136 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a-----L~~~p~illlDE--PtsgLD~~~~~~i~ 208 (612)
.. .. -++..++++.+||||||||++||++ ++.+|++++||| ||++||+..+..+.
T Consensus 62 ~~--~~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 62 KF--FT----------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp TT--CC----------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred hc--CC----------------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 00 00 0135677888999999999999996 999999999999 99999999999999
Q ss_pred HHHHHHHhCCCEEEEEec--CCchHHHhcccceeeecCCeEEE
Q psy12625 209 KLLRDMAHQGTMIICTLH--QPSASLLNMADYLYVLTEGYCTY 249 (612)
Q Consensus 209 ~~l~~l~~~g~tvi~~~H--~~~~~i~~~~D~v~~L~~G~iv~ 249 (612)
+.+++ .+.|+|+++| +....+..++|+ .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 88865 5677888886 223456677776 5577665
No 72
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.90 E-value=4.1e-28 Score=237.74 Aligned_cols=183 Identities=15% Similarity=0.032 Sum_probs=126.8
Q ss_pred ccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC
Q psy12625 40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119 (612)
Q Consensus 40 ~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~ 119 (612)
.+.+.+++| .++++||+++|+||||||||||+|+|+|+.+. ..+.+.+.+.+.. ...++.++|++|++..+
T Consensus 6 ~~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-----i~~~~~~~~~~~~--~~~~~~i~~~~q~~~~~ 76 (207)
T 1znw_A 6 PDTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-----LHFSVSATTRAPR--PGEVDGVDYHFIDPTRF 76 (207)
T ss_dssp ---------------CCCEEEEECSTTSSHHHHHHHHHHHSTT-----CEECCCEESSCCC--TTCCBTTTBEECCHHHH
T ss_pred CCCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc-----eEEcccccccCCc--ccccCCCeeEecCHHHH
Confidence 345678898 68999999999999999999999999999752 2333222222211 12356799999998888
Q ss_pred CCCCHHHHHHHHHHh----ccCCCCCHHHHHHHHHHH------HHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCE
Q psy12625 120 ELLTVEESLTVAAHL----KLGNQYSRKAKESKVDSI------ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSI 189 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l----~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~i 189 (612)
+.+|+.|++...... .. ...++++.++++++. ++.+|+.+..+++++.|| +|+.+|++
T Consensus 77 ~~~~~~~~l~~~~~~~~n~~~-~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~ 144 (207)
T 1znw_A 77 QQLIDQGELLEWAEIHGGLHR-SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSW 144 (207)
T ss_dssp HHHHHTTCEEEEEEEGGGTEE-EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCH
T ss_pred HHHHhcCCceeehhhcCchhh-cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCH
Confidence 777777765321100 10 012344455666665 667778777888888888 89999999
Q ss_pred EEEeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 190 IFLDEPTTGL----DYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 190 lllDEPtsgL----D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
++|||||+|+ |+..+.++.+.++++++ +|.|+|+++||+. ++.++||++++|..
T Consensus 145 ~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 145 QDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 9999999998 78899999999999975 6899999999976 68999999999853
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.90 E-value=3.7e-28 Score=250.88 Aligned_cols=168 Identities=13% Similarity=0.150 Sum_probs=126.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| + +++|+|+|+++++|++++|+||||||||||+++|+|++ +|+|.
T Consensus 101 ~i~~~~vs~~y----------~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--------~G~I~------ 155 (305)
T 2v9p_A 101 FFNYQNIELIT----------F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--------GGSVL------ 155 (305)
T ss_dssp HHHHTTCCHHH----------H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--------TCEEE------
T ss_pred eEEEEEEEEEc----------C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--------CceEE------
Confidence 47788888765 3 57999999999999999999999999999999999986 37773
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHH-HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEE-SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e-~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
+|++|++.+++ .|++| |+.+.. ..++ .+.+.++.+ |.+..+ ..+||||||||
T Consensus 156 ----------~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR-- 208 (305)
T 2v9p_A 156 ----------SFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK-- 208 (305)
T ss_dssp ----------CGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC--
T ss_pred ----------EEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH--
Confidence 45667766665 36665 654421 1111 344555553 443344 67899999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP 258 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 258 (612)
||||+.+|+||| ||+||+.++..+.. .+|++. ..+.+|+| +|++|++++.|+++++..
T Consensus 209 -ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~ 266 (305)
T 2v9p_A 209 -AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKS 266 (305)
T ss_dssp -CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHH
T ss_pred -HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHH
Confidence 999999999999 99999999988862 178875 36889999 999999999999988744
Q ss_pred HHh
Q psy12625 259 YLS 261 (612)
Q Consensus 259 ~f~ 261 (612)
+|.
T Consensus 267 ~y~ 269 (305)
T 2v9p_A 267 FFV 269 (305)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=7.1e-25 Score=227.03 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=136.1
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hhh--ccceEEEccCCC
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RML--RKESCYIMQDNL 117 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~--~~~i~yv~Q~~~ 117 (612)
++++|+++++|++++|+||||||||||++.|+|+++| .+|+|.++|.++... ..+ +..++|++|++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-----~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~ 164 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-----EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 164 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-----TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence 3578899999999999999999999999999999875 479999999886432 122 357999999998
Q ss_pred -CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCC--EEEEeC
Q psy12625 118 -LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPS--IIFLDE 194 (612)
Q Consensus 118 -l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~--illlDE 194 (612)
+++.+|++|++.++.... .. ..+++.+|+.+..++++.+|| |||++|||+|+.+|+ +|+||
T Consensus 165 ~~~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD- 228 (302)
T 3b9q_A 165 KAKAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD- 228 (302)
T ss_dssp CCCHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-
T ss_pred ccCHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-
Confidence 889999999998764211 10 135677899888888899999 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHhcccceeeecCCeE
Q psy12625 195 PTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPS--------ASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 195 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~~L~~G~i 247 (612)
||+|||+.++ ++++.+ .|.|+|++||... ..+....+.|..+..|+.
T Consensus 229 ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 229 GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9999999865 345554 5899999999432 122334456677776653
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.88 E-value=3e-26 Score=248.76 Aligned_cols=194 Identities=13% Similarity=0.078 Sum_probs=152.3
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE-
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET- 97 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~- 97 (612)
..++.+|+++.|. .++.+|+++ +++.+||+++|+|||||||||||++|+|+.+| ..|.|.++|+
T Consensus 130 ~~l~~~~v~~~~~---------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-----~~G~i~~~G~r 194 (438)
T 2dpy_A 130 NPLQRTPIEHVLD---------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA-----DVIVVGLIGER 194 (438)
T ss_dssp CTTTSCCCCSBCC---------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC-----SEEEEEEESCC
T ss_pred CceEEeccceecC---------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC-----CeEEEEEecee
Confidence 3467778776651 146799999 99999999999999999999999999999875 6899999998
Q ss_pred --eccc-------hHhhccceEEEccC-CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccC
Q psy12625 98 --RLQD-------HRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167 (612)
Q Consensus 98 --~~~~-------~~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~ 167 (612)
++.+ ...+++.++|++|+ +..++.+||.+|+.+.+...... .+++ ....| .+.
T Consensus 195 ~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~~v---------~~~ld-~l~ 257 (438)
T 2dpy_A 195 GREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQHV---------LLIMD-SLT 257 (438)
T ss_dssp HHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TCEE---------EEEEE-CHH
T ss_pred cHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CCCH---------HHHHH-hHH
Confidence 4322 12356789999995 55677789999988765432100 0001 11112 256
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCchHHHhcccc
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH---Q-GT-----MIICTLHQPSASLLNMADY 238 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tvi~~~H~~~~~i~~~~D~ 238 (612)
.+|+|| ||++|| +.+|++ |+|||+.....+.++++++.+ + |. ||++++||.+ ..++|+
T Consensus 258 ~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~ 324 (438)
T 2dpy_A 258 RYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADS 324 (438)
T ss_dssp HHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHH
T ss_pred HHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhce
Confidence 799999 999999 889988 999999999999999999876 3 64 9999999987 467999
Q ss_pred eeeecCCeEEEecCccChh
Q psy12625 239 LYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 239 v~~L~~G~iv~~G~~~~~~ 257 (612)
+++|.+|+++..|++++..
T Consensus 325 v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 325 ARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHSSEEEEECHHHHHTT
T ss_pred EEEEeCcEEEEeCCHHHcc
Confidence 9999999999998876553
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.87 E-value=7.5e-25 Score=223.47 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=100.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG 137 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~ 137 (612)
.++|+||||||||||+|+|+|+..| .+|+|.++|+++.. ...++.++|++|++.+++.+||.||+.++.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~-----~~G~i~~~g~~i~~-~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS-----RKASSWNREEKIPK-TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCC-CCSCCEEEESCC----CCEEEEECCCC--CCSBC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-----CCCccccCCcccCc-ceeeeeeEEEeecCCCcCCceEEechhhhhhccc-
Confidence 4789999999999999999999886 58999999988532 3345789999999999999999999988653321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy12625 138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217 (612)
Q Consensus 138 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 217 (612)
. ...+.+.+.++ .+..+..+.+||||||||+++||+++. ++++||||+|||+.. .+.++++++.
T Consensus 77 -~----~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~ 140 (270)
T 3sop_A 77 -E----NCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV 140 (270)
T ss_dssp -T----TCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT
T ss_pred -H----HHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc
Confidence 1 11122333333 455667788999999999999999876 999999999999987 5666667666
Q ss_pred CCEEEEEecCC
Q psy12625 218 GTMIICTLHQP 228 (612)
Q Consensus 218 g~tvi~~~H~~ 228 (612)
.+||+++|..
T Consensus 141 -~~vI~Vi~K~ 150 (270)
T 3sop_A 141 -VNIIPVIAKA 150 (270)
T ss_dssp -SEEEEEETTG
T ss_pred -CcEEEEEecc
Confidence 8888888874
No 77
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.87 E-value=2.1e-23 Score=218.82 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=109.1
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCH
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTV 124 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv 124 (612)
+++++|+.+++|++++|+||||||||||+|+|+|+++| .+|.|.++|.+.......++.+++++|
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-----~~g~i~i~~~~e~~~~~~~~~i~~~~g---------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-----EERIISIEDTEEIVFKHHKNYTQLFFG---------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-----TSCEEEEESSCCCCCSSCSSEEEEECB----------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-----CCcEEEECCeeccccccchhEEEEEeC----------
Confidence 78999999999999999999999999999999999986 579999998652111112344444430
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy12625 125 EESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204 (612)
Q Consensus 125 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 204 (612)
|||+||++||+||..+|+++++||||+
T Consensus 225 ----------------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~------- 251 (330)
T 2pt7_A 225 ----------------------------------------------GNITSADCLKSCLRMRPDRIILGELRS------- 251 (330)
T ss_dssp ----------------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------
T ss_pred ----------------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------
Confidence 899999999999999999999999998
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 205 ~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
.++.+.|+.+...+.|+++|+|+++ ..+.+||+++|.+|+
T Consensus 252 ~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2456778877655568999999986 578899999999885
No 78
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.87 E-value=6.9e-26 Score=235.72 Aligned_cols=160 Identities=8% Similarity=-0.018 Sum_probs=121.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHH
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAA 132 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 132 (612)
+++|++++|+||||||||||+++|+|+++|. .|. +.+++|+|++.+++. |++||+.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~-----~G~---------------~~v~~v~qd~~~~~~-t~~e~~~~~~ 145 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW-----DHH---------------PRVDLVTTDGFLYPN-AELQRRNLMH 145 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS-----TTC---------------CCEEEEEGGGGBCCH-HHHHHTTCTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc-----CCC---------------CeEEEEecCccCCcc-cHHHHHHHHH
Confidence 7999999999999999999999999998752 221 458999999999888 9999975421
Q ss_pred HhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy12625 133 HLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212 (612)
Q Consensus 133 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~ 212 (612)
. ...+.....+.+.+.++.++ .+..+..+..|||||+||+++|++++.+|+|+|+|||++.+|+.. .
T Consensus 146 ~----~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~ 212 (312)
T 3aez_A 146 R----KGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------L 212 (312)
T ss_dssp C----TTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------C
T ss_pred h----cCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------H
Confidence 1 12223334567788899888 666677888999999999999999999999999999999998621 1
Q ss_pred HHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 213 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
.+.+.--.+|++.|+.........+|.+.+.+|+
T Consensus 213 ~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 213 MVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp CGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 2222112345556665544556678887777765
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.86 E-value=8.6e-24 Score=223.16 Aligned_cols=173 Identities=14% Similarity=0.186 Sum_probs=136.0
Q ss_pred cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hhh--ccceEEEccCCC-
Q psy12625 47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RML--RKESCYIMQDNL- 117 (612)
Q Consensus 47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~--~~~i~yv~Q~~~- 117 (612)
+++|+++++|++++|+||||||||||++.|+|+++| .+|+|.++|.++... ..+ +..++|++|++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-----~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~ 222 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-----EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 222 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-----TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-----cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc
Confidence 468889999999999999999999999999999875 479999999886432 122 457999999988
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCC--EEEEeCC
Q psy12625 118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPS--IIFLDEP 195 (612)
Q Consensus 118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~--illlDEP 195 (612)
+++.+|++|++.++... ... ..+++.+|+.+..++++.+|| |||++|||+|+.+|+ +|+|| |
T Consensus 223 ~~p~~tv~e~l~~~~~~----~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-p 286 (359)
T 2og2_A 223 AKAATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-G 286 (359)
T ss_dssp CCHHHHHHHHHHHHHHT----TCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-G
T ss_pred cChhhhHHHHHHHHHhC----CCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-C
Confidence 88999999999876421 110 135677899888888899999 999999999999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHhcccceeeecCCe
Q psy12625 196 TTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPS--------ASLLNMADYLYVLTEGY 246 (612)
Q Consensus 196 tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~~L~~G~ 246 (612)
|+|||+.++. +++.+ .|.|+|++||... +......+.|..+..|+
T Consensus 287 ttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 287 NTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 9999988653 45554 5899999999532 12233445666666664
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.86 E-value=9.7e-22 Score=207.79 Aligned_cols=84 Identities=18% Similarity=0.159 Sum_probs=76.0
Q ss_pred ccC-CCChhhhhHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q psy12625 165 LTK-HLSGGQKKRLSIALELL---------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN 234 (612)
Q Consensus 165 ~~~-~LSgGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~ 234 (612)
+++ .||||||||++||++|+ .+|+||+|||||++||+..+..+++.++++. .|+|++||. . .
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~--- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P--- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---
Confidence 344 69999999999999999 8999999999999999999999999998874 689999994 3 2
Q ss_pred cccceeeecCCeEEEecCccCh
Q psy12625 235 MADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 235 ~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
.+|++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998876
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.85 E-value=7.8e-26 Score=223.61 Aligned_cols=178 Identities=16% Similarity=0.104 Sum_probs=116.9
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch---HhhccceEEEccCCCCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH---RMLRKESCYIMQDNLLQ 119 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~---~~~~~~i~yv~Q~~~l~ 119 (612)
+.-|+|||+++++|++++|+||||||||||+|+|+|+. | |+|.+ |.++... ...++.++|++|++..+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-------G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-------NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIF 80 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-------TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-------CcEEE-eecccCCCCCcccccCCeEEECCHHHH
Confidence 45799999999999999999999999999999999976 3 67888 7654321 12356799999987765
Q ss_pred CCCCH-HHHHH---HHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH-----HHHHhhCCCEE
Q psy12625 120 ELLTV-EESLT---VAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI-----ALELLSNPSII 190 (612)
Q Consensus 120 ~~lTv-~e~l~---~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i-----a~aL~~~p~il 190 (612)
+.++. .+++. +..+.. ..+ .+.++++++...+. ..+ .+||||||||++| +++++.+|+++
T Consensus 81 ~~~~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 81 EDKLKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHHHHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred HHhhhccchhhhhhcccccC---CCc----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 53321 11111 000000 111 23466677654432 122 5799999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCchHHHhcccceee
Q psy12625 191 FLDEPTTGLDYLNATNLVKLLRDMAH-------QGTMIICTLHQPSASLLNMADYLYV 241 (612)
Q Consensus 191 llDEPtsgLD~~~~~~i~~~l~~l~~-------~g~tvi~~~H~~~~~i~~~~D~v~~ 241 (612)
+|||||+++|..+...+.+.++++.+ .+...|+++|++. +.++..|+++.
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii~ 206 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYLL 206 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHHH
Confidence 99999999999999999988887643 3456667777754 56667777664
No 82
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.85 E-value=3.2e-21 Score=203.15 Aligned_cols=80 Identities=29% Similarity=0.414 Sum_probs=72.5
Q ss_pred cCcccCCCChhhhh------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc
Q psy12625 162 KNTLTKHLSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM 235 (612)
Q Consensus 162 ~~~~~~~LSgGerq------Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~ 235 (612)
.++++.+||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||++|||+ ++.+.
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~ 319 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDA 319 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHh
Confidence 45678899999999 67788888899999999999999999999999999999988889999999995 46789
Q ss_pred ccceeeec
Q psy12625 236 ADYLYVLT 243 (612)
Q Consensus 236 ~D~v~~L~ 243 (612)
||++++|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999986
No 83
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.84 E-value=1.9e-22 Score=208.08 Aligned_cols=185 Identities=14% Similarity=0.101 Sum_probs=124.8
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee-EEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG-YIEINETRLQDHRMLRKESCYIMQDNLLQEL 121 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G-~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~ 121 (612)
..+|+++++.+++|++++|+||||||||||++.|+|...| .+| .|.+.+.+.. ...+++++..+.|+..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-----~~G~~v~~~~~e~~-~~~~~~r~~~~~~~~~---- 91 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT-----AMGKKVGLAMLEES-VEETAEDLIGLHNRVR---- 91 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH-----TSCCCEEEEESSSC-HHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-----HcCCeEEEEeCcCC-HHHHHHHHHHHHcCCC----
Confidence 5689999999999999999999999999999999998765 246 6655443322 2233333333333322
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh-hhHHHHHHHHhhCCCEEEEeCCCC---
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ-KKRLSIALELLSNPSIIFLDEPTT--- 197 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~~~p~illlDEPts--- 197 (612)
+++.+++.... + ++++.++.++++++..++. .+..+.++|.+| +||+. |+++..+|+++++||||+
T Consensus 92 ~~~~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 92 LRQSDSLKREI-I------ENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp GGGCHHHHHHH-H------HHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred hhhccccccCC-C------CHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 12234443321 1 1222334455555433332 223346789998 67777 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHh-CCCEEEEEecCCc-h--------------------HHHhcccceeeecCCeE
Q psy12625 198 G---LDY-LNATNLVKLLRDMAH-QGTMIICTLHQPS-A--------------------SLLNMADYLYVLTEGYC 247 (612)
Q Consensus 198 g---LD~-~~~~~i~~~l~~l~~-~g~tvi~~~H~~~-~--------------------~i~~~~D~v~~L~~G~i 247 (612)
+ +|. ....++++.|+++++ .|.|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 677889999999987 5999999999951 2 57789999999998874
No 84
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.84 E-value=5.9e-23 Score=216.47 Aligned_cols=192 Identities=14% Similarity=0.118 Sum_probs=140.4
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
..++.+|+++.|. .+..+|+++ +++.+||+++|+||||||||||+++|+|+.+| ..|.|.+.|++
T Consensus 44 ~~i~~~~l~~~~~---------tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~-----~~g~i~~~G~~ 108 (347)
T 2obl_A 44 DPLLRQVIDQPFI---------LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA-----DIIVLALIGER 108 (347)
T ss_dssp CSTTCCCCCSEEC---------CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC-----SEEEEEEESCC
T ss_pred CCeeecccceecC---------CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CEEEEEEeccc
Confidence 3467788887762 146799999 99999999999999999999999999999886 57999998875
Q ss_pred ccch---------HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc--CcccC
Q psy12625 99 LQDH---------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK--NTLTK 167 (612)
Q Consensus 99 ~~~~---------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~~~ 167 (612)
..+. ..+++.+.+++|.+. +..+.+...... ..+.+.....|- +.. -+.+.
T Consensus 109 ~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~~-~vl~~ld~~~ 170 (347)
T 2obl_A 109 GREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQGK-NVLLMMDSVT 170 (347)
T ss_dssp HHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTTC-EEEEEEETHH
T ss_pred HHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhccc-cHHHHHhhHH
Confidence 2211 123456788887542 222322211100 001111111111 110 03567
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHhccccee
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH--QGT-----MIICTLHQPSASLLNMADYLY 240 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~ 240 (612)
.||+|| ||+++| +.+|++ |+|||+.....+.++++++.+ +|. ||++++||.+ ..+||+++
T Consensus 171 ~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~ 237 (347)
T 2obl_A 171 RYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVR 237 (347)
T ss_dssp HHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHH
T ss_pred HHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheE
Confidence 899999 899999 688887 999999999999999999874 577 8999999987 36799999
Q ss_pred eecCCeEEEecCccCh
Q psy12625 241 VLTEGYCTYQGTVPGL 256 (612)
Q Consensus 241 ~L~~G~iv~~G~~~~~ 256 (612)
+|.+|+++..|++++.
T Consensus 238 ~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 238 SILDGHIVLTRELAEE 253 (347)
T ss_dssp HHCSEEEEBCHHHHTT
T ss_pred EeeCcEEEEeCCHHHc
Confidence 9999999999988765
No 85
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=1.4e-21 Score=227.53 Aligned_cols=161 Identities=23% Similarity=0.302 Sum_probs=126.1
Q ss_pred HHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCH-----HHHHH
Q psy12625 73 LDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR-----KAKES 147 (612)
Q Consensus 73 L~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~-----~~~~~ 147 (612)
..|..++++| ..|+|.++|+++.+ +..+|+.|++.+...+.+...... ....+
T Consensus 385 ~~C~g~rl~~-----~~~~V~i~G~~i~~-----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 442 (916)
T 3pih_A 385 SVCGGRRLNR-----EALSVKINGLNIHE-----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIE 442 (916)
T ss_dssp TTTCSCCBCT-----TGGGEEETTEEHHH-----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH
T ss_pred hhcccccCCh-----HhcCcEECCccHHH-----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHH
Confidence 3445555554 57999999988632 223677788777554432211000 01123
Q ss_pred HHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy12625 148 KVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224 (612)
Q Consensus 148 ~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~ 224 (612)
+..+.+..+||.+. .++.+.+|||||||||+||++|+.+|+ +|+|||||+|||+.....+++.|++++++|.|||++
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34567888999865 689999999999999999999999887 999999999999999999999999999889999999
Q ss_pred ecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625 225 LHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV 257 (612)
Q Consensus 225 ~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 257 (612)
+||+. . ...||+|++| ++|++++.|+++++.
T Consensus 523 tHd~~-~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 523 EHDEE-V-IRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp CCCHH-H-HHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred eCCHH-H-HHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 99974 3 4569999999 899999999998764
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.83 E-value=4.4e-22 Score=200.01 Aligned_cols=171 Identities=11% Similarity=0.050 Sum_probs=108.6
Q ss_pred ccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC
Q psy12625 40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119 (612)
Q Consensus 40 ~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~ 119 (612)
.+++++|+|+|+++++|++++|+||||||||||+++|+|++. .+.++ ..++.++|++|++ ++
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG---------~~~~~--------~~~~~i~~v~~d~-~~ 70 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG---------QNEVE--------QRQRKVVILSQDR-FY 70 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHHT---------GGGSC--------GGGCSEEEEEGGG-GB
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc---------hhccc--------ccCCceEEEeCCc-Cc
Confidence 366789999999999999999999999999999999999642 22222 2467799999985 67
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCC
Q psy12625 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgL 199 (612)
+.+|+.|++.+...... ...+.....+.+.+.++.+ .+..+..+..+|+||+||+++ ++++.+|+++++|||....
T Consensus 71 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 71 KVLTAEQKAKALKGQYN-FDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp CCCCHHHHHHHHTTCCC-TTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred cccCHhHhhhhhccCCC-CCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 78999999876532211 0111111233445555543 456677889999999999988 5888899999999999888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-cccceeeecCCe
Q psy12625 200 DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN-MADYLYVLTEGY 246 (612)
Q Consensus 200 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~ 246 (612)
|.. +.++ .+.+|++++|+.. .+.+ +++++ .+|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR 180 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C---
T ss_pred cHH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC
Confidence 864 2222 3789999999743 3333 33434 5564
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.82 E-value=1.5e-20 Score=208.91 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=71.5
Q ss_pred ccCCC-ChhhhhHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee
Q psy12625 165 LTKHL-SGGQKKRLSIALELLSNP--SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241 (612)
Q Consensus 165 ~~~~L-SgGerqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 241 (612)
+++.| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||++||++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 35567 999999999999999999 99999999999999999999999999987 899999999974 4567999999
Q ss_pred ecCC
Q psy12625 242 LTEG 245 (612)
Q Consensus 242 L~~G 245 (612)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9665
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.82 E-value=1.7e-21 Score=230.41 Aligned_cols=173 Identities=15% Similarity=0.107 Sum_probs=122.0
Q ss_pred eeEEEEe-----EEEEEEeeccccccccccccccceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHCCCCCCCCC
Q psy12625 19 FNLLFQD-----ISYSALYYDTHSYSIKSKDILKDISGVFVS-------KELSVILGPSGSGKTKLLDILAGYRRPKKTE 86 (612)
Q Consensus 19 ~~l~~~~-----ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~ 86 (612)
..|+++| |++.+. +++.+++|+++.+++ |++++|+||||||||||||++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~---------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~---- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF---------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV---- 814 (1022)
T ss_dssp CCEEEEEECCCC---------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----
T ss_pred ceEEEEeccccEEEEEec---------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----
Confidence 3589999 887651 346799999999987 999999999999999999999 87641
Q ss_pred CceeEEEECCEeccchHhhccceE-EEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc
Q psy12625 87 TNSGYIEINETRLQDHRMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165 (612)
Q Consensus 87 ~~~G~I~~~g~~~~~~~~~~~~i~-yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 165 (612)
..++| ||||+.. .+||.|++. ..+|+.+.....
T Consensus 815 -------------------~aqiG~~Vpq~~~---~l~v~d~I~------------------------~rig~~d~~~~~ 848 (1022)
T 2o8b_B 815 -------------------MAQMGCYVPAEVC---RLTPIDRVF------------------------TRLGASDRIMSG 848 (1022)
T ss_dssp -------------------HHTTTCCEESSEE---EECCCSBEE------------------------EECC--------
T ss_pred -------------------HhheeEEeccCcC---CCCHHHHHH------------------------HHcCCHHHHhhc
Confidence 12345 9999763 345555431 112332222333
Q ss_pred cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeec
Q psy12625 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA-TNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~-~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
.+.+|+++++ +++|++++++|+++||||||+|+|+... ..+.+.|+.++++ |.++|++||++. .+...+|++.++
T Consensus 849 ~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~- 925 (1022)
T 2o8b_B 849 ESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR- 925 (1022)
T ss_dssp -CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-
T ss_pred hhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-
Confidence 4567777664 9999999999999999999999999984 5578999999876 999999999975 566789999887
Q ss_pred CCeEE--EecCcc
Q psy12625 244 EGYCT--YQGTVP 254 (612)
Q Consensus 244 ~G~iv--~~G~~~ 254 (612)
+|++. +.|+++
T Consensus 926 ~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 926 LGHMACMVENECE 938 (1022)
T ss_dssp EEEEEEC------
T ss_pred cCeEEEEEecCcc
Confidence 58887 555544
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=2.4e-23 Score=231.90 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=129.2
Q ss_pred cccccccceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHCCCCCCCCCCceeEEEECCEeccch-HhhccceEEEccCC
Q psy12625 41 KSKDILKDISG-VFVSKELSVILGPSGSGKTKLLDI--LAGYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIMQDN 116 (612)
Q Consensus 41 ~~~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~--l~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~Q~~ 116 (612)
+..++|++||+ .+++||+++|+||||||||||+++ ++|+.+| .+|.|+++|++.... ...++.+||++|++
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-----~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----DEPGVFVTFEETPQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSCHHHHHHHHGGGTCCHHHH
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCCEEEEEEeCCHHHHHHHHHHcCCChHHh
Confidence 35779999999 999999999999999999999999 7899875 479999999873211 23456789999975
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCC
Q psy12625 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196 (612)
Q Consensus 117 ~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPt 196 (612)
...++ +.+ .... . . +...++++.+++.+..++.+..||||| |+++++||||
T Consensus 98 ~~~~~------l~~---~~~~-~-~-----~~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe~t 148 (525)
T 1tf7_A 98 VDEGK------LFI---LDAS-P-D-----PEGQEVVGGFDLSALIERINYAIQKYR-------------ARRVSIDSVT 148 (525)
T ss_dssp HHTTS------EEE---EECC-C-C-----SSCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEECST
T ss_pred hccCc------EEE---EecC-c-c-----cchhhhhcccCHHHHHHHHHHHHHHcC-------------CCEEEECCHH
Confidence 43211 100 1100 0 0 011234455566666677777888886 5688999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHhcccceeeecCCe
Q psy12625 197 T-----GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS--------LLNMADYLYVLTEGY 246 (612)
Q Consensus 197 s-----gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~~L~~G~ 246 (612)
+ +||+..+..+.+++++++++|+|||+++|++... ...+||+|++|++|+
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 8 5699999999999999988899999999998742 345699999999854
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=6.6e-21 Score=212.24 Aligned_cols=156 Identities=10% Similarity=0.071 Sum_probs=123.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHH
Q psy12625 50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLT 129 (612)
Q Consensus 50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 129 (612)
++.+++|++++|+||||||||||++.++|...+ +|+ +.+.+++|++. .++.++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~------~G~---------------~vi~~~~ee~~----~~l~~~~- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA------NKE---------------RAILFAYEESR----AQLLRNA- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT------TTC---------------CEEEEESSSCH----HHHHHHH-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh------CCC---------------CEEEEEEeCCH----HHHHHHH-
Confidence 458999999999999999999999999998764 122 12455566541 1122221
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q psy12625 130 VAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL-----NA 204 (612)
Q Consensus 130 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~-----~~ 204 (612)
. +. ..+ +++ +...|+.+..+..+.+|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 329 --~--~~--g~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 329 --Y--SW--GMD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp --H--TT--SCC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred --H--Hc--CCC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 1 11 122 112 33567878888899999999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCc---------hHHHhcccceeeecCCe
Q psy12625 205 TNLVKLLRDMAHQGTMIICTLHQPS---------ASLLNMADYLYVLTEGY 246 (612)
Q Consensus 205 ~~i~~~l~~l~~~g~tvi~~~H~~~---------~~i~~~~D~v~~L~~G~ 246 (612)
..+.++++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999889999999999971 34667899999999887
No 91
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.81 E-value=8.2e-20 Score=211.40 Aligned_cols=135 Identities=24% Similarity=0.394 Sum_probs=113.8
Q ss_pred CCCCHHHHHHHHHHhccCCC---CCH---HHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC--CEE
Q psy12625 120 ELLTVEESLTVAAHLKLGNQ---YSR---KAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP--SII 190 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p--~il 190 (612)
..+||.|++.|..++.++.. ..+ ++..+++ +.++.+||... .++.+.+|||||||||+||++|..+| +++
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 34899999999777654320 000 2334455 45899999875 79999999999999999999999985 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625 191 FLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV 257 (612)
Q Consensus 191 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 257 (612)
+|||||+|||+.....+++.|++|++.|.|||+++|++. . ...||+|++| ++|++++.|+++++.
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999989999999999974 4 5689999999 789999999998764
No 92
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.81 E-value=3e-20 Score=214.67 Aligned_cols=184 Identities=20% Similarity=0.242 Sum_probs=133.3
Q ss_pred CCCCcHHHHHHHHHCCCCCCCC----CCceeEEEECCEeccchHh--hccceEEEccCCCC---CC----CCCHHHHHHH
Q psy12625 64 PSGSGKTKLLDILAGYRRPKKT----ETNSGYIEINETRLQDHRM--LRKESCYIMQDNLL---QE----LLTVEESLTV 130 (612)
Q Consensus 64 psGsGKSTLL~~l~g~~~p~~~----~~~~G~I~~~g~~~~~~~~--~~~~i~yv~Q~~~l---~~----~lTv~e~l~~ 130 (612)
.+..||++|.+.+....-|... .+.+|+|.++|+++.+... ....++++.|.+.. .. .++- ++...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 348 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA 348 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence 4567999999998875433211 1357899999988754211 11222232221110 00 0110 11111
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHH
Q psy12625 131 AAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP--SIIFLDEPTTGLDYLNATNL 207 (612)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~i 207 (612)
+..+ .++..++++ .++.+||.+. .++.+.+|||||||||+||++|..+| .+++|||||+|||+.....+
T Consensus 349 ~~~i-------~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L 420 (842)
T 2vf7_A 349 LQRM-------AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEAL 420 (842)
T ss_dssp HHHH-------HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHH
T ss_pred HHHH-------HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHH
Confidence 1111 133455666 6889999876 79999999999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChhh
Q psy12625 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLVP 258 (612)
Q Consensus 208 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 258 (612)
.++|++|++.|.|||+++|++. +.+.||+|++| ++|++++.|+++++..
T Consensus 421 ~~~l~~L~~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 421 LSALENLKRGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHHHHHTTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 9999999989999999999974 56789999999 7899999999987643
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.79 E-value=3e-20 Score=217.23 Aligned_cols=154 Identities=19% Similarity=0.161 Sum_probs=113.5
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHH--------HCCCCCCCCCCceeEEEECCEeccchHhhccceEEE
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDIL--------AGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYI 112 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l--------~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv 112 (612)
+.+.+++|+|+++++|++++|+||||||||||||++ .|...| .++.. ++.+
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp-----a~~~~----------------~~~~ 705 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP-----CESAE----------------VSIV 705 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS-----EEEEE----------------EECC
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc-----ccccc----------------chHH
Confidence 346799999999999999999999999999999999 443322 11100 1100
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH--hhCCCEE
Q psy12625 113 MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL--LSNPSII 190 (612)
Q Consensus 113 ~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~p~il 190 (612)
+ +++..+|+. +....++|+|++++..+|+++ +++|+++
T Consensus 706 ---d----------------------------------~i~~~ig~~---d~l~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 706 ---D----------------------------------CILARVGAG---DSQLKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ---S----------------------------------EEEEECC------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ---H----------------------------------HHHHhcCch---hhHHHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 0 011112221 223356888888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625 191 FLDEPTTGLDYLNATNL-VKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257 (612)
Q Consensus 191 llDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 257 (612)
||||||+|||+.....+ ..+++.+++ .|.++|++||+. ++..++|++..+.+|++...++.+++.
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcEE
Confidence 99999999999999888 677788876 599999999995 457899999999999999988877654
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.79 E-value=1.6e-19 Score=209.73 Aligned_cols=131 Identities=21% Similarity=0.346 Sum_probs=111.2
Q ss_pred CCCCHHHHHHHHHHhccCCCCCH----------HHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhC--
Q psy12625 120 ELLTVEESLTVAAHLKLGNQYSR----------KAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSN-- 186 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~-- 186 (612)
..+||.|.+.|..++.+ +. ++..+++ +.++.+||... .++.+.+|||||||||+||++|..+
T Consensus 467 ~~ltV~e~l~f~enl~l----~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~ 541 (993)
T 2ygr_A 467 CELSIADCADFLNALTL----GPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLV 541 (993)
T ss_dssp SHHHHHHHHHTTTTTTS----CHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCC
T ss_pred hhCCHHHHHHHHHhcCC----CHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCC
Confidence 44789999988544432 22 2334455 45889999875 7999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625 187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV 257 (612)
Q Consensus 187 p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 257 (612)
|++++|||||+|||+.....+.+.|++|++.|.|||+++||+. . .+.||+|++| ++|++++.|+++++.
T Consensus 542 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 542 GVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED-T-IEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp SCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred CcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH-H-HHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 5899999999999999999999999999989999999999974 3 5689999999 689999999998764
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.78 E-value=1.7e-20 Score=187.60 Aligned_cols=170 Identities=13% Similarity=0.084 Sum_probs=108.1
Q ss_pred ccceE-EEEeCCeEEEEECCCCCcHHHHHHHHH--CCCCCCCCCCceeEEEECCEeccc-hHhhccceEEEccCCCCCCC
Q psy12625 46 LKDIS-GVFVSKELSVILGPSGSGKTKLLDILA--GYRRPKKTETNSGYIEINETRLQD-HRMLRKESCYIMQDNLLQEL 121 (612)
Q Consensus 46 L~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~l~--g~~~p~~~~~~~G~I~~~g~~~~~-~~~~~~~i~yv~Q~~~l~~~ 121 (612)
|+++- +.+++|++++|+||||||||||+++|+ |+.++ ..|.+.+++..... .....+.+++++|+....+.
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 93 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-----GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGK 93 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTS
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCC
Confidence 44432 379999999999999999999999999 66332 24667777654221 12234567888876554454
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCC-
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD- 200 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD- 200 (612)
+++.++........ ....... ....+.++..+...+..-..+|+++++||||++||
T Consensus 94 ~~~~~~~~~~~~~~----------~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~ 150 (251)
T 2ehv_A 94 IAIVDGVSSVVGLP----------SEEKFVL-------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp EEEEC------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred EEEEEccccccccc----------cccceec-------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhh
Confidence 55444332211000 0000000 11123344444444444467999999999999998
Q ss_pred ----HHHHHHHHHHHHHHHhCCCEEEEEecCCchHH---------Hhcc-cceeeecC
Q psy12625 201 ----YLNATNLVKLLRDMAHQGTMIICTLHQPSASL---------LNMA-DYLYVLTE 244 (612)
Q Consensus 201 ----~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i---------~~~~-D~v~~L~~ 244 (612)
+..+..+.++++.++++|+|||+++|+... + ..+| |++++|++
T Consensus 151 ~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 151 LEEERKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp SSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEee
Confidence 677777999999998889999999999763 4 5788 99999953
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.78 E-value=6.9e-20 Score=185.81 Aligned_cols=132 Identities=20% Similarity=0.324 Sum_probs=100.4
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCc-eeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~-~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l 122 (612)
++|+++| +++|++++|+||||||||||+++|+|+++| . +|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~-----~~~G~I~~~g~~i~~~--~~~~~~~v~q~------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ-----TKSYHIITIEDPIEYV--FKHKKSIVNQR------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHH-----HCCCEEEEEESSCCSC--CCCSSSEEEEE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCC-----CCCCEEEEcCCcceee--cCCcceeeeHH-------
Confidence 5899999 999999999999999999999999999875 4 79999988764210 11112222221
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 202 (612)
.+|++. ..+ |++||++|..+|+++++|||| |+.
T Consensus 79 --------------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 --------------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp --------------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred --------------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 233321 112 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 203 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
+...++ +. ++.|.+|++++|+.+ ....+||++.|..
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 866544 33 457999999999975 4688999999864
No 97
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=3.6e-19 Score=164.87 Aligned_cols=83 Identities=29% Similarity=0.404 Sum_probs=75.0
Q ss_pred cCcccCCCChhhhhHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc
Q psy12625 162 KNTLTKHLSGGQKKRLSIA------LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM 235 (612)
Q Consensus 162 ~~~~~~~LSgGerqRv~ia------~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~ 235 (612)
.++++++||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ ++.+.
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHh
Confidence 4677899999999999876 899999999999999999999999999999999987789999999997 35789
Q ss_pred ccceeeec--CCe
Q psy12625 236 ADYLYVLT--EGY 246 (612)
Q Consensus 236 ~D~v~~L~--~G~ 246 (612)
||++++|+ +|.
T Consensus 129 ~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 129 ADHVIRISLENGS 141 (148)
T ss_dssp CSEEEEEEEETTE
T ss_pred CCEEEEEEcCCCe
Confidence 99999994 453
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=3.3e-21 Score=199.67 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=89.9
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC-CCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY-RRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~-~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~ 119 (612)
+++.+++++++++ +|+||||||||||++.|+|. ..| .+| +.++|.++..... .+.+++++|++...
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~-----~~g-i~~~g~~~~~t~~-~~~~~~~~q~~~~~ 75 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP-----ERV-ISGAAEKIERTVQ-IEASTVEIEERGVK 75 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---CC
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC-----CCC-cccCCcccCCcce-EeeEEEEecCCCcc
Confidence 6678999999998 99999999999999999997 553 567 8888876533212 35689999998888
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCC-
Q psy12625 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG- 198 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsg- 198 (612)
..+|+.|+..++..... .+..+..++. +.+..+.++.++|||||||+.+||+++ ++++||||++
T Consensus 76 ~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~------l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINC-----RDCFKTIISY------IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEEEEEEC----------------CTTHHHH------HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred cCcchhhhhhhhhhcCc-----HHHHHHHHHH------HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 88999998877543210 0000111222 123346778899999999999999885 9999999984
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc
Q psy12625 199 LDYLNATNLVKLLRDMAH-QGTMIICTLHQPS 229 (612)
Q Consensus 199 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~ 229 (612)
||+... +.++++.+ .+.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 66666665 3789999999964
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.77 E-value=4.2e-20 Score=215.44 Aligned_cols=155 Identities=11% Similarity=0.099 Sum_probs=106.8
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~ 121 (612)
++.|++|+|+++++|++++|+||||||||||||++++.... ...|. .+.. . ...++. -+.++
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~----aq~g~------~vpa-~--~~~i~~---~d~i~-- 720 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM----AQIGS------YVPA-E--EATIGI---VDGIF-- 720 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH----HHHTC------CBSS-S--EEEEEC---CSEEE--
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH----hhcCc------cccc-h--hhhhhH---HHHHH--
Confidence 57799999999999999999999999999999999864321 00010 0000 0 001111 11111
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~ 201 (612)
..+|+.+......+.+|+|++|++.|+++ +++|+++||||||+|||+
T Consensus 721 --------------------------------~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 721 --------------------------------TRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp --------------------------------EEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred --------------------------------HhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 12233333344456799999999999999 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHhcccceee-ecCCeEEE
Q psy12625 202 LNATNLV-KLLRDMAH-QGTMIICTLHQPSASLLNMADYLYV-LTEGYCTY 249 (612)
Q Consensus 202 ~~~~~i~-~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~ 249 (612)
.....+. .+++.+++ .|.++|++||++. +.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 9999998 77888876 6999999999964 4678887642 45555544
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.76 E-value=2.4e-21 Score=189.50 Aligned_cols=146 Identities=15% Similarity=0.078 Sum_probs=118.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC--CCCCHHHHHHH
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ--ELLTVEESLTV 130 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~ 130 (612)
.++|++++|+||||||||||+++|+|++.| .++|++|++.++ ..+|++++..+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------------~i~~v~~d~~~~~~~~~~~~~~~~~ 57 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------------------RVALLPMDHYYKDLGHLPLEERLRV 57 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------------------GEEEEEGGGCBCCCTTSCHHHHHHS
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------------------CeEEEecCccccCcccccHHHhcCC
Confidence 578999999999999999999999997641 489999998776 56799888654
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh----hHHHHHHHHhhCCCEEEEeCCCCC-------C
Q psy12625 131 AAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK----KRLSIALELLSNPSIIFLDEPTTG-------L 199 (612)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer----qRv~ia~aL~~~p~illlDEPtsg-------L 199 (612)
.. . .+.....+++.+.++.+++.+..+.++.++|+||| ||+++|++++.+|+++++||||++ |
T Consensus 58 ~~--~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 58 NY--D----HPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp CT--T----SGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred CC--C----ChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 21 1 11122345677888888888877888889999974 789999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEecCCc
Q psy12625 200 DYLNATNLVKLLRDMA-HQGTMIICTLHQPS 229 (612)
Q Consensus 200 D~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~ 229 (612)
|+.....+.+.+++.. ++|.|++.++|+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999998764 57899998888743
No 101
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.76 E-value=3.8e-18 Score=185.32 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=69.5
Q ss_pred ccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccccee
Q psy12625 165 LTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLY 240 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 240 (612)
.+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+++.++|+++|++ .....||+++
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~ 407 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV 407 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEE
Confidence 34569999999999999999 57999999999999999999999999999876688999999994 4578899999
Q ss_pred eec
Q psy12625 241 VLT 243 (612)
Q Consensus 241 ~L~ 243 (612)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 102
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.75 E-value=1.8e-19 Score=177.75 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=98.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCC--CCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHH
Q psy12625 51 GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK--TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESL 128 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~--~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 128 (612)
+-+++|++++|+||||||||||+++|+|...+.. +....|.+++++.+... ++.+++++|+..+.+. |+.||+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~----~~~i~~~~~~~~~~~~-~~~~~~ 94 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR----PERIREIAQNRGLDPD-EVLKHI 94 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC----HHHHHHHHHHTTSCHH-HHHHTE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC----HHHHHHHHHHcCCCHH-HHhhcE
Confidence 4799999999999999999999999999544311 11134577777654211 1224444554444332 444443
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChh-hhhHHHHHHHHhh-------CCCEEEEeCCCCCCC
Q psy12625 129 TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG-QKKRLSIALELLS-------NPSIIFLDEPTTGLD 200 (612)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG-erqRv~ia~aL~~-------~p~illlDEPtsgLD 200 (612)
.+. ...+++ +++++..+++++. +|+++++||||+++|
T Consensus 95 ~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVA-----------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEE-----------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEE-----------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 221 011222 2223444444444 899999999999999
Q ss_pred HH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCc---hHHHhcccceeeecCCe
Q psy12625 201 YL-------N-----ATNLVKLLRDMAH-QGTMIICTLHQPS---ASLLNMADYLYVLTEGY 246 (612)
Q Consensus 201 ~~-------~-----~~~i~~~l~~l~~-~g~tvi~~~H~~~---~~i~~~~D~v~~L~~G~ 246 (612)
+. . ..++++.|+++++ .|.|||+++|+.. ..+...+|+++.|++|+
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 84 2 2378888888876 5999999999533 13678899999998753
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.74 E-value=3.3e-20 Score=209.62 Aligned_cols=196 Identities=16% Similarity=0.210 Sum_probs=122.1
Q ss_pred eEEEEeEEEEEEeeccccccccccccccce----------EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCce
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDI----------SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS 89 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~ 89 (612)
.++++||+..|.. ..+++|+.+ +++++. ++|+|||||||||||++|+|+..| ..+
T Consensus 10 ~i~~~~l~~~~~~--------~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P----~~s 74 (608)
T 3szr_A 10 SVAENNLCSQYEE--------KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALP----RGS 74 (608)
T ss_dssp ----------CHH--------HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------
T ss_pred hhhhhhhhHHHHH--------HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCC----CCC
Confidence 5788999987721 223444443 245544 999999999999999999999765 258
Q ss_pred eEEEECCEecc--c---hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc
Q psy12625 90 GYIEINETRLQ--D---HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164 (612)
Q Consensus 90 G~I~~~g~~~~--~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 164 (612)
|.|+++|.++. . ...+++.++|++|++.+++.+||+|++.++........
T Consensus 75 G~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~------------------------- 129 (608)
T 3szr_A 75 GIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG------------------------- 129 (608)
T ss_dssp --CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------------------
T ss_pred CeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------------------
Confidence 99999998852 1 13467889999999999999999999987543211000
Q ss_pred ccCCCChhhhhHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCCch---HHH
Q psy12625 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEP------TTGLDYLNATNLVKLLRDMAH--QGTMIICTLHQPSA---SLL 233 (612)
Q Consensus 165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEP------tsgLD~~~~~~i~~~l~~l~~--~g~tvi~~~H~~~~---~i~ 233 (612)
.+..++++.++.+...+|+++++||| |+|||+..+.++.++++++.+ .+.++++++|+.+. .+.
T Consensus 130 -----~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l 204 (608)
T 3szr_A 130 -----MGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEAL 204 (608)
T ss_dssp -----SCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHH
T ss_pred -----cccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHH
Confidence 01112233333344568999999999 999999999999999999754 46788899998651 112
Q ss_pred hcc--------cceeeecCCeEEEecCccChhhHH
Q psy12625 234 NMA--------DYLYVLTEGYCTYQGTVPGLVPYL 260 (612)
Q Consensus 234 ~~~--------D~v~~L~~G~iv~~G~~~~~~~~f 260 (612)
+++ ..|.++.++..+..|+.+++...+
T Consensus 205 ~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 205 SMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp HHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred HHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 222 346788888888888766555443
No 104
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.73 E-value=1.1e-19 Score=188.20 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=109.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hhh--ccceEEEccCCCCCCCCCHHH
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RML--RKESCYIMQDNLLQELLTVEE 126 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~--~~~i~yv~Q~~~l~~~lTv~e 126 (612)
+|++++|+||||||||||++.|+|+++| .+|+|.++|.++... ..+ +..++|++|++.+.|..|++|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-----~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-----LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-----TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-----cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH
Confidence 7999999999999999999999999886 479999999886321 122 357999999999999899999
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy12625 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206 (612)
Q Consensus 127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~ 206 (612)
++.++..-. .. ..+++..|+.+..+..+ +..++||++|||+++.+|+.++| .||+.+..+
T Consensus 176 ~v~~~~~~~----~d--------~~llDt~G~~~~~~~~~---~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~ 235 (304)
T 1rj9_A 176 AVQAMKARG----YD--------LLFVDTAGRLHTKHNLM---EELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQN 235 (304)
T ss_dssp HHHHHHHHT----CS--------EEEECCCCCCTTCHHHH---HHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTH
T ss_pred HHHHHHhCC----CC--------EEEecCCCCCCchHHHH---HHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHH
Confidence 987653211 00 01233445544333333 44458999999999999994444 455555556
Q ss_pred HHHHHHHHHh-CCCEEEEEecCCc
Q psy12625 207 LVKLLRDMAH-QGTMIICTLHQPS 229 (612)
Q Consensus 207 i~~~l~~l~~-~g~tvi~~~H~~~ 229 (612)
+++.++++.+ .|.|+|++||+..
T Consensus 236 ~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 236 GLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHcCCcEEEEECCcc
Confidence 7777777765 4899999999854
No 105
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.73 E-value=6.7e-19 Score=202.47 Aligned_cols=148 Identities=20% Similarity=0.188 Sum_probs=108.1
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC-CCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR-PKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~-p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~ 119 (612)
+++.+++|+|++ |++++|+||||||||||||+|+|+.. + ..|.+. + ..+..+++++| ++
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-----~~G~~v----p-----a~~~~i~~v~~---i~ 623 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-----QVGSFV----P-----AEEAHLPLFDG---IY 623 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-----TTTCCB----S-----SSEEEECCCSE---EE
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-----ccCcee----e-----hhccceeeHHH---hh
Confidence 346799999998 99999999999999999999999753 2 234321 1 11345777776 55
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH--hhCCCEEEEeCC--
Q psy12625 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL--LSNPSIIFLDEP-- 195 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~p~illlDEP-- 195 (612)
+.+++.|++. .++|+|+++++.+++++ +++|+++|||||
T Consensus 624 ~~~~~~d~l~-------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 624 TRIGASDDLA-------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp EECCC-------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred ccCCHHHHHH-------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 5566666542 13689999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 196 -TTGLDYLNA-TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 196 -tsgLD~~~~-~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
|++||..+. ..+++.|++ .|.++|++||+.. ..+++ .-.+.++++.....
T Consensus 667 GTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAAREE 718 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEECC
T ss_pred CCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEEEc
Confidence 999999875 578887766 5889999999953 45555 23344555555443
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.71 E-value=1.3e-19 Score=174.79 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=107.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK 135 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~ 135 (612)
|++++|+||||||||||+++|+|+++ .+| |.++|.+..+...+++.+||++|+. .... +++ +++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~ 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVG 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccc
Confidence 78999999999999999999999875 357 8888877544345678899999975 1111 111 0111
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHH
Q psy12625 136 LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL-SIAL---ELLSNPSIIFLDE--PTTGLDYLNATNLVK 209 (612)
Q Consensus 136 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv-~ia~---aL~~~p~illlDE--PtsgLD~~~~~~i~~ 209 (612)
.. .++ ..-....+++...+|+|||+++ ++++ |++.+|+++++|| |+..+|......+.+
T Consensus 66 ~~--~~~-------------~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~ 130 (189)
T 2i3b_A 66 LE--PPP-------------GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ 130 (189)
T ss_dssp CC--CCS-------------SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH
T ss_pred cc--CCc-------------cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH
Confidence 00 000 0001133445567999999998 4454 5899999999999 899999875554444
Q ss_pred HHHHHHhCCCEEEE----EecCCchHHHhcccceeeecCCeEEEec
Q psy12625 210 LLRDMAHQGTMIIC----TLHQPSASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 210 ~l~~l~~~g~tvi~----~~H~~~~~i~~~~D~v~~L~~G~iv~~G 251 (612)
++ ++..++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 131 ~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 131 TL----STPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred HH----hCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 44 44444443 238854 3578999999999987754
No 107
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.70 E-value=3.2e-19 Score=173.49 Aligned_cols=185 Identities=15% Similarity=0.075 Sum_probs=100.8
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe-
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR- 98 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~- 98 (612)
.|+++|+++.| + ..++++ +.+++|+.++|+|+||||||||+|.|+|........+..|.+...+.-
T Consensus 3 ~l~~~~~~~~~----------~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~ 69 (210)
T 1pui_A 3 NLNYQQTHFVM----------S-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE 69 (210)
T ss_dssp --------CEE----------E-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE
T ss_pred chhhhhhhhee----------e-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE
Confidence 47889999887 2 357888 789999999999999999999999999987100001234544331110
Q ss_pred ccchHhhccceEEEccCCCCCCCCC---HHHHHHHHHHh-cc--------CCCCCHHHHHHHHHHHHHHcCCccc-cCcc
Q psy12625 99 LQDHRMLRKESCYIMQDNLLQELLT---VEESLTVAAHL-KL--------GNQYSRKAKESKVDSIADSLSISTC-KNTL 165 (612)
Q Consensus 99 ~~~~~~~~~~i~yv~Q~~~l~~~lT---v~e~l~~~~~l-~~--------~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ 165 (612)
+.+...+....|+..++ .+.-. .+..+...... +. .........++.+.++++..++... ..++
T Consensus 70 ~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK 146 (210)
T 1pui_A 70 VADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 146 (210)
T ss_dssp EETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec
Confidence 00000000000110000 00000 01111111100 00 0000011123345566777787654 3677
Q ss_pred cCCCChhhhhH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy12625 166 TKHLSGGQKKR-LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220 (612)
Q Consensus 166 ~~~LSgGerqR-v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 220 (612)
+..+|+||||| +..+++++.+|+++++|||||++|..+..++.+.|.++.++|.+
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 88899999999 89999999999999999999999999999999999998766543
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.69 E-value=3.1e-18 Score=198.06 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=111.7
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~ 120 (612)
+++.+++|+|++ ++|++++|+||||||||||||+|+|+..+. ..| ..+.. .+..++++.| +++
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~----q~G------~~vpa---~~~~i~~~~~---i~~ 655 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA----YIG------SYVPA---QKVEIGPIDR---IFT 655 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH----TTT------CCBSS---SEEEECCCCE---EEE
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH----hcC------cccch---hcccceeHHH---HHh
Confidence 346799999999 999999999999999999999999974310 112 11111 1234555554 455
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy12625 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD 200 (612)
.+++.|++... .+.+|+|++ +++.+...+++|+++|||||++|+|
T Consensus 656 ~~~~~d~l~~~----------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 656 RVGAADDLASG----------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp EEC---------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSS
T ss_pred hCCHHHHHHhh----------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCC
Confidence 55665554221 123566665 4555556799999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625 201 YLNATNL-VKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253 (612)
Q Consensus 201 ~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 253 (612)
+.....+ .++++.+++ .|.++|++||++. +..++|++..+.+|++.+....
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEET
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEcC
Confidence 9887776 788888887 5999999999974 4578999988999988776443
No 109
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.69 E-value=4e-17 Score=166.87 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=108.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHH
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVA 131 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 131 (612)
-+++|++++|+||||||||||++.+++... .|++ +.|.+... ...+.|+..++... .+.+.+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-------~g~~-~~g~~~~~----~~~v~~~~~e~~~~---~~~~r~--- 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-------GGPD-LLEVGELP----TGPVIYLPAEDPPT---AIHHRL--- 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-------TCCC-TTCCCCCC----CCCEEEEESSSCHH---HHHHHH---
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-------cCCC-cCCCccCC----CccEEEEECCCCHH---HHHHHH---
Confidence 488999999999999999999999998654 2444 23443211 34577877655320 111111
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HH
Q psy12625 132 AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT--GLDYLNA---TN 206 (612)
Q Consensus 132 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts--gLD~~~~---~~ 206 (612)
..+. .... ....+++++.+++.+..++.+..||+||+|++ ++++.+|+++++||||+ ++|.... .+
T Consensus 88 ~~~g--~~~~----~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 88 HALG--AHLS----AEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp HHHH--TTSC----HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred HHHH--hhcC----hhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1111 1122 13356778889998888889999999998865 68889999999999999 9998544 88
Q ss_pred HHHHHHHHHh-CCCEEEEEecCCc
Q psy12625 207 LVKLLRDMAH-QGTMIICTLHQPS 229 (612)
Q Consensus 207 i~~~l~~l~~-~g~tvi~~~H~~~ 229 (612)
+++.|+++++ .|+|||+++|+..
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHcCCEEEEEecCCC
Confidence 8999999975 6999999999864
No 110
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.69 E-value=7.2e-19 Score=185.73 Aligned_cols=167 Identities=18% Similarity=0.136 Sum_probs=104.8
Q ss_pred cccce-EEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeE-EEECCEeccchHhhccceEEEccCCCCCC
Q psy12625 45 ILKDI-SGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGY-IEINETRLQDHRMLRKESCYIMQDNLLQE 120 (612)
Q Consensus 45 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~-I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~ 120 (612)
.|+++ ++.+++|++++|+||||||||||++.+++.. +|..+ ...|+ |++++++.. .++++++++|...+++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~G-g~~G~vi~i~~e~~~----~~~~i~~i~q~~~~~~ 193 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG-GLNGSVIWIDTENTF----RPERIREIAQNRGLDP 193 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-SCSCEEEEEESSSCC----CHHHHHHHHHTTTCCH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcC-CCCCeEEEEeCCCCC----CHHHHHHHHHHcCCCH
Confidence 45665 5899999999999999999999999999987 33110 11367 888886531 1345667777665544
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh-------hCCCEEEEe
Q psy12625 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL-------SNPSIIFLD 193 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~-------~~p~illlD 193 (612)
. ++.||+.+.. ... |.+|+|++.++++++ .+|+++++|
T Consensus 194 ~-~v~~ni~~~~------~~~----------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD 238 (349)
T 1pzn_A 194 D-EVLKHIYVAR------AFN----------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVD 238 (349)
T ss_dssp H-HHGGGEEEEE------CCS----------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE
T ss_pred H-HHhhCEEEEe------cCC----------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 3 4444432210 011 334555555555555 689999999
Q ss_pred CCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625 194 EPTTGLDYLN------------ATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 194 EPtsgLD~~~------------~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
|||+++|+.. ..++++.|+++++ .|+|||+++|... ..-..++.......|+++.++.
T Consensus 239 s~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 239 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred CchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 9999999852 4667777788776 5899999999865 3333445556666677665554
No 111
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.68 E-value=3.3e-18 Score=168.56 Aligned_cols=169 Identities=10% Similarity=0.008 Sum_probs=112.8
Q ss_pred cccccceEE-EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhc---cceEEEccCCCC
Q psy12625 43 KDILKDISG-VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLR---KESCYIMQDNLL 118 (612)
Q Consensus 43 ~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~---~~i~yv~Q~~~l 118 (612)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.+.+.+.+.. ....+ ..+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-----~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR-----DGDPCIYVTTEES-RDSIIRQAKQFNWDFEEYIE 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH-----HTCCEEEEESSSC-HHHHHHHHHHTTCCCGGGBT
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-----CCCeEEEEEcccC-HHHHHHHHHHhcchHHHHhh
Confidence 457888885 8999999999999999999999999987653 3466666544321 11111 122332222100
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCC--EEEEeCCC
Q psy12625 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPS--IIFLDEPT 196 (612)
Q Consensus 119 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~--illlDEPt 196 (612)
. .+.+ .. ... ..++ ... .....|.+|.++...+.....+|+ ++++||||
T Consensus 83 ~-~~~~---------~~---~~~------------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 83 K-KLII---------ID---ALM------------KEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp T-TEEE---------EE---CCC-----------------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred C-CEEE---------Ee---ccc------------cccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0 0000 00 000 0001 111 123459999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------hHHHhcccceeeecCCe
Q psy12625 197 TGL--DYLNATNLVKLLRDMAH-QGTMIICTLHQPS-------ASLLNMADYLYVLTEGY 246 (612)
Q Consensus 197 sgL--D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~-------~~i~~~~D~v~~L~~G~ 246 (612)
+++ |+....++++.|+++++ .|.|||+++|+.. ..+.+.||++++|++..
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 888 99999999999999976 6999999999972 24788999999998653
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.68 E-value=1.8e-17 Score=175.10 Aligned_cols=128 Identities=24% Similarity=0.366 Sum_probs=92.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHH
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVA 131 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 131 (612)
...+|++++|+|||||||||||++|+|+++|. ..|.|...+.++ + ...+...+++.|........+..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~----~~~~i~t~ed~~-e-~~~~~~~~~v~q~~~~~~~~~~~~----- 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT----KYHHILTIEDPI-E-FVHESKKCLVNQREVHRDTLGFSE----- 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH----CCCEEEEEESSC-C-SCCCCSSSEEEEEEBTTTBSCHHH-----
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC----CCcEEEEccCcH-H-hhhhccccceeeeeeccccCCHHH-----
Confidence 67899999999999999999999999998751 246665443332 1 112334556666543222222111
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy12625 132 AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211 (612)
Q Consensus 132 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l 211 (612)
+||++|..+|+++++|||| |..+ ++.+
T Consensus 188 ----------------------------------------------~La~aL~~~PdvillDEp~---d~e~----~~~~ 214 (356)
T 3jvv_A 188 ----------------------------------------------ALRSALREDPDIILVGEMR---DLET----IRLA 214 (356)
T ss_dssp ----------------------------------------------HHHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred ----------------------------------------------HHHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence 9999999999999999999 6555 4445
Q ss_pred HHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 212 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
.++++.|.+|++|+|+.+. .+.+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTSA--AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSSH--HHHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccChH--HHHHHHHhhhcCc
Confidence 5556789999999999863 4889999999665
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=4.1e-18 Score=183.46 Aligned_cols=163 Identities=13% Similarity=0.173 Sum_probs=97.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.|+++||++.| +++.+++|+|++| +|+||||||||||+|+|+|...+..+ .|.+.+++.+
T Consensus 11 ~l~~~~l~~~y----------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQV----------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCT----------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------
T ss_pred cEEEEecceeE----------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-
Confidence 58888888765 5678999999998 99999999999999999998764211 2222222211
Q ss_pred cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179 (612)
Q Consensus 100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 179 (612)
....+.+++++|++.+++.+||.||+.+..... .......+.+.++ ..++.+++||++|
T Consensus 71 ---t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~------------~~~~~~l~qr~~I 129 (418)
T 2qag_C 71 ---TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID------------SKFEDYLNAESRV 129 (418)
T ss_dssp ---CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHH------------HHHHHHTTTSCC-
T ss_pred ---ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 112356899999998888899999987754321 0111111222221 1456788899999
Q ss_pred HHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625 180 ALELLSNPS---IIFLDEPT-TGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228 (612)
Q Consensus 180 a~aL~~~p~---illlDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 228 (612)
||+++.+|+ ++++|||| .|||+... +.++++.. +.+||+++|..
T Consensus 130 aRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 130 NRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred HHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 999999999 99999999 69998873 44555554 67777777764
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.64 E-value=1.1e-18 Score=167.43 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=100.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHH
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVA 131 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 131 (612)
.+++|++++|+||||||||||+++|+|. + ..|.|.++|.++......++.++|++|+.. +..||.|++.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~-----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~ 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--P-----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADV 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--S-----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--c-----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHH
Confidence 3679999999999999999999999997 2 368999998764221111344678887654 457889988765
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHHcCCcccc--CcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy12625 132 AHLKLGNQYSRKAKESKVDSIADSLSISTCK--NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209 (612)
Q Consensus 132 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~ 209 (612)
+......... ..++.+++..++.... +..+..+|+|++||+.++|++..+|+++ +|+.....+.+
T Consensus 76 ~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 76 AGRYAKEGYF-----VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHHHHTSCE-----EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HHHHhccCCe-----EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 4321100000 0011111122232222 4456679999999999999999999877 68888888888
Q ss_pred HHHHHHhCCCEEEEEec
Q psy12625 210 LLRDMAHQGTMIICTLH 226 (612)
Q Consensus 210 ~l~~l~~~g~tvi~~~H 226 (612)
.++.+...+..+|.+++
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77666443334444443
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.62 E-value=1.3e-19 Score=174.20 Aligned_cols=172 Identities=18% Similarity=0.103 Sum_probs=114.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK 135 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~ 135 (612)
|++++|+||||||||||+++|++. .+|.+.++|.++.. ....++++|.....+..|+++++.+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~--------~~g~~~i~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ--------LDNSAYIEGDIINH----MVVGGYRPPWESDELLALTWKNITDLTVNF 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH--------SSSEEEEEHHHHHT----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc--------cCCeEEEcccchhh----hhccccccCccchhHHHHHHHHHHHHHHHH
Confidence 789999999999999999999972 35889998865321 123567777665555568888877654321
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccccCcccCCC--ChhhhhHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy12625 136 LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL--SGGQKKRLSIAL------ELLSNPSIIFLDEPTTGLDYLNATNL 207 (612)
Q Consensus 136 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L--SgGerqRv~ia~------aL~~~p~illlDEPtsgLD~~~~~~i 207 (612)
..... ..+++.+. .....+...++ |+|++|++.++. +++.+|+...+|| +||+.....
T Consensus 70 ~~~~~---------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~- 135 (189)
T 2bdt_A 70 LLAQN---------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL- 135 (189)
T ss_dssp HHTTC---------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-
T ss_pred HhcCC---------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-
Confidence 10000 00111110 00001112234 899999998888 9999999888884 899988888
Q ss_pred HHHHHHHHhCCCEEEEEecC-CchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 208 VKLLRDMAHQGTMIICTLHQ-PSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 208 ~~~l~~l~~~g~tvi~~~H~-~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
.+.++.+.+.+.++|.++|+ ++ ++.+.||+|+ ++|+++..|+++-+
T Consensus 136 ~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 136 VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 88888886677899999998 65 5788999999 99999999988644
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.60 E-value=2.3e-17 Score=162.91 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=100.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCH----H
Q psy12625 50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTV----E 125 (612)
Q Consensus 50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv----~ 125 (612)
.-..++|++++|+||||||||||+|+|+|+.+|. ...|.|.+++++... ..++.++|++|++..|+.+++ .
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~---~~~g~v~~ttr~~~~--~e~~gi~y~fq~~~~f~~~~~~~~f~ 84 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY---DTQVSVSHTTRQPRP--GEVHGEHYFFVNHDEFKEMISRDAFL 84 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT---TEEECCCEECSCCCT--TCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC---ceEEEEEecCCCCCc--ccccCceEEECCHHHHHHHHhcCHHH
Confidence 3467999999999999999999999999998741 368999998876432 235678999998765554443 2
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625 126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205 (612)
Q Consensus 126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~ 205 (612)
|++.+.. .+.|-.+++ +.+++..++++||| ||+.++.
T Consensus 85 E~~~~~~-----------------------------------~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 85 EHAEVFG-----------------------------------NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEEEETT-----------------------------------EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHHHh-----------------------------------ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 2221110 011111111 23444557999999 9999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhhHHh
Q psy12625 206 NLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLS 261 (612)
Q Consensus 206 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 261 (612)
++.+.+. ++.+|++++|++. ++. .|+ +.+| .++++++...+.
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~-~l~---~Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKI-ELD---RRL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHH-HHH---HHH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHcc----CCEEEEEECCCHH-HHH---HHH--HHcC----CCCHHHHHHHHH
Confidence 9999876 5899999999975 333 353 6777 567776665553
No 117
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.59 E-value=2.1e-15 Score=143.13 Aligned_cols=82 Identities=18% Similarity=0.307 Sum_probs=69.4
Q ss_pred cCcccCCCChhhhhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc
Q psy12625 162 KNTLTKHLSGGQKKRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD 237 (612)
Q Consensus 162 ~~~~~~~LSgGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D 237 (612)
.++.+..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|++++++ .++|+++|+. .....||
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad 134 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANAD 134 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCS
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCC
Confidence 345677899999999999999975 46999999999999999999999999998754 5788888885 4578999
Q ss_pred ceeeec--CCe
Q psy12625 238 YLYVLT--EGY 246 (612)
Q Consensus 238 ~v~~L~--~G~ 246 (612)
+++.+. +|.
T Consensus 135 ~i~~v~~~~g~ 145 (173)
T 3kta_B 135 KIIGVSMRDGV 145 (173)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEecCCE
Confidence 998664 553
No 118
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.58 E-value=6.6e-19 Score=187.23 Aligned_cols=175 Identities=14% Similarity=0.007 Sum_probs=112.2
Q ss_pred cccceEEEEeC--CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCce----eEEEEC----CEecc-chHhhccceEEEc
Q psy12625 45 ILKDISGVFVS--KELSVILGPSGSGKTKLLDILAGYRRPKKTETNS----GYIEIN----ETRLQ-DHRMLRKESCYIM 113 (612)
Q Consensus 45 iL~~vs~~i~~--Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~----G~I~~~----g~~~~-~~~~~~~~i~yv~ 113 (612)
+.+.|++++++ |+.++|+||||||||||+|+|+|+++| .+ |++.++ |.++. ....+ +.+++++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~-----~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~ 230 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT-----TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGH 230 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC-----EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC-----CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHH
Confidence 56789999999 999999999999999999999999886 45 666553 22210 00111 2244444
Q ss_pred cCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh-hCCCEEEE
Q psy12625 114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL-SNPSIIFL 192 (612)
Q Consensus 114 Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~-~~p~illl 192 (612)
|+..++. .|+.||+.+ +..+..++.+..+|+|++||..+++++. .+|++++|
T Consensus 231 q~~~~~~-~t~~~nl~~--------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllL 283 (365)
T 1lw7_A 231 QRYIDYA-VRHSHKIAF--------------------------IDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTIL 283 (365)
T ss_dssp HHHHHHH-HHHCSSEEE--------------------------ESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHH-HhccCCEEE--------------------------EeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEE
Confidence 3321110 111111110 0011112223346778888888888875 59999999
Q ss_pred eC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625 193 DE---PT------TGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256 (612)
Q Consensus 193 DE---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 256 (612)
|| |+ .++|+..+..+.+.|+++.+ .|.+|++++|. + ...+++|++..+++ ++..++++++
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH--HhcccchhHh
Confidence 99 65 58999999999999999865 48899998875 3 45788898888864 4445555554
No 119
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.58 E-value=2.2e-15 Score=147.35 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=100.9
Q ss_pred ccccceE-EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625 44 DILKDIS-GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 44 ~iL~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l 122 (612)
+.|+++. +-+++|++++|+||||||||||++.|++ .+ ..+.++++..+ . .
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-----~~~v~~i~~~~------------------~----~ 57 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-----GKKVAYVDTEG------------------G----F 57 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-----CSEEEEEESSC------------------C----C
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-----CCcEEEEECCC------------------C----C
Confidence 4567766 4799999999999999999999999999 31 12333433321 0 0
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh--hhHHHHHHHHhhC-CCEEEEeCCCCCC
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ--KKRLSIALELLSN-PSIIFLDEPTTGL 199 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe--rqRv~ia~aL~~~-p~illlDEPtsgL 199 (612)
+..+-...... . .... +++++.+ .+...|+++ +++++.+++++.+ |+++++||||+++
T Consensus 58 ~~~~~~~~~~~--~--~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 58 SPERLVQMAET--R--GLNP-------EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp CHHHHHHHHHT--T--TCCH-------HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred CHHHHHHHHHh--c--CCCh-------HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 11110000000 0 1111 1122222 233455664 5688888899986 9999999999999
Q ss_pred CHH--------HHHHHHHHHHHHHh-CCCEEEEEecCCch------------HHHhcccceeeecCC
Q psy12625 200 DYL--------NATNLVKLLRDMAH-QGTMIICTLHQPSA------------SLLNMADYLYVLTEG 245 (612)
Q Consensus 200 D~~--------~~~~i~~~l~~l~~-~g~tvi~~~H~~~~------------~i~~~~D~v~~L~~G 245 (612)
|+. ...++++.|+++++ .|.|||+++|.... .+.+.||.+++|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 973 33556677888876 48999999998541 467889999999754
No 120
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.56 E-value=6.9e-16 Score=163.65 Aligned_cols=138 Identities=15% Similarity=0.061 Sum_probs=104.7
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEc-cCCCCCCCCCH
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM-QDNLLQELLTV 124 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~-Q~~~l~~~lTv 124 (612)
++++|+.+++|++++|+||||||||||+|+|+|+++| .+|.|.++|..-......++.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~-----~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------ 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF-----DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE------ 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT-----TSCEEEEESSSCCCCTTCSSEEEEECC-----------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC-----CceEEEECCccccCccccCCEEEEeecCcccc------
Confidence 4999999999999999999999999999999999986 57999999853111223567789998 54321
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy12625 125 EESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204 (612)
Q Consensus 125 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 204 (612)
+++++..+|-.|+.++..+|+.+++|||+.
T Consensus 234 -------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~------- 263 (361)
T 2gza_A 234 -------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG------- 263 (361)
T ss_dssp ------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------
T ss_pred -------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------
Confidence 013444678888888888999999999986
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625 205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246 (612)
Q Consensus 205 ~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 246 (612)
.++.+.++.+.....|++.++|..+ ....+||+..|.+|.
T Consensus 264 ~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777655568899999965 478899999998764
No 121
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.56 E-value=5.1e-18 Score=170.21 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=104.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---CCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHH
Q psy12625 55 SKELSVILGPSGSGKTKLLDILA---GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVA 131 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~---g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 131 (612)
++++++|+||||||||||+++|+ |+..+ ..|+|.++|.+.. ......+++++|+..+++..++.|++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~-----~~G~i~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~v~~~l~~~ 98 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL-----SSGHFLRENIKAS--TEVGEMAKQYIEKSLLVPDHVITRLMMSE 98 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE-----EHHHHHHHHHHTT--CHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe-----cHHHHHHHHHhcC--ChHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999 98774 5788877765421 12233455667887788888999998764
Q ss_pred HHhccC-----CCCCHHHHHHHHHHHHH--HcC------------CccccCcccCCCChhhhhHHHHHHHH-hhCCCEEE
Q psy12625 132 AHLKLG-----NQYSRKAKESKVDSIAD--SLS------------ISTCKNTLTKHLSGGQKKRLSIALEL-LSNPSIIF 191 (612)
Q Consensus 132 ~~l~~~-----~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~~~~LSgGerqRv~ia~aL-~~~p~ill 191 (612)
...... ...+... ..++.+.+ .++ ++...++++..||| |+ +++ +.+|++++
T Consensus 99 l~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~ll 169 (246)
T 2bbw_A 99 LENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHG 169 (246)
T ss_dssp HHTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTT
T ss_pred HHhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccc
Confidence 321000 0111111 12223221 233 33445777889999 66 777 99999999
Q ss_pred Ee----CCCCCCCHHHHHHHHHHHHHHHhC
Q psy12625 192 LD----EPTTGLDYLNATNLVKLLRDMAHQ 217 (612)
Q Consensus 192 lD----EPtsgLD~~~~~~i~~~l~~l~~~ 217 (612)
+| |||+|||..+...+.+.++++.++
T Consensus 170 lD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 170 IDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp BCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 99 999999999999999999988765
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.54 E-value=2e-15 Score=160.66 Aligned_cols=131 Identities=21% Similarity=0.347 Sum_probs=99.3
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCc-eeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~-~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l 122 (612)
.+|++++ +++|++++|+||||||||||+++|+|+++| . +|+|.+.|.++. ...++.+++|+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~-----~~~g~I~~~e~~~e--~~~~~~~~~v~Q~~------ 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ-----TKSYHIITIEDPIE--YVFKHKKSIVNQRE------ 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHH-----HSCCEEEEEESSCC--SCCCCSSSEEEEEE------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCc-----CCCcEEEEecccHh--hhhccCceEEEeee------
Confidence 3577766 789999999999999999999999999874 3 699977765532 12456788888841
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 202 (612)
+|++ +..+ +.+|+++|..+|+++++|||+ |+.
T Consensus 191 ---------------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ---------------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ---------------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ---------------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1221 1233 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243 (612)
Q Consensus 203 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 243 (612)
+... .++. +..|.+|+.|+|+.+ +.+.+||++.|.
T Consensus 223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 6443 3443 356899999999964 578899998774
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=2.6e-16 Score=168.83 Aligned_cols=172 Identities=15% Similarity=0.151 Sum_probs=112.5
Q ss_pred cccccccceEEEEeCCeE--EEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCC
Q psy12625 41 KSKDILKDISGVFVSKEL--SVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLL 118 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l 118 (612)
++.+ |+++|+++++|++ ++|+||||||||||+|+|+|+.- .|.-.- .. .....++.++|++|++.+
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-------~g~~~~-~~---~~~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-------EGEPAT-HT---QPGVQLQSNTYDLQESNV 93 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------------C---CSSCEEEEEEEEEEC--C
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-------cCCcCC-CC---CccceEeeEEEEeecCcc
Confidence 4556 9999999999999 99999999999999999999842 121110 00 111234579999999988
Q ss_pred CCCCCHHHHHHHHHHhccCCCCC--HHHHHHHHHHHHHHc-CCcc----ccCccc-----------CCCChhhhhHHHHH
Q psy12625 119 QELLTVEESLTVAAHLKLGNQYS--RKAKESKVDSIADSL-SIST----CKNTLT-----------KHLSGGQKKRLSIA 180 (612)
Q Consensus 119 ~~~lTv~e~l~~~~~l~~~~~~~--~~~~~~~v~~~l~~l-gL~~----~~~~~~-----------~~LSgGerqRv~ia 180 (612)
++.+||.||+.++.......... .+..++..++.++.. ++.. ..|.++ .+|+-.+ +.|+
T Consensus 94 ~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieil 170 (427)
T 2qag_B 94 RLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTM 170 (427)
T ss_dssp EEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHH
T ss_pred ccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHH
Confidence 88899999876543211000000 011234455566655 5432 223332 1455555 7999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q psy12625 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD-MAHQGTMIICTLHQ 227 (612)
Q Consensus 181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~-l~~~g~tvi~~~H~ 227 (612)
++|..+++++++|||+..|.+.....+.+.+++ +..+|..|+.++.+
T Consensus 171 k~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 171 KKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999999999986 77789998888765
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.53 E-value=1.7e-18 Score=180.74 Aligned_cols=161 Identities=15% Similarity=0.142 Sum_probs=106.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCCCCCC---CCCceeEEEECCEeccch-----------------HhhccceEEE---
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYRRPKK---TETNSGYIEINETRLQDH-----------------RMLRKESCYI--- 112 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~---~~~~~G~I~~~g~~~~~~-----------------~~~~~~i~yv--- 112 (612)
=++++|+|+||||||||||.|.|..+..+ -.+..|+|.++|.++... ..+++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 36899999999999999999999862100 013679999999876432 1234557776
Q ss_pred ccCCCCCCCCCHHHHHHHHH--Hh-ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCE
Q psy12625 113 MQDNLLQELLTVEESLTVAA--HL-KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSI 189 (612)
Q Consensus 113 ~Q~~~l~~~lTv~e~l~~~~--~l-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~i 189 (612)
+|++.+++..+|.||..++. .+ +.-...+......+++.++..+++.+..++.. ++|+|||||+..+++++.+|++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTT
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECccc
Confidence 57666666677777664321 00 00000000001111223344455555544444 7999999999999999999998
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 190 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
+ ||| .++.+.+++++ .+.+|++++|++.
T Consensus 163 ~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 163 A--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp C--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred C--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 8 999 77888888875 5889999999865
No 125
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.52 E-value=6.3e-15 Score=155.08 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=100.3
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC-CCCCCCceeEEEEC-CEeccchHhhccceEEEccCCCCCCCC
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR-PKKTETNSGYIEIN-ETRLQDHRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~-p~~~~~~~G~I~~~-g~~~~~~~~~~~~i~yv~Q~~~l~~~l 122 (612)
-+++++.. .+|++++|+||||||||||+|+|+|..+ | .+|+|.++ |+... ...++.+++++|+..++++.
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~-----~~G~I~~~~G~g~~--tt~~~~i~~v~q~~~l~dtp 276 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI-----LTNDVSNVSGLGQH--TTTAARLYHFPHGGDVIDSP 276 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC-----CCC---------------CCCEEEECTTSCEEEECH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc-----ccCCccccCCCCcc--ceEEEEEEEECCCCEecCcc
Confidence 45666654 4899999999999999999999999987 6 57999887 65521 23456799999999999888
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 202 (612)
||+|+. + ...++++..+.+.++++.+|+.+..|..+.++| ||+||++||+++ +++.
T Consensus 277 gv~e~~-----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl---------------i~~~ 332 (358)
T 2rcn_A 277 GVREFG-----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA---------------IAET 332 (358)
T ss_dssp HHHTCC-----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS---------------SCHH
T ss_pred cHHHhh-----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC---------------CCHH
Confidence 988841 1 134455566778899999999999999999999 999999999875 3444
Q ss_pred HHHHHHHHHHHHHh
Q psy12625 203 NATNLVKLLRDMAH 216 (612)
Q Consensus 203 ~~~~i~~~l~~l~~ 216 (612)
-.....++++++++
T Consensus 333 R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 333 RFENYHRILESMAQ 346 (358)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 44455566666543
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.50 E-value=1e-14 Score=144.74 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=87.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHC--CCCCCCCCCceeEEEECCEeccchH---hhccceEEEccCCCCCCCCCHH
Q psy12625 51 GVFVSKELSVILGPSGSGKTKLLDILAG--YRRPKKTETNSGYIEINETRLQDHR---MLRKESCYIMQDNLLQELLTVE 125 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g--~~~p~~~~~~~G~I~~~g~~~~~~~---~~~~~i~yv~Q~~~l~~~lTv~ 125 (612)
+-+++|++++|+||||||||||++.|++ ..+|..+....|.+++++.+..... ...+.+++.+|+ +.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~ 90 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VL 90 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hh
Confidence 5699999999999999999999999999 4443111113577788776521111 112223332221 11
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH-HHHHHHHh--hCCCEEEEeCCCCCCCHH
Q psy12625 126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR-LSIALELL--SNPSIIFLDEPTTGLDYL 202 (612)
Q Consensus 126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR-v~ia~aL~--~~p~illlDEPtsgLD~~ 202 (612)
++ +.+ ....+..+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 91 ~~----------------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 91 DN----------------------------VAY-------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp HT----------------------------EEE-------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred hC----------------------------eEE-------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 11 100 01123332221 22222333 589999999999999985
Q ss_pred -------H-----HHHHHHHHHHHHh-CCCEEEEEecCCchH------------------HHhcccceeeecCC
Q psy12625 203 -------N-----ATNLVKLLRDMAH-QGTMIICTLHQPSAS------------------LLNMADYLYVLTEG 245 (612)
Q Consensus 203 -------~-----~~~i~~~l~~l~~-~g~tvi~~~H~~~~~------------------i~~~~D~v~~L~~G 245 (612)
. ..++++.|+++++ .|.|||+++|..... +.+.||.+++|++|
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 3456677777765 599999999965321 12278999998865
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.47 E-value=5e-16 Score=147.28 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=87.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc-----hHhhc-cceE----EEccCCCCCCCCCHHH
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD-----HRMLR-KESC----YIMQDNLLQELLTVEE 126 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~-----~~~~~-~~i~----yv~Q~~~l~~~lTv~e 126 (612)
++++|+|+||||||||+++|+|+++|. ....|.|.++|.++.+ ...+| +.++ +++|+..++- ++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~--g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~ 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER--GLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT--TCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc--CCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec
Confidence 589999999999999999999998752 1137999999987432 23455 3566 8888876551 00
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHH-cCCccccCcccC-CCChhhhhHHHHHHHHhhCCCEE-------EEeCCCC
Q psy12625 127 SLTVAAHLKLGNQYSRKAKESKVDSIADS-LSISTCKNTLTK-HLSGGQKKRLSIALELLSNPSII-------FLDEPTT 197 (612)
Q Consensus 127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~~~-~LSgGerqRv~ia~aL~~~p~il-------llDEPts 197 (612)
+ . .+....++++++. +. -.|+.++ +||||||||++|||+++.+|++. .=|.|..
T Consensus 77 ----------~---~-~~~~a~l~~~i~~~l~---g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~ 139 (171)
T 2f1r_A 77 ----------V---S-EEEGNDLDWIYERYLS---DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVD 139 (171)
T ss_dssp ----------C---C-HHHHTCHHHHHHHHTT---TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCS
T ss_pred ----------C---C-hhhhhCHHHHHHhhCC---CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcc
Confidence 0 0 1111134556655 42 1233332 59999999999999999999873 2245432
Q ss_pred C---CCHHHHHHHHHHHHHHHhCCC
Q psy12625 198 G---LDYLNATNLVKLLRDMAHQGT 219 (612)
Q Consensus 198 g---LD~~~~~~i~~~l~~l~~~g~ 219 (612)
+ +|......+.+.+.+...+|.
T Consensus 140 ~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 140 GHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cCcccCcccHHHHHHHHHHHHhccC
Confidence 2 344556777788766666553
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.47 E-value=1e-15 Score=143.18 Aligned_cols=81 Identities=16% Similarity=0.022 Sum_probs=67.7
Q ss_pred ccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC
Q psy12625 40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119 (612)
Q Consensus 40 ~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~ 119 (612)
++++.+++++|+++++|++++|+||||||||||+|+|+|++ | .+|+|.++|.++.+....+ .+++|+..++
T Consensus 17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-----~~G~V~~~g~~i~~~~~~~---~~~~q~~~l~ 87 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G-----HQGNVKSPTYTLVEEYNIA---GKMIYHFDLY 87 (158)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T-----CCSCCCCCTTTCEEEEEET---TEEEEEEECT
T ss_pred HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C-----CCCeEEECCEeeeeeccCC---Ccceeccccc
Confidence 35678999999999999999999999999999999999988 6 4799999998764221112 2899998888
Q ss_pred CCCCHHHHHHH
Q psy12625 120 ELLTVEESLTV 130 (612)
Q Consensus 120 ~~lTv~e~l~~ 130 (612)
.+||.|++.+
T Consensus 88 -~ltv~e~l~~ 97 (158)
T 1htw_A 88 -RLADPEELEF 97 (158)
T ss_dssp -TCSCTTHHHH
T ss_pred -cCCcHHHHHH
Confidence 8999999854
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.47 E-value=1.8e-15 Score=164.32 Aligned_cols=182 Identities=15% Similarity=0.105 Sum_probs=119.7
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hh--hccceEEEccCCC
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RM--LRKESCYIMQDNL 117 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~--~~~~i~yv~Q~~~ 117 (612)
-+++|+++++|++++|+||||||||||+++|+|++++ .+|+|.++|.+.... .. .++.++|++|+..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~-----~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~ 357 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-----QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG 357 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH-----TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh-----cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC
Confidence 4689999999999999999999999999999999875 469999987764321 12 2567999999988
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh-hCC-CEEEEeCC
Q psy12625 118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL-SNP-SIIFLDEP 195 (612)
Q Consensus 118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~-~~p-~illlDEP 195 (612)
+++.+||++++.++..-.. . . -+++..|+.+.......+| +|++.+++++. ..| .++|..+|
T Consensus 358 ~~p~~tV~e~l~~a~~~~~--D--------v--VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDa 421 (503)
T 2yhs_A 358 ADSASVIFDAIQAAKARNI--D--------V--LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDA 421 (503)
T ss_dssp CCHHHHHHHHHHHHHHTTC--S--------E--EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEG
T ss_pred cCHHHHHHHHHHHHHhcCC--C--------E--EEEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecC
Confidence 8888999999988643110 0 0 0122223222211112223 47888888764 456 45666668
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec--CCeEEEecCccCh
Q psy12625 196 TTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT--EGYCTYQGTVPGL 256 (612)
Q Consensus 196 tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~~~ 256 (612)
|+|.|.. +.++.+.+ -+.|.++.||-.. .....+.+-++. +..+.|.|.-+.+
T Consensus 422 ttGq~al------~~ak~f~~~~~itgvIlTKLD~--takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 422 STGQNAV------SQAKLFHEAVGLTGITLTKLDG--TAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp GGTHHHH------HHHHHHHHHTCCSEEEEECGGG--CSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred cccHHHH------HHHHHHHhhcCCCEEEEEcCCC--cccccHHHHHHHHHCCCEEEEecCCCh
Confidence 8886554 33455544 4788888888422 234444444443 3467777766554
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.46 E-value=1e-16 Score=168.52 Aligned_cols=166 Identities=13% Similarity=0.125 Sum_probs=112.9
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchH------hhccceEEEcc
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR------MLRKESCYIMQ 114 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~------~~~~~i~yv~Q 114 (612)
+.+.+|+++|+++++|++++|+||||||||||+|+|+|+.+| .+|+|.+.|.++.... ..++.+++++|
T Consensus 40 ~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-----~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q 114 (337)
T 2qm8_A 40 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA-----AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAI 114 (337)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH-----TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGG
T ss_pred ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh-----CCCEEEEEEEcCcccccccchHHHhhhheeecc
Confidence 456799999999999999999999999999999999999875 4799999998763321 24567999999
Q ss_pred CCCCCCCC------------CHHHHHHHHH-----------------------Hhc-----cCCCCCHHH--HHHHHHHH
Q psy12625 115 DNLLQELL------------TVEESLTVAA-----------------------HLK-----LGNQYSRKA--KESKVDSI 152 (612)
Q Consensus 115 ~~~l~~~l------------Tv~e~l~~~~-----------------------~l~-----~~~~~~~~~--~~~~v~~~ 152 (612)
++.+++.. +++|.+.... ... ......... .++.+.+.
T Consensus 115 ~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~ 194 (337)
T 2qm8_A 115 DRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFEL 194 (337)
T ss_dssp CTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHH
T ss_pred CcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhcc
Confidence 98887542 2333321110 000 000000000 00011122
Q ss_pred HHHcCCccccCc-ccCCCChhhhhHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy12625 153 ADSLSISTCKNT-LTKHLSGGQKKRLSIALELLS------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216 (612)
Q Consensus 153 l~~lgL~~~~~~-~~~~LSgGerqRv~ia~aL~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 216 (612)
...+.+ +..|. ....+|+|++|++..+++++. +|++++ ||++|.....++.+.|.++.+
T Consensus 195 ~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 195 ADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred ccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 222333 23342 234689999999999999987 688887 999999999999999988754
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.45 E-value=1.1e-14 Score=151.94 Aligned_cols=144 Identities=15% Similarity=0.074 Sum_probs=103.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hhhc--cceEEEccCCCCCCCCCHH
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RMLR--KESCYIMQDNLLQELLTVE 125 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~~--~~i~yv~Q~~~l~~~lTv~ 125 (612)
++|++++|+||||||||||++.|+|+++| .+|+|.++|.++... ..++ ..+.+++|+..+.|.+||+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~-----~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN-----HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH-----TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-----cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 68999999999999999999999999875 579999999886432 1122 3466999999999999999
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625 126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205 (612)
Q Consensus 126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~ 205 (612)
||+.++..... .. .+++..|+.+..+....+||+ +++++..++++++||.+|. .
T Consensus 202 e~l~~~~~~~~--d~----------vliDtaG~~~~~~~l~~eL~~-------i~ral~~de~llvLDa~t~-------~ 255 (328)
T 3e70_C 202 DAIQHAKARGI--DV----------VLIDTAGRSETNRNLMDEMKK-------IARVTKPNLVIFVGDALAG-------N 255 (328)
T ss_dssp HHHHHHHHHTC--SE----------EEEEECCSCCTTTCHHHHHHH-------HHHHHCCSEEEEEEEGGGT-------T
T ss_pred HHHHHHHhccc--hh----------hHHhhccchhHHHHHHHHHHH-------HHHHhcCCCCEEEEecHHH-------H
Confidence 99987642110 00 012334554444444444543 8899988888888885554 3
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCC
Q psy12625 206 NLVKLLRDMAH-QGTMIICTLHQP 228 (612)
Q Consensus 206 ~i~~~l~~l~~-~g~tvi~~~H~~ 228 (612)
++++.++.+.+ .+.|+|++||..
T Consensus 256 ~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 256 AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 56666677764 588999999964
No 132
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.45 E-value=4e-15 Score=141.60 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=42.9
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy12625 184 LSNPSIIFLDEPTT-GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231 (612)
Q Consensus 184 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 231 (612)
+.+|++|++|||++ ++|+..+..+.+++.+..++|+++|++||.+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45999999999996 9999999999999999888899999999998643
No 133
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.43 E-value=2.5e-13 Score=144.54 Aligned_cols=78 Identities=29% Similarity=0.409 Sum_probs=68.5
Q ss_pred cccCCCChhhhhHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc
Q psy12625 164 TLTKHLSGGQKKRL------SIALELLSN-PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236 (612)
Q Consensus 164 ~~~~~LSgGerqRv------~ia~aL~~~-p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~ 236 (612)
.++..||||||||+ ++|++|+.+ |++++|||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhC
Confidence 45678999999988 567889999 999999999999999999999999998753 468999999974 57899
Q ss_pred cceeeecC
Q psy12625 237 DYLYVLTE 244 (612)
Q Consensus 237 D~v~~L~~ 244 (612)
|++++|++
T Consensus 353 d~~~~l~k 360 (371)
T 3auy_A 353 DVIINVKK 360 (371)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999973
No 134
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=7.5e-15 Score=151.92 Aligned_cols=123 Identities=11% Similarity=0.131 Sum_probs=86.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE---CCEeccchH-hhc-cceEEEccCCCCC-----CCC
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI---NETRLQDHR-MLR-KESCYIMQDNLLQ-----ELL 122 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~---~g~~~~~~~-~~~-~~i~yv~Q~~~l~-----~~l 122 (612)
+.+|++++|+||||||||||+|+|+ +.+| .+|+|.+ +|+++.... ..+ +.+||++|++.+. +.+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~-----~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l 235 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL-----RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV 235 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC-----CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC-----cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence 3469999999999999999999999 8775 5799999 888754322 222 3689999998653 678
Q ss_pred CHHHHH--HHHH----HhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHH
Q psy12625 123 TVEESL--TVAA----HLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALE 182 (612)
Q Consensus 123 Tv~e~l--~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~a 182 (612)
|+ |++ .|+. .++.....+..+...+++++++.+||.+ ..+++++.|||.++|++.|||+
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSSC
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99 887 4431 0112111122233467899999999986 7888999999999999999874
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.42 E-value=7.4e-14 Score=129.30 Aligned_cols=96 Identities=14% Similarity=0.215 Sum_probs=72.3
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee--EEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG--YIEINETRLQDHRMLRKESCYIMQDNLLQEL 121 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G--~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~ 121 (612)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| .+.+++.++ ...
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~------~g~~~~~~~~~~~------------------~~~- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE------AGKNAAYIDAASM------------------PLT- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT------TTCCEEEEETTTS------------------CCC-
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh------cCCcEEEEcHHHh------------------hHH-
Confidence 456676 8999999999999999999999998753 23 333333221 000
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~ 201 (612)
+++.+|++|++|||++ +|.
T Consensus 79 ------------------------------------------------------------~~~~~~~lLilDE~~~-~~~ 97 (149)
T 2kjq_A 79 ------------------------------------------------------------DAAFEAEYLAVDQVEK-LGN 97 (149)
T ss_dssp ------------------------------------------------------------GGGGGCSEEEEESTTC-CCS
T ss_pred ------------------------------------------------------------HHHhCCCEEEEeCccc-cCh
Confidence 2356899999999998 665
Q ss_pred HHHHHHHHHHHHHHhCCCE-EEEEecCCch
Q psy12625 202 LNATNLVKLLRDMAHQGTM-IICTLHQPSA 230 (612)
Q Consensus 202 ~~~~~i~~~l~~l~~~g~t-vi~~~H~~~~ 230 (612)
..+..+.+++.++.++|++ +|+++|.+..
T Consensus 98 ~~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 98 EEQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 5588999999999888887 8889886543
No 136
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.40 E-value=2.7e-14 Score=146.76 Aligned_cols=130 Identities=14% Similarity=0.076 Sum_probs=88.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHH
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH 133 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 133 (612)
+++.+++|.||||||||||.+.|++++.+ .| .. ++.+.+|+||+.+++ .++++|+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~------~g------------~~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~ 88 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME------KY------------GG-EKSIGYASIDDFYLT-HEDQLKLNEQFK 88 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH------HH------------GG-GSCEEEEEGGGGBCC-HHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh------cC------------CC-CceEEEeccccccCC-hHHHHHHhcccc
Confidence 57899999999999999999999998763 12 01 345667799998886 488888877521
Q ss_pred ---hccCCCCCHHHHHHHHHHHHHHcCCc------c--ccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625 134 ---LKLGNQYSRKAKESKVDSIADSLSIS------T--CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202 (612)
Q Consensus 134 ---l~~~~~~~~~~~~~~v~~~l~~lgL~------~--~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 202 (612)
+......+.....+...+.++.+.-. + ........+||||+||+++|++...+|+|+|+||||+++|+.
T Consensus 89 ~~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 89 NNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp TCGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred ccchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 00000112222234556667766432 1 123344679999999999983333399999999999999985
Q ss_pred H
Q psy12625 203 N 203 (612)
Q Consensus 203 ~ 203 (612)
.
T Consensus 169 ~ 169 (290)
T 1odf_A 169 L 169 (290)
T ss_dssp C
T ss_pred c
Confidence 3
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.38 E-value=1.3e-15 Score=164.11 Aligned_cols=137 Identities=15% Similarity=0.113 Sum_probs=94.6
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------HhhccceEEEc---
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RMLRKESCYIM--- 113 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~~~~i~yv~--- 113 (612)
+.+|+++ + .++|++++|+|||||||||||++|+|+++| .+|+|.+.|.++... ...++.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~-----~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~ 228 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS-----SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARG 228 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC-----TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC-----CCCEEEEecccchhccCCcceEEEccccCcCHHHH
Confidence 4467777 4 389999999999999999999999999875 479999988775211 12334556655
Q ss_pred ------cCCCC--CCC----CCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625 114 ------QDNLL--QEL----LTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180 (612)
Q Consensus 114 ------Q~~~l--~~~----lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 180 (612)
|++.. ++. .|+++++.++..-... .........+.+ +.+..+|+.+.. .+.+|||||+|| ||
T Consensus 229 lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~~~~LSgg~~QR--La 303 (418)
T 1p9r_A 229 LRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--ISSSLLGVLAQR--LV 303 (418)
T ss_dssp HHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--HHHHEEEEEEEE--EE
T ss_pred HHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--HHHHHHHHHHHH--hh
Confidence 88765 343 5888888775421100 000111112223 346778987653 677899999999 99
Q ss_pred HHHhhCCCEEE
Q psy12625 181 LELLSNPSIIF 191 (612)
Q Consensus 181 ~aL~~~p~ill 191 (612)
++|+.+|++..
T Consensus 304 raL~~~p~~~~ 314 (418)
T 1p9r_A 304 RTLCPDCKEPY 314 (418)
T ss_dssp EEECTTTCEEE
T ss_pred hhhcCCCCccC
Confidence 99999999875
No 138
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.36 E-value=1e-13 Score=149.00 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=102.5
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHH
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE 125 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 125 (612)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.. .+...+++|.+++. ..+++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----------~i~~~~ft---Tl~p~~G~V~~~~~--~~~~l~ 210 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----------KIAPYPFT---TLSPNLGVVEVSEE--ERFTLA 210 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----------EECCCTTC---SSCCEEEEEECSSS--CEEEEE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----------cccCcccc---eecceeeEEEecCc--ceEEEE
Confidence 379999999999999999999999999999999742 11222211 11223444444320 001111
Q ss_pred HHHHHHHHhccCCCCCHHH--HHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy12625 126 ESLTVAAHLKLGNQYSRKA--KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203 (612)
Q Consensus 126 e~l~~~~~l~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 203 (612)
|+.-+.........+.... ..++++.++..++++ +..+.+||+||+||+++|++|+.+|.++++ +++|...
T Consensus 211 DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 211 DIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp ECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred eccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 1000000000000111110 011233344445554 566778999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHH-HhCCCEEEEEecCCchHHHhcccceee
Q psy12625 204 ATNLVKLLRDM-AHQGTMIICTLHQPSASLLNMADYLYV 241 (612)
Q Consensus 204 ~~~i~~~l~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~~ 241 (612)
+ ..++.+++. .+.+.+++.++......+.++++.+.-
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHH
Confidence 7 455555544 445766665554334457777776654
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=5.3e-13 Score=140.26 Aligned_cols=137 Identities=14% Similarity=0.164 Sum_probs=75.3
Q ss_pred EEEECCCCCcHHHHHHHHHC-CCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC
Q psy12625 59 SVILGPSGSGKTKLLDILAG-YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG 137 (612)
Q Consensus 59 ~aI~GpsGsGKSTLL~~l~g-~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~ 137 (612)
+.|.||||+|||||+++|++ +..| ..|++.++|.+.......+..+++++|.+.+.-..+ + ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~-----~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~-- 102 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP-----GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG-- 102 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT-----TCCC------------------CCEECSSEEEECCC--------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC-----CCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC--
Confidence 89999999999999999999 6654 468999998775433233567888988765321111 0 00
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy12625 138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217 (612)
Q Consensus 138 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 217 (612)
.......++.++++.+..++.+. . .+|| +..+|+++++|||++ ||+.++..+.+.+.+.. .
T Consensus 103 -~~~~~~~~~~i~~~~~~~~~~~~----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~ 163 (354)
T 1sxj_E 103 -NNDRIVIQELLKEVAQMEQVDFQ----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-K 163 (354)
T ss_dssp --CCHHHHHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-T
T ss_pred -CcchHHHHHHHHHHHHhcccccc----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-C
Confidence 00111122223333222233221 1 5666 788999999999999 99999999999998864 4
Q ss_pred CCEEEEEecCCch
Q psy12625 218 GTMIICTLHQPSA 230 (612)
Q Consensus 218 g~tvi~~~H~~~~ 230 (612)
++++|+++|++..
T Consensus 164 ~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 164 NIRLIMVCDSMSP 176 (354)
T ss_dssp TEEEEEEESCSCS
T ss_pred CCEEEEEeCCHHH
Confidence 6899999999763
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.34 E-value=3e-16 Score=173.28 Aligned_cols=175 Identities=15% Similarity=0.206 Sum_probs=108.9
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC-----
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL----- 117 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~----- 117 (612)
..+++++++.+++|+.++|+|||||||||||++|+|+++| .+|.|+++|.+-.... -...++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~-----~~giitied~~E~~~~-~~~~v~~~~r~~~~~~~~ 320 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP-----DAKVVSIEDTREIKLY-HENWIAEVTRTGMGEGEI 320 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT-----TCCEEEEESSCCCCCC-CSSEEEEECBCCSSSCCB
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC-----CCCEEEEcCcccccCC-CCCeEEEEeecccccCCc
Confidence 4578999999999999999999999999999999999986 5799999886411111 1234555555433
Q ss_pred -----------------CCCCCCHHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHHcC-----Ccc----ccC---cccC
Q psy12625 118 -----------------LQELLTVEESLTVAAHLKLGNQ-YSRKAKESKVDSIADSLS-----IST----CKN---TLTK 167 (612)
Q Consensus 118 -----------------l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~v~~~l~~lg-----L~~----~~~---~~~~ 167 (612)
++..++..|++.+......+.. ++. .....+.++++++. +.. ..+ ....
T Consensus 321 ~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~ 399 (511)
T 2oap_1 321 DMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTM 399 (511)
T ss_dssp CHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEE
T ss_pred CHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEE
Confidence 2234555555443322221100 000 00001223333332 221 112 2234
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCchHHHhccc
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC--TLHQPSASLLNMAD 237 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~--~~H~~~~~i~~~~D 237 (612)
.+|||||||.+++. + | |+|||+.+...+++.+.++.+++.|+++ ++|+.. ++...++
T Consensus 400 ~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 400 WVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp EESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred EEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 58999999987652 1 7 9999998887777777777667888875 889865 4555553
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.33 E-value=1.3e-12 Score=139.99 Aligned_cols=152 Identities=11% Similarity=0.091 Sum_probs=91.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHH--HHCCCCCCCCCCceeEEEECCEeccchH---hhccceEEEccCCCCCCCCCHH
Q psy12625 51 GVFVSKELSVILGPSGSGKTKLLDI--LAGYRRPKKTETNSGYIEINETRLQDHR---MLRKESCYIMQDNLLQELLTVE 125 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTLL~~--l~g~~~p~~~~~~~G~I~~~g~~~~~~~---~~~~~i~yv~Q~~~l~~~lTv~ 125 (612)
+-+++|++++|+||||||||||++. +++..++..+....+.++++++...... .+.+.+++.+| ++.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vl 244 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DAL 244 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHh
Confidence 5799999999999999999999994 4566654221123457777776521111 11223333222 222
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh--hhHHHHHHHHh--hCCCEEEEeCCCCCCCH
Q psy12625 126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ--KKRLSIALELL--SNPSIIFLDEPTTGLDY 201 (612)
Q Consensus 126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe--rqRv~ia~aL~--~~p~illlDEPtsgLD~ 201 (612)
+|+.+ .....++ .+.+.-+.+++ .+|+++++||||+.+|+
T Consensus 245 eni~~------------------------------------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 245 NNVAY------------------------------------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HTEEE------------------------------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred hcEEE------------------------------------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 22211 0011111 22222222222 47999999999999997
Q ss_pred HHH------------HHHHHHHHHHHh-CCCEEEEEecCCc------------------hHHHhcccceeeecCCe
Q psy12625 202 LNA------------TNLVKLLRDMAH-QGTMIICTLHQPS------------------ASLLNMADYLYVLTEGY 246 (612)
Q Consensus 202 ~~~------------~~i~~~l~~l~~-~g~tvi~~~H~~~------------------~~i~~~~D~v~~L~~G~ 246 (612)
... .++++.|+++++ .|.|||+++|... ..+.+.+|.++.|++++
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 533 678888999987 5999999999821 12456788888887653
No 142
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.28 E-value=6.1e-15 Score=157.24 Aligned_cols=175 Identities=13% Similarity=0.126 Sum_probs=122.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCC----CC---CCCCceeEEEECCEeccchHh-h--ccc---eEEEccCCCC
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRR----PK---KTETNSGYIEINETRLQDHRM-L--RKE---SCYIMQDNLL 118 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~----p~---~~~~~~G~I~~~g~~~~~~~~-~--~~~---i~yv~Q~~~l 118 (612)
.+++|..++|+|+||||||||+|+|+|... +. ...+.+|.+.++|..+..... + ++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999321 10 112478999999854321111 1 222 3467788887
Q ss_pred CCCCCHHHHH--HHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCC--CEEEEeC
Q psy12625 119 QELLTVEESL--TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNP--SIIFLDE 194 (612)
Q Consensus 119 ~~~lTv~e~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p--~illlDE 194 (612)
.+..+..|++ .|...++. ++.++..++.. .+..+..+||+. +| ++.++||
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhcc--ccceeeeecccc------------Ccchhhhhchh
Confidence 7777766655 34333321 11122222221 245555677764 89 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhccccee-eecCC-eEEEecCccC
Q psy12625 195 PTTGLDYLNATNLVKLLRDM-AHQGTMIICTLHQPSASLLNMADYLY-VLTEG-YCTYQGTVPG 255 (612)
Q Consensus 195 PtsgLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G-~iv~~G~~~~ 255 (612)
|+.++|+....+.++.++++ ++.|.|++ +|+.. .+.++||++. +|.+| ++++.|+.++
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence 99999999999999999998 76777764 89865 6889999999 99999 8888776543
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.27 E-value=4e-14 Score=138.17 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=80.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHH
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAA 132 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 132 (612)
.++|++++|+||||||||||+++|+|+++|. +...|.|.++|..+... .. ...+....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~--g~~~g~v~~d~~~~~~~-~~-~~~~~~~~------------------ 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ--GLPAEVVPMDGFHLDNR-LL-EPRGLLPR------------------ 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT--TCCEEEEESGGGBCCHH-HH-GGGTCGGG------------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCceEEEecCCCcCCHH-HH-HHhccccc------------------
Confidence 5799999999999999999999999998742 12356666555442111 00 00000000
Q ss_pred HhccCCCCCHHHHHHHHHHHHHHcC----CccccCcccCCCChhhhhHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy12625 133 HLKLGNQYSRKAKESKVDSIADSLS----ISTCKNTLTKHLSGGQKKRLSIA-LELLSNPSIIFLDEPTTGLDYLNATNL 207 (612)
Q Consensus 133 ~l~~~~~~~~~~~~~~v~~~l~~lg----L~~~~~~~~~~LSgGerqRv~ia-~aL~~~p~illlDEPtsgLD~~~~~~i 207 (612)
...+.... .....+.+..+. +..........+|+||+||++++ ++++.++.++++|||..
T Consensus 77 -~~~~~~~~----~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~---------- 141 (208)
T 3c8u_A 77 -KGAPETFD----FEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW---------- 141 (208)
T ss_dssp -TTSGGGBC----HHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG----------
T ss_pred -CCCCchhh----HHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh----------
Confidence 00000111 111222222221 11111122235799999999998 88888888888898841
Q ss_pred HHHHHHHHhCCCEEEEEecCCchHHHhcccc
Q psy12625 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADY 238 (612)
Q Consensus 208 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~ 238 (612)
.++.+.--.++++.++....+.+...|
T Consensus 142 ----~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 ----RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp ----GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred ----HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 111222235677777655445666666
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.27 E-value=2.4e-14 Score=150.14 Aligned_cols=171 Identities=19% Similarity=0.239 Sum_probs=111.0
Q ss_pred cccccccceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch-Hhh-ccceEE
Q psy12625 41 KSKDILKDISGVFVSK-------ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-RML-RKESCY 111 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~G-------e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~-~~~i~y 111 (612)
+.+.+++++++.+++| +.++|.||||+|||||+++|+|..... ....+|.+..++.++... ... ++.+.+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-~~~~sg~~~~~~~~l~~~~~~~~~~~v~~ 107 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQGDMAAILTSLERGDVLF 107 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-EEEEETTTCCSHHHHHHHHHHCCTTCEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEechHhcCHHHHHHHHHHccCCCEEE
Confidence 5567899999999887 899999999999999999999986310 012456665555443211 112 457999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCE
Q psy12625 112 IMQDNLLQELLTVEESLTVAAHLKLGNQ--YSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSI 189 (612)
Q Consensus 112 v~Q~~~l~~~lTv~e~l~~~~~l~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~i 189 (612)
++|.+.+.+ ++.|++....... ... .......+.++..++.+++.. +++.++.||+|+|||+.++
T Consensus 108 iDE~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~--------- 174 (334)
T 1in4_A 108 IDEIHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII--------- 174 (334)
T ss_dssp EETGGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE---------
T ss_pred EcchhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce---------
Confidence 999887765 7888885433221 100 001122344566667777766 7788899999999998655
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccc
Q psy12625 190 IFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADY 238 (612)
Q Consensus 190 lllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~ 238 (612)
.+||+.+..++.++|++.++ .+ +.|++. .+..++++
T Consensus 175 -------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 175 -------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp -------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred -------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 78888899999999999876 34 246643 34445543
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.26 E-value=2.5e-15 Score=153.30 Aligned_cols=131 Identities=16% Similarity=0.223 Sum_probs=92.7
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCC-C
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDN-L 117 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~-~ 117 (612)
+...+++++++.+++| ++|.||||||||||+++|+|...+ |.|.++|.++... ....+.+++++|+. .
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-------~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~ 101 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-------NFISVKGPELLNMYVGESERAVRQVFQRAKN 101 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-------EEEEEETTTTCSSTTHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-------CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh
Confidence 4566899999999999 999999999999999999998763 7899999775332 23345677777764 4
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625 118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197 (612)
Q Consensus 118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts 197 (612)
..|.+++.|++......+ .. ...+ .+....++...+|||||+||+.|++++..+|++| |||+.
T Consensus 102 ~~p~i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCPRR-------SD--RETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp TCSEEEEEETCTTTCC------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred cCCCeEeeehhhhhhccc-------CC--Ccch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 455556666554321000 00 0000 1234456667789999999999999999999986 88864
No 146
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.21 E-value=2.1e-15 Score=146.32 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=84.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCCCCC--------CCCceeEEEECCEecc--chHhhccceEEEccCCCCCCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKK--------TETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLT 123 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~--------~~~~~G~I~~~g~~~~--~~~~~~~~i~yv~Q~~~l~~~lT 123 (612)
++|++++|+||||||||||+++|+|+.+... ..+..|+ ++|.++. +...+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 5899999999999999999999999764100 0012344 3554332 122333322 2332221 122
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCC-ChhhhhHHHHHH-HHhhCCCEEEEeCCCCCCCH
Q psy12625 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL-SGGQKKRLSIAL-ELLSNPSIIFLDEPTTGLDY 201 (612)
Q Consensus 124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L-SgGerqRv~ia~-aL~~~p~illlDEPtsgLD~ 201 (612)
+.+|+ + ..++ +.+++.++.-. ....+..+.++ .-.++ ++ .++ +++.+|++++|||+|+++|.
T Consensus 76 ~~~n~-~--------g~~~----~~i~~~~~~~~-~~~~~~~~~g~~~~~~~-~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNL-Y--------GTSK----EAVRAVQAMNR-ICVLDVDLQGVRSIKKT-DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEE-E--------EEEH----HHHHHHHHTTC-EEEEECCHHHHHHHTTS-SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCcc-C--------CCCH----HHHHHHHHcCC-cEEEECCHHHHHHHHhc-CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 22221 1 1111 22333333210 00001000000 00011 22 455 67888889999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625 202 LNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244 (612)
Q Consensus 202 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 244 (612)
.+...+.+.|.+..++ +...|.+ ..+|+++++++
T Consensus 140 ~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 9999999999887653 1234521 56899888764
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.21 E-value=9.2e-13 Score=136.01 Aligned_cols=120 Identities=14% Similarity=0.118 Sum_probs=71.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE---CCEeccchHh-hccceEEEccCCCCCC----CC
Q psy12625 51 GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI---NETRLQDHRM-LRKESCYIMQDNLLQE----LL 122 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~---~g~~~~~~~~-~~~~i~yv~Q~~~l~~----~l 122 (612)
+++.+|++++|+||||+|||||+|+|+|..+| .+|+|.+ +|+.+..... ++..++|++|.+.+.+ .+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~-----~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~l 242 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL-----RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDI 242 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------CCCCCEEEETTEEEESSCSCSSCCCTTC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc-----cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccC
Confidence 34568999999999999999999999999875 5899998 7876433222 2223899999987765 68
Q ss_pred CHHHHHH--HHHH------hccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625 123 TVEESLT--VAAH------LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176 (612)
Q Consensus 123 Tv~e~l~--~~~~------l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 176 (612)
|+ |++. |... ++........+....++++++.++|.+...+....++.|++||
T Consensus 243 t~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 243 EE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp CH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred CH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 99 8883 3311 1211111122334568999999999876655666777787763
No 148
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.20 E-value=4.3e-13 Score=138.60 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=73.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE---CCEeccchHh-hc-cceEEEccCCC---------
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI---NETRLQDHRM-LR-KESCYIMQDNL--------- 117 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~---~g~~~~~~~~-~~-~~i~yv~Q~~~--------- 117 (612)
++.+|++++|+||||||||||||+|+|+.+| .+|+|.+ +|+++..... .+ +.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~-----~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~ 239 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL-----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDI 239 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC-----C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSS
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccc-----cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcC
Confidence 3457999999999999999999999999886 5899999 8887543221 22 36899999974
Q ss_pred -------CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCCh
Q psy12625 118 -------LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSG 171 (612)
Q Consensus 118 -------l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg 171 (612)
++|.+|+ ||+.|.. .. ...+...+++++++.+||. +..++++..||+
T Consensus 240 ~~~~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 240 EPEELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp CHHHHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5788898 8887642 11 1123345789999999995 778888888886
No 149
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.12 E-value=1.6e-12 Score=134.78 Aligned_cols=139 Identities=12% Similarity=0.104 Sum_probs=96.7
Q ss_pred eEEEEeEEEEEEeeccccccccccccccceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVF-------------------VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.|+++||++.| .++++++|+.+ ++|++++|+||||||||||+++|+|++
T Consensus 37 ~i~~~~v~~~y------------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 37 DLSLEEVAEIY------------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp TCCHHHHHHTH------------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccchHhHHHHH------------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46667776654 35889999887 899999999999999999999999987
Q ss_pred C--CCCCCCceeEEEE---CCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q psy12625 81 R--PKKTETNSGYIEI---NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155 (612)
Q Consensus 81 ~--p~~~~~~~G~I~~---~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~ 155 (612)
. | .+|+|.+ +|... . ...++.++++ |+..+++.+|+.+++.+...++.+..
T Consensus 105 ~~~~-----~~G~i~vi~~d~~~~-~-~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~---------------- 160 (308)
T 1sq5_A 105 SRWP-----EHRRVELITTDGFLH-P-NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP---------------- 160 (308)
T ss_dssp TTST-----TCCCEEEEEGGGGBC-C-HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS----------------
T ss_pred hhCC-----CCCeEEEEecCCccC-c-HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC----------------
Confidence 6 4 5799999 88763 2 2234567888 87778888999999988765542110
Q ss_pred cCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201 (612)
Q Consensus 156 lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~ 201 (612)
.+ ..+.-+.+.+ +|+..+.+.+.+|+++|+|.|....|.
T Consensus 161 -~i----~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 161 -NV----TAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -CE----EECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -ce----eccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 00 1111112222 333322344567899999999998874
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.07 E-value=7e-11 Score=122.08 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=80.9
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHH
Q psy12625 49 ISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESL 128 (612)
Q Consensus 49 vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 128 (612)
+++..++|++++|+|||||||||+++.|++...+ ..|+|.+.+.+..... ..|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-----~g~kV~lv~~D~~r~~--------------------a~e-- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-----EGKSVVLAAADTFRAA--------------------AIE-- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-----TTCCEEEEEECTTCHH--------------------HHH--
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-----cCCEEEEEccccccHH--------------------HHH--
Confidence 4555678999999999999999999999998764 3467777665521100 001
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625 129 TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL---SIALELLSNPSIIFLDEPTTGLDYLNAT 205 (612)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv---~ia~aL~~~p~illlDEPtsgLD~~~~~ 205 (612)
....+.+.+|+.. +...|||+.+++ ++++++..+|+++++|||.. .....
T Consensus 150 -------------------qL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 150 -------------------QLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp -------------------HHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred -------------------HHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 1233445566653 345789999999 99999999999999999974 34455
Q ss_pred HHHHHHHHHH
Q psy12625 206 NLVKLLRDMA 215 (612)
Q Consensus 206 ~i~~~l~~l~ 215 (612)
.+++.|+++.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.07 E-value=9.5e-12 Score=123.41 Aligned_cols=173 Identities=12% Similarity=0.088 Sum_probs=90.8
Q ss_pred cccccce-EEEEeCCeEEEEECCCCCcHHHHHHHH-HCCCCCCCCCCceeEEEECCEeccch-HhhccceEEEccCCCCC
Q psy12625 43 KDILKDI-SGVFVSKELSVILGPSGSGKTKLLDIL-AGYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIMQDNLLQ 119 (612)
Q Consensus 43 ~~iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~l-~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~Q~~~l~ 119 (612)
.+.|+++ .+-+++|++++|.||||||||||+..+ .+..+. ..+.+++++...... ....+.+++.+|+....
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-----~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~ 83 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-----GEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEK 83 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHH
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhC
Confidence 3456777 778999999999999999999995544 444331 124455554331110 11112233333321000
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh--hCCCEEEEeCCCC
Q psy12625 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL--SNPSIIFLDEPTT 197 (612)
Q Consensus 120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~--~~p~illlDEPts 197 (612)
..+++.+. .. ..++.....+.....-+....+....++.++ .+|+++++|||++
T Consensus 84 ~~l~~~~~------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 84 GMFAMVDA------------FT------------AGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp TSEEEEEC------------ST------------TTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred CcEEEEec------------ch------------hhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 00000000 00 0000000000000001112222233333333 5799999999999
Q ss_pred CC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCchH-------HHhcccceeeecC
Q psy12625 198 GL--DYLNATNLVKLLRDMA-HQGTMIICTLHQPSAS-------LLNMADYLYVLTE 244 (612)
Q Consensus 198 gL--D~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~-------i~~~~D~v~~L~~ 244 (612)
.+ |+....+.+..+.+++ +.|.||++++|..... +.+.+|.++.|+.
T Consensus 140 l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 140 LYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 88 6655566666666665 4789999999986531 4577899999864
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.01 E-value=8.4e-11 Score=128.31 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=113.5
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee-EEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG-YIEINETRLQDHRMLRKESCYIMQDNLLQELL 122 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G-~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l 122 (612)
..|+++.+-+++|+++.|.|+||+|||||+..+++...+ ..| .|.+.+.+.......++..+.... .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~-----~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~ 258 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT-----KTNENVAIFSLEMSAQQLVMRMLCAEGN-------I 258 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH-----HSSCCEEEEESSSCHHHHHHHHHHHHHT-------C
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHHHHcC-------C
Confidence 468888888999999999999999999999999885432 123 344433221111111110000000 0
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh--hCCCEEEEeCCCCCCC
Q psy12625 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL--SNPSIIFLDEPTTGLD 200 (612)
Q Consensus 123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~--~~p~illlDEPtsgLD 200 (612)
.. +. ++.+ ..+.. ..+++.+.++.++..+..-....++|.+|.+ +.++.++ .+|+++++|+++...+
T Consensus 259 ~~-~~------l~~g-~l~~~-~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 259 NA-QN------LRTG-KLTPE-DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp CH-HH------HHTS-CCCHH-HHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred CH-HH------HhcC-CCCHH-HHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 00 01 1111 22322 2345555666665444332334679999987 5667776 6899999999998774
Q ss_pred --------HHHHHHHHHHHHHHHh-CCCEEEEEec---------C--Cc-------hHHHhcccceeeecCCeE
Q psy12625 201 --------YLNATNLVKLLRDMAH-QGTMIICTLH---------Q--PS-------ASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 201 --------~~~~~~i~~~l~~l~~-~g~tvi~~~H---------~--~~-------~~i~~~~D~v~~L~~G~i 247 (612)
.....++.+.|+.+++ .|.+||+++| + |. ..+.+.+|.|++|..++.
T Consensus 328 ~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 328 SGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 3344678888888886 5999999999 2 32 136778999999987653
No 153
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.97 E-value=4.9e-13 Score=136.28 Aligned_cols=127 Identities=13% Similarity=0.237 Sum_probs=84.6
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCC-
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNL- 117 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~- 117 (612)
+...+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.++.+. ...++.+++++|+..
T Consensus 60 ~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 130 (278)
T 1iy2_A 60 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKR 130 (278)
T ss_dssp HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3456889999999999 89999999999999999999764 58899988664221 122344667777643
Q ss_pred CCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCE
Q psy12625 118 LQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSI 189 (612)
Q Consensus 118 l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~i 189 (612)
..+.+++.|++......+.. ......+..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 131 ~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 131 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp SCSEEEEEETHHHHHCC--------CHHHHHHHHHHH-------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEecCCchh
Confidence 45667777777432211100 0001122223333333 35899999999999999999976
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.97 E-value=1e-09 Score=112.87 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=83.2
Q ss_pred cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHH
Q psy12625 47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEE 126 (612)
Q Consensus 47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 126 (612)
++++++ +|++++++|+||+||||++..|++...+ ..|+|.+.+.++...... +
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~-----~~~~v~l~~~d~~~~~~~--------------------~ 143 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-----KGRRPLLVAADTQRPAAR--------------------E 143 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH-----TTCCEEEEECCSSCHHHH--------------------H
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEecCCcccHhHH--------------------H
Confidence 678887 9999999999999999999999998764 357888877664221110 0
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q psy12625 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP-TTGLDYLNAT 205 (612)
Q Consensus 127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP-tsgLD~~~~~ 205 (612)
.+ ..+.+..|+....... .-+-.+.+|.+|+.+...+++++|+||| ++++|.....
T Consensus 144 ql---------------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 144 QL---------------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp HH---------------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred HH---------------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 00 0112233443321100 1223345688999988899999999999 9999998888
Q ss_pred HHHHHHHHHH
Q psy12625 206 NLVKLLRDMA 215 (612)
Q Consensus 206 ~i~~~l~~l~ 215 (612)
++.+..+.+.
T Consensus 201 ~l~~~~~~~~ 210 (295)
T 1ls1_A 201 ELARLKEVLG 210 (295)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHhhhcC
Confidence 8888777664
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.96 E-value=5.7e-10 Score=117.47 Aligned_cols=77 Identities=26% Similarity=0.205 Sum_probs=52.5
Q ss_pred HHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCch------
Q psy12625 176 RLSIALELLSN--PSIIFLDEPTTGL----------DY---LNATNLVKLLRDM----AHQGTMIICTLHQPSA------ 230 (612)
Q Consensus 176 Rv~ia~aL~~~--p~illlDEPtsgL----------D~---~~~~~i~~~l~~l----~~~g~tvi~~~H~~~~------ 230 (612)
-+.++++++.+ |+++++|||++.+ |+ ..+..+.+.++++ ++.|.+||+++|....
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 45577888755 9999999999998 33 2223445555555 3469999999996431
Q ss_pred ---------HHHhcccceeeecCCeEEEecC
Q psy12625 231 ---------SLLNMADYLYVLTEGYCTYQGT 252 (612)
Q Consensus 231 ---------~i~~~~D~v~~L~~G~iv~~G~ 252 (612)
.+...+|.++.++.++++..|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2457889888888877665554
No 156
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.95 E-value=6.5e-13 Score=133.31 Aligned_cols=131 Identities=15% Similarity=0.251 Sum_probs=85.7
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCC-
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNL- 117 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~- 117 (612)
+...+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.++... ...++.+++++|+..
T Consensus 36 ~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 106 (254)
T 1ixz_A 36 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKR 106 (254)
T ss_dssp HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTT
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3456899999999999 89999999999999999999764 57888888654211 122344666777642
Q ss_pred CCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC
Q psy12625 118 LQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP 195 (612)
Q Consensus 118 l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP 195 (612)
..+.+++.|++......+.. ......+..+.+.+++ ..|||||+||+.+++++..+|++ +|++
T Consensus 107 ~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 107 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp SSSEEEEEETHHHHHC---------CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 45566777776432211100 0001122233334433 35789999999999999999986 4544
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.94 E-value=1.1e-10 Score=111.67 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=77.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCCCCC------ceeEEEECCEecc----chHhhccceEEEccCCCC-CCCCCHHH
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRRPKKTET------NSGYIEINETRLQ----DHRMLRKESCYIMQDNLL-QELLTVEE 126 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~------~~G~I~~~g~~~~----~~~~~~~~i~yv~Q~~~l-~~~lTv~e 126 (612)
.++|+|+||||||||++.++|...+....+ .+|+|.++|+++. +.....+..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 689999999999999999999865422111 4789999997642 111111112222221000 00011111
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC----ccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSI----STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202 (612)
Q Consensus 127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 202 (612)
...... . +......+++-+...- ....++ -+|..-..++..+|++++.+|+++++| ||++|..
T Consensus 111 ~~~~~s-~--------~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 IAKHLT-Y--------ENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp TTCHHH-H--------HTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred CcCHHH-H--------HHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 100000 0 0000011111110000 000111 123333345688999999999999999 9999999
Q ss_pred HHHHHHHHHHHH
Q psy12625 203 NATNLVKLLRDM 214 (612)
Q Consensus 203 ~~~~i~~~l~~l 214 (612)
+..++++.|.+.
T Consensus 178 ~v~~l~~~l~~~ 189 (191)
T 1oix_A 178 NVEAAFQTILTE 189 (191)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999988653
No 158
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.93 E-value=1.1e-09 Score=112.60 Aligned_cols=141 Identities=16% Similarity=0.259 Sum_probs=89.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHH
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH 133 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 133 (612)
++|++++++||||+||||+++.|++...+ .+| +.+.++.+|.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-----~~G----------------~~V~lv~~D~~---r~~a~eqL~~~~- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-----EKH----------------KKIAFITTDTY---RIAAVEQLKTYA- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-----TTC----------------CCEEEEECCCS---STTHHHHHHHHH-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-----hcC----------------CEEEEEecCcc---cchHHHHHHHHH-
Confidence 47999999999999999999999998753 123 24666666542 234555554322
Q ss_pred hccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy12625 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213 (612)
Q Consensus 134 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 213 (612)
+..|+..... .+ ++.-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 158 --------------------~~~gl~~~~~-----~~-~~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 158 --------------------ELLQAPLEVC-----YT-KEEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp --------------------TTTTCCCCBC-----SS-HHHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred --------------------HhcCCCeEec-----CC-HHHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 1123321110 12 233345555 45999999999 999998766555544433
Q ss_pred HH---hCCCEEEE-EecCCchHHHhcccceeeecCCeEEEe
Q psy12625 214 MA---HQGTMIIC-TLHQPSASLLNMADYLYVLTEGYCTYQ 250 (612)
Q Consensus 214 l~---~~g~tvi~-~~H~~~~~i~~~~D~v~~L~~G~iv~~ 250 (612)
+. ..+.++++ ++|+.. ++.+.+|++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEe
Confidence 32 22334555 478754 67788898887777777764
No 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.92 E-value=3.3e-11 Score=116.36 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=46.1
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCCCCCCCCHHH
Q psy12625 50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNLLQELLTVEE 126 (612)
Q Consensus 50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e 126 (612)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..+... ...+..++|++|++..++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 56788999999999999999999999999853 255555443221 223567899999876555444433
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.92 E-value=4.9e-11 Score=130.91 Aligned_cols=161 Identities=11% Similarity=0.151 Sum_probs=99.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHC--CCCCCCCCCceeEEEECCEeccc--hHhhccceEEEccCCCCCC--C
Q psy12625 48 DISGVFVSKELSVILGPSGSGKTKLLDILAG--YRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQE--L 121 (612)
Q Consensus 48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g--~~~p~~~~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~--~ 121 (612)
.+++.+.++..++|.|++||||||+|+.|.. +.++ ..|++.+.+.+... ...+.. + +.+.. .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~-----~p~~v~l~liDpK~~el~~~~~----l---Phl~~~Vv 226 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA-----QPEDVRFIMIDPKMLELSVYEG----I---PHLLTEVV 226 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC-----CTTTEEEEEECCSSSGGGGGTT----C---TTBSSSCB
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC-----CCceEEEEEECCchhhhhhhcc----C---Ccccceee
Confidence 4778888999999999999999999999875 3332 23556555544322 111211 0 11100 0
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc---ccCCCChhhhhHH----------HHHHHHhhCCC
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT---LTKHLSGGQKKRL----------SIALELLSNPS 188 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---~~~~LSgGerqRv----------~ia~aL~~~p~ 188 (612)
-.+.+... .++. ...+.++| .+.++..|+.+..+. ....+||||+||. .+++++...|.
T Consensus 227 td~~~a~~---~L~~----~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 227 TDMKDAAN---ALRW----CVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp CSHHHHHH---HHHH----HHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred cCHHHHHH---HHHH----HHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCc
Confidence 11222111 1111 12334444 377888998765432 2236899999863 35666778898
Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEecCCc
Q psy12625 189 -IIFLDEPTTGLDYLNATNLVKLLRDMAHQ----GTMIICTLHQPS 229 (612)
Q Consensus 189 -illlDEPtsgLD~~~~~~i~~~l~~l~~~----g~tvi~~~H~~~ 229 (612)
++++||+++-+|.. ...+.+.+.++++. |.++|++||.|+
T Consensus 299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 78999999998843 35566777666543 779999999997
No 161
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.91 E-value=2.3e-13 Score=134.78 Aligned_cols=193 Identities=11% Similarity=0.005 Sum_probs=70.8
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHH-CCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA-GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~-g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~ 120 (612)
+.+..+++|+++++|++++|+||||||||||+++|+ |+.++ ..+.+.+...+.. ......+.|.+++...+.
T Consensus 13 ~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-----~~~~~~~~~~~~~--~g~~~g~~~~~~~~~~~~ 85 (231)
T 3lnc_A 13 EAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN-----IVKSVSVTTRAAR--KGEKEGKDYYFVDREEFL 85 (231)
T ss_dssp ---------CCEECCCEEEEECSCC----CHHHHHHC----C-----EEECCCEESSCCC--TTCCBTTTBEECCHHHHH
T ss_pred hhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC-----cccccccCCCCCC--ccccCCCeEEEecHHHhh
Confidence 356789999999999999999999999999999999 98742 1111111111100 001123345555443332
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH-HHH-HHHhhCCCEEEEeCCCCC
Q psy12625 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL-SIA-LELLSNPSIIFLDEPTTG 198 (612)
Q Consensus 121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv-~ia-~aL~~~p~illlDEPtsg 198 (612)
.+++.+++..... ...... ....+.+++.++.-. .-..+-.+.. ...-+++. .-+ ..++..|+...+||++.+
T Consensus 86 ~~~~~~~~~~~~~--~~~~~~-~~~~~~i~~~~~~~~-~vild~~~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~ 160 (231)
T 3lnc_A 86 RLCSNGEIIEHAE--VFGNFY-GVPRKNLEDNVDKGV-STLLVIDWQG-AFKFMEMMREHVVSIFIMPPSMEELRRRLCG 160 (231)
T ss_dssp HHHHTTCEEEEEE--ETTEEE-EEECTTHHHHHHHTC-EEEEECCHHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC---
T ss_pred hhhhcCceehhhh--hccccC-CCCHHHHHHHHHcCC-eEEEEcCHHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHHHH
Confidence 2222211110000 000000 000112333333311 1111100000 01112322 111 223556777788899999
Q ss_pred CCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625 199 LDYLNATNLVKLLRDMAH-----QGTMIICTLHQPSASLLNMADYLYVLTEGYC 247 (612)
Q Consensus 199 LD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 247 (612)
.|..+...+.+.|++... +...++++.|++. ++.+..++++-..+++.
T Consensus 161 R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e-~~~~~l~~~i~~~~~~~ 213 (231)
T 3lnc_A 161 RRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIE-ETADRISNILRAEQMKT 213 (231)
T ss_dssp -----------CHHHHHHHHTTGGGSSEEEECSSHH-HHHHHHHHHHHHHHTBG
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHH-HHHHHHHHHHHHHhhcc
Confidence 998888887777765432 1345666667643 56666666665545554
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.91 E-value=2.2e-11 Score=137.66 Aligned_cols=161 Identities=12% Similarity=0.079 Sum_probs=102.2
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC---
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL--- 117 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~--- 117 (612)
+...+++++++.+++|+.++|+||||+|||||+++|++..++. ..|.+.+++.+.. .....++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~----~~~~~~~~~~~~~---~~~p~i~~~p~g~~~~~ 117 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE----TLEDILVFPNPED---ENMPRIKTVPACQGRRI 117 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS----SCEEEEEECCTTC---TTSCEEEEEETTHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc----cCCeEEEeCCccc---ccCCcEEEEecchHHHH
Confidence 5567899999999999999999999999999999999998752 3488888876632 23456888877431
Q ss_pred -------------------CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 118 -------------------LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 118 -------------------l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
.+..+++.+|+.....-..+...- .+.....-+.+|.-+......+++|+|++|++.
T Consensus 118 ~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v----~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 118 VEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI----DATGAHAGALLGDVRHDPFQSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEE----ECTTCCHHHHHCEECCCCC----CCCCGGGGEE
T ss_pred HHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEE----EcCCCCHHhcCceEEechhhcCCcccccccccc
Confidence 111111111111000000000000 000001122233322233344679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy12625 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213 (612)
Q Consensus 179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 213 (612)
.++....++.+||+||... |++..+..+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899988888888764
No 163
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.88 E-value=4.5e-10 Score=122.43 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=47.8
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
..+|+|+|+++++ |+++|+|||||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP-----DLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC-----CTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC-----CCCEEEECCEEcc
Confidence 4589999999999 99999999999999999999999886 5799999998764
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.70 E-value=4.3e-10 Score=111.14 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=41.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch----------HhhccceEEEccC
Q psy12625 50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH----------RMLRKESCYIMQD 115 (612)
Q Consensus 50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~----------~~~~~~i~yv~Q~ 115 (612)
++++++ ++++|+|||||||||||++|+|++.| .+|+|.++|.++... ...+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP-----DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC-----CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc-----CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999999886 579999999875211 1235679999984
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.68 E-value=1.2e-08 Score=98.00 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy12625 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215 (612)
Q Consensus 176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~ 215 (612)
....|++++.+|++.++| ||++|..+..++.+.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456799999999999999 99999999999999887654
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.60 E-value=8.5e-08 Score=101.42 Aligned_cols=150 Identities=19% Similarity=0.192 Sum_probs=89.9
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHCCCCCC------CCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHH
Q psy12625 55 SKEL-SVILGPSGSGKTKLLDILAGYRRPK------KTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEES 127 (612)
Q Consensus 55 ~Ge~-~aI~GpsGsGKSTLL~~l~g~~~p~------~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 127 (612)
+|-. ++|+|+||||||||+|.|+|...+. ..+..+|.+.++|.++. +....|++.+.+. ..|...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~----l~DT~G~i~~lp~----~lve~f 248 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM----LVDTVGFIRGIPP----QIVDAF 248 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE----EEECCCBCSSCCG----GGHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE----EEeCCCchhcCCH----HHHHHH
Confidence 3444 9999999999999999999976421 01136799999987641 2233555554221 112111
Q ss_pred HHHHHHhcc--------CCCCCH---HHHHHHHHHHHHHcCCcccc----CcccCCCChhhhhHHHHH----HHH-hhCC
Q psy12625 128 LTVAAHLKL--------GNQYSR---KAKESKVDSIADSLSISTCK----NTLTKHLSGGQKKRLSIA----LEL-LSNP 187 (612)
Q Consensus 128 l~~~~~l~~--------~~~~~~---~~~~~~v~~~l~~lgL~~~~----~~~~~~LSgGerqRv~ia----~aL-~~~p 187 (612)
-.....++. ...-.. .+..+.+.++++.+++.+.. ..++..+|+|+++|+.++ +++ ..+|
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 000001110 001111 22233467788888875543 445667898999988887 555 3344
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy12625 188 SIIFLDEPTTGLDYLNATNLVKLLRDMAH 216 (612)
Q Consensus 188 ~illlDEPtsgLD~~~~~~i~~~l~~l~~ 216 (612)
++ +|+|++|..+...+.+.|.++..
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 54 89999999999999999988754
No 167
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.59 E-value=6.8e-11 Score=125.48 Aligned_cols=139 Identities=16% Similarity=0.090 Sum_probs=83.7
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC-CCCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL-LQEL 121 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~-l~~~ 121 (612)
..+++++|+.+++|++++|.||||||||||+++|+|.. .|++..-+.+ .+ .+...+++++|... ++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--------~g~~~~~~~~-~~--~~~~~lg~~~q~~~~l~dd 224 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--------GGKALNVNLP-LD--RLNFELGVAIDQFLVVFED 224 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--------CCEEECCSSC-TT--THHHHHGGGTTCSCEEETT
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--------CCcEEEEecc-ch--hHHHHHHHhcchhHHHHHH
Confidence 46899999999999999999999999999999999853 4666552211 11 11223566676653 2222
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH---cCCc-------------cccCcccCCCChhhhhHHHHHHHHhh
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS---LSIS-------------TCKNTLTKHLSGGQKKRLSIALELLS 185 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~---lgL~-------------~~~~~~~~~LSgGerqRv~ia~aL~~ 185 (612)
.+....+ .-+.... ........+...++. +.++ ...++....+++|+++|+..+.+++.
T Consensus 225 ~~~~~~~----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~ 299 (377)
T 1svm_A 225 VKGTGGE----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRP 299 (377)
T ss_dssp CCCSTTT----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCC
T ss_pred HHHHHHH----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCC
Confidence 2221110 0000000 000011223333321 0111 12344556799999999999888889
Q ss_pred CCCEEE-EeCCCC
Q psy12625 186 NPSIIF-LDEPTT 197 (612)
Q Consensus 186 ~p~ill-lDEPts 197 (612)
+|++++ ||+|+.
T Consensus 300 ~pDLliyLd~~~~ 312 (377)
T 1svm_A 300 KDYLKHCLERSEF 312 (377)
T ss_dssp CHHHHHHHHTCTH
T ss_pred CCCeEEEEeCCHH
Confidence 999987 999987
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.58 E-value=4e-08 Score=103.26 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=94.7
Q ss_pred cccceE--EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE-EECCEeccchHhhccceEEEccCCCCCCC
Q psy12625 45 ILKDIS--GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-EINETRLQDHRMLRKESCYIMQDNLLQEL 121 (612)
Q Consensus 45 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I-~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~ 121 (612)
-|+.+- +=+++|+++.|.||||||||||+..+++...+ ..|.+ ++++....+ ..+.+++++.+|+..+...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-----~gg~VlyId~E~s~~-~~ra~rlgv~~~~l~i~~~ 121 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-----MGGVAAFIDAEHALD-PVYAKNLGVDLKSLLISQP 121 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSCCCC-HHHHHHHTCCGGGCEEECC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEecccccc-hHHHHHcCCchhhhhhhhc
Confidence 345443 36899999999999999999999999986542 23444 666654222 2233456666665444444
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-----ccccCccc-CCCCh--hhhhHHHHHHHHhhCCCEEEEe
Q psy12625 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-----STCKNTLT-KHLSG--GQKKRLSIALELLSNPSIIFLD 193 (612)
Q Consensus 122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-----~~~~~~~~-~~LSg--GerqRv~ia~aL~~~p~illlD 193 (612)
.++.+.+.... .+++.-+. +....-.. .+++| ||+|+...||++.
T Consensus 122 ~~~e~~l~~~~------------------~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la--------- 174 (356)
T 3hr8_A 122 DHGEQALEIVD------------------ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS--------- 174 (356)
T ss_dssp SSHHHHHHHHH------------------HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH---------
T ss_pred cCHHHHHHHHH------------------HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH---------
Confidence 55555443321 11111111 11111111 12333 6777777777765
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc---------------hHHHhcccceeeecCCeEEEec
Q psy12625 194 EPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPS---------------ASLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 194 EPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~---------------~~i~~~~D~v~~L~~G~iv~~G 251 (612)
++++.|+.+++ .+.+||++.|-.. ..+...+|-++.+..+..+.+|
T Consensus 175 ------------~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g 236 (356)
T 3hr8_A 175 ------------QALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEG 236 (356)
T ss_dssp ------------HHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEEEEEEET
T ss_pred ------------HHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEeccccccC
Confidence 56777778776 5888888877621 1144678888888764333333
No 169
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.53 E-value=6e-08 Score=105.87 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=44.1
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEP----------TTGLDYLNATNLVKLLRDMA----HQGTMIICTLHQPS 229 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEP----------tsgLD~~~~~~i~~~l~~l~----~~g~tvi~~~H~~~ 229 (612)
|++++|-.++++....|.+||+||+ ++|.|......+.+++..+. +.+..||.+||++.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44677777777777777764 25778999999874
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.51 E-value=5.5e-09 Score=100.80 Aligned_cols=64 Identities=17% Similarity=0.076 Sum_probs=41.4
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHh-hccceEEEccCCCC
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM-LRKESCYIMQDNLL 118 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~-~~~~i~yv~Q~~~l 118 (612)
..+-....++|++++|+||||||||||+++|++.. |.+.++|.++..... .+...++++|++..
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADAFHSPENIATMQRGIPLTDEDR 83 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEcccccccHHHHHHHhcCCCCCCccc
Confidence 33334566899999999999999999999999853 778888876543221 22346777776443
No 171
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.40 E-value=1.7e-09 Score=118.70 Aligned_cols=132 Identities=14% Similarity=0.232 Sum_probs=84.5
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCC-C
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNL-L 118 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~-l 118 (612)
...+++++++.+++| +.|.||||+|||||+++|++... .|.+.++|.++.+. ....+.+..++|+.. .
T Consensus 52 ~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~ 122 (499)
T 2dhr_A 52 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRH 122 (499)
T ss_dssp CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSS
T ss_pred chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 345788999999999 89999999999999999999764 47888888765321 112233455566542 2
Q ss_pred CCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625 119 QELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197 (612)
Q Consensus 119 ~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts 197 (612)
.|.+.+.|++......+.. ......+.++.+.+++. .|||||+|+..|+++...+|++ |||+..
T Consensus 123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 3334444444221100000 00112233344455543 4789999999999999999987 788864
No 172
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.39 E-value=2.7e-07 Score=106.92 Aligned_cols=77 Identities=21% Similarity=0.120 Sum_probs=60.7
Q ss_pred CcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCchHHHhccccee
Q psy12625 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT-GLDYLNATNLVKLLRDMAHQGTMIICT-LHQPSASLLNMADYLY 240 (612)
Q Consensus 163 ~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~-~H~~~~~i~~~~D~v~ 240 (612)
++.+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+...+.++|+++ ||++. .+.+++++.-
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~ 263 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAP 263 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCC
Confidence 34556689999999999999999999999999996 999888777777776655456677774 88864 5667777533
No 173
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.37 E-value=1.9e-07 Score=97.48 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=84.8
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCC
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLT 123 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lT 123 (612)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a------~------~g----------~~Vl~fSl------Ems 85 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL------N------DD----------RGVAVFSL------EMS 85 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH------H------TT----------CEEEEEES------SSC
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH------H------cC----------CeEEEEeC------CCC
Confidence 45777777799999999999999999999888876322 0 11 12334321 122
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy12625 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203 (612)
Q Consensus 124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 203 (612)
..+. ..++......+++.+..+ +.||.+|++|++.|...+.++++++.|+|...
T Consensus 86 ~~ql------------------~~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s----- 139 (338)
T 4a1f_A 86 AEQL------------------ALRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR----- 139 (338)
T ss_dssp HHHH------------------HHHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----
T ss_pred HHHH------------------HHHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----
Confidence 2221 122222222223322222 57999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHh-C-CCEEEEEec
Q psy12625 204 ATNLVKLLRDMAH-Q-GTMIICTLH 226 (612)
Q Consensus 204 ~~~i~~~l~~l~~-~-g~tvi~~~H 226 (612)
..++...++++++ . |..+|++-|
T Consensus 140 i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3366777777765 4 677777744
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.34 E-value=3.2e-07 Score=96.66 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=50.6
Q ss_pred cccCCCChhhhhHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCc
Q psy12625 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLD-EPTTGLDYLNATNLVKLLRDMAHQGTMIICTL--HQPS 229 (612)
Q Consensus 164 ~~~~~LSgGerqRv~ia~aL~~~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~--H~~~ 229 (612)
.....+|+||+|++. +.+...++-++++| +|++|+|......+++.+.+... +..+|++. ||..
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 445678999998887 66666788889999 99999999998888888777653 67777777 7754
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.34 E-value=3.5e-08 Score=98.90 Aligned_cols=53 Identities=23% Similarity=0.160 Sum_probs=36.4
Q ss_pred eEEEEeE-EEEEEeeccccccccccccccceEEEEeC---CeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 20 NLLFQDI-SYSALYYDTHSYSIKSKDILKDISGVFVS---KELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 20 ~l~~~~l-s~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
.|+++|+ ++.|. +.+++|+|+|+++++ |+.++|+|++||||||+.++|++.+.
T Consensus 17 ~l~~~~~~~~~~~---------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFD---------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEec---------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6899999 88761 346799999999999 99999999999999999999998543
No 176
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.31 E-value=5.1e-08 Score=97.76 Aligned_cols=65 Identities=22% Similarity=0.211 Sum_probs=49.3
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHH---CCCCCCCCCCceeEEE--------ECCEeccc---hHhhccce
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILA---GYRRPKKTETNSGYIE--------INETRLQD---HRMLRKES 109 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~---g~~~p~~~~~~~G~I~--------~~g~~~~~---~~~~~~~i 109 (612)
.++++.+ ++|++++|+|||||||||++++|+ |+..+ ++|.+. .+|.++.+ ...+++.+
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~-----d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 89 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL-----DSGAIYRVLALAALHHQVDISTEEALVPLAAHL 89 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE-----EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTC
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC-----CCCceehHhHHHHHHcCCCcccHHHHHHHHHcC
Confidence 3555554 789999999999999999999999 88764 689998 88887633 24567789
Q ss_pred EEEccCC
Q psy12625 110 CYIMQDN 116 (612)
Q Consensus 110 ~yv~Q~~ 116 (612)
++++|++
T Consensus 90 ~~~~~~~ 96 (252)
T 4e22_A 90 DVRFVSQ 96 (252)
T ss_dssp CEEEEEE
T ss_pred CEEEecC
Confidence 9999854
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.30 E-value=1.8e-08 Score=111.87 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=36.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee-EEE-ECCEec
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG-YIE-INETRL 99 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G-~I~-~~g~~~ 99 (612)
.+++|++++|+|+||||||||+++|+|++.| .+| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~-----~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME-----MGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT-----TCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc-----cCCceEEEECCcHH
Confidence 4779999999999999999999999999875 344 674 888654
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.29 E-value=3.1e-07 Score=86.65 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=68.8
Q ss_pred cc--cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCce-e---EEEECCEeccchHhhccceEEEccCCCC
Q psy12625 45 IL--KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS-G---YIEINETRLQDHRMLRKESCYIMQDNLL 118 (612)
Q Consensus 45 iL--~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~-G---~I~~~g~~~~~~~~~~~~i~yv~Q~~~l 118 (612)
.+ +++++.+.+| +++|+||||||||||+++|.+++.+..+.... + ++..+|... .....+..+..++|++..
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~v~~~f~~~~~ 91 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKN-EPPAKYAEVAIYFNNEDR 91 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC-----CCSCEEEEEEEECTTC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeeccccc-CCCCceEEEEEEEeCCCc
Confidence 45 7899999999 99999999999999999999987642111000 0 111111110 000134568888887532
Q ss_pred C--C---CCCHHHHHHHH--HHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625 119 Q--E---LLTVEESLTVA--AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178 (612)
Q Consensus 119 ~--~---~lTv~e~l~~~--~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 178 (612)
- + .+++...+.-. ..++... +....+.+.++++.+++.... ..-++.||.+++.
T Consensus 92 ~~~~~~~~~~i~r~~~~~~~~~~~i~g---~~~~~~~~~~~l~~~~l~~~~---~~~~~qg~~~~l~ 152 (182)
T 3kta_A 92 GFPIDEDEVVIRRRVYPDGRSSYWLNG---RRATRSEILDILTAAMISPDG---YNIVLQGDITKFI 152 (182)
T ss_dssp CSSSSSSEEEEEEEECTTSCEEEEETT---EEECHHHHHHHHHHTTCCTTC---TTEECTTCTTHHH
T ss_pred ccccCCcEEEEEEEEEeCCcEEEEECC---eEcCHHHHHHHHHHcCCCCCC---CEEEEcccHHHHH
Confidence 1 1 12222111000 0001000 111245678889999986531 1347788877764
No 179
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.20 E-value=6.4e-08 Score=93.24 Aligned_cols=53 Identities=19% Similarity=0.131 Sum_probs=43.2
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE--EECCEec
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI--EINETRL 99 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I--~~~g~~~ 99 (612)
+.....+..+...++|++++|+||||||||||+++|++.+. ..|.+ .++|.++
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDNV 64 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCchh
Confidence 45556777888889999999999999999999999999875 24666 7777553
No 180
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.18 E-value=2.8e-07 Score=95.62 Aligned_cols=79 Identities=14% Similarity=0.062 Sum_probs=57.7
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hhh-----ccceEEE-c
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RML-----RKESCYI-M 113 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~-----~~~i~yv-~ 113 (612)
++++|+..++|++++|+||||+||||++..|++...+ ..|+|.+.+.++... ..+ +..+.++ +
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-----~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~ 169 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-----LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKA 169 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-----TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeC
Confidence 3689999999999999999999999999999998764 358898887775332 123 4578899 6
Q ss_pred cCCCCCCCCCHHHHHH
Q psy12625 114 QDNLLQELLTVEESLT 129 (612)
Q Consensus 114 Q~~~l~~~lTv~e~l~ 129 (612)
|.....|..++.+++.
T Consensus 170 ~~~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 170 NKLNADPASVVFDAIK 185 (320)
T ss_dssp SSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 6654444334444443
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.16 E-value=8.2e-07 Score=101.16 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=78.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCCCCCCCCHHHH
Q psy12625 50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNLLQELLTVEES 127 (612)
Q Consensus 50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~ 127 (612)
|+.+++|+.++|+|++|+|||||++.|++...+ ....|+| .+|..+.+. ...++.+++.+|...+... ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~---~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA---KERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS---SSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE-
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC---CCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE-
Confidence 346788999999999999999999999976543 1245777 566554332 2345566666665433221 1000
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh-hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy12625 128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK-KRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206 (612)
Q Consensus 128 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer-qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~ 206 (612)
...|+... ++ ........-..+..++++| |+.|+|+.+.
T Consensus 77 --------------------------------nliDTpG~-----~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~-- 116 (665)
T 2dy1_A 77 --------------------------------FLLDAPGY-----GDFVGEIRGALEAADAALVAVS-AEAGVQVGTE-- 116 (665)
T ss_dssp --------------------------------EEEECCCS-----GGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHH--
T ss_pred --------------------------------EEEeCCCc-----cchHHHHHHHHhhcCcEEEEEc-CCcccchhHH--
Confidence 11121100 00 0112222235678899999 9999998876
Q ss_pred HHHHHHHHHhCCCEEEEEecCCc
Q psy12625 207 LVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 207 i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
+.++.+.+.+..+|++.|..+
T Consensus 117 --~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 --RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp --HHHHHHHHTTCCEEEEEECGG
T ss_pred --HHHHHHHHccCCEEEEecCCc
Confidence 333444456788888888865
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.16 E-value=2.3e-07 Score=89.49 Aligned_cols=127 Identities=13% Similarity=0.183 Sum_probs=70.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG 137 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~ 137 (612)
+++|+|||||||||+.+.|+++ |...+++.+ ..+... + +
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l----------g~~~id~d~-----~~~~~~----~-----~----------------- 42 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL----------GVPLVDADV-----VAREVV----A-----K----------------- 42 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT----------TCCEEEHHH-----HHHHTT----C-----S-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC----------CCcccchHH-----HHHHHc----c-----C-----------------
Confidence 6899999999999999999983 222232211 111100 0 0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy12625 138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217 (612)
Q Consensus 138 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 217 (612)
. ...+.++.+.+|.... .+.|+.+|..++.....+|+.+..+ ++.++|.....+.+.+++. .
T Consensus 43 -~------~~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~ 104 (206)
T 1jjv_A 43 -D------SPLLSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--T 104 (206)
T ss_dssp -S------CHHHHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--C
T ss_pred -C------hHHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--C
Confidence 0 0123445555664322 3678999999999888888654333 3355666655555544332 3
Q ss_pred CCEEEEEecCCchH-HHhcccceeeec
Q psy12625 218 GTMIICTLHQPSAS-LLNMADYLYVLT 243 (612)
Q Consensus 218 g~tvi~~~H~~~~~-i~~~~D~v~~L~ 243 (612)
+.++|+.+|..... ....||.+++++
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 55788888875431 245567666653
No 183
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.11 E-value=4.3e-07 Score=86.38 Aligned_cols=27 Identities=41% Similarity=0.496 Sum_probs=24.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCCCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYRRP 82 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p 82 (612)
|++++|+||||||||||+++|+|+.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998763
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.10 E-value=1.9e-06 Score=93.37 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=63.8
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee-ecCCeEEEecCccC--hhhH-
Q psy12625 185 SNPSIIFLDEPTTGLDY-LNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV-LTEGYCTYQGTVPG--LVPY- 259 (612)
Q Consensus 185 ~~p~illlDEPtsgLD~-~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~~G~~~~--~~~~- 259 (612)
.+|++|++||+..-.+. .++..+.+.+..+.+.|+.||+++|.+..++..+.+++.- +..|.++..++++. ....
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 48999999999887764 6788899999998888899999999865443334455544 56677777777653 2222
Q ss_pred ---HhhcCCCCCCCCCchhHHHHhc
Q psy12625 260 ---LSDFGYQCPSNYNPADYVIEVS 281 (612)
Q Consensus 260 ---f~~~g~~~p~~~~~ad~~~~~~ 281 (612)
.+..|...++ +..+++.+..
T Consensus 273 ~~~~~~~~~~i~~--e~l~~la~~~ 295 (440)
T 2z4s_A 273 RKMLEIEHGELPE--EVLNFVAENV 295 (440)
T ss_dssp HHHHHHHTCCCCT--THHHHHHHHC
T ss_pred HHHHHHcCCCCCH--HHHHHHHHhc
Confidence 3344554443 3455555443
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.10 E-value=2.6e-06 Score=88.14 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=82.7
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCC
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLT 123 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lT 123 (612)
.-|+++.+-+++|+++.|.|++|+|||||+.-++...- ..| ..+.|+.=+ ++
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a------~~g----------------~~vl~~slE------~s 107 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS------DND----------------DVVNLHSLE------MG 107 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH------TTT----------------CEEEEEESS------SC
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH------HcC----------------CeEEEEECC------CC
Confidence 45777777799999999999999999999887764211 001 123443321 22
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy12625 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203 (612)
Q Consensus 124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 203 (612)
..+.. +++......+++.+..+.. ..||.+|++|+..|...+.++++++.|+|...
T Consensus 108 ~~~l~------------------~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 108 KKENI------------------KRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp HHHHH------------------HHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred HHHHH------------------HHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 22221 1222222222222222111 23899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHh-CCCE--EEEEec
Q psy12625 204 ATNLVKLLRDMAH-QGTM--IICTLH 226 (612)
Q Consensus 204 ~~~i~~~l~~l~~-~g~t--vi~~~H 226 (612)
..++.+.++++.+ .|.. +|++-|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3456677777765 4666 777654
No 186
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=1.3e-06 Score=84.00 Aligned_cols=40 Identities=18% Similarity=-0.021 Sum_probs=24.7
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+...+++|||+++++|++++|+||+||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999754
No 187
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.08 E-value=6.3e-08 Score=100.41 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=35.9
Q ss_pred cccccccceEEEEeCCe------EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 41 KSKDILKDISGVFVSKE------LSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge------~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+.++.|++++..+.+++ +++|+||||||||||+++|++++.
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45667888888887776 999999999999999999999876
No 188
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.05 E-value=7.7e-06 Score=86.07 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=36.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q psy12625 185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH---QGTMIICTLHQPS 229 (612)
Q Consensus 185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~---~g~tvi~~~H~~~ 229 (612)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 5788999999874
No 189
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.03 E-value=2.1e-06 Score=82.28 Aligned_cols=31 Identities=26% Similarity=0.206 Sum_probs=27.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCCC
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRRP 82 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p 82 (612)
++++|++++|+||||||||||+++|+++..|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998854
No 190
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.99 E-value=3.5e-07 Score=85.73 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=31.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.+|++++|+|||||||||+++.|++.. |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 468999999999999999999999853 5677777554
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.96 E-value=3.3e-05 Score=78.51 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=42.0
Q ss_pred hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---hHHH
Q psy12625 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYL----------NATNLVKLLRDMAH----QGTMIICTLHQPS---ASLL 233 (612)
Q Consensus 171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tvi~~~H~~~---~~i~ 233 (612)
++++.|..++.+...+|.++++||+.+-++.. ....++..+..... .+..||.+++++. ..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 46666777777778899999999998776532 22334444443321 2356777888753 2334
Q ss_pred hccccee
Q psy12625 234 NMADYLY 240 (612)
Q Consensus 234 ~~~D~v~ 240 (612)
+.||+.+
T Consensus 178 ~R~~~~i 184 (297)
T 3b9p_A 178 RRFTKRV 184 (297)
T ss_dssp HHCCEEE
T ss_pred hhCCeEE
Confidence 4455443
No 192
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=2.9e-06 Score=80.16 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=30.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~ 95 (612)
.+|++++|+||||||||||++.|++..++ ...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~----~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD----RFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT----TEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc----cEEEeeecc
Confidence 36899999999999999999999998652 245555443
No 193
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.93 E-value=2.8e-05 Score=81.40 Aligned_cols=139 Identities=13% Similarity=0.173 Sum_probs=74.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHCCC-CCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHH
Q psy12625 51 GVFVSKELSVILGPSGSGKTKLLDILAGYR-RPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLT 129 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~-~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 129 (612)
+-+++|+++.|.||+|+|||||+..++... .|....... ..+.|+.-+..+ ...+-..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~-----------------~~vlyi~~E~~~----~~~~l~~ 175 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPG-----------------GKIIFIDTENTF----RPDRLRD 175 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCC-----------------CEEEEEESSSCC----CHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCC-----------------CeEEEEECCCCC----CHHHHHH
Confidence 468999999999999999999999888742 211000001 123344332211 1111111
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh-hhHHHHHHHHh----hCCCEEEEeCCCCCCCHH--
Q psy12625 130 VAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ-KKRLSIALELL----SNPSIIFLDEPTTGLDYL-- 202 (612)
Q Consensus 130 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~----~~p~illlDEPtsgLD~~-- 202 (612)
....+. ... +++++.+-+. ...++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 176 ~~~~~g----~~~-------~~~l~~l~~~-------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 176 IADRFN----VDH-------DAVLDNVLYA-------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp HHHHTT----CCH-------HHHHHTEEEE-------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred HHHHcC----CCH-------HHHHhceeEe-------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 111111 111 1223322111 1123332 24455556665 569999999999866432
Q ss_pred ----------HHHHHHHHHHHHHh-CCCEEEEEecCC
Q psy12625 203 ----------NATNLVKLLRDMAH-QGTMIICTLHQP 228 (612)
Q Consensus 203 ----------~~~~i~~~l~~l~~-~g~tvi~~~H~~ 228 (612)
...+++..|+++++ .+.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 13456666777766 588888887764
No 194
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.85 E-value=3.8e-06 Score=82.69 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=34.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 51 GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
.+.++|++++|.|+||||||||+++|+|+ .|+|.+++++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence 34579999999999999999999999996 26788888763
No 195
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.85 E-value=3.6e-05 Score=80.89 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=40.6
Q ss_pred CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q psy12625 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMIICTLH 226 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H 226 (612)
+-++.++++..+++..+.+|+++++.-..+..|... ....++++++...| .+|++.+.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 356788999999999999999887774334455443 45566777766555 46666654
No 196
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.83 E-value=7.9e-06 Score=79.08 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=27.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRRP 82 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p 82 (612)
++|++++|+||||||||||++.|++..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998764
No 197
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.77 E-value=2.7e-05 Score=79.92 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=47.8
Q ss_pred CChhhhhHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCchHHHhcccceee
Q psy12625 169 LSGGQKKRLSIALELL--SNPSIIFLDEPTTGLDYLN-ATNLVKLLRDMAHQ-GT--MIICTLHQPSASLLNMADYLYV 241 (612)
Q Consensus 169 LSgGerqRv~ia~aL~--~~p~illlDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tvi~~~H~~~~~i~~~~D~v~~ 241 (612)
+|+|++ .+++.+. ..|.++++ +.+|... +..+.+.++++++. |. .+.++.|+-. .+..++|.+.-
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~~ 171 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVRK 171 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHHT
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHHH
Confidence 888886 4566666 68999998 7899876 67788888888763 43 5667777754 57778887763
No 198
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.77 E-value=5.4e-05 Score=78.49 Aligned_cols=139 Identities=20% Similarity=0.245 Sum_probs=74.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHCCC-CCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHH
Q psy12625 51 GVFVSKELSVILGPSGSGKTKLLDILAGYR-RPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLT 129 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~-~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 129 (612)
+-+++|+++.|.||+|+|||||+..++... .+. ..| | ....+.|+.-+..+ ...+-..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~----~~g-----g--------~~~~vlyi~~e~~~----~~~~l~~ 160 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP----EKG-----G--------LSGKAVYIDTEGTF----RWERIEN 160 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG----GGT-----C--------CSCEEEEEESSSCC----CHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc----ccC-----C--------CCCeEEEEECCCCC----CHHHHHH
Confidence 568999999999999999999998887642 210 000 0 01123344332211 1111111
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChh-hhhHHHHHHHHh---hCCCEEEEeCCCCCCCH----
Q psy12625 130 VAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG-QKKRLSIALELL---SNPSIIFLDEPTTGLDY---- 201 (612)
Q Consensus 130 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG-erqRv~ia~aL~---~~p~illlDEPtsgLD~---- 201 (612)
....+. ... +++++.+-+. ...++. +.+.+..++.++ .+|+++++|+.++-.+.
T Consensus 161 ~~~~~g----~~~-------~~~~~~l~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 161 MAKALG----LDI-------DNVMNNIYYI-------RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp HHHHTT----CCH-------HHHHHTEEEE-------ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred HHHHhC----CCH-------HHHhccEEEE-------eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 111111 111 1122211111 112222 235677777777 57999999999976532
Q ss_pred ----HH----HHHHHHHHHHHHh-CCCEEEEEecCC
Q psy12625 202 ----LN----ATNLVKLLRDMAH-QGTMIICTLHQP 228 (612)
Q Consensus 202 ----~~----~~~i~~~l~~l~~-~g~tvi~~~H~~ 228 (612)
.. ..+++..|+++++ .+.+||++.|-.
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 11 2455666666665 588988887753
No 199
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.67 E-value=5.4e-06 Score=79.74 Aligned_cols=41 Identities=24% Similarity=0.135 Sum_probs=33.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
.++|++++|+|+||||||||++.|++.+++ ..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~-----~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE-----QGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh-----cCCeEEEeccC
Confidence 578999999999999999999999998753 34677665544
No 200
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.67 E-value=2.2e-05 Score=75.47 Aligned_cols=30 Identities=27% Similarity=0.071 Sum_probs=27.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 51 GVFVSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++++|++++|+|+||||||||++.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999965
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.66 E-value=8.1e-05 Score=80.03 Aligned_cols=125 Identities=10% Similarity=0.145 Sum_probs=69.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL 134 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l 134 (612)
++.+++++||+||||||++..|++.+.+ ..++|.+-+.+.... ...|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~-----~G~kVllv~~D~~r~--------------------~a~eqL------ 144 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK-----RGYKVGLVAADVYRP--------------------AAYDQL------ 144 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH-----TTCCEEEEEECCSCH--------------------HHHHHH------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEEecCccch--------------------hHHHHH------
Confidence 5899999999999999999999987653 234454433321100 011111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q psy12625 135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT-TG--LDYLNATNLVKLL 211 (612)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPt-sg--LD~~~~~~i~~~l 211 (612)
...-+..|+.-..... ...--+--+-+++.+...+++++|+|+|- .+ .|+....++.+++
T Consensus 145 ---------------~~~~~~~gv~~~~~~~--~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 145 ---------------LQLGNQIGVQVYGEPN--NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp ---------------HHHHHTTTCCEECCTT--CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred ---------------HHHHHhcCCceeeccc--cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 1222233332211100 00111111224555555689999999997 34 7887777777766
Q ss_pred HHHHhCCCEEEEEecC
Q psy12625 212 RDMAHQGTMIICTLHQ 227 (612)
Q Consensus 212 ~~l~~~g~tvi~~~H~ 227 (612)
+.+......+++..|.
T Consensus 208 ~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 208 DVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHCCSEEEEEEEGGG
T ss_pred HhhCCcceEEEEeCcc
Confidence 6554444455555554
No 202
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.61 E-value=3.5e-06 Score=82.13 Aligned_cols=59 Identities=22% Similarity=0.169 Sum_probs=42.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE--------CCEeccch---HhhccceEEEccCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--------NETRLQDH---RMLRKESCYIMQDN 116 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~--------~g~~~~~~---~~~~~~i~yv~Q~~ 116 (612)
+.+++|+|||||||||+.+.|++.+.. ...++|++.. +|.++.+. ..+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~--~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQW--HLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTC--EEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC--CcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 568999999999999999999986521 0125687776 66654321 34567788888864
No 203
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.60 E-value=7e-05 Score=76.68 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=26.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
.++++..+.|.||+|+|||||+++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 467889999999999999999999998653
No 204
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.60 E-value=1.3e-05 Score=83.92 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999998654
No 205
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.59 E-value=3.5e-05 Score=70.63 Aligned_cols=31 Identities=35% Similarity=0.564 Sum_probs=25.7
Q ss_pred cceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 47 KDISGVFVSKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
++.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666665 999999999999999999873
No 206
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.57 E-value=2.3e-05 Score=75.31 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=26.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998764
No 207
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.57 E-value=2.4e-05 Score=72.72 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999999999764
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.54 E-value=3.7e-06 Score=87.64 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=36.7
Q ss_pred cccccccceEEEEeCCeE--EEEECCCCCcHHHHHHHHHCCCC
Q psy12625 41 KSKDILKDISGVFVSKEL--SVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+...+++.++..++.|++ +.+.||+|+||||+++++++.+.
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 456688999999999999 99999999999999999999764
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.48 E-value=6.7e-05 Score=87.27 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=28.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
.+++|+.++|.||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999865
No 210
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.46 E-value=0.00023 Score=73.36 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=35.2
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 184 LSNPSIIFLDEPTT-GLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 184 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
..+|++|++||+.. .-|...+..+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999865 23447788889999888777777777777654
No 211
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.42 E-value=2.9e-05 Score=76.46 Aligned_cols=67 Identities=7% Similarity=-0.034 Sum_probs=39.9
Q ss_pred ChhhhhHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccc
Q psy12625 170 SGGQKKRLSIALELLSNPSIIFLDEPTT-GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADY 238 (612)
Q Consensus 170 SgGerqRv~ia~aL~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~ 238 (612)
+.|.-.+. ....+.+-+++++||.-. ++|.......++.+.+...+-++++++.--+...+.++++.
T Consensus 162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 44554444 233578999999999976 68877765555555444333345655544444445555543
No 212
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.37 E-value=0.00016 Score=67.68 Aligned_cols=70 Identities=3% Similarity=0.050 Sum_probs=33.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE---EEecCccChh
Q psy12625 185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC---TYQGTVPGLV 257 (612)
Q Consensus 185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i---v~~G~~~~~~ 257 (612)
.+++++++ .+-.|......+.+..+++++ .|..++.+++.....+.++++.+.-.-+++. .|.+..+++.
T Consensus 111 ~~~piilv---~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 184 (188)
T 2wjg_A 111 MGANLLLA---LNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKTAEIKYPNFEPYI 184 (188)
T ss_dssp TTCCEEEE---EECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC--------------
T ss_pred cCCCEEEE---EEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 45566655 345555444333333445544 3566666666555467778887766655554 5555555443
No 213
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.36 E-value=0.0034 Score=65.77 Aligned_cols=35 Identities=29% Similarity=0.257 Sum_probs=28.0
Q ss_pred cccceE--EEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 45 ILKDIS--GVFVSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 45 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-|+.+- +=+++|+++.|.||+|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 35899999999999999999998777653
No 214
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.35 E-value=2.3e-05 Score=87.13 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=41.5
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
...+++++++.+ +|+.++|+||||+|||||+++|++...+ ..|+|.++|..
T Consensus 95 ~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~-----~~~~i~~~~~~ 145 (543)
T 3m6a_A 95 EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR-----KFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC-----EEEEECCCC--
T ss_pred HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC-----CeEEEEecccc
Confidence 345678888888 8999999999999999999999998764 46888777643
No 215
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.35 E-value=1.1e-05 Score=84.49 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=42.4
Q ss_pred cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
+.+.+++++++..++|.+++|+|++|+|||||++.|++...+ ..|++.+-+.+
T Consensus 41 ~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~-----~~~~v~v~~~d 93 (341)
T 2p67_A 41 LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR-----EGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH-----TTCCEEEEEEC
T ss_pred HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh-----cCCeEEEEeec
Confidence 456788999999999999999999999999999999997653 23455544433
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.32 E-value=0.0005 Score=74.37 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=78.3
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCC
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLT 123 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lT 123 (612)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .. | ..+.|+.=+ ++
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~-----~~------g----------~~vl~~slE------~~ 240 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL-----KE------G----------VGVGIYSLE------MP 240 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH-----TT------C----------CCEEEEESS------SC
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----hC------C----------CeEEEEECC------CC
Confidence 356777767999999999999999999998887763220 00 1 123443321 22
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy12625 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203 (612)
Q Consensus 124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 203 (612)
..+ ...+... ...|++.. +-.-+.|+..+.+|+.-|...+.+.++.+.|+|.. +.
T Consensus 241 ~~~------------------l~~R~~~--~~~~i~~~-~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~-- 295 (444)
T 2q6t_A 241 AAQ------------------LTLRMMC--SEARIDMN-RVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL-- 295 (444)
T ss_dssp HHH------------------HHHHHHH--HHTTCCTT-TCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH--
T ss_pred HHH------------------HHHHHHH--HHcCCCHH-HHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH--
Confidence 111 1111111 12233211 11125699999999999988888889998887643 33
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEe
Q psy12625 204 ATNLVKLLRDMAH-QGTMIICTL 225 (612)
Q Consensus 204 ~~~i~~~l~~l~~-~g~tvi~~~ 225 (612)
.++...++++.+ .|..+|++-
T Consensus 296 -~~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 296 -MEVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp -HHHHHHHHHHHHHSCCCEEEEE
T ss_pred -HHHHHHHHHHHHHcCCCEEEEc
Confidence 345566666654 566666663
No 217
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.29 E-value=5.6e-05 Score=72.20 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999997543
No 218
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.26 E-value=0.00035 Score=64.87 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999999964
No 219
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.25 E-value=0.0012 Score=64.80 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=29.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecC
Q psy12625 185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH--QGTMIICTLHQ 227 (612)
Q Consensus 185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~--~g~tvi~~~H~ 227 (612)
.+|+++++..+.+.++......+..+++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888888666555555444322 23577787773
No 220
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.25 E-value=2.4e-05 Score=82.20 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=42.1
Q ss_pred eEEEEeEEEEEEeecccccccccccccc--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 20 NLLFQDISYSALYYDTHSYSIKSKDILK--------------DISGVFVSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+.|+||++.|+ .++..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP---------~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHA---------NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESC---------CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCC---------CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345566665552 3456788 899999999999999999999999999999864
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.24 E-value=0.00039 Score=70.77 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
..+.|.||+|+|||||.++|++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 6899999999999999999999764
No 222
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.23 E-value=0.00017 Score=69.54 Aligned_cols=31 Identities=35% Similarity=0.564 Sum_probs=25.5
Q ss_pred cceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 47 KDISGVFVSKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
++.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3456666665 999999999999999998863
No 223
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.22 E-value=0.00023 Score=76.84 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=40.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC----CC---CCCCceeEEEECCEecc--chHhhccceEEEccCCCCCCCCCHHHHH
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRR----PK---KTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLTVEESL 128 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~----p~---~~~~~~G~I~~~g~~~~--~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 128 (612)
.++|+|+||+|||||+|.|+|... +. ......|.+.++|+++. +....++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 789999999999999999999753 10 01135799999998642 2222333444544544444444444554
Q ss_pred HH
Q psy12625 129 TV 130 (612)
Q Consensus 129 ~~ 130 (612)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 224
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.20 E-value=0.00041 Score=69.80 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=24.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+.++.-+.|.||+|+|||||+++++....
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35667799999999999999999998643
No 225
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.20 E-value=0.00035 Score=68.40 Aligned_cols=53 Identities=26% Similarity=0.336 Sum_probs=43.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhcccceeeec
Q psy12625 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH---------QPSASLLNMADYLYVLT 243 (612)
Q Consensus 186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 243 (612)
+|+++++||--. |+. .+++.++.+++.|..||++-| .++..+..++|+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355666777778999999999 66678889999999886
No 226
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.18 E-value=0.00016 Score=71.03 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=27.2
Q ss_pred cccceEEEEe---CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 45 ILKDISGVFV---SKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 45 iL~~vs~~i~---~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
-|.++|+++. +|.+++|.||+||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677888777 999999999999999999999999775
No 227
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.17 E-value=0.0012 Score=71.51 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=28.4
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
-|+.+.+=+++|+++.|.|++|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4666655689999999999999999999766654
No 228
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.11 E-value=0.00032 Score=68.10 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=31.2
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q psy12625 185 SNPSIIFLDEPTTGL-DYLNATNLVKLLRDMAHQGTM-IICTLHQPS 229 (612)
Q Consensus 185 ~~p~illlDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-vi~~~H~~~ 229 (612)
.+|.++++||.-.-- +......+.+.+....+.+.. +|++++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 578999999965432 233377788888887776654 777777543
No 229
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.08 E-value=9.7e-05 Score=77.42 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=32.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
+++.+++|+|++|||||||+|.|+|...+ ..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~-----~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE-----RGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH-----TTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh-----cCCeEEEEeec
Confidence 46889999999999999999999997653 34666665544
No 230
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.08 E-value=0.00025 Score=66.34 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=25.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
++|++++|+|++||||||+.+.|++.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999764
No 231
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.07 E-value=1.6e-05 Score=83.82 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=34.5
Q ss_pred eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
..+.++|++..+ +++.+++++++.| +|+|+||+|||||++.|.|...
T Consensus 16 ~~v~~~~l~~~~----------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 16 GYVGFANLPNQV----------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp -----CCHHHHH----------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred ceEEeccchHHh----------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 346666665443 5567899999887 9999999999999999988644
No 232
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.01 E-value=0.00066 Score=64.03 Aligned_cols=52 Identities=27% Similarity=0.318 Sum_probs=27.7
Q ss_pred ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC----CCCCCCceeEEEECCE
Q psy12625 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR----PKKTETNSGYIEINET 97 (612)
Q Consensus 44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~----p~~~~~~~G~I~~~g~ 97 (612)
.+++++|+..++. .++++|++|+|||||++.+.+-.. |+. ....+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~-~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTW-HPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCC-SCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCC-CCCeEEEEECCE
Confidence 4789999998887 568999999999999999997422 111 123556666553
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.98 E-value=0.0003 Score=67.43 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=25.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
..+|.+++|+||||||||||.+.|+...+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999999988653
No 234
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.98 E-value=0.0019 Score=66.40 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=27.4
Q ss_pred ccceE-EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 46 LKDIS-GVFVSKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 46 L~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44433 5689999999999999999999887774
No 235
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.93 E-value=0.00075 Score=71.15 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=27.0
Q ss_pred ccceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q psy12625 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILA 77 (612)
Q Consensus 46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~ 77 (612)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 36677778775 99999999999999999986
No 236
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.93 E-value=0.00034 Score=65.98 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=26.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 48 DISGVFVSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999875
No 237
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.91 E-value=0.0002 Score=69.06 Aligned_cols=41 Identities=17% Similarity=0.014 Sum_probs=33.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee--EEEECCE
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG--YIEINET 97 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G--~I~~~g~ 97 (612)
.+++|.+++|.|++||||||+.+.|++.+.| ..| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~-----~~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR-----DRRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH-----HHCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-----ccCCcEEEECCh
Confidence 3578999999999999999999999997653 346 6777653
No 238
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.90 E-value=0.0036 Score=65.51 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999998754
No 239
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.85 E-value=0.00028 Score=67.19 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=31.7
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
..+++++|+..++++ ++|+|++|+|||||++.+.+-
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 468999999888885 689999999999999999874
No 240
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.83 E-value=0.0011 Score=69.21 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998754
No 241
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.82 E-value=0.0023 Score=63.21 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
++..-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998753
No 242
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.81 E-value=0.0017 Score=59.47 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
.++|+|+||+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999643
No 243
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.78 E-value=0.00049 Score=65.62 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHC
Q psy12625 58 LSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g 78 (612)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 244
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.76 E-value=0.011 Score=61.01 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
..+..-+.|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566778899999999999999999864
No 245
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.70 E-value=0.019 Score=60.30 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=24.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 589999999999999999999876654
No 246
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.67 E-value=0.011 Score=64.85 Aligned_cols=34 Identities=15% Similarity=-0.011 Sum_probs=27.6
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
-|+.+.+-+++|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4555555589999999999999999999766654
No 247
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.66 E-value=0.00019 Score=74.92 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=34.6
Q ss_pred cccccceEEEEeCCeE--EEEECCCCCcHHHHHHHHHCCCC
Q psy12625 43 KDILKDISGVFVSKEL--SVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
..+++.++..+++|+. ++|+|++||||||+.++|++.+.
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4578889888999998 99999999999999999998653
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.65 E-value=0.00039 Score=74.62 Aligned_cols=47 Identities=23% Similarity=0.170 Sum_probs=39.4
Q ss_pred cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625 47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100 (612)
Q Consensus 47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~ 100 (612)
+++++. +|++++++|+|||||||++..|++.+.+ ..|+|.+.+.++.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~-----~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-----KGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEeecccc
Confidence 577777 8999999999999999999999998874 3577888776643
No 249
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.61 E-value=0.0008 Score=63.24 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=29.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
.+++|+|+||||||||++.|.+.+++. ...-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~--g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR--GIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc--CCceeEEeeCCCc
Confidence 588999999999999999999875421 1234777776543
No 250
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.59 E-value=0.00097 Score=62.65 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=25.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
.+|.++.|.|++||||||+.+.|++.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999998765
No 251
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.59 E-value=0.0011 Score=62.10 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
.+|.+++|.|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 252
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.58 E-value=0.00047 Score=68.62 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=35.3
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~ 98 (612)
++++.+ ..+++.++.|+|+|||||||+.+.|+.... .|.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-------TCCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-------CCcEEEecHH
Confidence 455555 677889999999999999999999998654 1446666543
No 253
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.55 E-value=0.00085 Score=63.97 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998753
No 254
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.53 E-value=0.0083 Score=59.27 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=34.8
Q ss_pred hhhhhHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCC
Q psy12625 171 GGQKKRLSIALELL---SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ---GTMIICTLHQP 228 (612)
Q Consensus 171 gGerqRv~ia~aL~---~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~---g~tvi~~~H~~ 228 (612)
.|++.+-.+.+++. .+++++++--+.+.++. ....+++.++++... +.++|+++|-.
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~ 149 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKE 149 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchH
Confidence 34555556666653 77887766555555554 345566667665422 67888888853
No 255
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.52 E-value=0.0016 Score=66.76 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
+.-+.|.||+|+|||+|+++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999874
No 256
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.47 E-value=0.0015 Score=60.58 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998654
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.46 E-value=0.0014 Score=60.21 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 258
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.37 E-value=0.0011 Score=65.68 Aligned_cols=35 Identities=29% Similarity=0.568 Sum_probs=24.8
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
.++++++..++| +.|.||||+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555555555 88999999999999999998654
No 259
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.37 E-value=0.0013 Score=69.66 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=33.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC-----CCC-CCCceeEEEECCE
Q psy12625 50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRR-----PKK-TETNSGYIEINET 97 (612)
Q Consensus 50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~-----p~~-~~~~~G~I~~~g~ 97 (612)
-..+..|..++|+|+||+|||||+|.|+|... |.. ..+..|.+.++|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 33567888999999999999999999999721 100 1235788877664
No 260
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.0011 Score=68.50 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=31.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
++.++++|| ...|++.....+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 677999999 788999888888888876543 345666666654
No 261
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.33 E-value=0.0017 Score=63.74 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=24.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999999974
No 262
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.29 E-value=0.0018 Score=60.47 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 263
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.27 E-value=0.0022 Score=60.00 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998743
No 264
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.27 E-value=0.00034 Score=71.58 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=37.0
Q ss_pred cc-eEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625 47 KD-ISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99 (612)
Q Consensus 47 ~~-vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~ 99 (612)
++ ++++.+ |++++++|+||+||||++..|++...+ ..|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~-----~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK-----KGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH-----TTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEecCC
Confidence 45 777765 999999999999999999999998763 246677665553
No 265
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.25 E-value=0.016 Score=59.33 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=22.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHH-HHHHHCC
Q psy12625 51 GVFVSKELSVILGPSGSGKTKL-LDILAGY 79 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTL-L~~l~g~ 79 (612)
+=+++| ++.|.||+|+||||| |.+++..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 457899 999999999999999 5555543
No 266
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.25 E-value=0.0057 Score=58.24 Aligned_cols=53 Identities=23% Similarity=0.479 Sum_probs=41.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhcccceeeec
Q psy12625 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH---------QPSASLLNMADYLYVLT 243 (612)
Q Consensus 186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 243 (612)
+.+++++||--- +|+. .++.++++++.|..||++-+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999543 6543 36677888878999999999 55678889999998876
No 267
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.24 E-value=0.0021 Score=63.21 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999864
No 268
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.23 E-value=0.0062 Score=62.64 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 51 GVFVSKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999998874
No 269
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.22 E-value=0.0073 Score=74.59 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=26.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 49999999999999999999998887643
No 270
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.20 E-value=0.0052 Score=57.44 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999766654
No 271
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.16 E-value=0.014 Score=58.99 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+++.-+.|.||+|+|||||.+.++....
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556789999999999999999987653
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.15 E-value=0.0023 Score=63.60 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999754
No 273
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.14 E-value=0.0025 Score=59.83 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
+++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999864
No 274
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.06 E-value=0.0029 Score=60.09 Aligned_cols=23 Identities=48% Similarity=0.598 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987654
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.05 E-value=0.0031 Score=57.71 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy12625 58 LSVILGPSGSGKTKLLDIL 76 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l 76 (612)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.04 E-value=0.0033 Score=58.74 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998643
No 277
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.98 E-value=0.0038 Score=60.15 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 278
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.97 E-value=0.004 Score=59.19 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 279
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.97 E-value=0.0037 Score=59.17 Aligned_cols=26 Identities=27% Similarity=0.116 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.97 E-value=0.0032 Score=58.65 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
++..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999853
No 281
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.96 E-value=0.0036 Score=59.10 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999854
No 282
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.94 E-value=0.017 Score=60.22 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 445568899999999999999999754
No 283
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.91 E-value=0.034 Score=58.65 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
++.-+.|.||+|+|||+|.++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 46688999999999999999998754
No 284
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.90 E-value=0.089 Score=65.13 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=27.4
Q ss_pred cccceE--EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 45 ILKDIS--GVFVSKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 45 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
-|+.+- +=+++|+++.|.||+|+|||||.--++.
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 455554 3589999999999999999999766654
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.90 E-value=0.0043 Score=57.32 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g 78 (612)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 286
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.89 E-value=0.0064 Score=66.46 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=23.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455668999999999999999998753
No 287
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.86 E-value=0.0038 Score=63.32 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=28.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g 96 (612)
-..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-------~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-------GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT-------TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Confidence 34578999999999999999999987543 14466664
No 288
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.85 E-value=0.0041 Score=57.69 Aligned_cols=23 Identities=39% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998754
No 289
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.81 E-value=0.0043 Score=59.13 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.+|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 290
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.80 E-value=0.013 Score=56.69 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=43.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhcccceeeec
Q psy12625 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH---------QPSASLLNMADYLYVLT 243 (612)
Q Consensus 186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 243 (612)
+.+++++||--- +|.. .++.++++++.|+.||++-+ .+...+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6543 33777887778999999999 78888999999999886
No 291
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.75 E-value=0.0048 Score=57.91 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 36779999999999999999999864
No 292
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.73 E-value=0.0021 Score=62.75 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=31.1
Q ss_pred HHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q psy12625 179 IALELLSNPSIIFLDEPTT-GLDYLNATNLVKLLRDMAHQGTMIICTLHQ 227 (612)
Q Consensus 179 ia~aL~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 227 (612)
+..++..+|+++++||+-. ..+........+.+..+...|..++.|+|-
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nl 126 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNV 126 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEG
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccc
Confidence 4444557999999999764 233332233344444455678889999883
No 293
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.73 E-value=0.0024 Score=61.06 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998654
No 294
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.70 E-value=0.0053 Score=58.01 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999874
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.69 E-value=0.006 Score=57.05 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.68 E-value=0.005 Score=58.72 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998643
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.64 E-value=0.0052 Score=57.36 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998754
No 298
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.62 E-value=0.029 Score=54.80 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=44.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------CchHHHhcccceeeec
Q psy12625 185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQ---------PSASLLNMADYLYVLT 243 (612)
Q Consensus 185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~---------~~~~i~~~~D~v~~L~ 243 (612)
.+.+++++||----.| +.+.++.+++.|+.||++-++ +...+..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877654 666666677789999999999 8888999999999886
No 299
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.61 E-value=0.0049 Score=61.73 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999974
No 300
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.59 E-value=0.0088 Score=54.08 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
-++|+|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 368999999999999999988643
No 301
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.59 E-value=0.0058 Score=57.02 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
.+++|+|++|||||||++.|+..++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999988654
No 302
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.55 E-value=0.021 Score=51.27 Aligned_cols=42 Identities=5% Similarity=0.108 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228 (612)
Q Consensus 186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 228 (612)
+..++++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 45789999975 6788888888888877544456677777654
No 303
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.55 E-value=0.011 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 304
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.54 E-value=0.011 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 305
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.53 E-value=0.023 Score=71.19 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=48.0
Q ss_pred HHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---Hh-CCCEEEEEecCCch------
Q psy12625 176 RLSIALELL--SNPSIIFLDEPTTGLD-Y------------LNATNLVKLLRDM---AH-QGTMIICTLHQPSA------ 230 (612)
Q Consensus 176 Rv~ia~aL~--~~p~illlDEPtsgLD-~------------~~~~~i~~~l~~l---~~-~g~tvi~~~H~~~~------ 230 (612)
-+.+++.++ .+|++++.|.-++-.. + ..+..+.+.|++| ++ .+.+||++.|-...
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 345555554 4799999999876552 1 1233455666666 44 68899998774211
Q ss_pred ---------HHHhcccceeeecCCeEEEec
Q psy12625 231 ---------SLLNMADYLYVLTEGYCTYQG 251 (612)
Q Consensus 231 ---------~i~~~~D~v~~L~~G~iv~~G 251 (612)
.+.+.+|-++.|+.......|
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~~~~~g 558 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIGAVKEG 558 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEEEEEET
T ss_pred CCcCCCCcchhhhhCCEEEEEEecccccCC
Confidence 356778999988765543333
No 306
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.53 E-value=0.011 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998654
No 307
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.50 E-value=0.0086 Score=54.09 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 308
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.46 E-value=0.0078 Score=58.01 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998643
No 309
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.46 E-value=0.0054 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
+++.+++|.|++||||||+.+.|+..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 310
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.45 E-value=0.01 Score=53.72 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999865
No 311
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.40 E-value=0.01 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 312
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.39 E-value=0.008 Score=56.42 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 313
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.38 E-value=0.0058 Score=56.76 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=18.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998644
No 314
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.0072 Score=56.41 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-.++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 315
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.33 E-value=0.0076 Score=57.12 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999998853
No 316
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.32 E-value=0.0086 Score=54.56 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999864
No 317
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.016 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999853
No 318
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.32 E-value=0.011 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998754
No 319
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.29 E-value=0.015 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999754
No 320
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.28 E-value=0.0083 Score=58.19 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=21.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.++.+++|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 321
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.24 E-value=0.017 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999888653
No 322
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.21 E-value=0.012 Score=60.27 Aligned_cols=37 Identities=22% Similarity=0.078 Sum_probs=31.9
Q ss_pred ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
....+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 345788887777 8899999999999999999999874
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.21 E-value=0.011 Score=56.16 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.+-+++|.|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999864
No 324
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.20 E-value=0.011 Score=54.01 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 325
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.20 E-value=0.0097 Score=56.98 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 326
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.20 E-value=0.012 Score=53.72 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 327
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.20 E-value=0.0099 Score=53.91 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHCCC
Q psy12625 59 SVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 59 ~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
No 328
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.18 E-value=0.013 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
No 329
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.17 E-value=0.0089 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 330
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.15 E-value=0.011 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
++++|.|++||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 331
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.15 E-value=0.01 Score=59.59 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 332
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.15 E-value=0.013 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998863
No 333
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.13 E-value=0.011 Score=55.29 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998744
No 334
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.12 E-value=0.025 Score=66.15 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
..+.|.||+|+|||+|.+.|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4788999999999999999998653
No 335
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.10 E-value=0.013 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 336
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.10 E-value=0.011 Score=55.95 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999854
No 337
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.10 E-value=0.0096 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999864
No 338
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.06 E-value=0.0087 Score=55.61 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999875
No 339
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.05 E-value=0.0089 Score=57.70 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998643
No 340
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.05 E-value=0.012 Score=56.51 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999764
No 341
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.04 E-value=0.013 Score=58.35 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999875
No 342
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.03 E-value=0.013 Score=53.48 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999998853
No 343
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.02 E-value=0.013 Score=53.63 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 344
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.02 E-value=0.019 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47899999999999999999754
No 345
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.02 E-value=0.022 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 346
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.00 E-value=0.0099 Score=55.39 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999864
No 347
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.99 E-value=0.019 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 348
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.98 E-value=0.0094 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999999754
No 349
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.97 E-value=0.012 Score=54.75 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 350
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.97 E-value=0.01 Score=55.40 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-.++|+|++|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999864
No 351
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.97 E-value=0.017 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 352
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.94 E-value=0.016 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999864
No 353
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.90 E-value=0.011 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999999864
No 354
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.89 E-value=0.014 Score=57.42 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999853
No 355
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.88 E-value=0.022 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46899999999999999998754
No 356
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.86 E-value=0.017 Score=53.39 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
No 357
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.85 E-value=0.024 Score=54.24 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=29.0
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
...++..-.. ..|..++|+||+|+|||||...|+..
T Consensus 22 ~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4456665544 47889999999999999999999875
No 358
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.85 E-value=0.012 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHCCC
Q psy12625 59 SVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 59 ~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 359
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.84 E-value=0.014 Score=53.41 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 360
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.83 E-value=0.018 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999864
No 361
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.79 E-value=0.013 Score=53.16 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++++|++|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999997743
No 362
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.78 E-value=0.024 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++++|++|+|||||++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
No 363
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.78 E-value=0.019 Score=60.17 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=28.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCCC-----C-CCCCCceeEEEECC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYRR-----P-KKTETNSGYIEINE 96 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~~-----p-~~~~~~~G~I~~~g 96 (612)
|-.++|+|.+|+|||||+|.|+|-.. | ....+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998431 0 01123567777765
No 364
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.77 E-value=0.019 Score=53.46 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 365
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.75 E-value=0.02 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
-++|+|++|+|||||++.+.+...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999999987543
No 366
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.74 E-value=0.023 Score=52.69 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998854
No 367
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.73 E-value=0.014 Score=52.65 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHCC
Q psy12625 59 SVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 59 ~aI~GpsGsGKSTLL~~l~g~ 79 (612)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999764
No 368
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.72 E-value=0.015 Score=57.33 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
No 369
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.72 E-value=0.017 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 370
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.70 E-value=0.016 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 371
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.70 E-value=0.24 Score=53.14 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987654
No 372
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.70 E-value=0.026 Score=58.41 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
++.++.|+||+|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567999999999999999999998653
No 373
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.69 E-value=0.029 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 374
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.69 E-value=0.0085 Score=63.34 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625 186 NPSIIFLDEPTTGLD---YLNATNLVKLLRDMAHQGTMIICTLHQPSA 230 (612)
Q Consensus 186 ~p~illlDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 230 (612)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.+.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 588999999988774 677888888888888889999999999864
No 375
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.68 E-value=0.016 Score=59.11 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 58999999999999999999964
No 376
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.68 E-value=0.021 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998864
No 377
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.67 E-value=0.024 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999854
No 378
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.67 E-value=0.0092 Score=54.98 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
.--++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999999875
No 379
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.62 E-value=0.025 Score=53.25 Aligned_cols=25 Identities=32% Similarity=0.231 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
=-++|+|++|+|||||++.+.+...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC
Confidence 3578999999999999999998653
No 380
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.62 E-value=0.028 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
-++|+|++|+|||||++.+.+...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998643
No 381
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.60 E-value=0.015 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 382
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.021 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998864
No 383
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.59 E-value=0.023 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999854
No 384
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.58 E-value=0.019 Score=52.74 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999998754
No 385
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.58 E-value=0.023 Score=53.39 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998864
No 386
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.57 E-value=0.015 Score=57.84 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|||||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999963
No 387
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.57 E-value=0.018 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.270 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
-++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 468999999999999999998754
No 388
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.57 E-value=0.014 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998854
No 389
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.54 E-value=0.023 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998864
No 390
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.54 E-value=0.019 Score=55.66 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
No 391
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.52 E-value=0.018 Score=58.79 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
No 392
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.50 E-value=0.02 Score=55.59 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 53 FVSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.++..++.|+||+||||+|..+.|+-.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456678999999999999999999864
No 393
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.49 E-value=0.03 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++++|++|+|||||++.+.+-.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 394
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.49 E-value=0.014 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999864
No 395
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.49 E-value=0.018 Score=53.30 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+.=-++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44468999999999999999999854
No 396
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.46 E-value=0.016 Score=55.19 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999864
No 397
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.46 E-value=0.0099 Score=60.38 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=18.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
++-+++|.||+||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3558999999999999999999863
No 398
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.45 E-value=0.019 Score=55.31 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
|-.+.|+|++||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
No 399
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.43 E-value=0.031 Score=52.46 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 400
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.40 E-value=0.0053 Score=58.81 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=29.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7877777766666432 23567888887754
No 401
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.40 E-value=0.043 Score=51.67 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999854
No 402
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.39 E-value=0.027 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 403
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.39 E-value=0.017 Score=56.46 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=22.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 52 VFVSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+..+|.++.|.|++||||||+.+.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999987653
No 404
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.38 E-value=0.03 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+-.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998743
No 405
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.37 E-value=0.017 Score=60.77 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHCCC
Q psy12625 59 SVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 59 ~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
++|+|++|+|||||+|.|++..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999863
No 406
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.36 E-value=0.035 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998753
No 407
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.35 E-value=0.024 Score=54.74 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
-+|.+++|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
No 408
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.35 E-value=0.02 Score=56.89 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
No 409
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.048 Score=52.44 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 410
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.34 E-value=0.019 Score=57.90 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 411
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.33 E-value=0.018 Score=56.82 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 412
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.33 E-value=0.022 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 413
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.29 E-value=0.037 Score=51.52 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57899999999999999888754
No 414
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.26 E-value=0.02 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 415
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.26 E-value=0.029 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 416
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.031 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998864
No 417
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.25 E-value=0.024 Score=57.27 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g 78 (612)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 418
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.22 E-value=0.02 Score=57.44 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
No 419
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.21 E-value=0.032 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 420
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.21 E-value=0.02 Score=53.76 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999873
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.20 E-value=0.022 Score=54.62 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999863
No 422
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.17 E-value=0.026 Score=54.91 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998643
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.16 E-value=0.035 Score=52.76 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
-++|+|++|+|||||++.+.+...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999998643
No 424
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.12 E-value=0.021 Score=58.04 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
No 425
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.11 E-value=0.013 Score=56.15 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-.++|+|++|+|||||++.|.|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 367999999999999999999864
No 426
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.11 E-value=0.023 Score=54.85 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999874
No 427
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.10 E-value=0.023 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 428
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.10 E-value=0.023 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
=-++|+|++|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999964
No 429
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.09 E-value=0.021 Score=54.58 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 430
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.05 E-value=0.018 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998865
No 431
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.05 E-value=0.024 Score=52.87 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-.++|+|++|+|||||++.+.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999999854
No 432
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.02 E-value=0.025 Score=60.46 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999763
No 433
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.02 E-value=0.027 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 434
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.00 E-value=0.035 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998754
No 435
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.00 E-value=0.021 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 436
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.98 E-value=0.024 Score=52.09 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
..+..+.|.||+|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456778999999999999999987643
No 437
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.97 E-value=0.022 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999975
No 438
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.97 E-value=0.024 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 439
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.96 E-value=0.027 Score=55.34 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987654
No 440
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.95 E-value=0.032 Score=57.12 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+.+++|+||+|||||||...|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999998754
No 441
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.95 E-value=0.025 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
=-++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 367899999999999999998754
No 442
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.91 E-value=0.028 Score=58.21 Aligned_cols=24 Identities=46% Similarity=0.454 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+++|.||+|||||||.+.|+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999754
No 443
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.88 E-value=0.037 Score=52.80 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+-.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
No 444
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.87 E-value=0.14 Score=64.20 Aligned_cols=36 Identities=28% Similarity=0.234 Sum_probs=31.2
Q ss_pred cccccceE--EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 43 KDILKDIS--GVFVSKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 43 ~~iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
...|+++. +-+++|+.+.|.||+|+|||||...++-
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44678888 5799999999999999999999988763
No 445
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.86 E-value=0.038 Score=53.60 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=30.9
Q ss_pred hCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q psy12625 185 SNPSIIFLDEPTT----GLDYLNATNLVKLLRDMAH-QGTMIICTLHQP 228 (612)
Q Consensus 185 ~~p~illlDEPts----gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~ 228 (612)
.+|+++++|--+. .-|.....+++..|+.+++ .|.+++++.|..
T Consensus 134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 4788888885432 1144556677788888876 689999998864
No 446
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.84 E-value=0.032 Score=53.64 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
++.|+||+||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999864
No 447
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.057 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 448
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.77 E-value=0.025 Score=56.85 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 449
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.75 E-value=0.025 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 450
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.72 E-value=0.032 Score=54.10 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=25.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
++|.++.+-|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999998765
No 451
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.72 E-value=0.037 Score=53.87 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
.+|.++++.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987553
No 452
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.69 E-value=0.02 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=9.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 453
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.69 E-value=0.034 Score=53.74 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+|.++.+-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999988654
No 454
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.65 E-value=0.031 Score=52.43 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998644
No 455
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.64 E-value=0.067 Score=58.10 Aligned_cols=71 Identities=18% Similarity=0.322 Sum_probs=52.7
Q ss_pred cCCCChhhhhHHHHHHHHh--h---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625 166 TKHLSGGQKKRLSIALELL--S---------------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228 (612)
Q Consensus 166 ~~~LSgGerqRv~ia~aL~--~---------------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 228 (612)
.+++||||+|-.-+|.+.. . .-.++++||. +-+|.......+++++++ |.-+|+++-+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 4579999999654444332 2 1257999999 999999999999999875 6777777755
Q ss_pred chHHHhcccceeeec
Q psy12625 229 SASLLNMADYLYVLT 243 (612)
Q Consensus 229 ~~~i~~~~D~v~~L~ 243 (612)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3456678877775
No 456
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.64 E-value=0.03 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 457
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.64 E-value=0.027 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
=-++|+|++|+|||||++.+.+-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
No 458
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.63 E-value=0.036 Score=59.82 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=29.2
Q ss_pred cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+++.+ ..+-+|+..+|+||||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 55555 466789999999999999999999998753
No 459
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.63 E-value=0.036 Score=54.15 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+|.+++|-|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997653
No 460
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.58 E-value=0.033 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998753
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.56 E-value=0.026 Score=55.98 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+++.+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999987653
No 462
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.56 E-value=0.037 Score=56.99 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+++|+||+|||||||.+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999864
No 463
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.55 E-value=0.058 Score=50.31 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=27.0
Q ss_pred cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78 (612)
Q Consensus 43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g 78 (612)
+..++..-. --.|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFL-VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344555444 45788999999999999999888865
No 464
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.51 E-value=0.054 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
=-++++|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36789999999999999999864
No 465
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.50 E-value=0.044 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 466
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.46 E-value=0.034 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 467
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.40 E-value=0.056 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+-.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 468
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.39 E-value=0.02 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
No 469
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.37 E-value=0.035 Score=55.36 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 470
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.27 E-value=0.11 Score=59.89 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999864
No 471
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.16 E-value=0.051 Score=55.49 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998754
No 472
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.13 E-value=0.012 Score=58.35 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=22.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 50 SGVFVSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
+....+| +.|.||+|+|||||+++|++..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3334444 7799999999999999999753
No 473
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.08 E-value=0.041 Score=54.89 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999754
No 474
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.07 E-value=0.053 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 475
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.04 E-value=0.028 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-++++|++|+|||||++.+.+-
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999653
No 476
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.03 E-value=0.04 Score=52.77 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-.++|+|++|+|||||++-+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988643
No 477
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.02 E-value=0.021 Score=53.65 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999875
No 478
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.96 E-value=0.04 Score=52.00 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47899999999999999998753
No 479
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.85 E-value=0.13 Score=59.04 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+.+.||+|+|||+|.+.|+...
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 68899999999999999999754
No 480
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.80 E-value=0.057 Score=50.78 Aligned_cols=53 Identities=23% Similarity=0.405 Sum_probs=37.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc---------hHHHhcccceeeec
Q psy12625 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS---------ASLLNMADYLYVLT 243 (612)
Q Consensus 186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~---------~~i~~~~D~v~~L~ 243 (612)
+++++++||--- +|+ .+++.|+.++++|..|+++.++.+ ..+...+|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 366777777778999999888433 44556677776664
No 481
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.77 E-value=0.055 Score=57.29 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
..+++|+||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998754
No 482
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.74 E-value=0.044 Score=59.16 Aligned_cols=53 Identities=9% Similarity=0.094 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625 172 GQKKRLSIALELLSNPSIIFLDEPT-TGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228 (612)
Q Consensus 172 GerqRv~ia~aL~~~p~illlDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 228 (612)
.|++....+...+.+++++++.... .++.... ..+.+.++ +.++.+|++.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~ 141 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKL 141 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECc
Confidence 4666666777777788877665444 4555544 44555543 4567777776654
No 483
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.70 E-value=0.051 Score=48.67 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229 (612)
Q Consensus 186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 229 (612)
+..+|++||.- .|++..+..+.+.|... ..+..+|++++.+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 45789999984 68888888888888332 23456777777654
No 484
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.49 E-value=0.019 Score=66.72 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.0
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 49 ISGVFVSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 49 vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
.++.+.+|+.+.|.||||+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 355678999999999999999999999999754
No 485
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.39 E-value=0.066 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHCC
Q psy12625 57 ELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 57 e~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
--++|+||+||||||+.+.|+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 35799999999999999999764
No 486
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.39 E-value=0.066 Score=50.34 Aligned_cols=42 Identities=21% Similarity=0.210 Sum_probs=28.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625 185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228 (612)
Q Consensus 185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 228 (612)
.++.++++||. ..++......+.+.+.+. ..+..+|++++.+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 36889999995 456777777776666553 2345667777654
No 487
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.26 E-value=0.073 Score=57.81 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=20.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
|=.++|+|++|+|||||+|.|+|..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4448999999999999999999863
No 488
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.07 E-value=0.079 Score=52.60 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567889999999999999999875
No 489
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.90 E-value=0.11 Score=49.55 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=54.4
Q ss_pred hhHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625 174 KKRLSIALELL--SNPSIIFLDEPTT--GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245 (612)
Q Consensus 174 rqRv~ia~aL~--~~p~illlDEPts--gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 245 (612)
++.+.-++..+ .+.++++|||.+. .++.....++++.|.+ +-++..||+|.+.+..++.+.+|-|--|..-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 45666677777 5679999999976 3444445567777753 2257899999999999999999999999764
No 490
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.82 E-value=0.084 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 55 SKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
..-.++|+|++|+|||||++.|++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 491
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.79 E-value=0.091 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998876
No 492
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.78 E-value=0.089 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 56 KELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 56 Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
+-.++++|.+|+|||||+|.|.|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34689999999999999999999653
No 493
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.74 E-value=0.12 Score=53.85 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCChhhhhHHHHHHHH---hh--CCCEEEEeCCC
Q psy12625 168 HLSGGQKKRLSIALEL---LS--NPSIIFLDEPT 196 (612)
Q Consensus 168 ~LSgGerqRv~ia~aL---~~--~p~illlDEPt 196 (612)
.+|+||+||..++++| .. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 5899999999999999 77 89999999997
No 494
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.72 E-value=0.057 Score=56.15 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 495
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.70 E-value=0.076 Score=53.69 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
++...+.|.||+|+|||+|.++|+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334567788999999999999999754
No 496
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.64 E-value=0.078 Score=56.21 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEE
Q psy12625 147 SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFL 192 (612)
Q Consensus 147 ~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illl 192 (612)
+.++++++.++.... ..++|.+|.+++.-..-+...|-++++
T Consensus 180 ~~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 180 NDVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 356777777776543 347899998888777767778988887
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.62 E-value=0.086 Score=54.57 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYRR 81 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~ 81 (612)
.+|..+.|.||+|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998654
No 498
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.88 E-value=0.034 Score=52.40 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q psy12625 58 LSVILGPSGSGKTKLLDILAGY 79 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~ 79 (612)
-++|+|++|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5789999999999999988753
No 499
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.53 E-value=0.098 Score=53.51 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625 54 VSKELSVILGPSGSGKTKLLDILAGYR 80 (612)
Q Consensus 54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~ 80 (612)
.+..-+.|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 455678999999999999999998753
No 500
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.39 E-value=0.16 Score=53.40 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=31.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC------CCCCceeEEEECCEec
Q psy12625 58 LSVILGPSGSGKTKLLDILAGYRRPK------KTETNSGYIEINETRL 99 (612)
Q Consensus 58 ~~aI~GpsGsGKSTLL~~l~g~~~p~------~~~~~~G~I~~~g~~~ 99 (612)
-++|+|.+-+|||||+|.|+|-...- ...+..|.+.++|.++
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 58999999999999999999964210 1123568888888653
Done!