RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12625
(612 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 401 bits (1033), Expect = e-133
Identities = 179/586 (30%), Positives = 291/586 (49%), Gaps = 23/586 (3%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
K +LK++SGV EL ++G SG+GKT L++ LA R PK + SG + +N + D
Sbjct: 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAF-RSPKGVKG-SGSVLLNGMPI-DA 94
Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
+ +R S Y+ QD+L LTV E L AHL++ + ++K K +VD + +L + C
Sbjct: 95 KEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCA 154
Query: 163 NTLT------KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
NT K LSGG++KRL+ A ELL++P ++F DEPT+GLD A ++V++L+ +A
Sbjct: 155 NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ 214
Query: 217 QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADY 276
+G IICT+HQPS+ L + D + ++ EG Y G+ VP+ SD G+ CP NYNPAD+
Sbjct: 215 KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADF 274
Query: 277 VIEVSLEADRMFEPC--TNGKF--FNANSSHNTKTVLKTIEEKGLSSK-EFYSVLSTEIP 331
++V K A S ++ T G + S I
Sbjct: 275 YVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG 334
Query: 332 YPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLS 391
Y A +QF LLKR+ + RD L KVRL ++ +G++Y G G V N
Sbjct: 335 YNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNING 394
Query: 392 LLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVI 451
LF + F + +I + E + RE + + + AY+LA +A++P+ ++ +
Sbjct: 395 ALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPAL 454
Query: 452 YCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMIL-DVKNGVIFGPLTLLPW 510
+ Y++ F FL + + + G L+ + GP ++P+
Sbjct: 455 FTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPF 514
Query: 511 TIFSGYFVLQRDS-PDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCY----EEYCHFK 565
+F G+F + DS P FK+L LS+ ++ EG+L++ + D D ++C C
Sbjct: 515 LLFGGFF-INSDSIPVYFKWLSYLSWFRYGNEGLLINQWS-DVDNIECTSANTTGPCPSS 572
Query: 566 SPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNK 611
L+ L +N D DL L++ ++ +Y L +I R +
Sbjct: 573 GEV-ILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 212 bits (543), Expect = 1e-65
Identities = 87/231 (37%), Positives = 125/231 (54%), Gaps = 40/231 (17%)
Query: 21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR 80
L F++++ + S S K +LK++SG EL+ I+GPSG+GK+ LL+ LAG R
Sbjct: 4 LSFRNLTVTV----KSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59
Query: 81 RPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
SG + IN L RK Y+ QD++L LTV E+L AA L+
Sbjct: 60 TGLGV---SGEVLINGRPLDKRS-FRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 141 SRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
LSGG++KR+SIALEL+SNPS++FLDEPT+GLD
Sbjct: 111 ---------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
Query: 201 YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
+A ++ LLR +A G IIC++HQPS+ + + D L +L++G Y G
Sbjct: 144 SSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 220 bits (563), Expect = 2e-63
Identities = 147/502 (29%), Positives = 257/502 (51%), Gaps = 32/502 (6%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS--GYIEINE 96
I+ + IL ++G+ E+ +LGPSGSGK+ LL+ LAG + + N+ G I N
Sbjct: 77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG-----RIQGNNFTGTILANN 131
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
+ + K + ++ QD++L LTV E+L + L+L +++ K +S+ L
Sbjct: 132 RKPTKQIL--KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL 189
Query: 157 SISTCKNTLT-----KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
++ C+NT+ + +SGG++KR+SIA E+L NPS++ LDEPT+GLD A LV L
Sbjct: 190 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL 249
Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNY 271
+A +G I+ ++HQPS+ + M D + VL+EG C + G + Y G+
Sbjct: 250 GSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPM 309
Query: 272 NPADYVIEVS---LEADRMFE---PCTNGKFFNANSSHNTKTVLKTIEEKGLSS--KEFY 323
NPAD++++++ + D + E P + ++ V IE F
Sbjct: 310 NPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFV 369
Query: 324 SVLSTEIPYPAD--CLS----QFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYR 377
ST+ +D +S QF ILL+R+L + + F T +R+ + G+M+
Sbjct: 370 GSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNT-LRVFQVIAAALLAGLMW- 427
Query: 378 GIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLAT 437
D V + L LLFF ++F + + +P E I +E + ++L +Y++A
Sbjct: 428 -WHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMAR 486
Query: 438 MVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVG-MILDV 496
+V D+P++L+ I+ Y+++ EL F + LL+ + L SQG+G+ +G I+D
Sbjct: 487 IVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDA 546
Query: 497 KNGVIFGPLTLLPWTIFSGYFV 518
K +T+L + + G++V
Sbjct: 547 KKASTIVTVTMLAFVLTGGFYV 568
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
[Transport and binding proteins, Other].
Length = 1394
Score = 196 bits (499), Expect = 5e-53
Identities = 151/639 (23%), Positives = 261/639 (40%), Gaps = 94/639 (14%)
Query: 40 IKSKD--ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
IK + IL ++ G L+ ++G SG+GKT LL++LA +G I +
Sbjct: 771 IKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE-------RVTTGVITGGD- 822
Query: 98 RLQDHRML----RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
RL + R L ++ Y+ Q +L TV ESL +A+L+ S+ K V+ +
Sbjct: 823 RLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVI 882
Query: 154 DSLSISTCKNTLT----KHLSGGQKKRLSIALELLSNP-SIIFLDEPTTGLDYLNATNLV 208
L + + + + + L+ Q+KRL+I +EL++ P ++FLDEPT+GLD A ++
Sbjct: 883 KLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942
Query: 209 KLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT-YQGTV----PGLVPYLSDF 263
KL+R +A G I+CT+HQPSA L D L +L +G T Y G + ++ Y
Sbjct: 943 KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH 1002
Query: 264 G-YQCPSNYNPADYVIEVS-------LEADRMFEPCTNGKFFNANSSHNTKTVLKTIEEK 315
G +CP + NPA++++EV D E N + A + L +E +
Sbjct: 1003 GAPKCPEDANPAEWMLEVIGAAPGAHANQD-YHEVWRNSSEYQAVKNE-----LDRLEAE 1056
Query: 316 GLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIM 375
LS E + Y A QF ++L RT + +R + L + F+G
Sbjct: 1057 -LSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFT 1115
Query: 376 YRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMI---ITYPLEFEITRREHFNRWFSLKA 432
+ +G + N + +F +T+ + + + +E+ RE +R FS A
Sbjct: 1116 FFKVGTSLQGLQNQMFAVFMATVLFN-PLIQQYLPPFVAQRDLYEV--RERPSRTFSWLA 1172
Query: 433 YYLATMVADIPVQLLCTVIYCVTVYF-------ISKQPLELDRFAMFLLICVFLTLYSQG 485
+ A + +IP L+ I+ Y+ SK +R +F L+ LY
Sbjct: 1173 FIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFST 1232
Query: 486 MGVLVGMILDV-KNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGIL 544
+G +V N + L F G P + F+++ S + ++ +L
Sbjct: 1233 LGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALL 1292
Query: 545 LSVYGYDRDQLKCYE------------------------------------EYCHFKSPA 568
+ K E +C +
Sbjct: 1293 STGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTN 1352
Query: 569 KFLDALDMKNGDYSYDL--FFLIVSYILVKIASYLVLYF 605
FL+ + K YS F + +++I I + + Y+
Sbjct: 1353 DFLEPISSK---YSGRWRNFGIFIAFIFFNIIATVFFYW 1388
Score = 152 bits (386), Expect = 1e-38
Identities = 124/550 (22%), Positives = 235/550 (42%), Gaps = 59/550 (10%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA----GYRRPKKTETNSGYIEINE 96
K+ DILK + G+ EL+V+LG GSG + LL +A G+ + I E
Sbjct: 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE 131
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL-GNQYSRKAKESKVDSIAD- 154
+ + R + Y + ++ LTV E+L AA K N+ ++E IAD
Sbjct: 132 IK----KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV 187
Query: 155 ---SLSISTCKNT-----LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
+ +S +NT + +SGG++KR+SIA L I D T GLD A
Sbjct: 188 YMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALE 247
Query: 207 LVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGY 265
++ L+ A+ T + ++Q S + D + VL EGY Y G Y G+
Sbjct: 248 FIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGF 307
Query: 266 QCPSNYNPADYVIEVSLEADRMFEPCTNGKF------FNA---NSS-------------- 302
+CP AD++ ++ A+R +P K F NS
Sbjct: 308 KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLD 367
Query: 303 -HNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVR 361
+ + E ++ + + S+ PY Q L R ++ + T
Sbjct: 368 RCSESDTKEAYRESHVAKQSKRTRPSS--PYTVSFSMQVKYCLARNFLRMKGNPSFTLFM 425
Query: 362 LSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTAL---SSMIITYPLEFEI 418
+ ++I+ L ++ + + + ++ LFF+ +F F++L +SM P I
Sbjct: 426 VFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARP----I 481
Query: 419 TRREHFNRWFSL---KAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLI 475
+ +R ++L A +A+++++IP +++ +V++ + +YF+ RF +LLI
Sbjct: 482 VEK---HRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLI 538
Query: 476 CVFLTLYSQGMGVLVGMILD-VKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLS 534
TL + +G + + + + LL +I++G+ + + K+++ ++
Sbjct: 539 LFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVN 598
Query: 535 FLKHSLEGIL 544
L ++ E ++
Sbjct: 599 PLAYAFESLM 608
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 179 bits (455), Expect = 2e-52
Identities = 79/212 (37%), Positives = 123/212 (58%), Gaps = 4/212 (1%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
K IL D+S S ++ ILG SGSGKT LLD ++G R + T SG I N +
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG--RVEGGGTTSGQILFNGQPRK 75
Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS-LSIS 159
+ +K Y+ QD++L LTV E+LT A L+L + S ++ +V+ + L+++
Sbjct: 76 PDQF-QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT 134
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT 219
L K +SGG+++R+SIA++LL +P ++ LDEPT+GLD A NLV L +A +
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 220 MIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
++I T+HQP + L + D + +L+ G Y G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 155 bits (394), Expect = 7e-43
Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 9/228 (3%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
K L +S E+ +LGP+G+GKT LL ILAG +P SG I + +
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-----TSGEILVLGYDVV 70
Query: 101 DHRM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
+R+ Y+ Q+ L LTV E+L A L S++ E +++ + + +
Sbjct: 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLELFGLE 127
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT 219
N + LSGG K+RLSIAL LL +P ++ LDEPT+GLD + + +LLR++A +G
Sbjct: 128 DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG 187
Query: 220 MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQC 267
+ I + D + +L +G +GT L G
Sbjct: 188 VTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIE 235
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 157 bits (398), Expect = 4e-40
Identities = 140/541 (25%), Positives = 254/541 (46%), Gaps = 49/541 (9%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL----Q 100
+L++++G F L+ ++G SG+GKT L+D+LAG +KT GYIE + R+ +
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKT---GGYIE-GDIRISGFPK 946
Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST 160
+ S Y Q+++ +TV ESL +A L+L + S++ K VD + + + +
Sbjct: 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN 1006
Query: 161 CKNTLT-----KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
K+ + LS Q+KRL+IA+EL++NPSIIF+DEPT+GLD A +++ +R+
Sbjct: 1007 LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1066
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTE-GYCTYQGT--------------VPGLVPYL 260
G ++CT+HQPS + D L ++ G Y G +PG VP
Sbjct: 1067 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPG-VP-- 1123
Query: 261 SDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHN-TKTVLKTIEEKGLSS 319
+ YNPA +++EVS A + + + ++S + K ++K + +
Sbjct: 1124 -----KIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGA 1178
Query: 320 KEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI 379
+ Y +T+ Y QF L + +R VR L +G ++ +
Sbjct: 1179 SDLY--FATQ--YSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKV 1234
Query: 380 G---DDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLA 436
G +A + + ++ + +F+ S++ +E + RE +S Y +A
Sbjct: 1235 GTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIA 1294
Query: 437 TMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVL-VGMILD 495
+V +IP L+ T Y + VY + +F F I F LY G++ V + +
Sbjct: 1295 QVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPN 1354
Query: 496 VKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQL 555
+ IF + +FSG+F+ + P + + + + + ++ G+++S YG D +
Sbjct: 1355 QQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTI 1414
Query: 556 K 556
K
Sbjct: 1415 K 1415
Score = 120 bits (302), Expect = 3e-28
Identities = 148/573 (25%), Positives = 264/573 (46%), Gaps = 102/573 (17%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
ILKD SG+ ++++LGP SGKT LL LAG + + SG I N RL + +
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAG--KLDPSLKVSGEITYNGYRL-NEFV 236
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLK-------LGNQYSRKAK------ESKVDS 151
RK S YI Q+++ ++TV+E+L +A + L ++ +R+ K E++VD
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296
Query: 152 IADS------------------LSISTCKNTLT-----KHLSGGQKKRLSIALELLSNPS 188
+ L + CK+T+ + +SGGQKKR++ E++ P+
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPT 355
Query: 189 -IIFLDEPTTGLDYLNATNLVKLLRDMAH--QGTMIICTLHQPSASLLNMADYLYVLTEG 245
+F+DE +TGLD +VK L+ + H + T+++ +L QP+ ++ D + +L+EG
Sbjct: 356 KTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM-SLLQPAPETFDLFDDIILLSEG 414
Query: 246 YCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNT 305
YQG ++ + G++CP AD++ EV+ + D+ + + A+ +
Sbjct: 415 QIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQ--------EQYWADRNKPY 466
Query: 306 KTVLKTIEEKGLSSKEFY--SVLSTEIPYPAD---------CLSQFCILLKRTLIKCFRD 354
+ + ++ E K F+ L E+ P D S++ + K L+K D
Sbjct: 467 RYI--SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV-PKMELLKACWD 523
Query: 355 R-----------FLTK-VRLSLHLIIGSFLGI---MY-RGIGDDAARVHNNLSLLF--FS 396
+ ++ K V++ + I S + + M+ R D A + +LLF
Sbjct: 524 KEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIG---ALLFSMII 580
Query: 397 TMFLMFTALSSMIITYPLEFEITRREHFN-RWFSLKAYYLATMVADIPVQLLCTVIY-CV 454
MF F L+ MI P+ F R F+ W + L T + IP+ ++ +V++ +
Sbjct: 581 NMFNGFAELALMIQRLPV-FYKQRDLLFHPPW----TFTLPTFLLGIPISIIESVVWVVI 635
Query: 455 TVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIF----GPLTLLPW 510
T Y I P E RF LL+ VFL Q + +I V +I G L LL
Sbjct: 636 TYYSIGFAP-EASRFFKQLLL-VFLI--QQMAAGIFRLIASVCRTMIIANTGGALVLLLV 691
Query: 511 TIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGI 543
+ G+ + + + P+ +++ + +S L + +
Sbjct: 692 FLLGGFILPKGEIPNWWEWAYWVSPLSYGFNAL 724
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 141 bits (357), Expect = 7e-39
Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 39/227 (17%)
Query: 26 ISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT 85
+++ L Y + +L +ISG L+ ++G SG+GKT LLD+LAG R K
Sbjct: 4 LTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG--R-KTA 59
Query: 86 ETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK 145
+G I IN L + ++ + Y+ Q ++ LTV E+L +A L+
Sbjct: 60 GVITGEILINGRPLDKN--FQRSTGYVEQQDVHSPNLTVREALRFSALLR---------- 107
Query: 146 ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
LS Q+KRL+I +EL + PSI+FLDEPT+GLD A
Sbjct: 108 ----------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAY 145
Query: 206 NLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYCTYQG 251
N+V+ L+ +A G I+CT+HQPSAS+ D L +L G Y G
Sbjct: 146 NIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 132 bits (336), Expect = 1e-35
Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 18/217 (8%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
+ SY ++ L DIS E +I+GP+GSGK+ LL +L G P SG + +
Sbjct: 6 SFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT-----SGEVLV 60
Query: 95 NETRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG---NQYSRKAKESKV 149
+ L + LR++ + Q+ Q TV + G + E +V
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQ-FFG----PTVEEEVAFGLENLGLPEEEIEERV 115
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
+ + + + ++ LSGGQK+R++IA L +P I+ LDEPT GLD L++
Sbjct: 116 EEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE 175
Query: 210 LLRDMAHQG-TMIICTLHQPSASLLNMADYLYVLTEG 245
LL+ + +G T+II T H LL +AD + VL +G
Sbjct: 176 LLKKLKAEGKTIIIVT-HDLDL-LLELADRVIVLEDG 210
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 130 bits (329), Expect = 1e-34
Identities = 58/212 (27%), Positives = 111/212 (52%), Gaps = 5/212 (2%)
Query: 339 QFCILLKRTLIKCFRDRFLTKV-RLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFST 397
Q LLKR ++ +RD L + RL L++ G ++ + + N LLFFS
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGL-NRPGLLFFSI 60
Query: 398 MFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVY 457
+F F++L+ + + E + RE + +S AY LA ++ ++P+ LL +I+ + VY
Sbjct: 61 LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120
Query: 458 FISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMIL-DVKNGVIFGPLTLLPWTIFSGY 516
F+ L + RF +FLL+ + L + G+G+ + + ++ GPL LLP + SG+
Sbjct: 121 FMV--GLPVSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178
Query: 517 FVLQRDSPDCFKFLFKLSFLKHSLEGILLSVY 548
F+ P ++++ L+ L +++E + + +
Sbjct: 179 FIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 126 bits (318), Expect = 4e-33
Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 11/223 (4%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
T +Y +K + D+S E+ +LG +G+GKT L +L G RP SG I
Sbjct: 7 TKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-----TSGTAYI 61
Query: 95 NETRLQDHRM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
N ++ R R+ Y Q + L + LTV E L A LK G + + +V+ +
Sbjct: 62 NGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK-G--LPKSEIKEEVELLL 118
Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
L ++ N + LSGG K++LS+A+ L+ PS++ LDEPT+GLD + + L+ +
Sbjct: 119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178
Query: 214 MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256
+ ++I+ T A L D + ++++G G+ L
Sbjct: 179 VRKGRSIILTTHSMDEAEAL--CDRIAIMSDGKLRCIGSPQEL 219
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 123 bits (310), Expect = 3e-32
Identities = 65/211 (30%), Positives = 96/211 (45%), Gaps = 30/211 (14%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN-ETRLQD 101
ILKD SGV E+ ++LG GSG + LL LA R + + G I N +
Sbjct: 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN--RTEGNVSVEGDIHYNGIPYKEF 77
Query: 102 HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC 161
E Y+ ++++ LTV E+L A K GN++ R
Sbjct: 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-GNEFVRG------------------ 118
Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTM 220
+SGG++KR+SIA L+S S++ D T GLD A ++K +R MA T
Sbjct: 119 -------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 221 IICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
+L+Q S + ++ D + VL EG Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 123 bits (310), Expect = 7e-32
Identities = 68/210 (32%), Positives = 110/210 (52%), Gaps = 20/210 (9%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQD 101
LKD++ + E I+GPSGSGK+ LL++L G +P SG + IN T+L +
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-----SGEVLINGKDLTKLSE 74
Query: 102 HRM--LRKESC-YIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
+ LR++ ++ Q+ NLL +L TV E++ + + S ++ + + + L
Sbjct: 75 KELAKLRRKKIGFVFQNFNLLPDL-TVLENVELPLLIAG---KSAGRRKRAAEELLEVLG 130
Query: 158 IST-CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
+ LSGGQ++R++IA L++NP II DEPT LD A +++LLR++
Sbjct: 131 LEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK 190
Query: 217 Q-GTMIICTLHQPSASLLNMADYLYVLTEG 245
+ G II H P L AD + L +G
Sbjct: 191 ERGKTIIMVTHDP--ELAKYADRVIELKDG 218
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 120 bits (304), Expect = 4e-31
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 17/226 (7%)
Query: 33 YDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
+ Y K LKD+S E +++GP+GSGK+ LL +L G +P SG +
Sbjct: 8 NLSFRYP-GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT-----SGEV 61
Query: 93 EINETRL---QDHRMLRKESCYIMQDNLLQEL-LTVEESLTVAAHLKLGNQYSRKAKESK 148
++ + LR++ + Q+ Q TVE+ + LG R+ E +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEV-AFGLENLG--LPREEIEER 118
Query: 149 VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
V + + + + +LSGGQK+R++IA L P I+ LDEPT GLD L+
Sbjct: 119 VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL 178
Query: 209 KLLRDMAHQG--TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+LL+ + +G T+II T H +L AD + VL +G G
Sbjct: 179 ELLKKLKEEGGKTIIIVT-HDLEL-VLEYADRVVVLDDGKILADGD 222
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 120 bits (303), Expect = 1e-30
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 20/225 (8%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S+ K IL D+S E++ ILGP+GSGK+ LL LAG +PK SG + ++
Sbjct: 9 SFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-----SGEVLLDG 63
Query: 97 TRLQD--HRMLRKESCYIMQDNLLQELLTVEE--SLTVAAHLKLGNQYSRKAKESKVDSI 152
+ + L K+ Y+ Q LTV E L HL L + S K E V+
Sbjct: 64 KDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS-KEDEEIVEEA 122
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
+ L + + LSGG+++R+ IA L I+ LDEPT+ LD + +++LLR
Sbjct: 123 LELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLR 182
Query: 213 DMAH-QGTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGT 252
D+ +G ++ LH LN+A D+L +L +G QGT
Sbjct: 183 DLNREKGLTVVMVLHD-----LNLAARYADHLILLKDGKIVAQGT 222
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 114 bits (288), Expect = 3e-29
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 13/192 (6%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
+ SY K +IL D+S + E+ + G +G+GKT L ILAG + G I +
Sbjct: 6 SFSYK-KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS-----GSILL 59
Query: 95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
N ++ + RK Y+MQD Q L T +V L LG + E + +++
Sbjct: 60 NGKPIK-AKERRKSIGYVMQDVDYQ-LFTD----SVREELLLGLKELDAGNE-QAETVLK 112
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
L + K LSGGQK+RL+IA LLS ++ DEPT+GLDY N + +L+R++
Sbjct: 113 DLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL 172
Query: 215 AHQGTMIICTLH 226
A QG +I H
Sbjct: 173 AAQGKAVIVITH 184
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 114 bits (287), Expect = 7e-29
Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 25/223 (11%)
Query: 35 THSYS--IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
+ +Y + LK +S E I+GPSGSGK+ LL+IL G RP SG +
Sbjct: 7 SKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-----TSGEV 61
Query: 93 EINET---RLQDHRM--LRKESC-YIMQD-NLLQELLTVEESLTVAAHL--KLGNQYSRK 143
++ T +L + + R+ ++ Q NLL +L T E++ + L + +
Sbjct: 62 RVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL-TALENVELPLLLAGVPKKERRER 120
Query: 144 AKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
A+E + + + + N LSGGQ++R++IA L ++P II DEPT LD
Sbjct: 121 AEE-----LLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
Query: 204 ATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEG 245
+++LLR++ + GT I+ H P L AD + L +G
Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 111 bits (281), Expect = 7e-28
Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 20/233 (8%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ- 100
+ +LK + E+ I+GPSGSGK+ LL ++ G RP +SG + I+ +
Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-----DSGEVLIDGEDISG 66
Query: 101 ----DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
+ LR+ + Q L + LTV E+ VA L+ + S + V +++
Sbjct: 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFEN--VAFPLREHTRLSEEEIREIVLEKLEAV 124
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-- 214
+ ++ LSGG KKR+++A L +P ++ DEPT GLD + + + L+R +
Sbjct: 125 GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK 184
Query: 215 AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV----PYLSDF 263
T I+ T H + +AD + VL +G +GT L P + F
Sbjct: 185 ELGLTSIMVT-HDLD-TAFAIADRIAVLYDGKIVAEGTPEELRASDDPLVRQF 235
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 107 bits (271), Expect = 3e-27
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 46/210 (21%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S K L DIS E+ +LGP+G+GKT L+ I+ G +P +SG I++
Sbjct: 7 SKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-----DSGEIKVLG 61
Query: 97 TRLQDHRM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
++ +++ Y+ ++ L E LTV E+L
Sbjct: 62 KDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL--------------------------- 94
Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
LSGG K+RL++A LL +P ++ LDEPT+GLD + +LLR++
Sbjct: 95 ------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEG 245
+G I+ + H + D + +L G
Sbjct: 143 KEGKTILLSSHILE-EAERLCDRVAILNNG 171
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 106 bits (268), Expect = 4e-27
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 62/211 (29%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S+ + L ++S + E+ ++GP+GSGK+ LL +AG +P SG I I+
Sbjct: 6 SFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-----TSGEILIDG 60
Query: 97 TRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
+ + LR+ Y+ Q
Sbjct: 61 KDIAKLPLEELRRRIGYVPQ---------------------------------------- 80
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
LS GGQ++R+++A LL NP ++ LDEPT+GLD + L++LLR++
Sbjct: 81 -LS-------------GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126
Query: 215 AHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
A +G +I H P AD + VL +G
Sbjct: 127 AEEGRTVIIVTHDPE-LAELAADRVIVLKDG 156
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 108 bits (272), Expect = 4e-27
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
K IL D++ ++ I+G SGSGK+ LL+I+ + +SG + +N
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-----DSGQVYLNGQE 61
Query: 99 L------QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
+ + R++ Y+ Q+ L E TVEE+L + LK S+K K K
Sbjct: 62 TPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLG--LKYKKL-SKKEKREKKKEA 118
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
+ + ++ LSGG+++R+++A +L P +I DEPT LD N ++ LL
Sbjct: 119 LEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLL 178
Query: 213 DMAHQGTMIICTLHQPSASLLNMAD 237
++ +G II H P + AD
Sbjct: 179 ELNDEGKTIIIVTHDPEVA--KQAD 201
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 107 bits (269), Expect = 6e-27
Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 59/225 (26%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
F+++S+S Y + K +LKD+S E I+GPSGSGK+ LL +L P
Sbjct: 3 FKNVSFS--------YPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP 54
Query: 83 KKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
SG I I+ L+ D LRK Y+ QD L +
Sbjct: 55 -----TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL---------------------F 88
Query: 141 SRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
S +I +++ LSGGQ++R++IA LL +P I+ LDE T+ LD
Sbjct: 89 S--------GTIRENI------------LSGGQRQRIAIARALLRDPPILILDEATSALD 128
Query: 201 YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
+++ LR +A T+I+ H+ S + AD + VL +G
Sbjct: 129 PETEALILEALRALAKGKTVIVIA-HRL--STIRDADRIIVLDDG 170
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 107 bits (269), Expect = 8e-27
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 46/218 (21%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S + +L D+S + E+ ILGP+G+GK+ LL LAG +P SG I ++
Sbjct: 6 SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-----SGEILLDG 60
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTV--AAHLKLGNQYSRKAKESKVDSIAD 154
L + KE L +++ V ++L + AHL + +
Sbjct: 61 KDL--ASLSPKE--------LARKIAYVPQALELLGLAHLA----------DRPFNE--- 97
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
LSGG+++R+ +A L P I+ LDEPT+ LD + L++LLR +
Sbjct: 98 --------------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143
Query: 215 AHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
A + G ++ LH + + AD + +L +G QG
Sbjct: 144 ARERGKTVVMVLHDLNLAAR-YADRVILLKDGRIVAQG 180
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 107 bits (270), Expect = 1e-26
Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 14/213 (6%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
+ +Y S L D+S E +LGPSG GKT LL ++AG RP +SG I I
Sbjct: 7 SKTY--GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-----DSGEILI 59
Query: 95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
+ + R+ + QD L LTV E +A LKL + ++V + +
Sbjct: 60 DGRDVTGVPPERRNIGMVFQDYALFPHLTVAE--NIAFGLKLRGV-PKAEIRARVRELLE 116
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
+ + N LSGGQ++R+++A L PS++ LDEP + LD L + L+++
Sbjct: 117 LVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKEL 176
Query: 215 --AHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
T I T Q A L +AD + V+ EG
Sbjct: 177 QRELGITTIYVTHDQEEA--LALADRIAVMNEG 207
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 103 bits (259), Expect = 4e-25
Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 25/223 (11%)
Query: 36 HSYSIKS--KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
H Y S K +L DI+ E+ ++ GPSGSGKT LL ++ G R + G ++
Sbjct: 9 HYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ-----EGSLK 63
Query: 94 I---------NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
+ + +Q LR+ YI Q + L LT +++ +A L+ S +
Sbjct: 64 VLGQELYGASEKELVQ----LRRNIGYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQE 117
Query: 145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
+ ++ +++ + + +LSGGQK+R++IA L+ P ++ DEPT LD +
Sbjct: 118 ARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177
Query: 205 TNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGY 246
++V+L++ +A QG I+ H +L++AD + + +G
Sbjct: 178 RDVVELMQKLAREQGCTILIVTHDN--RILDVADRIVHMEDGK 218
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 102 bits (257), Expect = 7e-25
Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 14/218 (6%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
T Y K L +S + +LGP+G+GKT L+ ILA P SG I I
Sbjct: 7 TKRY--GKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPS-----SGTIRI 58
Query: 95 NETRLQDHRM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
+ + LR+ Y+ Q+ + TV E L A LK S++ K +VD +
Sbjct: 59 DGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK--GIPSKEVKA-RVDEVL 115
Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
+ +++ LSGG ++R+ IA L+ +PSI+ +DEPT GLD LL +
Sbjct: 116 ELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175
Query: 214 MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
+ +I+ T H + ++ + + VL +G ++G
Sbjct: 176 LGEDRIVILST-HIVE-DVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 102 bits (257), Expect = 9e-25
Identities = 57/217 (26%), Positives = 111/217 (51%), Gaps = 12/217 (5%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-- 96
+ ++ +S E+ +LGP+G+GKT ++ G +P +SG I ++
Sbjct: 9 RYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-----DSGKILLDGQD 63
Query: 97 -TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
T+L H+ R Y+ Q+ + LTVEE++ ++ S+K +E K++ + +
Sbjct: 64 ITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEE 120
Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
I+ + + LSGG+++R+ IA L +NP + LDEP G+D + ++ K+++ +
Sbjct: 121 FHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK 180
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+G ++ T H L++ D Y++ EG +GT
Sbjct: 181 DRGIGVLITDHNVRE-TLSITDRAYIIYEGKVLAEGT 216
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 99 bits (250), Expect = 2e-24
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 48/214 (22%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S K +L D+S + E+ +LGPSGSGK+ LL +AG P +SG I I+
Sbjct: 7 SKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-----DSGSILIDG 61
Query: 97 TRLQDHRM----LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
L D LR+ + QD L LTV E++ +
Sbjct: 62 EDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------------- 100
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
LSGGQ++R+++A L +P ++ LDEPT+ LD + + LL+
Sbjct: 101 ----------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK 144
Query: 213 DM-AHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
+ A G ++ H +AD + VL +G
Sbjct: 145 SLQAQLGITVVLVTHDL-DEAARLADRVVVLRDG 177
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 100 bits (252), Expect = 7e-24
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 18/197 (9%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL--- 99
LKD++ E+ I+GPSG+GK+ LL L G P SG I N ++
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-----TSGEILFNGVQITKL 71
Query: 100 --QDHRMLRKESCYIMQD-NLLQELLTVEESLT--VAAH---LKLGNQYSRKAKESKVDS 151
++ R LR++ I Q NL+ L +E L + L +S++ K +D+
Sbjct: 72 KGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA 131
Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+ + + I LSGGQ++R++IA L+ P II DEP LD +A ++ +L
Sbjct: 132 L-ERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 212 RDMA-HQGTMIICTLHQ 227
+D+ G +I LHQ
Sbjct: 191 KDINQEDGITVIVNLHQ 207
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 98.9 bits (247), Expect = 1e-23
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 20/206 (9%)
Query: 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML------RK 107
+++E++ I G SG+GK+ LL +AG +P G I +N T L D R ++
Sbjct: 21 LNEEVTGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQQR 75
Query: 108 ESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
+ + Q L L V E+L K + VD + D L + N
Sbjct: 76 KIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPA 130
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH--QGTMIICTL 225
LSGG+K+R+++A L + P ++ LDEP + LD L+ L+ + +I T
Sbjct: 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT- 189
Query: 226 HQPSASLLNMADYLYVLTEGYCTYQG 251
H S +AD + V+ +G Y G
Sbjct: 190 HDLS-EAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 98.2 bits (245), Expect = 1e-23
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 13/185 (7%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+ + +S + E + GP+G GKT LL ILAG RP +SG + N T L + R
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-----DSGEVRWNGTALAEQRD 69
Query: 105 LRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
+ Y+ L+ L+ E+L A + G Q + ++ ++ ++ ++
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT-------IEDALAAVGLTGFED 122
Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
LS GQ++RL++A LS + LDEPTT LD L LLR +G +++
Sbjct: 123 LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLL 182
Query: 224 TLHQP 228
T HQ
Sbjct: 183 TTHQD 187
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 98.8 bits (247), Expect = 3e-23
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 16/199 (8%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ- 100
K LKD+S E ++GPSG+GK+ LL L G P SG + I+ T +
Sbjct: 13 GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-----TSGSVLIDGTDINK 67
Query: 101 ----DHRMLRKESCYIMQD-NLLQELLTVEESLT--VAAHLKLGNQYSRKAKESKVDSIA 153
R LR++ I Q NL++ L +E L+ + + + KE K ++A
Sbjct: 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALA 127
Query: 154 --DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+ + + LSGGQ++R++IA L+ P +I DEP LD ++ ++ LL
Sbjct: 128 ALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187
Query: 212 RDMAHQ-GTMIICTLHQPS 229
+ + + G +I +LHQ
Sbjct: 188 KRINREEGITVIVSLHQVD 206
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 98.5 bits (246), Expect = 3e-23
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 18/197 (9%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-----EINET 97
K LK+I+ E I+GPSG+GK+ LL + P +SG I +I +
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-----SSGSILLEGTDITKL 69
Query: 98 RLQDHRMLRKESCYIMQD-NLLQELLTVEESLT--VAAH---LKLGNQYSRKAKESKVDS 151
R + R LR+ I Q NL++ L +E L + L ++S + KE + +
Sbjct: 70 RGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA 129
Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+ + + ++ LSGGQ++R++IA L P +I DEP LD + ++ L
Sbjct: 130 L-ERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188
Query: 212 RDMA-HQGTMIICTLHQ 227
+ + G +I LHQ
Sbjct: 189 KRINKEDGITVIINLHQ 205
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 103 bits (260), Expect = 4e-23
Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 21/256 (8%)
Query: 1 MKSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV 60
E+ + L P+ + F+++S+ Y +L+D+S E
Sbjct: 452 TPPEQEGDKTLIHLPKLQGEIEFENVSF---RYGPDD-----PPVLEDLSLEIPPGEKVA 503
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLL 118
I+G SGSGK+ LL +L G +P G I ++ L D LR++ Y++QD L
Sbjct: 504 IVGRSGSGKSTLLKLLLGLYKP-----QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFL 558
Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDS--IADSLSISTCKNTLTKHLSGGQKKR 176
++ E++ + + A+ + + T +LSGGQ++R
Sbjct: 559 FSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
L++A LLS P I+ LDE T+ LD +++ L + T+II H+ S + A
Sbjct: 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA-HRL--STIRSA 674
Query: 237 DYLYVLTEGYCTYQGT 252
D + VL +G QG+
Sbjct: 675 DRIIVLDQGKIVEQGS 690
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 98.0 bits (245), Expect = 6e-23
Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 23/228 (10%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET---NSGYIE 93
+ S + IL + E+ ILG SGSGK+ LL ++ G RP K E +
Sbjct: 15 TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74
Query: 94 INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
++E L + +RK + Q L LTV E+ VA L+ ++++ ES + +
Sbjct: 75 LSEEELYE---IRKRMGVLFQQGALFSSLTVFEN--VAFPLR---EHTKL-PESLIRELV 125
Query: 154 DSLSISTC---KNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
+ + + LSGG +KR+++A + +P ++FLDEPT+GLD ++A +
Sbjct: 126 L-MKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184
Query: 208 VKLLRDMAHQ--GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+L+R++ T+I+ T H SLL +AD + VL +G +GT
Sbjct: 185 DELIRELNDALGLTVIMVT-HDLD-SLLTIADRVAVLADGKVIAEGTP 230
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 96.1 bits (240), Expect = 1e-22
Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 13/200 (6%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
+ S +L+D+S E I+GP+G+GK+ LL + G +P SG I +
Sbjct: 6 TVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT-----SGSIRVFG 60
Query: 97 TRLQDHRMLRKESCYIMQ-DNLLQEL-LTVEE--SLTVAAHLKLGNQYSRKAKESKVDSI 152
+ RK Y+ Q ++ ++ ++V + + + H L + S+ K KVD
Sbjct: 61 ---KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKA-KVDEA 116
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
+ + +S + LSGGQ++R+ +A L+ +P ++ LDEP G+D ++ +LLR
Sbjct: 117 LERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLR 176
Query: 213 DMAHQGTMIICTLHQPSASL 232
++ +G I+ H L
Sbjct: 177 ELRREGMTILVVTHDLGLVL 196
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 96.4 bits (241), Expect = 1e-22
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 19/215 (8%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQD 101
L+ +S E+ +LG +G+GKT LL + G RP+ SG I + T L
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR-----SGRIIFDGEDITGLPP 72
Query: 102 HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI--- 158
H R Y+ + + LTVEE+L + A Y+R+ KE++ + + +
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGA-------YARRDKEAQERDLEEVYELFPR 125
Query: 159 -STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
+N LSGG+++ L+IA L+S P ++ LDEP+ GL + + ++++ +
Sbjct: 126 LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
G M I + Q + L +AD YVL G GT
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGT 220
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 96.9 bits (242), Expect = 2e-22
Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 11/198 (5%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
+ S ++ +L+DIS E++ ++GP+G+GK+ LL + G +P G I+I
Sbjct: 11 TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS-----GEIKIFG 65
Query: 97 TRLQDHRMLRKESCYIMQDNLLQEL--LTVEE--SLTVAAHLKLGNQYSRKAKESKVDSI 152
++ R + Y+ Q + + +TV++ L + ++K KE KVD
Sbjct: 66 KPVRKRRKRLRIG-YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE-KVDEA 123
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
+ + + ++ LSGGQK+R+ +A L NP ++ LDEP TG+D + LL+
Sbjct: 124 LERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLK 183
Query: 213 DMAHQGTMIICTLHQPSA 230
++ +G ++ H
Sbjct: 184 ELRQEGKTVLMVTHDLGL 201
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 98.5 bits (246), Expect = 2e-22
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
S+ S ++LKD++ E V+LGPSG GK+ LL ++AG P SG I I
Sbjct: 10 RKSF--GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP-----TSGEILI 62
Query: 95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
+ + D ++ + Q+ L +TV E++ LKL + + +V +A
Sbjct: 63 DGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG--LKLRG-VPKAEIDKRVKEVAK 119
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY----LNATNLVKL 210
L + N LSGGQ++R+++A L+ P + LDEP + LD L + + KL
Sbjct: 120 LLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL 179
Query: 211 LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
+ T I T Q A +AD + V+ +G
Sbjct: 180 HERLG--TTTIYVTHDQVEAMT--LADRIVVMNDG 210
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 93.8 bits (234), Expect = 3e-22
Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 46/201 (22%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+L+++S E I+GPSGSGK+ L ++ G RP +I++ +
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE--- 73
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
L Y+ QD+ EL + SIA+++
Sbjct: 74 LGDHVGYLPQDD---ELFS--------------------------GSIAENI-------- 96
Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
LSGGQ++RL +A L NP I+ LDEP + LD L + + + G I
Sbjct: 97 ----LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI 152
Query: 225 LHQPSASLLNMADYLYVLTEG 245
H+P L AD + VL +G
Sbjct: 153 AHRP--ETLASADRILVLEDG 171
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 94.7 bits (236), Expect = 7e-22
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
LK++S + VILGP+GSGK+ LL+ +AG+ +P +SG I +N + +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-----DSGKILLNGKDITNLPPE 69
Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
+++ Y+ Q+ L +TV +++ + +K E KV IA+ L I N
Sbjct: 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRK 126
Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICT 224
+ LSGG+++R++IA L+ NP I+ LDEP + LD L + L+ + + G ++
Sbjct: 127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV 186
Query: 225 LH 226
H
Sbjct: 187 TH 188
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 96.3 bits (240), Expect = 7e-22
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKK-TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119
LGP+G+GKT + +L RP T +GY + E R +R+ + Q +
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK-----VRRSIGIVPQYASVD 78
Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179
E LT E+L + L G + E + + + + + + SGG ++RL I
Sbjct: 79 EDLTGRENLEMMGRL-YG--LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDI 135
Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH-QPSASLLNMADY 238
A L+ P ++FLDEPTTGLD + +R + +G I+ T H A L D
Sbjct: 136 AASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKL--CDR 193
Query: 239 LYVLTEGYCTYQGTVPGL 256
+ ++ G +GT L
Sbjct: 194 IAIIDHGRIIAEGTPEEL 211
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 94.1 bits (235), Expect = 7e-22
Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 35/237 (14%)
Query: 32 YYDTHSYSIKSKDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKK 84
+ T S+K L D+S S+ ++G SGSGK+ L + G +P
Sbjct: 10 SFPTGGGSVK---ALDDVS-------FSIKKGETLGLVGESGSGKSTLARAILGLLKP-- 57
Query: 85 TETNSGYI-----EINETRLQDHRMLRKESCYIMQD--NLLQELLTVEESLTVAAHLKLG 137
SG I ++ + + ++ RKE + QD + L +T+ E + G
Sbjct: 58 ---TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL-RIHG 113
Query: 138 NQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
++A++ V + + + N LSGGQ++R++IA L NP ++ DEPT
Sbjct: 114 KLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 197 TGLDYLNATNLVKLLRDMA--HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
+ LD ++ LL+ + T++ T H + +AD + V+ G +G
Sbjct: 174 SALDVSVQAQILDLLKKLQEELGLTLLFIT-HDLGV-VAKIADRVAVMYAGKIVEEG 228
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 94.6 bits (236), Expect = 9e-22
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 26/236 (11%)
Query: 35 THSYSIK--SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
+ Y + L ++S E I+G SGSGK+ L +LAG +P +SG I
Sbjct: 10 SIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-----SSGSI 64
Query: 93 EINETRLQDHRMLRKESC---YIMQD--NLLQELLTVEESLTVAAHLKLGNQYSRKAKES 147
++ L + + + QD + L TV L+ +
Sbjct: 65 LLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-----GLSKSQQ 119
Query: 148 KVDSIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
++ + D + + + L + LSGGQ++R++IA L+ P ++ LDEPT+ LD
Sbjct: 120 RIAELLDQVGLP--PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177
Query: 205 TNLVKLLRDMA--HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP 258
++ LL ++ T + + H A + +M D + V+ G G L+
Sbjct: 178 AQILNLLLELKKERGLTYLFIS-HD-LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 92.9 bits (231), Expect = 1e-21
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 13/188 (6%)
Query: 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL---- 99
++LK ++ E+ +LG +G+GK+ LL L G RP+ SG + I+ L
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-----SGAVLIDGEPLDYSR 60
Query: 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVA-AHLKLGNQYSRKAKESKVDSIADSLSI 158
+ R+ + QD +L + VA L LG S E +V ++
Sbjct: 61 KGLLERRQRVGLVFQDPD-DQLFAADVDQDVAFGPLNLG--LSEAEVERRVREALTAVGA 117
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
S + T LSGG+KKR++IA + P ++ LDEPT GLD ++ +LR + +G
Sbjct: 118 SGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177
Query: 219 TMIICTLH 226
++ + H
Sbjct: 178 MTVVISTH 185
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 92.5 bits (231), Expect = 3e-21
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 25/217 (11%)
Query: 45 ILKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN---ETRLQ 100
IL +S + V + E+ +LG +G+GKT LL + G P+ SG I + T L
Sbjct: 15 ILFGVS-LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR-----SGSIRFDGRDITGLP 68
Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-- 158
H R Y+ + + LTVEE+L + A+ + + + + +
Sbjct: 69 PHERARAGIGYVPEGRRIFPELTVEENLLLGAY--------ARRRAKRKARLERVYELFP 120
Query: 159 --STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
+ L LSGG+++ L+IA L+S P ++ LDEP+ GL + + +R++
Sbjct: 121 RLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD 180
Query: 217 QGTMIICTL-HQPSASLLNMADYLYVLTEGYCTYQGT 252
+G I+ L Q + L +AD YVL G +GT
Sbjct: 181 EGVTIL--LVEQNARFALEIADRAYVLERGRVVLEGT 215
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 92.6 bits (231), Expect = 3e-21
Identities = 70/198 (35%), Positives = 105/198 (53%), Gaps = 23/198 (11%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S S K++LK IS E+ VI+GPSGSGK+ LL L G P +SG I ++
Sbjct: 9 SKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-----DSGSITVDG 63
Query: 97 TRL---QDHRMLRKESCYIMQD-NLLQELLTVEESLTVA--AHLKLGNQYSRK-AKE--S 147
+ +D LR++ + Q NL L TV E++T+A KL +R+ A E
Sbjct: 64 EDVGDKKDILKLRRKVGMVFQQFNLFPHL-TVLENVTLAPVKVKKLSKAEAREKALELLE 122
Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
KV +AD + LSGGQ++R++IA L +P ++ DEPT+ LD +
Sbjct: 123 KVG-LADK------ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175
Query: 208 VKLLRDMAHQG-TMIICT 224
+ +++D+A +G TMII T
Sbjct: 176 LDVMKDLAEEGMTMIIVT 193
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 92.5 bits (231), Expect = 4e-21
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 40/222 (18%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQDH 102
L D+S E+ ++GP+G+GKT L ++++G+ RP SG + + T L H
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-----TSGSVLFDGEDITGLPPH 70
Query: 103 R-----MLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQY-------SRKAKESKV 149
+ R Q L EL TV E++ VAA + G+ + +
Sbjct: 71 EIARLGIGRT-----FQIPRLFPEL-TVLENVMVAAQARTGSGLLLARARREEREARERA 124
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
+ + + + ++ + LS GQ++RL IA L ++P ++ LDEP GL+ L +
Sbjct: 125 EELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184
Query: 210 LLRDMAHQGTMIICTLHQPSASLLNM------ADYLYVLTEG 245
L+R++ +G ++ H +M AD + VL +G
Sbjct: 185 LIRELRERGITVLLVEH-------DMDVVMSLADRVTVLDQG 219
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 92.6 bits (231), Expect = 4e-21
Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 25/216 (11%)
Query: 37 SYSIKSKDILKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY 91
S S ++L+DI+ G FV+ ILGPSG GK+ LL ++AG +P SG
Sbjct: 10 SKSFGGVEVLEDINLSVEKGEFVA-----ILGPSGCGKSTLLRLIAGLEKP-----TSGE 59
Query: 92 IEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
+ ++ + + Y+ Q++ L LTV ++ VA L+L S+ +
Sbjct: 60 VLLDGRPVTGPG---PDIGYVFQEDALLPWLTVLDN--VALGLELR-GKSKAEARERAKE 113
Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+ + + ++ ++ LSGG ++R++IA L + P ++ LDEP LD L L L
Sbjct: 114 LLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL 173
Query: 212 RDMAHQG--TMIICTLHQPSASLLNMADYLYVLTEG 245
+ + T+++ T H ++ +AD + VL+
Sbjct: 174 LRLWEETRKTVLLVT-HDVDEAVY-LADRVVVLSNR 207
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 91.7 bits (228), Expect = 4e-21
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR-- 103
L I+ + E ++GPSG+GK+ LL ++ P SG I +N + D R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-----TSGTIRVNGQDVSDLRGR 71
Query: 104 ---MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST 160
LR++ + QD L V E++ A + + +V + + + +S
Sbjct: 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV---TGVPPREIRKRVPAALELVGLSH 128
Query: 161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220
L LSGG+++R++IA ++++P+I+ DEPT LD ++ LL+ + GT
Sbjct: 129 KHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 221 IICTLH 226
++ H
Sbjct: 189 VVVATH 194
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 91.2 bits (227), Expect = 5e-21
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 12/185 (6%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+ D+S + E I GP+G+GKT LL ILAG RP ++G + +Q+ R
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-----DAGEVYWQGEPIQNVRE 71
Query: 105 LRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
++ Y+ ++ LT E+L ++ + + + ++ ++
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENL------HFWQRFHGSGNAATIWEALAQVGLAGLED 125
Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
LS GQ++R+++A LS + LDEP T LD L L+ A QG +++
Sbjct: 126 LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLL 185
Query: 224 TLHQP 228
T HQP
Sbjct: 186 TTHQP 190
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 91.9 bits (229), Expect = 6e-21
Identities = 59/219 (26%), Positives = 117/219 (53%), Gaps = 14/219 (6%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-- 96
S K + ++ D+S S E+ +LGP+G+GKT ++ G RP +SG I +++
Sbjct: 13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP-----DSGKILLDDED 67
Query: 97 -TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--VDSIA 153
T+L H+ R Y+ Q+ + LTVE+++ ++ + K E K +D++
Sbjct: 68 ITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIR---EKDLKKAERKEELDALL 124
Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
+ I+ +++ LSGG+++R+ IA L +NP I LDEP G+D + ++ ++++
Sbjct: 125 EEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184
Query: 214 MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ +G ++ T H L++ D Y++++G +G+
Sbjct: 185 LKDRGIGVLITDHN-VRETLDICDRAYIISDGKVLAEGS 222
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 90.8 bits (226), Expect = 9e-21
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
+ +Y L D+S E + GPSG+GKT LL +L G P + G + I
Sbjct: 8 SKAYP-GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR-----GQVRI 61
Query: 95 NET---RLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV 149
RL+ ++ LR+ + QD L TV E+ VA L++ + R+ + +V
Sbjct: 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYEN--VALPLEVRGKKEREI-QRRV 118
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
+ + + + + LSGG+++R++IA ++++P ++ DEPT LD + ++
Sbjct: 119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD 178
Query: 210 LLRDMAHQGTMIICTLHQPS 229
LL+ + +GT +I H S
Sbjct: 179 LLKRLNKRGTTVIVATHDLS 198
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 90.9 bits (226), Expect = 9e-21
Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S + + +IS + +LGP+G+GK+ LL ++ G RP SG I +
Sbjct: 7 SKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-----TSGEIIFD- 60
Query: 97 TRLQDHRMLRKESCYI---MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
H RK+ I ++ L E LT E+L V L +S++D +
Sbjct: 61 ----GHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTL-------LGLPDSRIDEVL 109
Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
+ + ++ K S G K+RL IA+ LL++P ++ LDEPT GLD + L +L+R
Sbjct: 110 NIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRS 169
Query: 214 MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255
QG +I + H S + +AD++ +++EG YQG +
Sbjct: 170 FPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 91.8 bits (228), Expect = 1e-20
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 12/222 (5%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
+SYS SK+ L +I+ + ++GP+G+GK+ L G +P SG + I
Sbjct: 10 CYSYS-GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT-----SGSVLI 63
Query: 95 NETRL--QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
+ ++ R +RK + Q+ Q E + LG + +V S
Sbjct: 64 RGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG--LDEETVAHRVSSA 121
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
L + ++ + HLSGG+KKR++IA + P ++ LDEPT GLD L+ L
Sbjct: 122 LHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181
Query: 213 DMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
D+ G +I + HQ + MADY+YV+ +G GTV
Sbjct: 182 DLPETYGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYGTV 222
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 89.5 bits (223), Expect = 2e-20
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 20/189 (10%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR- 103
+LK I E+ VI+GPSGSGK+ LL + P +SG I I+ +L D +
Sbjct: 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-----DSGTIIIDGLKLTDDKK 69
Query: 104 ---MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL---- 156
LR++ + Q L LTV E++T L + +++ + A L
Sbjct: 70 NINELRQKVGMVFQQFNLFPHLTVLENIT------LAPIKVKGMSKAEAEERALELLEKV 123
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
++ + LSGGQ++R++IA L NP ++ DEPT+ LD ++ +++D+A
Sbjct: 124 GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183
Query: 217 QG-TMIICT 224
+G TM++ T
Sbjct: 184 EGMTMVVVT 192
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 92.7 bits (231), Expect = 2e-20
Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 11/206 (5%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD 101
+ DIS E +LGPSG GKT LL ++AG+ +P +SG I ++ + D
Sbjct: 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-----SSGEILLDGEDITD 71
Query: 102 HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC 161
++ + Q L +TVEE+ VA LK+ + + +++V+ + + +
Sbjct: 72 VPPEKRPIGMVFQSYALFPHMTVEEN--VAFGLKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG--T 219
+ LSGGQ++R+++A L+ P ++ LDEP + LD + K L+++ + T
Sbjct: 130 ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 220 MIICTLHQPSASLLNMADYLYVLTEG 245
+ T Q A L M+D + V+ +G
Sbjct: 190 FVYVTHDQEEA--LAMSDRIAVMNDG 213
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 89.6 bits (223), Expect = 2e-20
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 41/204 (20%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNL 117
I+G GSGK+ LL +LAG +P SG + ++ T ++ D LR+ Y+ QD
Sbjct: 34 AIIGRVGSGKSTLLKLLAGLYKPT-----SGSVLLDGTDIRQLDPADLRRNIGYVPQDV- 87
Query: 118 LQELL--TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH------- 168
L T+ +++T LG + + I + ++ + + KH
Sbjct: 88 --TLFYGTLRDNIT------LGAPLADDER------ILRAAELAGVTDFVNKHPNGLDLQ 133
Query: 169 -------LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI 221
LSGGQ++ +++A LL++P I+ LDEPT+ +D + L + LR + T+I
Sbjct: 134 IGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLI 193
Query: 222 ICTLHQPSASLLNMADYLYVLTEG 245
I T H+P SLL++ D + V+ G
Sbjct: 194 IIT-HRP--SLLDLVDRIIVMDSG 214
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 93.5 bits (233), Expect = 5e-20
Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 12/215 (5%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
K L D++ + +L+ ++G SG+GK+ LL++L G+ P G I +N L+
Sbjct: 332 DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-----QGEIRVNGIDLR 386
Query: 101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS-IADSLS 157
D RK+ ++ Q+ L T+ E++ +A + ++ + +
Sbjct: 387 DLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDG 445
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
+ T LSGGQ +RL++A LLS S++ LDEPT LD +++ L+++A Q
Sbjct: 446 LDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505
Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
T+++ T H+ AD + VL G QGT
Sbjct: 506 KTVLVIT-HRL--EDAADADRIVVLDNGRLVEQGT 537
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 87.9 bits (218), Expect = 6e-20
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 15/173 (8%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC-YIMQD 115
E + GP+GSGKT LL ILAG P +G + +N L R Y+
Sbjct: 27 EALQVTGPNGSGKTTLLRILAGLSPP-----LAGRVLLNGGPLDFQRDSIARGLLYLGHA 81
Query: 116 NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175
++ L+V E+L + + +V+ + ++ ++ LS GQ++
Sbjct: 82 PGIKTTLSVLENLRF---------WHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQR 132
Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
R+++A LLS + LDEPTT LD + + +G M++ T HQ
Sbjct: 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 88.1 bits (219), Expect = 8e-20
Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
+ L D++ E V+LGPSG GKT L ++AG P SG I I +
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-----TSGRIYIGGRDVT 65
Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST 160
D ++ + Q+ L +TV +++ A LKL + + + +V +A+ L I
Sbjct: 66 DLPPKDRDIAMVFQNYALYPHMTVYDNI--AFGLKL-RKVPKDEIDERVREVAELLQIEH 122
Query: 161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD----YLNATNLVKLLRDMAH 216
+ K LSGGQ++R+++ ++ P + +DEP + LD L +L +
Sbjct: 123 LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR--L 180
Query: 217 QGTMIICTLHQPSASLLNMADYLYVLTEG 245
T I T Q A + MAD + V+ +G
Sbjct: 181 GTTTIYVTHDQVEA--MTMADRIAVMNDG 207
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 87.2 bits (217), Expect = 1e-19
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 31/211 (14%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDH 102
+ +S + E V+ GP+GSGKT LL ++AG P +G I+++ + D
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA-----AGTIKLDGGDIDDPDV 71
Query: 103 RMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC 161
E+C Y+ N ++ LTV E+L A LG +E + + +++ ++
Sbjct: 72 A----EACHYLGHRNAMKPALTVAENLEFWAAF-LGG------EELDIAAALEAVGLAPL 120
Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM--AH--Q 217
+ +LS GQK+R+++A L+SN I LDEPT LD V L ++ AH Q
Sbjct: 121 AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD----AAAVALFAELIRAHLAQ 176
Query: 218 GTMIICTLHQP----SASLLNMADYLYVLTE 244
G ++I H P A L++ +
Sbjct: 177 GGIVIAATHIPLGLPGARELDLGPFAAEDPA 207
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 86.7 bits (215), Expect = 3e-19
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 10/172 (5%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETRLQDHRMLRKESCYIMQD 115
E+ +LGP+G+GKT + +L +P T +G+ + E R +R+ + QD
Sbjct: 27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPR-----EVRRRIGIVFQD 81
Query: 116 NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175
+ + LT E+L + H +L + +E ++D + D + + + L K SGG ++
Sbjct: 82 LSVDDELTGWENLYI--HARLYGVPGAERRE-RIDELLDFVGLLEAADRLVKTYSGGMRR 138
Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMIICTLH 226
RL IA L+ P ++FLDEPT GLD ++ + + + G I+ T H
Sbjct: 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 87.4 bits (217), Expect = 3e-19
Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 19/218 (8%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
K IL D+S + +++ ++GP+G GK+ LL A P+ SG + + + +
Sbjct: 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ-----SGTVFLGDKPISML 69
Query: 103 --RMLRKESCYIMQDNLLQELLTVEE--SLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
R L + + Q +L E +TV E + + L L + S + ++V+ + I
Sbjct: 70 SSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-DNARVNQAMEQTRI 128
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
+ + LSGGQ++R +A+ L + ++ LDEPTT LD + L++L+R++ QG
Sbjct: 129 NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQG 188
Query: 219 TMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGT 252
++ LH LN A D+L VL G+ QGT
Sbjct: 189 KTVVTVLHD-----LNQASRYCDHLVVLANGHVMAQGT 221
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 87.2 bits (217), Expect = 3e-19
Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 25/201 (12%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQDHRMLRK---ESCYIMQ 114
++GP+G+GKT L +++ G+ +P +SG + T L HR+ R + I +
Sbjct: 35 LIGPNGAGKTTLFNLITGFYKP-----SSGTVIFRGRDITGLPPHRIARLGIARTFQITR 89
Query: 115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKES---------KVDSIADSLSISTCKNTL 165
L L TV E++ V AH +LG + + + + + + +
Sbjct: 90 --LFPGL-TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRP 146
Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICT 224
+LS GQ++RL IA L + P ++ LDEP GL+ L +L+R++ + G I+
Sbjct: 147 AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLI 206
Query: 225 LHQPSASLLNMADYLYVLTEG 245
H ++ +AD + VL G
Sbjct: 207 EHDMKL-VMGLADRIVVLNYG 226
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 86.4 bits (215), Expect = 3e-19
Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 31/241 (12%)
Query: 21 LLFQDISYSALYYDTHSYSIKSKDILKDIS-----GVFVSKELSVILGPSGSGKTKLLDI 75
L +++S + Y + L+DIS G FV+ ++GPSG GK+ LL I
Sbjct: 1 LEVRNVSKT---YGGGG---GAVTALEDISLSVEEGEFVA-----LVGPSGCGKSTLLRI 49
Query: 76 LAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK 135
+AG RP SG + ++ + + Y+ Q + L LTV ++ VA L+
Sbjct: 50 IAGLERPT-----SGEVLVDGEPVTGPG---PDRGYVFQQDALLPWLTVLDN--VALGLE 99
Query: 136 LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP 195
L + + + + + + +S +N LSGG ++R+++A L +P ++ LDEP
Sbjct: 100 LQGV-PKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158
Query: 196 TTGLDYLNATNLVKLLRDMAHQG--TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+ LD L L + L D+ + T+++ T H ++ +AD + VL+ V
Sbjct: 159 FSALDALTREQLQEELLDIWRETGKTVLLVT-HDIDEAVF-LADRVVVLSARPGRIVAEV 216
Query: 254 P 254
Sbjct: 217 E 217
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 87.4 bits (217), Expect = 3e-19
Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 31/233 (13%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
SYS+ + +L +S E+ ILGP+G+GK+ LL L+G P E + +N
Sbjct: 8 SYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS 67
Query: 97 ---TRLQDHR-MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--VD 150
L HR +L Q++ L TV+E + + ++ R+ +E +
Sbjct: 68 WPPEELARHRAVLP-------QNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAA 117
Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALEL------LSNPSIIFLDEPTTGLDYLNA 204
+ +S + LSGG+++R+ +A L + + +FLDEPT+ LD +
Sbjct: 118 QALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQ 177
Query: 205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGTV 253
+ ++L R +A +G ++ LH LN+A D + +L +G G+
Sbjct: 178 HHTLRLARQLAREGGAVLAVLHD-----LNLAAQYADRIVLLHQGRVIASGSP 225
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 86.0 bits (213), Expect = 4e-19
Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 20/205 (9%)
Query: 53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML---RKES 109
F E++ I+GPSGSGK+ LL+++AG+ P+ SG + IN D +
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-----SGRVLING---VDVTAAPPADRPV 72
Query: 110 CYIMQDNLLQELLTVEES--LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
+ Q+N L LTVE++ L ++ LKL R+A ++ + ++ + L
Sbjct: 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKL-TAEDRQA----IEVALARVGLAGLEKRLPG 127
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMIICTLH 226
LSGG+++R+++A L+ + ++ LDEP LD ++ L+ D+ A ++ H
Sbjct: 128 ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187
Query: 227 QPSASLLNMADYLYVLTEGYCTYQG 251
QP + +A + L G QG
Sbjct: 188 QPEDA-KRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 86.3 bits (214), Expect = 4e-19
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 22/203 (10%)
Query: 56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML---RKESCYI 112
E+ ILGPSG+GK+ LL+++AG+ P SG I IN DH + +
Sbjct: 25 GEIVAILGPSGAGKSTLLNLIAGFETPA-----SGEILING---VDHTASPPAERPVSML 76
Query: 113 MQDNLLQELLTVEESLTVAAH--LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLS 170
Q+N L LTV +++ + LKL + KV++ A + ++ L LS
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKL-----NAEQREKVEAAAAQVGLAGFLKRLPGELS 131
Query: 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA--HQGTMIICTLHQP 228
GGQ++R+++A L+ I+ LDEP + LD ++ L+ + + T+++ T H P
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT-HHP 190
Query: 229 SASLLNMADYLYVLTEGYCTYQG 251
+AD + L G QG
Sbjct: 191 E-DAARIADRVVFLDNGRIAAQG 212
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 86.7 bits (215), Expect = 6e-19
Identities = 70/203 (34%), Positives = 105/203 (51%), Gaps = 18/203 (8%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ-DHRML---RKESCYI 112
E+ +LGP+G+GK+ L G +P SG + I ++ D + L RK +
Sbjct: 29 EMVALLGPNGAGKSTLFLHFNGILKPT-----SGEVLIKGEPIKYDKKSLLEVRKTVGIV 83
Query: 113 MQ---DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL 169
Q D L TVEE + L LG S++ E +V ++ + +N HL
Sbjct: 84 FQNPDDQLFAP--TVEEDVAFGP-LNLG--LSKEEVEKRVKEALKAVGMEGFENKPPHHL 138
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229
SGGQKKR++IA L P II LDEPT+GLD + A+ ++KLL D+ +G II + H
Sbjct: 139 SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD 198
Query: 230 ASLLNMADYLYVLTEGYCTYQGT 252
+ AD +YV+++G +GT
Sbjct: 199 LVPV-YADKVYVMSDGKIIKEGT 220
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 87.4 bits (217), Expect = 8e-19
Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 16/209 (7%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQ 100
K + D++ E V++GPSGSGKT L ++ P SG I I+ +
Sbjct: 14 KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-----TSGEILIDGEDISDL 68
Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS--LSI 158
D LR++ Y++Q L LTV E++ L + ++ + + D + D L
Sbjct: 69 DPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDP 125
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ- 217
S + LSGGQ++R+ +A L ++P I+ +DEP LD + L + ++++ +
Sbjct: 126 SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL-QKE 184
Query: 218 -GTMIICTLHQPSASLLNMADYLYVLTEG 245
G I+ H + L +AD + V+ G
Sbjct: 185 LGKTIVFVTHDIDEA-LKLADRIAVMDAG 212
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 87.2 bits (217), Expect = 9e-19
Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 25/231 (10%)
Query: 31 LYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
+ + T + +K + +S E+ I+G SGSGK+ L + G G
Sbjct: 9 VSFPTDAGVVK---AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG 65
Query: 91 YIEIN--------ETRLQDHRMLRKESCYIMQD--NLLQELLTVEESL--TVAAHLKLGN 138
I + E L+ R KE I QD L ++T+ + + + H K
Sbjct: 66 EILFDGKDLLSLSEKELRKIR--GKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL- 122
Query: 139 QYSRKAKESKVDSIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEP 195
S+K + + + + + I + L + LSGG ++R+ IA+ L NP ++ DEP
Sbjct: 123 --SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEP 180
Query: 196 TTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEG 245
TT LD ++ LL+++ + GT +I H + +AD + V+ G
Sbjct: 181 TTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 84.8 bits (210), Expect = 2e-18
Identities = 55/214 (25%), Positives = 103/214 (48%), Gaps = 14/214 (6%)
Query: 46 LKDISGVFVSKELSV--ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR 103
++D+S F ++E + +LG +G+GKT LL ++A P +SG + I+
Sbjct: 18 VRDVS--FEAEEGEITGLLGENGAGKTTLLRMIATLLIP-----DSGKVTIDGVDTVRDP 70
Query: 104 MLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
+ ++ L LT E+L A L N SRK ++++ ++ L +
Sbjct: 71 SFVRRKIGVLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIAELSKRLQLLEYL 127
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
+ S G K++++IA L+ +PSI+ LDEPT+GLD ++ + ++G +I
Sbjct: 128 DRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVI 187
Query: 223 CTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256
+ H + + D + VL +G +G++ L
Sbjct: 188 FSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEAL 220
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 84.8 bits (211), Expect = 2e-18
Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 46/239 (19%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S + + +L D+S E+ ILGP+G+GK+ LL L+G P SG + +N
Sbjct: 9 SVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-----SGEVRLNG 63
Query: 97 TRLQD--------HR-MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG---NQYSRKA 144
L D R +L Q + L TVEE VA +G + SR
Sbjct: 64 RPLADWSPAELARRRAVLP-------QHSSLSFPFTVEE--VVA----MGRAPHGLSRAE 110
Query: 145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA--LELLSN----PSIIFLDEPTTG 198
++ V + + ++ LSGG+++R+ +A L L P + LDEPT+
Sbjct: 111 DDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170
Query: 199 LDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGT 252
LD + ++++L R +AH +G +I LH LN+A D + +L +G GT
Sbjct: 171 LDLAHQHHVLRLARQLAHERGLAVIVVLHD-----LNLAARYADRIVLLHQGRLVADGT 224
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 84.1 bits (208), Expect = 3e-18
Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 12/202 (5%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
L D++ + L +LGPSGSGK+ LL I+AG +P +SG I +N
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-----DSGRIRLNGQDATRVHAR 70
Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
++ ++ Q L + LTV ++ +A L++ K K +V+ + + + + +
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDN--IAFGLEIRKHPKAKIKA-RVEELLELVQLEGLGDRY 127
Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMIIC 223
LSGGQ++R+++A L P ++ LDEP LD L LR + + T +
Sbjct: 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187
Query: 224 TLHQPSASLLNMADYLYVLTEG 245
T Q A + +AD + V++ G
Sbjct: 188 THDQEEA--MEVADRIVVMSNG 207
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 83.6 bits (207), Expect = 3e-18
Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 16/222 (7%)
Query: 35 THSYSIKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
T + K + + +S E++ +LGP+G+GKT L +LAG P ++G+
Sbjct: 8 TKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-----DAGFA 62
Query: 93 EINETR-LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
++ +++ R+ ++ L + LT E+L A L ++++
Sbjct: 63 TVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGL---YGLKGDELTARLEE 119
Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+AD L + + S G +++++IA L+ +P ++ LDEPTTGLD + L + +
Sbjct: 120 LADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI 179
Query: 212 RDMAHQGTMIICTLH--QPSASLLNMADYLYVLTEGYCTYQG 251
R + G I+ + H Q L D + VL G Y+G
Sbjct: 180 RQLRALGKCILFSTHIMQEVERL---CDRVVVLHRGRVVYEG 218
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 83.6 bits (207), Expect = 3e-18
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 23/205 (11%)
Query: 61 ILGPSGSGKT----KLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD- 115
++G SGSGK+ +L +L P SG I ++ L + + IMQ+
Sbjct: 17 LVGESGSGKSLTCLAILGLL-----PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNP 71
Query: 116 -NLLQELLTVEESL--TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH---L 169
L T+ T+ + KL S++A+ ++++ +++ + + L K+ L
Sbjct: 72 RTAFNPLFTMGNHAIETLRSLGKL----SKQARALILEAL-EAVGLPDPEEVLKKYPFQL 126
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQP 228
SGG +R+ IAL LL P + DEPTT LD +N ++KLLR++ GT I+ H
Sbjct: 127 SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL 186
Query: 229 SASLLNMADYLYVLTEGYCTYQGTV 253
+ +AD + V+ +G +GTV
Sbjct: 187 GV-VARIADEVAVMDDGRIVERGTV 210
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 87.6 bits (218), Expect = 4e-18
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 22/196 (11%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ----DHRMLRKESCYIMQD- 115
++G SGSGK+ L ILAG P SG I + L + R LR+ + QD
Sbjct: 322 LVGESGSGKSTLARILAGLLPPS-----SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP 376
Query: 116 -NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH---LSG 171
+ L +TV + L L++ S + ++V + + + + L ++ LSG
Sbjct: 377 YSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP--EFLDRYPHELSG 432
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG--TMIICTLHQPS 229
GQ++R++IA L P ++ LDEP + LD ++ LL+D+ + T + +
Sbjct: 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-- 490
Query: 230 ASLLNMADYLYVLTEG 245
A + +AD + V+ +G
Sbjct: 491 AVVRYIADRVAVMYDG 506
Score = 82.6 bits (205), Expect = 1e-16
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 27/207 (13%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN---ETRLQDHRM---LRKESCYIMQ 114
I+G SGSGK+ L L G T SG + ++ L + M K I Q
Sbjct: 40 IVGESGSGKSTLALALMGLLPEGGRIT-SGEVILDGRDLLGLSEREMRKLRGKRIAMIFQ 98
Query: 115 DN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH---- 168
D L ++T+ + + A L SR + + + + + + +
Sbjct: 99 DPMTSLNPVMTIGDQIREALRLHGKG--SRAEARKRAVELLEQVGLP---DPERRDRYPH 153
Query: 169 -LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD-MAHQGTMIICTLH 226
LSGG ++R+ IA+ L P ++ DEPTT LD ++ LL+D G ++ H
Sbjct: 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH 213
Query: 227 QPSASLLNMADYLYVLTEGYCTYQGTV 253
+ +AD + V+ Y+G +
Sbjct: 214 DLGV-VAELADRVVVM------YKGEI 233
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 83.8 bits (207), Expect = 4e-18
Identities = 54/215 (25%), Positives = 115/215 (53%), Gaps = 11/215 (5%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---T 97
K + +++D+S S E+ +LGP+G+GKT ++ G ++G I I++ +
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI-----VPRDAGNIIIDDEDIS 68
Query: 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
L H R+ Y+ Q+ + L+V ++L A L++ + S + +E + + + +
Sbjct: 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFH 126
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
I ++++ + LSGG+++R+ IA L +NP I LDEP G+D ++ ++ +++ +
Sbjct: 127 IEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186
Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
G ++ T H + L + + Y++++G+ GT
Sbjct: 187 GLGVLITDHNVRET-LAVCERAYIVSQGHLIAHGT 220
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 87.5 bits (217), Expect = 5e-18
Identities = 77/261 (29%), Positives = 113/261 (43%), Gaps = 35/261 (13%)
Query: 3 SEEAELQD-LKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVI 61
EE E++D ++ F+++S+S Y K +LKDIS E I
Sbjct: 310 DEEPEVEDPPDPLKDTIGSIEFENVSFS---YPGK------KPVLKDISFSIEPGEKVAI 360
Query: 62 LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQ 119
+GPSGSGK+ L+ +L P SG I I+ ++D LRK + QD LL
Sbjct: 361 VGPSGSGKSTLIKLLLRLYDP-----TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLF 415
Query: 120 ELLTVEESLTVAAHLKLGNQY------SRKAKESKVDSIADSLS--ISTCKNTLTKHLSG 171
S T+ ++ LG K + +L T +LSG
Sbjct: 416 -------SGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
GQ++RL+IA LL NP I+ LDE T+ LD + L+ + T +I H+ S
Sbjct: 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA-HRL--S 525
Query: 232 LLNMADYLYVLTEGYCTYQGT 252
+ AD + VL G +GT
Sbjct: 526 TIKNADRIIVLDNGRIVERGT 546
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 83.0 bits (206), Expect = 5e-18
Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 25/222 (11%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
+ K LKDIS E++ ++GPSG GK+ LL +L + G + ++
Sbjct: 7 NVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG 66
Query: 97 TRLQDHRM----LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
+ D + LR+ + Q N ++ ++ G + + ++D
Sbjct: 67 KDIYDLDVDVLELRRRVGMVFQKPNPF--------PGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 152 IA-DSLSI-----STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
++L LSGGQ++RL +A L + P ++ LDEPT+ LD ++
Sbjct: 119 RVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTA 178
Query: 206 NLVKLLRDMAHQGTMIICT--LHQPSASLLNMADYLYVLTEG 245
+ +L+ ++ + T++I T + Q +AD L G
Sbjct: 179 KIEELIAELKKEYTIVIVTHNMQQ----AARVADRTAFLLNG 216
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 82.6 bits (205), Expect = 7e-18
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TR 98
++ L+D+S E + GPSG+GK+ LL ++ G RP G I +N +R
Sbjct: 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP-----TRGKILVNGHDLSR 68
Query: 99 LQDHR--MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
L+ LR++ + QD L TV E+ VA L++ + +V + D +
Sbjct: 69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYEN--VALPLRV-IGKPPREIRRRVSEVLDLV 125
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
+ L LSGG+++R++IA +++ P+++ DEPT LD + +++L ++
Sbjct: 126 GLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR 185
Query: 217 QGTMIICTLH 226
GT ++ H
Sbjct: 186 LGTTVLMATH 195
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 82.2 bits (203), Expect = 7e-18
Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 20/201 (9%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML---RKESCYIM 113
E+ I+GPSG+GK+ LL+++AG+ P SG I++N+ Q H L ++ +
Sbjct: 25 EIVAIMGPSGAGKSTLLNLIAGFIEPA-----SGSIKVND---QSHTGLAPYQRPVSMLF 76
Query: 114 QDNLLQELLTVEESLTVAAH--LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
Q+N L LTV +++ + H LKL ++ KV A + I+ + L + LSG
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKL-----NAEQQEKVVDAAQQVGIADYLDRLPEQLSG 131
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM-IICTLHQPSA 230
GQ++R+++A L+ I+ LDEP + LD L ++ L++ + + ++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS- 190
Query: 231 SLLNMADYLYVLTEGYCTYQG 251
+A + V+++G
Sbjct: 191 DARAIASQIAVVSQGKIKVVS 211
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 82.8 bits (205), Expect = 7e-18
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 20/218 (9%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
+ + LK IS E+ +GP+G+GKT L IL+G +P SG + +
Sbjct: 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-----TSGEVRVAGLVPW 86
Query: 101 DHR--MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--VDSIADSL 156
R LR+ Q L L V +S + A + Y K +D +++ L
Sbjct: 87 KRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI-----YDLPPARFKKRLDELSELL 141
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-A 215
+ +T + LS GQ+ R IA LL P I+FLDEPT GLD + N+ L++
Sbjct: 142 DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 216 HQGTMIICTLH--QPSASLLNMADYLYVLTEGYCTYQG 251
+GT ++ T H + +L A + V+ +G Y G
Sbjct: 202 ERGTTVLLTSHYMKDIEAL---ARRVLVIDKGRLLYDG 236
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 85.2 bits (211), Expect = 7e-18
Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 28/249 (11%)
Query: 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR 103
D + G ++ I G SGSGKT L+ ++AG RP + G I +N L D R
Sbjct: 15 DADFTLPGQ----GVTAIFGRSGSGKTTLIRLIAGLTRPDE-----GEIVLNGRTLFDSR 65
Query: 104 ML------RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR-KAKESKVDSIADSL 156
++ Y+ Q+ + L+V +L+ G + +R + + + + L
Sbjct: 66 KGIFLPPEKRRIGYVFQE------ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL 119
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-A 215
I L LSGG+K+R++I LLS+P ++ +DEP LD ++ L + A
Sbjct: 120 GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPAD 275
G I+ H +L +AD + VL +G G V D +
Sbjct: 180 EFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGP-IAEVWASPDLPWL---AREDQG 234
Query: 276 YVIEVSLEA 284
+IE +
Sbjct: 235 SLIEGVVAE 243
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 84.6 bits (210), Expect = 8e-18
Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 17/200 (8%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-----RMLRKESCYIMQD 115
I+G SG+GK+ LL ++ RP SG + ++ L R LR++ I Q
Sbjct: 37 IIGYSGAGKSTLLRLINLLERP-----TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQH 91
Query: 116 -NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174
NLL TV E+ VA L+L + + +V + + + +S + LSGGQK
Sbjct: 92 FNLLSSR-TVFEN--VAFPLELAGV-PKAEIKQRVAELLELVGLSDKADRYPAQLSGGQK 147
Query: 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMIICTLHQPSASLL 233
+R++IA L +NP I+ DE T+ LD ++++LL+D+ G I+ H+ +
Sbjct: 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VK 206
Query: 234 NMADYLYVLTEGYCTYQGTV 253
+ D + VL +G +GTV
Sbjct: 207 RICDRVAVLDQGRLVEEGTV 226
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 81.5 bits (202), Expect = 1e-17
Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 15/206 (7%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
K +L DIS E+ LGP+G+GKT + I+ G +P +SG I + Q
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-----DSGEITFDGKSYQ 65
Query: 101 D-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
LR+ I L T E+L + A L ++ ++D + D + +
Sbjct: 66 KNIEALRRIGALIEAPGFYPNL-TARENLRLLARLLGI-------RKKRIDEVLDVVGLK 117
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT 219
K S G K+RL IAL LL NP ++ LDEPT GLD L +L+ + QG
Sbjct: 118 DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGI 177
Query: 220 MIICTLHQPSASLLNMADYLYVLTEG 245
++ + H S + +AD + ++ +G
Sbjct: 178 TVLISSHLLS-EIQKVADRIGIINKG 202
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 82.0 bits (203), Expect = 2e-17
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 22/226 (9%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S S +K +L D+S ++ I+GP+G+GK+ LL +++ R K ++ I+ E
Sbjct: 8 SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS---RLLKKDSGEITIDGLE 64
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR----KAKESKVDSI 152
+ L K+ + Q+N + LTV + + YS+ K ++
Sbjct: 65 LTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRF-----PYSQGRLTKEDRRIINEA 119
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
+ L + + LSGGQ++R IA+ L + + LDEP LD ++ ++K+LR
Sbjct: 120 IEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 213 DMAHQ-GTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGTV 253
+A + G I+ LH +N A D++ L G QG+
Sbjct: 180 RLADELGKTIVVVLHD-----INFASCYSDHIVALKNGKVVKQGSP 220
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 83.9 bits (208), Expect = 2e-17
Identities = 76/245 (31%), Positives = 113/245 (46%), Gaps = 34/245 (13%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRL-- 99
LKDIS E +LGPSG GKT LL I+AG R +G I TRL
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-----TAGTIYQGGRDITRLPP 73
Query: 100 --QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
+D+ ++ Q L LTV ++ +A LK R +V + D +
Sbjct: 74 QKRDYGIV-------FQSYALFPNLTVADN--IAYGLK-NRGMGRAEVAERVAELLDLVG 123
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
+ + LSGGQ++R+++A L ++P ++ LDEP + LD +L +R + +
Sbjct: 124 LPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183
Query: 218 -G-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPAD 275
G T I+ T Q A L+MAD + V+ G GT P + Y+ P+ AD
Sbjct: 184 LGVTTIMVTHDQEEA--LSMADRIVVMNHGVIEQVGT-PQEI-------YRHPATPFVAD 233
Query: 276 YVIEV 280
+V EV
Sbjct: 234 FVGEV 238
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 83.9 bits (208), Expect = 2e-17
Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 22/192 (11%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR------MLRKESCYIMQ 114
+ GPSGSGKT L++++AG RP + G IE+N L D ++ Y+ Q
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDE-----GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174
D L TV +L+ G S +A+ D + L I + LSGG+K
Sbjct: 84 DARLFP------HYTVRGNLRYGMWKSMRAQ---FDQLVALLGIEHLLDRYPGTLSGGEK 134
Query: 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLL 233
+R++I LL+ P ++ +DEP LD ++ L + I+ H +L
Sbjct: 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL-DEVL 193
Query: 234 NMADYLYVLTEG 245
+AD + VL G
Sbjct: 194 RLADRVVVLENG 205
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 81.0 bits (200), Expect = 5e-17
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
SY K + L+D+S S EL V+LGPSG GKT LL+++AG+ P + G I++N
Sbjct: 12 SYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR-----GSIQLNG 66
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
R++ E + Q+ L L V ++ VA L+L + + + +
Sbjct: 67 RRIEGPG---AERGVVFQNEALLPWLNVIDN--VAFGLQLRG-IEKAQRREIAHQMLALV 120
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
+ ++ LSGG ++R+ IA L P ++ LDEP LD L + +LL D+
Sbjct: 121 GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180
Query: 217 Q-GTMIICTLHQPSASLLNMADYLYVLTEG 245
+ G ++ H +L +A L VL+ G
Sbjct: 181 ETGKQVLLITHDIEEALF-LATRLVVLSPG 209
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 81.2 bits (201), Expect = 6e-17
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
+ SY + LK++S E ILG +GSGK+ + IL G +P+ SG I+I
Sbjct: 14 SFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-----SGEIKI 68
Query: 95 NETRLQDH--RMLRKESCYIMQ--DNLLQEL-LTVEESLTVAAHLKLGNQYSRKAKESKV 149
+ + + +RK+ I Q DN Q + TVE+ +A L+ + K + +
Sbjct: 69 DGITISKENLKEIRKKIGIIFQNPDN--QFIGATVEDD--IAFGLE-NKKVPPKKMKDII 123
Query: 150 DSIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
D +A + + ++ L K +LSGGQK+R++IA L NP II DE T+ LD
Sbjct: 124 DDLAKKVGM---EDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180
Query: 207 LVKLLRDMAHQGT-MIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ K++ D+ +I H ++L AD + V +EG QG
Sbjct: 181 IKKIMVDLRKTRKKTLISITHDMDEAIL--ADKVIVFSEGKLIAQGK 225
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 80.8 bits (200), Expect = 6e-17
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 31/228 (13%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY------------RRPKKTETNSG 90
K IL D+S E I+GP+G+GKT LL +L G RR K ET
Sbjct: 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIF- 102
Query: 91 YIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES--K 148
E+ + + S + + ++E TV + + +G E
Sbjct: 103 --ELR-------KRIGLVSSELHERFRVRE--TVRDVVLSGFFASIGIYQEDLTAEDLAA 151
Query: 149 VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
+ + L + LS G+++R+ IA L+ +P ++ LDEP GLD + L+
Sbjct: 152 AQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211
Query: 209 KLLRDMA---HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
L ++A ++ T H + + +L EG QG +
Sbjct: 212 NRLEELAASPGAPALLFVT-HHA-EEIPPCFTHRLLLKEGEVVAQGKL 257
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 78.3 bits (194), Expect = 1e-16
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 26/176 (14%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-----EINETRLQDHRMLRKESCYIMQD 115
I GP+G+GKT LL ILAG RP ++G + I R + H+ L Y+
Sbjct: 32 IEGPNGAGKTSLLRILAGLARP-----DAGEVLWQGEPIRRQRDEYHQDL----LYLGHQ 82
Query: 116 NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL---SISTCKNTLTKHLSGG 172
++ LT E+L +L +++ ++L ++ ++ + LS G
Sbjct: 83 PGIKTELTALENLRFYQ--RLHGPGDD-------EALWEALAQVGLAGFEDVPVRQLSAG 133
Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
Q++R+++A L+ + LDEP T +D L LL A QG M+I T HQ
Sbjct: 134 QQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD 189
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 79.1 bits (195), Expect = 2e-16
Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 15/220 (6%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD 101
D+L ++S E+ I+G SGSGK+ LL +L G P + +++
Sbjct: 21 QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA 80
Query: 102 HRMLR-KESCYIMQ-DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
LR ++ +I Q +LL + +E VA L +G + + ++ +A ++ +
Sbjct: 81 KAELRNQKLGFIYQFHHLLPDFTALE---NVAMPLLIGKKKPAEINSRALEMLA-AVGLE 136
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQG 218
N LSGG+++R++IA L++NP ++ DEPT LD NA ++ +LL ++ QG
Sbjct: 137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196
Query: 219 TMIICTLHQPSASLLNMADYLYVLTE---GYCTYQGTVPG 255
T + H L +A + E G T + ++ G
Sbjct: 197 TAFLVVTHD-----LQLAKRMSRQLEMRDGRLTAELSLMG 231
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 79.1 bits (195), Expect = 2e-16
Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 28/233 (12%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S+S + I+ + L+ +LGP+GSGK+ LL +LAG RP + +++
Sbjct: 8 SWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDL-- 65
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN--QYSRKAKESKVDS--- 151
H + R+ + L+++ LTV + LG S A +S D+
Sbjct: 66 -----HGLSRRARARRVA--LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVV 118
Query: 152 ---IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
+A + ++ LSGG+++R+ +A L P ++ LDEPT LD +
Sbjct: 119 DRALARTELSHLADRDMST-LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 209 KLLRDMAHQGTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGTVPGLV 257
L+R++A G ++ LH LN+A D++ VL G G P V
Sbjct: 178 ALVRELAATGVTVVAALHD-----LNLAASYCDHVVVLDGGRVVAAGP-PREV 224
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 77.0 bits (190), Expect = 2e-16
Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 49/219 (22%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
+ SY + + +LK++S E +LG SGSGK+ LL +L G +P G I +
Sbjct: 7 SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-----QQGEITL 61
Query: 95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
+ + D + L L++V L +L +
Sbjct: 62 DGVPVSDL------------EKALSSLISV---LNQRPYL-----FD------------- 88
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
+T +N L + SGG+++RL++A LL + I+ LDEPT GLD + L+ L+ ++
Sbjct: 89 ----TTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV 144
Query: 215 AHQGTMIICTLHQPSASLLNM--ADYLYVLTEGYCTYQG 251
T+I T H L + D + L G QG
Sbjct: 145 LKDKTLIWITHH-----LTGIEHMDKILFLENGKIIMQG 178
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 78.4 bits (194), Expect = 2e-16
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 36/215 (16%)
Query: 45 ILKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99
L +S G F + +LGPSG GKT LL ++AG+ P SG I ++ +
Sbjct: 15 ALDGVSLDIKEGEFFT-----LLGPSGCGKTTLLRLIAGFETP-----TSGEILLDGKDI 64
Query: 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
+ ++ + Q+ L LTV E+ +A L+L + + + +V D + +
Sbjct: 65 TNLPPHKRPVNTVFQNYALFPHLTVFEN--IAFGLRL-KKLPKAEIKERVAEALDLVQLE 121
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA---- 215
N LSGGQ++R++IA L++ P ++ LDEP LD KL +DM
Sbjct: 122 GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL-------KLRKDMQLELK 174
Query: 216 --HQG---TMIICTLHQPSASLLNMADYLYVLTEG 245
+ T + T Q A L M+D + V+ +G
Sbjct: 175 RLQKELGITFVFVTHDQEEA--LTMSDRIAVMNKG 207
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 80.5 bits (199), Expect = 2e-16
Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 15/206 (7%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
L DIS S EL +LGPSG+GK+ LL I+AG P ++G I +N L D L
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-----DAGRIRLNGRVLFDVSNL 72
Query: 106 RKES---CYIMQDNLLQELLTVEESLTVAAHLKLGNQY-SRKAKESKVDSIADSLSISTC 161
++ Q L +TV ++ +A LK+ + S ++V+ + + +
Sbjct: 73 AVRDRKVGFVFQHYALFPHMTVADN--IAFGLKVRKERPSEAEIRARVEELLRLVQLEGL 130
Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GT 219
+ LSGGQ++R+++A L P ++ LDEP LD L + LR + H G
Sbjct: 131 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL-HDRLGV 189
Query: 220 MIICTLHQPSASLLNMADYLYVLTEG 245
+ H L +AD + VL +G
Sbjct: 190 TTVFVTHDQ-EEALELADRVVVLNQG 214
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 78.5 bits (194), Expect = 2e-16
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 14/205 (6%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
L D+S S EL +LGPSGSGKT LL ++AG RP +SG I D +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-----DSGTILFGGEDATDVPVQ 72
Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK---ESKVDSIADSLSISTCK 162
+ ++ Q L +TV ++ VA L++ + R + +KV + + +
Sbjct: 73 ERNVGFVFQHYALFRHMTVFDN--VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA 130
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG--TM 220
+ LSGGQ++R+++A L P ++ LDEP LD L + LR + + T
Sbjct: 131 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTT 190
Query: 221 IICTLHQPSASLLNMADYLYVLTEG 245
+ T Q A L +AD + V+ +G
Sbjct: 191 VFVTHDQEEA--LEVADRVVVMNKG 213
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 78.0 bits (193), Expect = 3e-16
Identities = 69/244 (28%), Positives = 124/244 (50%), Gaps = 42/244 (17%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
F++++++ YD + +LKD+S + + I+GPSGSGK+ +L +L +R
Sbjct: 3 FENVTFA---YDPG------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL--FRF- 50
Query: 83 KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-- 138
+ +SG I I+ +++ + LR+ + QD TV + T+ +++ G
Sbjct: 51 --YDVSSGSILIDGQDIREVTLDSLRRAIGVVPQD-------TVLFNDTIGYNIRYGRPD 101
Query: 139 ----QYSRKAKESKV-DSIADSLSISTCKNTL-----TKHLSGGQKKRLSIALELLSNPS 188
+ AK +++ D I + +T+ K LSGG+K+R++IA +L NP
Sbjct: 102 ATDEEVIEAAKAAQIHDKI---MRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPP 157
Query: 189 IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248
I+ LDE T+ LD + LRD++ T I+ H+ S +++N AD + VL +G
Sbjct: 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIA-HRLS-TIVN-ADKIIVLKDGRIV 214
Query: 249 YQGT 252
+GT
Sbjct: 215 ERGT 218
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 81.2 bits (201), Expect = 5e-16
Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 23/225 (10%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
+Y + LK+ + E ILG SGSGK+ LL +LAG P G I +N
Sbjct: 345 TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-----QQGSITLNG 399
Query: 97 TRLQ--DHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
+ D + LR+ + Q L T+ ++L +A + ++ ++ +
Sbjct: 400 VEIASLDEQALRETISVLTQRVHLFSG--TLRDNLRLANPDASDEELWAALQQVGLEKLL 457
Query: 154 DSLSISTCKNTLTK------HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
+S T LSGG+++RL++A LL + + LDEPT GLD + +
Sbjct: 458 ESAP----DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513
Query: 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ LL + A T+++ T L D + VL G +GT
Sbjct: 514 LALLFEHAEGKTLLMVTHR---LRGLERMDRIIVLDNGKIIEEGT 555
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 76.9 bits (190), Expect = 5e-16
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
L DIS E+ +LGP+G+GKT + ++ G P +SG + + L
Sbjct: 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-----DSGEVLFDGKPLD 65
Query: 101 D---HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
+R+ Y+ ++ L + V + L A LK ++ ++D + L
Sbjct: 66 IAARNRI-----GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLE 117
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
+S N + LS G ++++ ++ +P ++ LDEP +GLD +N L ++R++A
Sbjct: 118 LSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177
Query: 218 GTMIICTLHQ 227
G +I + HQ
Sbjct: 178 GKTVILSTHQ 187
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 77.2 bits (191), Expect = 5e-16
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDI 75
+++S + + LKD+S LSV I+G SG+GK+ L+
Sbjct: 4 LKNVSK---VFGDTGGKVT---ALKDVS-------LSVPKGEIFGIIGRSGAGKSTLIRC 50
Query: 76 LAGYRRPKKTETNSGYIEINETRLQDH-----RMLRKESCYIMQD-NLLQELLTVEESLT 129
+ G RP SG + ++ T L R R+ I Q NLL TV E+
Sbjct: 51 INGLERP-----TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR-TVFEN-- 102
Query: 130 VAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSI 189
VA L++ + E +V + + + + + LSGGQK+R+ IA L +NP +
Sbjct: 103 VALPLEIAGV-PKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161
Query: 190 IFLDEPTTGLDYLNATNLVKLLRD 213
+ DE T+ LD +++ LLRD
Sbjct: 162 LLCDEATSALDPETTQSILALLRD 185
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 79.7 bits (196), Expect = 5e-16
Identities = 57/235 (24%), Positives = 102/235 (43%), Gaps = 17/235 (7%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+L D+S + EL ++G SG GKT LL +AG+ + +G I I + L
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA---AGLTGRIAIADRDLTHAPP 76
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
++ + Q+ L L VE++ VA L+ E D++ + +
Sbjct: 77 HKRGLALLFQNYALFPHLKVEDN--VAFGLRAQKMPKADIAERVADAL-KLVGLGDAAAH 133
Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMII 222
L LSGG ++R++IA + P ++ LDEP + LD N+ + + + + I+
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193
Query: 223 CTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYV 277
C H +L +AD ++ +G G L Y P++ A+++
Sbjct: 194 CVTHDQDDALT-LADKAGIMKDGRLAAHGEPQAL--------YDAPADGFAAEFL 239
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 77.1 bits (190), Expect = 6e-16
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
ILK + V E I+GPSGSGK+ LL +LAG P +SG + + L H++
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP-----SSGEVRLLGQPL--HKL 77
Query: 105 -------LRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
LR ++ Q L LT E+ VA L+L + S ++ + ++
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALEN--VALPLELRGESSADSRAGAKALLE-AV 134
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA- 215
+ LSGG+++R+++A P ++F DEPT LD + LL +
Sbjct: 135 GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194
Query: 216 -HQGTMIICTLHQPS 229
T+++ T H P
Sbjct: 195 ERGTTLVLVT-HDPQ 208
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 77.1 bits (190), Expect = 6e-16
Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 21/223 (9%)
Query: 38 YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
Y IL +IS E+ I+G SGSGK+ L ++ + P E ++ ++
Sbjct: 10 YKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP---ENGRVLVDGHDL 66
Query: 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS-- 155
L D LR++ ++Q+N+L + ++ ++ L + + + +A +
Sbjct: 67 ALADPAWLRRQVGVVLQENVLF-------NRSIRDNIALADPGMSMERVIEAAKLAGAHD 119
Query: 156 --LSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
+ +T+ LSGGQ++R++IA L+ NP I+ DE T+ LDY + +++
Sbjct: 120 FISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179
Query: 210 LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ D+ T+II H+ S + AD + V+ +G QG+
Sbjct: 180 NMHDICAGRTVIIIA-HRLST--VKNADRIIVMEKGRIVEQGS 219
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 77.6 bits (191), Expect = 9e-16
Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 17/215 (7%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
LK I+ E++ ILG +G+GK+ L L G +P +SG I + + R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-----SSGRILFDGKPIDYSRKG 76
Query: 105 ---LRKESCYIMQ--DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
LR+ + Q DN L ++ A +LKL RK +VD+ I
Sbjct: 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK----RVDNALKRTGIE 132
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-G 218
K+ T LS GQKKR++IA L+ P ++ LDEPT GLD + + ++KLL +M + G
Sbjct: 133 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
II H L D ++V+ EG QG
Sbjct: 193 LTIIIATHDIDIVPL-YCDNVFVMKEGRVILQGNP 226
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 77.1 bits (190), Expect = 1e-15
Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 22/226 (9%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S+ + + +L +S F + +++ ++G +GSGK+ LL +L ++ P + G I ++
Sbjct: 18 SFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-----SEGEILLDA 72
Query: 97 TRLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAA---HLKLGNQYSRKAKESKVDS 151
L+ + ++ Y+ Q E +TV E + + H LG ++ +E KV+
Sbjct: 73 QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALG-RFGAADRE-KVEE 130
Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+ + + L LSGG+++R IA+ + + + LDEPT+ LD + +++ L+
Sbjct: 131 AISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV 190
Query: 212 RDMAHQ-GTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGT 252
++ + G +I LH +NMA DYL L G QGT
Sbjct: 191 HRLSQERGLTVIAVLHD-----INMAARYCDYLVALRGGEMIAQGT 231
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 73.1 bits (180), Expect = 1e-15
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 72 LLDILAGYRRPKKTETNSGYIEINETRLQD---HRMLRKESCYIMQDNLLQELLTVEESL 128
LL ++ G +P SG I ++ ++LRK + QD L LTV E+L
Sbjct: 3 LLKLITGLLQP-----TSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 129 TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL-TKHLSGGQKKRLSIALELLSNP 187
K +++ + + + + + LSGGQK+R++IA LL P
Sbjct: 58 FFG--------LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKP 109
Query: 188 SIIFLDEPTT 197
++ LDEPT
Sbjct: 110 KLLLLDEPTA 119
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 75.0 bits (185), Expect = 3e-15
Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 18/149 (12%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML---RKESCYIM 113
E ILGPSG+GK+ LL+++AG+ P SG + +N QDH R+ +
Sbjct: 26 ERVAILGPSGAGKSTLLNLIAGFLTPA-----SGSLTLNG---QDHTTTPPSRRPVSMLF 77
Query: 114 QDNLLQELLTVEESLTVAAH--LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
Q+N L LTV +++ + + LKL N R+ K+ +IA + I L LSG
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKL-NAAQRE----KLHAIARQMGIEDLLARLPGQLSG 132
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLD 200
GQ++R+++A L+ I+ LDEP + LD
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALD 161
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 75.1 bits (185), Expect = 4e-15
Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 24/221 (10%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRM 104
L D+S EL V++GP+G+GKT L+D++ G RP++ E G ++ T+L +HR+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDL--TKLPEHRI 78
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLK------LGNQYSRKAKESKVDSIADSLSI 158
R Q + E LTV E+L +A + L + R + ++D + ++ +
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFAR-LRAEERRRIDELLATIGL 137
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
++ L LS GQK+ L I + L +P ++ LDEP G+ +LL+ +A
Sbjct: 138 GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GK 196
Query: 219 TMIICTLHQPSASLLNM------ADYLYVLTEGYCTYQGTV 253
I+ H +M AD + VL EG +G++
Sbjct: 197 HSILVVEH-------DMGFVREIADKVTVLHEGSVLAEGSL 230
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 78.2 bits (193), Expect = 4e-15
Identities = 58/232 (25%), Positives = 91/232 (39%), Gaps = 46/232 (19%)
Query: 14 SPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL 73
L +D+S Y + +L +S E ILGPSGSGK+ LL
Sbjct: 328 VGLGKPTLELRDLSAG---YPG------APPVLDGVSLDLPPGERVAILGPSGSGKSTLL 378
Query: 74 DILAGYRRPKKTETNSGYIEINETRLQ--DHRMLRKESCYIMQD------NLLQELL--- 122
LAG P + G + ++ + D +R+ QD + + L
Sbjct: 379 ATLAGLLDPLQ-----GEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLAR 433
Query: 123 ---TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH---LSGGQKKR 176
T EE + L + + ++ D L L + LSGG+++R
Sbjct: 434 PDATDEELWAALERVGLADW---------LRALPDGLDTV-----LGEGGARLSGGERQR 479
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
L++A LL++ I+ LDEPT LD A L++ L A G ++ H
Sbjct: 480 LALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHHL 530
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 78.4 bits (194), Expect = 4e-15
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 53/209 (25%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHRMLRKESCYIMQDNLL 118
I+G GSGK+ LL +L G +P G + ++ + R D LR+ Y+ QD
Sbjct: 496 IIGRIGSGKSTLLKLLLGLYQP-----TEGSVLLDGVDIRQIDPADLRRNIGYVPQDP-- 548
Query: 119 QELL--TVEESLTVAAHLKLGNQYS------RKAKESKVDSIADSLSISTCKNTLTKH-- 168
L T+ +++ LG Y+ R A+ + V H
Sbjct: 549 -RLFYGTLRDNIA------LGAPYADDEEILRAAELAGVTEFVRR------------HPD 589
Query: 169 ------------LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
LSGGQ++ +++A LL +P I+ LDEPT+ +D + L+
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA 649
Query: 217 QGTMIICTLHQPSASLLNMADYLYVLTEG 245
T+++ T H+ SLL++ D + V+ G
Sbjct: 650 GKTLVLVT-HRT--SLLDLVDRIIVMDNG 675
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 74.1 bits (182), Expect = 5e-15
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+L +++ E+ ++GPSG GK+ LL + G + + T G + +NE RL
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCT--GELWLNEQRLDMLPA 74
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
+++ + QD LL L+V ++L A L R A + ++ L + ++
Sbjct: 75 AQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSG--LDGAFHQDP 132
Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
T LSGGQ+ R+++ LL+ P + LDEP + LD
Sbjct: 133 AT--LSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 77.9 bits (192), Expect = 5e-15
Identities = 66/263 (25%), Positives = 118/263 (44%), Gaps = 40/263 (15%)
Query: 3 SEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVIL 62
SE + + + +++ D+SYS Y S IL DIS + I+
Sbjct: 456 SEFINKKKRTELNNLNGDIVINDVSYS--------YGYGSN-ILSDISLTIKMNSKTTIV 506
Query: 63 GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQE 120
G SGSGK+ L +L G+ + + SG I +N L+ D LR+ Y+ Q+ +
Sbjct: 507 GMSGSGKSTLAKLLVGFFQAR-----SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF- 560
Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST--------CKNTLTKH---L 169
S ++ +L LG + + ++ + + I + L++ +
Sbjct: 561 ------SGSILENLLLGAK--ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229
SGGQK+R+++A LL++ ++ LDE T+ LD + +V L ++ + II H+ S
Sbjct: 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK--TIIFVAHRLS 670
Query: 230 ASLLNMADYLYVLTEGYCTYQGT 252
+ +D + VL G QG+
Sbjct: 671 VA--KQSDKIIVLDHGKIIEQGS 691
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 76.2 bits (188), Expect = 7e-15
Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 30/214 (14%)
Query: 42 SKDILKDI-SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
SKDI DI G FV V +GPSG GK+ LL ++AG + SG + I E R+
Sbjct: 19 SKDINLDIHEGEFV-----VFVGPSGCGKSTLLRMIAGLE-----DITSGDLFIGEKRMN 68
Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-ESKVDSIADSLSIS 159
D + + Q L L+V E+++ LKL ++K + +V+ +A+ L ++
Sbjct: 69 DVPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAG--AKKEEINQRVNQVAEVLQLA 124
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD-------YLNATNLVKLLR 212
+ K LSGGQ++R++I L++ PS+ LDEP + LD + + L K L
Sbjct: 125 HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL- 183
Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
TMI T Q A + +AD + VL G
Sbjct: 184 ----GRTMIYVTHDQVEA--MTLADKIVVLDAGR 211
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 73.9 bits (182), Expect = 9e-15
Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 34/230 (14%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S+ ++ L D+S +LGP+G+GK+ L +L + G I +
Sbjct: 8 SFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ-----EGQISVA- 61
Query: 97 TRLQDHRMLRKESCYIM-------QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV 149
LR+ + Q L L+V ++L A L + SR +++
Sbjct: 62 -----GHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAAL---HGLSRAEARARI 113
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
+ L ++ + + L+GG ++R+ IA LL P+++ LDEPT GLD + +
Sbjct: 114 AELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITA 173
Query: 210 LLRDMA-HQGTMIICTLH-----QPSASLLNMADYLYVLTEGYCTYQGTV 253
+R +A QG ++ H + L+ VL G G
Sbjct: 174 HVRALARDQGLSVLWATHLVDEIEADDRLV-------VLHRGRVLADGAA 216
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 74.4 bits (183), Expect = 1e-14
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 8/207 (3%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
LK +S + +LGP+G+GK+ LL L G P++ E+N ++ + +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNA---ENEKWV 77
Query: 106 RKESCYIMQDNLLQEL-LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
R + + QD Q TV + + + +G + E +V+ ++ + ++
Sbjct: 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGP-VNMG--LDKDEVERRVEEALKAVRMWDFRDK 134
Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
HLS GQKKR++IA L +P +I LDEP LD L+++L + +QG +I
Sbjct: 135 PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVA 194
Query: 225 LHQPSASLLNMADYLYVLTEGYCTYQG 251
H + AD + VL EG +G
Sbjct: 195 THDVDLA-AEWADQVIVLKEGRVLAEG 220
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 73.7 bits (181), Expect = 1e-14
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 6/187 (3%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL-- 99
+ L DI+ E V+LGPSG+GK+ LL +L P+ N + ++
Sbjct: 14 AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPS 73
Query: 100 -QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
+ R LR+ + Q L LTV+E+L A LG S+ ++ + + L +
Sbjct: 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLG--LSKDQALARAEKLLKRLRL 131
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
+ HLSGGQ++R++IA L+ P ++ DEPT LD +V +++++A G
Sbjct: 132 KPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG 191
Query: 219 -TMIICT 224
T +I T
Sbjct: 192 ITQVIVT 198
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 75.1 bits (185), Expect = 1e-14
Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 24/211 (11%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET---RLQD 101
+L DIS S ++ +LGPSGSGKT LL I+AG SG+I + T RL
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-----HQTSGHIRFHGTDVSRL-- 69
Query: 102 HRMLRKESCYIMQDNLLQELLTVEES----LTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
H RK ++ Q L +TV ++ LTV L + + A ++KV + + +
Sbjct: 70 HARDRKVG-FVFQHYALFRHMTVFDNIAFGLTV---LPRRERPNAAAIKAKVTQLLEMVQ 125
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
++ + LSGGQK+R+++A L P I+ LDEP LD L + LR + H+
Sbjct: 126 LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL-HE 184
Query: 218 G---TMIICTLHQPSASLLNMADYLYVLTEG 245
T + T Q A + +AD + V+++G
Sbjct: 185 ELKFTSVFVTHDQEEA--MEVADRVVVMSQG 213
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 74.9 bits (184), Expect = 2e-14
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 17/195 (8%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S S K ++ +S S E +LGP+G+GK+ + ++ G P ++G I +
Sbjct: 48 SKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP-----DAGKITVLG 102
Query: 97 TRLQDH-RMLRKESCYIMQ-DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--VDSI 152
+ R+ R + Q DNL E TV E+L V G + +E + + S+
Sbjct: 103 VPVPARARLARARIGVVPQFDNLDLEF-TVRENLLV-----FGRYFGMSTREIEAVIPSL 156
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLL 211
+ + + + LSGG K+RL++A L+++P ++ LDEPTTGLD +A +L+ + L
Sbjct: 157 LEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD-PHARHLIWERL 215
Query: 212 RDMAHQGTMIICTLH 226
R + +G I+ T H
Sbjct: 216 RSLLARGKTILLTTH 230
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 73.5 bits (180), Expect = 2e-14
Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 24/213 (11%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI------NETRL-QDHRMLRKES 109
E+ +LGPSGSGK+ LL L+G K+ +IE+ E RL +D R R +
Sbjct: 31 EMVALLGPSGSGKSTLLRHLSGLITGDKSA--GSHIELLGRTVQREGRLARDIRKSRANT 88
Query: 110 CYIMQDNLLQELLTVEESLTVAAHLKLGNQ---------YSRKAKESKVDSIADSLSIST 160
YI Q L L+V E++ + A LG+ ++R+ K+ + ++ + +
Sbjct: 89 GYIFQQFNLVNRLSVLENVLIGA---LGSTPFWRTCFSWFTREQKQRALQALT-RVGMVH 144
Query: 161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGT 219
+ LSGGQ++R++IA L+ +I DEP LD +A ++ LRD+ + G
Sbjct: 145 FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGI 204
Query: 220 MIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
++ TLHQ + L + + L +G+ Y G+
Sbjct: 205 TVVVTLHQVDYA-LRYCERIVALRQGHVFYDGS 236
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 74.1 bits (182), Expect = 2e-14
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 28/228 (12%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120
+LGPSG GKT LL +LAG+ +P +SG I ++ + + + + Q L
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQP-----DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFP 55
Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180
+TVEE+ VA LK+ + R + +V + + + LSGGQ++R+++A
Sbjct: 56 HMTVEEN--VAFGLKM-RKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALA 112
Query: 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKL----LRDMAHQ-G-TMIICTLHQPSASLLN 234
L+ P I+ LDEP + LD L L+ + Q G T + T Q A +
Sbjct: 113 RALVFKPKILLLDEPLSALDK----KLRDQMQLELKTIQEQLGITFVFVTHDQEEA--MT 166
Query: 235 MADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSL 282
M+D + ++ +G GT + Y+ P+N A ++ E+++
Sbjct: 167 MSDRIAIMRKGKIAQIGTPEEI--------YEEPANLFVARFIGEINV 206
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 72.7 bits (179), Expect = 2e-14
Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 16/189 (8%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--------NE 96
L DI+ E V+LGPSG+GK+ LL +L P+ SG + I
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-----SGTLNIAGNHFDFSKT 71
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
+ R LR+ + Q L LTV+++L A LG S+ ++ + + + L
Sbjct: 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG--LSKDQALARAEKLLERL 129
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
+ + HLSGGQ++R++IA L+ P ++ DEPT LD +V ++R++A
Sbjct: 130 RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE 189
Query: 217 QG-TMIICT 224
G T +I T
Sbjct: 190 TGITQVIVT 198
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 73.0 bits (180), Expect = 2e-14
Identities = 61/238 (25%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRL 99
K+ILK ++ E+ I+GP+GSGK+ L + G PK T G I + L
Sbjct: 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVT-EGEILFDGEDILEL 73
Query: 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI- 158
R Q + +T + L A + + G + ++ A+ L +
Sbjct: 74 SPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD 133
Query: 159 -STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAH 216
+ + + SGG+KKR I LL P + LDEP +GLD ++A +V + + +
Sbjct: 134 EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD-IDALKIVAEGINALRE 192
Query: 217 QGTMIICTLHQPSASLLN--MADYLYVLTEGYCTYQGTV-----PGLVPYLSDFGYQC 267
+G ++ H LL+ D ++VL Y G + P L L + GY
Sbjct: 193 EGRGVLIITHYQ--RLLDYIKPDKVHVL------YDGRIVKSGDPELAEELEEKGYDW 242
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 74.0 bits (182), Expect = 3e-14
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETR 98
+S + ++DIS E+ LG +G+GK+ L +L G P SG + +N +
Sbjct: 35 RSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT-----SGKVRVNGKDPF 89
Query: 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
+ LR + Q L L +SL V + + ++D + + L +
Sbjct: 90 RRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDL 146
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQ 217
+ LS GQ+ R +A LL P ++FLDEPT GLD N+ + L++ +
Sbjct: 147 EGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257
++ T H + + D + ++ +G + GT+ L
Sbjct: 207 QATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 74.6 bits (184), Expect = 4e-14
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 31/210 (14%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHR 103
L+ +S E ++GPSG+GK+ LL++L G+ P G I +N L D
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-----TEGSIAVNGVPLADADAD 392
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
R + ++ Q L T+A +++L A ++++ + +
Sbjct: 393 SWRDQIAWVPQHPFLFA-------GTIAENIRLA---RPDASDAEIREALERAGLDEFVA 442
Query: 164 TL-----TK------HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
L T LSGGQ +RL++A L + ++ LDEPT LD +++ LR
Sbjct: 443 ALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALR 502
Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVL 242
+A T+++ T H+ +L +AD + VL
Sbjct: 503 ALAQGRTVLLVT-HRL--ALAALADRIVVL 529
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 72.0 bits (177), Expect = 4e-14
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
K L+DI+ S EL V+LGPSG GKT LL+++AG+ + G I ++ ++
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-----HGSITLDGKPVEGP 68
Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
E + Q+ L V+++ VA L+L + + + + + +
Sbjct: 69 ---GAERGVVFQNEGLLPWRNVQDN--VAFGLQLAG-VEKMQRLEIAHQMLKKVGLEGAE 122
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN----ATNLVKLLRDMAHQG 218
LSGGQ++R+ IA L +NP ++ LDEP LD T L+KL ++ Q
Sbjct: 123 KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV 182
Query: 219 TMI 221
+I
Sbjct: 183 LLI 185
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 71.7 bits (176), Expect = 6e-14
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 11/198 (5%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
+ +L I E+ I+GPSGSGKT LL + +P+ G I I+ R
Sbjct: 12 KFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR 71
Query: 99 LQDH-----RMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
R LR+ ++ Q+ NL +E + +K ++ ++ +
Sbjct: 72 SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK---GEPKEEATARAREL 128
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
+ ++ + + + LSGGQ++R++IA L P +I DEPT+ LD ++ +R
Sbjct: 129 LAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR 188
Query: 213 DMAHQG-TMIICTLHQPS 229
+A + TM+I T H+ S
Sbjct: 189 QLAQEKRTMVIVT-HEMS 205
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 71.1 bits (175), Expect = 7e-14
Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 34/240 (14%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
F+++++S YD + K +LKDI+ E I+GP+G+GKT L+++L + P
Sbjct: 5 FENVNFS---YD------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP 55
Query: 83 KKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
+K G I I+ ++D + LR ++QD L S T+ +++LG
Sbjct: 56 QK-----GQILIDGIDIRDISRKSLRSMIGVVLQDTFLF-------SGTIMENIRLGRPN 103
Query: 141 SRK------AKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFL 192
+ AKE+ L T +LS G+++ L+IA +L +P I+ L
Sbjct: 104 ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163
Query: 193 DEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
DE T+ +D + + L + T II H+ S ++ N AD + VL +G +GT
Sbjct: 164 DEATSNIDTETEKLIQEALEKLMKGRTSIIIA-HRLS-TIKN-ADKILVLDDGKIIEEGT 220
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 70.5 bits (173), Expect = 1e-13
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 27/199 (13%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-------T 97
+LK++S + E + GPSG+GK+ LL L P +SG I +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-----DSGRILVRHEGAWVDLA 77
Query: 98 RLQDHRML---RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
+ +L RK Y+ Q L+ + V +L V A L R+A ++ +
Sbjct: 78 QASPREVLEVRRKTIGYVSQ--FLRVIPRVS-ALEVVAEPLLERGVPREAARARARELLA 134
Query: 155 SLSI-----STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
L+I T SGG+++R++IA +++ I+ LDEPT LD N +V+
Sbjct: 135 RLNIPERLWHLPPATF----SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE 190
Query: 210 LLRDMAHQGTMIICTLHQP 228
L+ + +G +I H
Sbjct: 191 LIAEAKARGAALIGIFHDE 209
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 74.7 bits (183), Expect = 1e-13
Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 11/198 (5%)
Query: 53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYI 112
F +++ LG +G+GKT L IL G P G +I ET L +R+
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLD---AVRQSLGMC 1008
Query: 113 MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG 172
Q N+L LTV E + A LK S + + +++++ + + +N + LSGG
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGG 1065
Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL 232
+++LS+A+ + + ++ LDEPT+G+D + ++ LL T+I+ T H A L
Sbjct: 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADL 1125
Query: 233 LNMADYLYVLTEG--YCT 248
L D + ++++G YC+
Sbjct: 1126 L--GDRIAIISQGRLYCS 1141
Score = 59.3 bits (143), Expect = 5e-09
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-NETRLQDHRMLRKESCYIMQDNLLQ 119
+LG +G+GKT +L G T SG + ++ L + + + Y Q + +
Sbjct: 1970 LLGVNGAGKTTTFKMLTG-----DTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAID 2024
Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD----SLSISTCKNTLTKHLSGGQKK 175
+LLT E L + A L R +++ +A+ SL +S + L SGG K+
Sbjct: 2025 DLLTGREHLYLYARL-------RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKR 2077
Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
+LS A+ L+ P ++ LDEPTTG+D L + + +G ++ T H
Sbjct: 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 70.8 bits (173), Expect = 1e-13
Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 17/245 (6%)
Query: 40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG----YRRPKKTETNSGYIEIN 95
I K ILKDI+ + + I+GPSGSGK+ LL +L Y K + Y +
Sbjct: 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKD 79
Query: 96 ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLT--VAAHLKLGNQYSRKAKESKVDSIA 153
++ D LRKE + Q L++ +++ + +H + +K E + +
Sbjct: 80 IFQI-DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVG 138
Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
+ N+ LSGGQ++RL+IA L P ++ +DEPT+ +D +N+ + KL+ +
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198
Query: 214 MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNP 273
+ ++ ++I + H P + +ADY+ L G G+ S+ + P N
Sbjct: 199 LKNEIAIVIVS-HNPQ-QVARVADYVAFLYNGELVEWGS--------SNEIFTSPKNELT 248
Query: 274 ADYVI 278
YVI
Sbjct: 249 EKYVI 253
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 71.9 bits (176), Expect = 1e-13
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 15/194 (7%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-N 95
S S K ++ D+S E +LGP+G+GK+ + +L G P + G I +
Sbjct: 11 SKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP-----DRGKITVLG 65
Query: 96 ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK--ESKVDSIA 153
E R+ R + Q + L TV E+L V G + + E+ + S+
Sbjct: 66 EPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLV-----FGRYFGMSTREIEAVIPSLL 120
Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLR 212
+ + + + LSGG K+RL++A L+++P ++ LDEPTTGLD +A +L+ + LR
Sbjct: 121 EFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD-PHARHLIWERLR 179
Query: 213 DMAHQGTMIICTLH 226
+ +G I+ T H
Sbjct: 180 SLLARGKTILLTTH 193
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 70.5 bits (173), Expect = 1e-13
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 26/193 (13%)
Query: 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET-NSGY-----IEINET 97
+L +I E+ VI+GPSGSGK+ LL R K E SG +++N+
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLL------RCINKLEEITSGDLIVDGLKVNDP 68
Query: 98 RLQDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
++ D R++R+E+ + Q L L +E V G R A + + + A L
Sbjct: 69 KV-DERLIRQEAGMVFQQFYLFPHLTALE---NVM----FGPLRVRGASKEEAEKQAREL 120
Query: 157 ----SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
++ + LSGGQ++R++IA L P ++ DEPT+ LD ++K+++
Sbjct: 121 LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQ 180
Query: 213 DMAHQG-TMIICT 224
D+A +G TM+I T
Sbjct: 181 DLAEEGMTMVIVT 193
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 73.4 bits (181), Expect = 1e-13
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 48/215 (22%)
Query: 37 SYSIKSKDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTETNS 89
S + + +L+++S L++ ++G +G+GK+ LL ILAG P +S
Sbjct: 10 SLAYGDRPLLENVS-------LTLNPGERIGLVGRNGAGKSTLLKILAGELEP-----DS 57
Query: 90 GYIEIN----------ETRLQDHRMLRKESCYIMQDN-----LLQELLTVEESLTVAAHL 134
G + E L + + Y+++ LL EL L
Sbjct: 58 GEVTRPKGLRVGYLSQEPPLDPEKTVLD---YVIEGFGELRELLAELEEAYALLADPDDE 114
Query: 135 KLGNQYSRKAK------ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPS 188
L + + E++ + L ++ LSGG ++R+++A LL P
Sbjct: 115 LLAELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSSLSGGWRRRVALARALLEEPD 173
Query: 189 IIFLDEPTTGLDYLNATN-LVKLLRDMAHQGTMII 222
++ LDEPT LD L + L L+ + GT+I+
Sbjct: 174 LLLLDEPTNHLD-LESIEWLEDYLKR--YPGTVIV 205
Score = 70.4 bits (173), Expect = 1e-12
Identities = 54/225 (24%), Positives = 87/225 (38%), Gaps = 31/225 (13%)
Query: 5 EAELQDLKKSPRKHFNLLFQDISYSALYYDTH-----SYSI-KSKDILKDISGVFVSKEL 58
EA L + + L S + +LKD+S +
Sbjct: 291 EARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDR 350
Query: 59 SVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLL 118
I+GP+G+GK+ LL +LAG + SG +++ ET + Y Q
Sbjct: 351 IAIVGPNGAGKSTLLKLLAG-----ELGPLSGTVKVGET---------VKIGYFDQHR-- 394
Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-NTLTKHLSGGQKKRL 177
++ TV L + E +V + + LSGG+K RL
Sbjct: 395 ---DELDPDKTVLEELS---EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARL 448
Query: 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
+A LL P+++ LDEPT LD + L + L D +GT+++
Sbjct: 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLL 491
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 70.6 bits (174), Expect = 1e-13
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 71/228 (31%)
Query: 31 LYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPK 83
LYY K LKDI+ +++ ++GPSG GK+ LL D++ G R
Sbjct: 15 LYYGD-------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV-- 65
Query: 84 KTETNSGYIEINETRLQDHRM----LRKE-------------SCYI----------MQDN 116
G + ++ + D ++ LR+ S Y ++D
Sbjct: 66 -----EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDK 120
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
L E+ VE SL AA D + D L K+ L LSGGQ++R
Sbjct: 121 ELDEI--VESSLKKAALW---------------DEVKDRLH----KSALG--LSGGQQQR 157
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
L IA L P ++ +DEPT+ LD ++ + +L+ ++ + T++I T
Sbjct: 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVT 205
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 70.9 bits (173), Expect = 2e-13
Identities = 63/232 (27%), Positives = 102/232 (43%), Gaps = 11/232 (4%)
Query: 26 ISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT 85
I + + Y S + L DI + ++G +GSGK+ LL L G +P +
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 86 ETNSGYIEINETRLQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
+ G I ++ T Q + +RK+ + Q E EE TV + G Q
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ---FPESQLFEE--TVLKDVAFGPQNFGIP 116
Query: 145 KESKVDSIADSLSISTCKNTLTK----HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
KE A+ L + + + LSGGQ +R++IA L P ++ LDEPT GLD
Sbjct: 117 KEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 201 YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+++L + G ++ H + + ADY+Y+L +G+ GT
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGT 227
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 69.9 bits (172), Expect = 2e-13
Identities = 45/171 (26%), Positives = 88/171 (51%), Gaps = 7/171 (4%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
EL VI+GP+G+GKT ++D++ G RP + G ++ T L +H++ R Q
Sbjct: 29 ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL--TGLPEHQIARAGIGRKFQKP 86
Query: 117 LLQELLTVEESLTVAAH-----LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
+ E LTV E+L +A ++ +++ + +++ ++ + L LS
Sbjct: 87 TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSH 146
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
GQK+ L I + L+ +P ++ LDEP G+ +LL+ +A + ++++
Sbjct: 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVV 197
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 70.2 bits (172), Expect = 3e-13
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 10/224 (4%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET---NSGYIE 93
S++ ++ I +IS +++ I+GPSG GKT LL ++ G P E
Sbjct: 14 SFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPA 73
Query: 94 INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
++ +RL +RK + Q L + V ++ VA L+ Q S V
Sbjct: 74 MSRSRLYT---VRKRMSMLFQSGALFTDMNVFDN--VAYPLREHTQLPAPLLHSTVMMKL 128
Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
+++ + + LSGG +R ++A + P +I DEP G D + LVKL+ +
Sbjct: 129 EAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE 188
Query: 214 MAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256
+ G + H +L++AD+ Y++ + G+ L
Sbjct: 189 LNSALGVTCVVVSHD-VPEVLSIADHAYIVADKKIVAHGSAQAL 231
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 68.9 bits (169), Expect = 3e-13
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 35 THSYSIKSKD--ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
Y D +LK +S E+ I+G SGSGK+ LL +L G P SG +
Sbjct: 8 GKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-----TSGEV 62
Query: 93 EINETRLQ-----DHRMLRKESC-YIMQ-DNLLQELLTVEESLTVAAHLKLGNQYSRKAK 145
N L + LR + +I Q +LL + +E VA L +G + S K
Sbjct: 63 LFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALE---NVAMPLLIGKK-SVKEA 118
Query: 146 ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
+ + + + + + N LSGG+++R++IA L++ PS++ DEPT LD NA
Sbjct: 119 KERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178
Query: 206 NLVKLLRDM-AHQGTMIICTLHQP 228
+ L+ ++ T + H
Sbjct: 179 IIFDLMLELNRELNTSFLVVTHDL 202
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 69.7 bits (170), Expect = 4e-13
Identities = 65/258 (25%), Positives = 117/258 (45%), Gaps = 44/258 (17%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKT----ETNSGY 91
K +L +S F ++ ++ ++GP+GSGKT L D ++GYR + Y
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 92 IEINETRLQDHRMLRKESCYIMQ--DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV 149
++ E R + + ++ + + M DN+L V AH + + R ++++
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLA---------GVRAHKLVPRKEFRGVAQARL 144
Query: 150 ------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
D++ D LS S + LSGGQ++ L +A L NP ++ LDEPT+ LD
Sbjct: 145 TEVGLWDAVKDRLSDSPFR------LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTT 198
Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
+ + +R +A + T+II T + A+ ++D + +G +G L
Sbjct: 199 TEKIEEFIRSLADRLTVIIVTHNLAQAA--RISDRAALFFDGRLVEEGPTEQL------- 249
Query: 264 GYQCPSNYNPADYVIEVS 281
+ P + A YV +S
Sbjct: 250 -FSSPKHAETARYVAGLS 266
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 68.4 bits (167), Expect = 6e-13
Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
E+ ++G +G+GKT LL L G P+ T + + T Q +++R+ + +
Sbjct: 32 EIVTLIGANGAGKTTLLGTLCG--DPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGR 89
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
+ +TVEE+L + +Q+ + K V + L + T +SGG+++
Sbjct: 90 RVFSRMTVEENLAMGGFFAERDQFQERIK--WVYELFPRLHERRIQRAGT--MSGGEQQM 145
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
L+I L+S P ++ LDEP+ GL + + + + QG M I + Q + L +A
Sbjct: 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG-MTIFLVEQNANQALKLA 204
Query: 237 DYLYVLTEGYCTYQGT 252
D YVL G+ + T
Sbjct: 205 DRGYVLENGHVVLEDT 220
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 68.5 bits (168), Expect = 7e-13
Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 14/212 (6%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHR 103
+ +++ E V++GPSGSGKT + ++ + E SG I I+ + R QD
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN-----RLIEPTSGEIFIDGEDIREQDPV 71
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD--SLSISTC 161
LR++ Y++Q L +TVEE+ +A KL ++ ++ + D + L +
Sbjct: 72 ELRRKIGYVIQQIGLFPHMTVEEN--IALVPKL-LKWPKEKIRERADELLALVGLDPAEF 128
Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTM 220
+ LSGGQ++R+ +A L ++P ++ +DEP LD + L + + + + G
Sbjct: 129 ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKT 188
Query: 221 IICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
I+ H + +AD + ++ G GT
Sbjct: 189 IVFVTHDIDEAFR-LADRIAIMKNGEIVQVGT 219
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 68.3 bits (167), Expect = 7e-13
Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 21/196 (10%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
SYS K+ILKDIS F + I+GPSG+GK+ L+ ++ P TE G I I+
Sbjct: 10 SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TE---GSILIDG 64
Query: 97 TRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
++ + LR++ + Q L E TV++++ LK E VD
Sbjct: 65 VDIKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLK---------GEKNVDVEYY 114
Query: 155 SLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+ K T+ +LSGG+ +R+SIA L +NP ++ LDEPT+ LD + + +L+
Sbjct: 115 LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174
Query: 212 RDMAHQ-GTMIICTLH 226
+ ++ +I H
Sbjct: 175 VKLKNKMNLTVIWITH 190
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 68.3 bits (167), Expect = 8e-13
Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 14/207 (6%)
Query: 34 DTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
D Y K K L +S F E++ ++GPSGSGK+ LL + T +G I
Sbjct: 10 DLSVYYNK-KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV 68
Query: 94 INETRLQDHRM----LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK 148
N + R LRKE + Q N +++ E+ V L+L ++ +
Sbjct: 69 YNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP--MSIYEN--VVYGLRLKGIKDKQVLDEA 124
Query: 149 VDSIADSLSI-STCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
V+ SI K+ L LSGGQ++R+ IA L ++P II LDEPT+ LD ++A
Sbjct: 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184
Query: 205 TNLVKLLRDMAHQGTMIICTLHQPSAS 231
+ + L + TM++ T AS
Sbjct: 185 GKIEETLLGLKDDYTMLLVTRSMQQAS 211
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 70.9 bits (174), Expect = 8e-13
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 6/187 (3%)
Query: 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR 103
++LK IS + E+ I+G SGSGK+ L++IL +P ++
Sbjct: 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81
Query: 104 MLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
LR+E +I Q L LT +++ V A + G RK + + + L +
Sbjct: 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPA-VYAGL--ERKQRLLRAQELLQRLGLEDRV 138
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMI 221
LSGGQ++R+SIA L++ +I DEPT LD + ++ +L + +G T+I
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVI 198
Query: 222 ICTLHQP 228
I T H P
Sbjct: 199 IVT-HDP 204
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 68.9 bits (169), Expect = 8e-13
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 13/226 (5%)
Query: 29 SALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN 88
AL + + S K + +IS E+ +LGP+G+GKT ++ G P
Sbjct: 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-----T 55
Query: 89 SGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK 148
G I N L ++ Y+ ++ L +TVE+ L A LK + + K
Sbjct: 56 EGEITWNGGPLSQE--IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKK 110
Query: 149 VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
+ + + L I K K LS G ++++ ++ P ++ LDEP +GLD +N L
Sbjct: 111 LQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170
Query: 209 KLLRDMAHQGTMIICTLHQPS-ASLLNMADYLYVLTEGYCTYQGTV 253
+ ++ +G II + H+ L D L +L +G GTV
Sbjct: 171 DAIFELKEEGATIIFSSHRMEHVEEL--CDRLLMLKKGQTVLYGTV 214
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 68.5 bits (168), Expect = 9e-13
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL-- 99
K L +S + ++G +G+GK+ LL+ +AG +P SG I I+ +
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-----TSGQILIDGVDVTK 72
Query: 100 --QDHRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
R + QD L LT+EE+L +A S E + S +
Sbjct: 73 KSVAKRANLLARVF--QDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER 130
Query: 156 LSISTCKNTLTKHL-------SGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
L+ L L SGGQ++ LS+ + L P I+ LDE T LD
Sbjct: 131 LARL--GLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 67.6 bits (166), Expect = 1e-12
Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 33/225 (14%)
Query: 45 ILKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQ 100
IL+ +S + V K E++ +LG +G GKT LL L G K SG I ++ T+L
Sbjct: 15 ILRGVS-LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK-----SGSIRLDGEDITKLP 68
Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESL-TVAAHLKLGNQYSRKAKESKV-DSIADSLSI 158
H R Y+ Q + LTVEE+L T A + + K+ D I + +
Sbjct: 69 PHERARAGIAYVPQGREIFPRLTVEENLLTGLA--------ALPRRSRKIPDEIYELFPV 120
Query: 159 STCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK----LL 211
K L + LSGGQ+++L+IA L++ P ++ LDEPT G+ +++K ++
Sbjct: 121 --LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQ----PSIIKDIGRVI 174
Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256
R + +G M I + Q +AD YV+ G G L
Sbjct: 175 RRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 66.3 bits (163), Expect = 1e-12
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 67/219 (30%)
Query: 43 KDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95
K ++D+S V I G G+G+T+L + L G R P SG I ++
Sbjct: 13 KGAVRDVS-------FEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-----SGEITLD 60
Query: 96 E---TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
TR +R Y+ +D + L+ S+
Sbjct: 61 GKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL-------------------------SV 95
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLL 211
A+++ L+ LSGG ++++ +A L +P ++ LDEPT G+D + A + +L+
Sbjct: 96 AENI-------ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVD-VGAKAEIYRLI 147
Query: 212 RDMAHQGTMIICTLHQPSAS-----LLNMADYLYVLTEG 245
R++A G ++ S LL + D + V+ EG
Sbjct: 148 RELADAGKAVLL------ISSELDELLGLCDRILVMYEG 180
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 70.5 bits (173), Expect = 1e-12
Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 24/213 (11%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQ 100
K L+ IS + E I+GPSGSGK+ L ++ G P SG + ++ + +
Sbjct: 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT-----SGSVRLDGADLKQW 385
Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL-KLG-NQYSRKAKESKVDSIADSLSI 158
D K Y+ QD EL TVA ++ + G N K E+ + L +
Sbjct: 386 DRETFGKHIGYLPQD---VELF----PGTVAENIARFGENADPEKIIEAAKLAGVHELIL 438
Query: 159 STCKNTLT------KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
T LSGGQ++R+++A L +P ++ LDEP + LD L ++
Sbjct: 439 RLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
+ +G ++ H+P SLL D + VL +G
Sbjct: 499 ALKARGITVVVITHRP--SLLGCVDKILVLQDG 529
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 67.7 bits (165), Expect = 1e-12
Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 22/223 (9%)
Query: 40 IKSKDI---------LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
I +KD+ L IS F KEL+ ++GPSG GK+ L L + +G
Sbjct: 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITG 64
Query: 91 YIEINETRLQDHRM----LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE 146
I+ + +M LRKE + Q + VA LK+ ++ +
Sbjct: 65 EIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYD---NVAYGLKIAGVKDKELID 121
Query: 147 SKVD-SIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
+V+ S+ + K+ L ++ SGGQ++R+ IA L P ++ LDEPT+ LD +
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
+++ + + L ++ HQ T I+ T + A ++D L G
Sbjct: 182 SSSEIEETLMELKHQYTFIMVTHNLQQAG--RISDQTAFLMNG 222
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 67.7 bits (166), Expect = 1e-12
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 30/217 (13%)
Query: 56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ---DHRMLRKESCYI 112
+E+ ++GP+G+GKT + + L G+ +P G I + ++ H++ R
Sbjct: 31 QEIVSLIGPNGAGKTTVFNCLTGFYKP-----TGGTILLRGQHIEGLPGHQIARMGVVRT 85
Query: 113 MQDNLLQELLTVEESLTVAAHLKLGNQY---------SRKAKESKVDSIA---DSLSIST 160
Q L +TV E+L VA H +L R+A+ +D A + + +
Sbjct: 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE 145
Query: 161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL-----DYLNATNLVKLLRDMA 215
N +L+ GQ++RL IA +++ P I+ LDEP GL L+ L+ LR+
Sbjct: 146 HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE--LIAELRN-- 201
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
++ H ++ ++D +YV+ +G GT
Sbjct: 202 EHNVTVLLIEHDMKL-VMGISDRIYVVNQGTPLANGT 237
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 67.5 bits (165), Expect = 3e-12
Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 11/212 (5%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-NETRLQDHRM 104
L D++ + +G +GSGK+ ++ +L G P + I + ++ +D +
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
+RK+ + Q E EE TV + G Q ++E + L++ +
Sbjct: 83 IRKKVGLVFQ---FPESQLFEE--TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES 137
Query: 165 LTK----HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220
L + LSGGQ +R++IA L P I+ LDEPT GLD L+ L + + HQ M
Sbjct: 138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGM 196
Query: 221 IICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
I + + N AD++YVL +G G
Sbjct: 197 TIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 66.9 bits (163), Expect = 3e-12
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 14/206 (6%)
Query: 34 DTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
D H + K + LK I F E++ ++GPSG GK+ L L T +G +
Sbjct: 10 DVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS 68
Query: 94 INETRL----QDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK 148
+ + +D LRK+ + Q N ++ E++ L G + E+
Sbjct: 69 LRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP--FSIYENVIYGLRLA-GVKDKAVLDEAV 125
Query: 149 VDSIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
S+ + K+ L + LSGGQ++R+ IA L P +I LDEPT+ LD +++T
Sbjct: 126 ETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISST 185
Query: 206 NLVKLLRDMAHQGTMIICT--LHQPS 229
+ +L ++ Q T+I+ T +HQ S
Sbjct: 186 QIENMLLELRDQYTIILVTHSMHQAS 211
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 65.2 bits (160), Expect = 4e-12
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 42/213 (19%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN- 95
S+ K+ILK ++ E+ ++GP+GSGK+ L + G + Y
Sbjct: 7 HVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG---------HPKYEVTEG 57
Query: 96 ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
E + ++ L EE + L QY + V AD
Sbjct: 58 EILFKGE-------------DITD--LPPEER--ARLGIFLAFQYP--PEIPGV-KNADF 97
Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
L + + SGG+KKR I LL P + LDEP +GLD + +++ +
Sbjct: 98 L------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR 151
Query: 216 HQGT-MIICTLHQPSASLLNM--ADYLYVLTEG 245
+G ++I T +Q LL+ D ++VL +G
Sbjct: 152 EEGKSVLIITHYQ---RLLDYIKPDRVHVLYDG 181
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 66.3 bits (162), Expect = 5e-12
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 11/200 (5%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTET-----NSGYIEINETRLQDHRMLRKESCYIMQD 115
I+G SGSGKT LL ++G P + ++ + R L + +
Sbjct: 37 IVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96
Query: 116 NLLQEL-LTVEESLTVAAHL-KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173
N L + V + L +G ++ + D + + + L + SGG
Sbjct: 97 NPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM 156
Query: 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH--QGTMIICTLHQPSAS 231
++RL IA L++ P ++F+DEPT GLD L+ LLR + ++I T A
Sbjct: 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216
Query: 232 LLNMADYLYVLTEGYCTYQG 251
LL AD L V+ +G G
Sbjct: 217 LL--ADRLMVMKQGQVVESG 234
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 65.3 bits (159), Expect = 6e-12
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
EL +LGP+G+GKT LL + G P K G +++ + Y+ Q +
Sbjct: 7 ELLGLLGPNGAGKTTLLRAILGLIPPAK-----GTVKVAG---ASPGKGWRHIGYVPQRH 58
Query: 117 LLQELLTVEESLTV----AAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG 172
+ + TV H+ + A + V + ++ + LSGG
Sbjct: 59 EFAWDFPISVAHTVMSGRTGHIGWLRR-PCVADFAAVRDALRRVGLTELADRPVGELSGG 117
Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
Q++R+ +A L + PS++ LDEP TGLD L +L ++A GT I+ T H
Sbjct: 118 QRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 66.4 bits (162), Expect = 8e-12
Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 20/228 (8%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPK-------------KTETNSGY 91
L +IS F ++ I+G SGSGK+ L+ G + K K +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 92 IEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
++++ + LR+ + Q Q E + + LG + S K +K
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYL 160
Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
L S + + LSGGQK+R++IA L P I+ DEPT GLD +++L+
Sbjct: 161 NKMGLDDSYLERS-PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI 219
Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPY 259
D + H +L +AD + V+ +G GT PY
Sbjct: 220 LDAKANNKTVFVITHT-MEHVLEVADEVIVMDKGKILKTGT-----PY 261
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 65.4 bits (160), Expect = 8e-12
Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 39/204 (19%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYI--- 92
K+ LK+I+ +++ ++GPSG GK+ LL D++ G R G +
Sbjct: 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI-------EGKVLFD 66
Query: 93 --EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV- 149
+I + ++ + R+ + N +++ ++ +A +L +K + V
Sbjct: 67 GQDIYDKKIDVVELRRRVGMVFQKPNPF--PMSIYDN--IAYGPRLHGIKDKKELDEIVE 122
Query: 150 ---------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
D + D L + L LSGGQ++RL IA L P ++ LDEPT+ LD
Sbjct: 123 ESLKKAALWDEVKDRLH----DSALG--LSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
Query: 201 YLNATNLVKLLRDMAHQGTMIICT 224
+ + +L++++ + T++I T
Sbjct: 177 PIATGKIEELIQELKKKYTIVIVT 200
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 64.8 bits (158), Expect = 1e-11
Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 17/212 (8%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD---H 102
LK ++ E ++G SG GK+ LL++++G +P SG + + ++ +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-----TSGGVILEGKQITEPGPD 55
Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
RM+ + Q+ L LTV E++ +A L S+ + + V+ + ++
Sbjct: 56 RMV------VFQNYSLLPWLTVRENIALAVDRVL-PDLSKSERRAIVEEHIALVGLTEAA 108
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGTMI 221
+ LSGG K+R++IA L P ++ LDEP LD L NL +L++ +
Sbjct: 109 DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 222 ICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+ H +LL ++D + +LT G G +
Sbjct: 169 LMVTHDVDEALL-LSDRVVMLTNGPAANIGQI 199
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 65.4 bits (159), Expect = 1e-11
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 12/192 (6%)
Query: 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH- 102
++LK +S + ++ I+G SGSGK+ L + +P + IN R +D
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 103 ---------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
R+LR + Q L +TV E++ A LG +A+E V +A
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQ-EARERAVKYLA 137
Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
+ HLSGGQ++R+SIA L P ++ DEPT+ LD ++++++
Sbjct: 138 KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ 197
Query: 214 MAHQG-TMIICT 224
+A +G TM++ T
Sbjct: 198 LAEEGKTMVVVT 209
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 66.0 bits (161), Expect = 1e-11
Identities = 66/207 (31%), Positives = 102/207 (49%), Gaps = 28/207 (13%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-NETRLQDHRMLRKESCYIMQ-DNLL 118
+LGP+G+GKT L +L G P ++G I + E R R+ + Q DNL
Sbjct: 38 LLGPNGAGKTTTLRMLLGLTHP-----DAGSISLCGEPVPSRARHARQRVGVVPQFDNLD 92
Query: 119 QELLTVEESLTV-AAHLKLGNQYSRKA-----KESKVDSIADSLSISTCKNTLTKHLSGG 172
+ TV E+L V + L +R + +K+++ AD+ LSGG
Sbjct: 93 PDF-TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAK---------VGELSGG 142
Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGTMIICTLH-QPSA 230
K+RL++A L+++P ++ LDEPTTGLD A +L+ + LR + +G I+ T H A
Sbjct: 143 MKRRLTLARALVNDPDVLVLDEPTTGLD-PQARHLMWERLRSLLARGKTILLTTHFMEEA 201
Query: 231 SLLNMADYLYVLTEGYCTYQGTVPGLV 257
L D L V+ EG +G L+
Sbjct: 202 ERL--CDRLCVIEEGRKIAEGAPHALI 226
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 65.6 bits (160), Expect = 1e-11
Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 19/169 (11%)
Query: 62 LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR-LQDHRMLRKESCYIMQDNLLQE 120
LGP+G+GK+ + I+ GY P +SG +++ LQ+ + +++ Y+ + N L
Sbjct: 34 LGPNGAGKSTTMKIITGYLPP-----DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYL 88
Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH-----LSGGQKK 175
+ V E L A + + + +V+ + I +H LS G ++
Sbjct: 89 DMYVREYLQFIAGI---YGMKGQLLKQRVEEM-----IELVGLRPEQHKKIGQLSKGYRQ 140
Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
R+ +A L+ +P ++ LDEPTTGLD + +++++ T+I+ T
Sbjct: 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILST 189
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 65.0 bits (158), Expect = 1e-11
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 16/201 (7%)
Query: 58 LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC----YIM 113
+ I+GP+G GK+ LL L+ P G++ ++ +Q KE +
Sbjct: 35 FTAIIGPNGCGKSTLLRTLSRLMTPA-----HGHVWLDGEHIQ--HYASKEVARRIGLLA 87
Query: 114 QDNLLQELLTVEESLTVA--AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
Q+ +TV+E + H L ++ RK E V + I+ + LSG
Sbjct: 88 QNATTPGDITVQELVARGRYPHQPLFTRW-RKEDEEAVTKAMQATGITHLADQSVDTLSG 146
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSA 230
GQ++R IA+ L +I+ LDEPTT LD + +L++LL ++ +G + LH +
Sbjct: 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQ 206
Query: 231 SLLNMADYLYVLTEGYCTYQG 251
+ A +L L EG QG
Sbjct: 207 A-CRYASHLIALREGKIVAQG 226
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 64.1 bits (156), Expect = 1e-11
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (7%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
E ++ G +G+GKT LL +LAG SG I+I+ R + M
Sbjct: 38 EALLVQGDNGAGKTTLLRVLAGLLHV-----ESGQIQID-----GKTATRGDRSRFMA-- 85
Query: 117 LLQELLTVEESLTVAAHLK-LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175
L L ++ L+ +L L + R+AK+ ++A + ++ ++TL + LS GQKK
Sbjct: 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALA-IVGLAGYEDTLVRQLSAGQKK 144
Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL 232
RL++A LS + LDEP LD T + +++ G + T H A+
Sbjct: 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP 201
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 64.6 bits (157), Expect = 2e-11
Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 5/220 (2%)
Query: 38 YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
+ + + +LK ++ F ++ ++G +G GK+ L L+G RP+K ++ +
Sbjct: 9 FRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYS 68
Query: 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
+ + LR++ + QD Q T +S + LG + + +VD +
Sbjct: 69 K-RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR--RVDEALTLVD 125
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
++ + LS GQKKR++IA L+ + LDEPT GLD T ++ ++R + Q
Sbjct: 126 AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ 185
Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257
G +I + H + ++D +YVL +G G PG V
Sbjct: 186 GNHVIISSHDIDL-IYEISDAVYVLRQGQILTHGA-PGEV 223
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 64.5 bits (157), Expect = 2e-11
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 9/213 (4%)
Query: 47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET-----NSGYIEINETRLQD 101
+D+S E+ I+G SGSGK+ LL LAG P + +E+ + +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 102 HRMLRKESCYIMQDNLLQEL-LTVEESLTVAAHL-KLGNQYSRKAKESKVDSIADSLSIS 159
R L + + N L + V + L +G ++ + + D + +
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDP 139
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-G 218
T + L + SGG ++RL IA L++ P ++F+DEPT GLD L+ LLR + G
Sbjct: 140 TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG 199
Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
+I H + L +A L V+ +G G
Sbjct: 200 LAVIIVTHDLGVARL-LAQRLLVMQQGRVVESG 231
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 66.4 bits (163), Expect = 2e-11
Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 49/229 (21%)
Query: 43 KDILKDISGVFVSKELSV----ILGPSG---SGKTKLLDILAGYRRPKKTETNSGYIEIN 95
++D+S +V ILG +G +G+T+L L G R SG I ++
Sbjct: 272 GGKVRDVS-------FTVRAGEILGIAGLVGAGRTELARALFGARPAS-----SGEILLD 319
Query: 96 ETRLQ--------DHRML-----RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR 142
++ + RK ++ ++ + + +L R
Sbjct: 320 GKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENI-----TLASLRRFSRRGLIDR 374
Query: 143 KAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201
+ + + + L I T LSGG ++++ +A L ++P ++ LDEPT G+D
Sbjct: 375 RKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID- 433
Query: 202 LNATNLV-KLLRDMAHQGTMIICTLHQPSAS----LLNMADYLYVLTEG 245
+ A + +L+R++A +G I+ +S LL ++D + V+ EG
Sbjct: 434 VGAKAEIYRLIRELAAEGKAILMI-----SSELPELLGLSDRILVMREG 477
Score = 61.0 bits (149), Expect = 8e-10
Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 23/188 (12%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
L +S E+ +LG +G+GK+ L+ IL+G P +SG I I+ +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP-----DSGEILIDGKPVA--FSS 76
Query: 106 RKESCYIMQDN----LLQELLTVEESLTVAAHLKLGNQ-------YSRKAKESKVDSIAD 154
+++ + QEL V L+VA ++ LG + RKA + +
Sbjct: 77 PRDA----LAAGIATVHQELSLVPN-LSVAENIFLGREPTRRFGLIDRKAMRRRARELLA 131
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
L + +TL LS Q++ + IA L + ++ LDEPT L L L+R +
Sbjct: 132 RLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191
Query: 215 AHQGTMII 222
QG II
Sbjct: 192 KAQGVAII 199
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 66.3 bits (162), Expect = 2e-11
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 21/219 (9%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHR 103
LK ++ E+ +LG +G+GK+ L+ +L+G P G I IN DH+
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-----TKGTITINNINYNKLDHK 75
Query: 104 MLRKESCYIMQDNLLQEL-----LTVEESLTVAAHLK---LG-NQYSRKAKESKVDSIAD 154
+ + I + QEL LTV E+L + HL G N + + +
Sbjct: 76 LAAQLGIGI----IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLL 131
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
+ + + +LS K+ L IA L+ + +I +DEPT+ L L ++ +
Sbjct: 132 RVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191
Query: 215 AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+GT I+ H+ A + + D V+ +G G V
Sbjct: 192 RKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMV 229
Score = 47.9 bits (114), Expect = 1e-05
Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 23/222 (10%)
Query: 40 IKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
+ S+D ++DIS E+ G GSG+T+L++ L G + G I +N
Sbjct: 271 VTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD-KRA----GGEIRLNGK 325
Query: 98 RLQ---DHRMLRKESCYIMQ---DNLLQELLTVEESLTVAAHLKLGNQ------YSRKAK 145
+ ++K YI + DN ++ +++ ++ LK G + +
Sbjct: 326 DISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE 385
Query: 146 ESKVDSIADSLSI--STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
+ ++ + L++ + +T+ LSGG ++++ I+ L P +I DEPT G+D
Sbjct: 386 QRTAENQRELLALKCHSVNQNITE-LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444
Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
+ K++R +A G +I+ + ++ + D + V EG
Sbjct: 445 KAEIYKVMRQLADDGKVIL-MVSSELPEIITVCDRIAVFCEG 485
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 64.1 bits (156), Expect = 2e-11
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL------------QDHRMLRKE 108
++GPSGSGK+ +L IL + G I++ +L D + LR+
Sbjct: 31 LIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQM 85
Query: 109 SCYI---MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
I Q L TV +++T A L LG +R E + + D + ++ + +
Sbjct: 86 RNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG--MARAEAEKRAMELLDMVGLADKADHM 143
Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG--TMIIC 223
LSGGQ++R++IA L P ++ DE T+ LD ++ ++R +A + TM++
Sbjct: 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLV 203
Query: 224 TLHQ 227
T H+
Sbjct: 204 T-HE 206
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 66.0 bits (162), Expect = 2e-11
Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 32/219 (14%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--- 102
+KD+S + E+ I G +G+G+++L++ ++G R+P SG I +N +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA-----SGRILLNGKDVLGRLSP 328
Query: 103 RMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQY----------SRKAKESKVDS 151
R R+ Y+ +D L+ L++A +L LG R+A
Sbjct: 329 RERRRLGLAYVPEDRHGHGLVL---DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE 385
Query: 152 IADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-K 209
+ + + + + LSGG +++L +A EL P ++ +PT GLD + A + +
Sbjct: 386 LIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD-VGAIEFIHE 444
Query: 210 LLRDMAHQGTMIICT---LHQPSASLLNMADYLYVLTEG 245
L ++ G ++ L + +L ++D + V+ EG
Sbjct: 445 RLLELRDAGKAVLLISEDLDE----ILELSDRIAVIYEG 479
Score = 62.9 bits (154), Expect = 2e-10
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 8/180 (4%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHR 103
D+S E+ +LG +G+GK+ L+ IL G +P +SG I ++ E R++ R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP-----DSGEIRVDGKEVRIKSPR 74
Query: 104 MLRKESCYIM-QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
+ ++ Q +L LTV E++ + G R+ +++ +++ +
Sbjct: 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP 134
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
+ LS G+++R+ I L ++ LDEPT L A L ++LR +A +G II
Sbjct: 135 DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTII 194
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 63.9 bits (155), Expect = 3e-11
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQ 100
K L DI+ +++ ++G SG GK+ L R K G +EI + + Q
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFN--RMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 101 DHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--VDSIADSLS 157
D LRK + Q N+ + ++ E+++ A KL K +E VD +
Sbjct: 73 DVVALRKNVGMVFQQPNVFVK--SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGL 128
Query: 158 ISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
K+ L ++ LSGGQ++RL IA L P ++ LDEPT+ LD +++ + +LL+++
Sbjct: 129 FEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL 188
Query: 215 AHQGTMIICTLHQPSASLLNMADY 238
+H +MI+ T + +ADY
Sbjct: 189 SHNLSMIMVTHNMQQGK--RVADY 210
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 63.7 bits (155), Expect = 3e-11
Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 24/215 (11%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
L +SG + E+ ++GP+G+GK+ LL +AG + SG I+ L+
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG------MTSGSGSIQFAGQPLEAWSAT 68
Query: 105 -LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
L + Y+ Q + V LT+ K + ++ +A +L++
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLHQP--------DKTRTELLNDVAGALALDDKLG 120
Query: 164 TLTKHLSGGQKKRLSIALELLS-----NPS--IIFLDEPTTGLDYLNATNLVKLLRDMAH 216
T LSGG+ +R+ +A +L NP+ ++ LDEP LD + L +LL +
Sbjct: 121 RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ 180
Query: 217 QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
QG I+ + H + + L A ++L G G
Sbjct: 181 QGLAIVMSSHDLNHT-LRHAHRAWLLKRGKLLASG 214
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 64.9 bits (158), Expect = 3e-11
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 7/210 (3%)
Query: 46 LKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
L ++S + V ++ ++G SG+GK+ L+ + RP ++ +
Sbjct: 21 LNNVS-LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 105 LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
R++ I Q NLL TV + VA L+L N + + KV + + + +
Sbjct: 80 ARRQIGMIFQHFNLLSSR-TVFGN--VALPLELDNT-PKDEIKRKVTELLALVGLGDKHD 135
Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
+ +LSGGQK+R++IA L SNP ++ DE T+ LD ++++LL+++ + + I
Sbjct: 136 SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTIL 195
Query: 224 TLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+ + + D + V++ G QGTV
Sbjct: 196 LITHEMDVVKRICDCVAVISNGELIEQGTV 225
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 63.5 bits (154), Expect = 3e-11
Identities = 51/205 (24%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
+KD+S F ++ I+GPSG GK+ +L + + +G I +++T + D +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 105 ---LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-ST 160
+R+ + Q +++ ++ V A KL + +R + V+S +++
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDN--VIAGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 161 CKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
K+ L + LSGGQ++RL IA + P +I +DEP + LD ++ + +L+ ++ +
Sbjct: 138 VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197
Query: 218 GTMIICTLH-QPSASLLNMADYLYV 241
T+II T + Q +A + + + Y+
Sbjct: 198 YTIIIVTHNMQQAARVSDYTAFFYM 222
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 65.9 bits (161), Expect = 4e-11
Identities = 59/225 (26%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 38 YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
Y+ S ++L +++ E I+GPSGSGK+ L +L P+ G + ++
Sbjct: 465 YAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH-----GQVLVDGV 519
Query: 98 RLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
L D LR++ ++Q+N+L S ++ ++ L N + +A +
Sbjct: 520 DLAIADPAWLRRQMGVVLQENVLF-------SRSIRDNIALCNPGAPFEHVIHAAKLAGA 572
Query: 156 LS-ISTCK---NT-LTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
IS NT + + LSGGQ++R++IA L+ NP I+ DE T+ LDY + +
Sbjct: 573 HDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI 632
Query: 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
++ +R++ +G +I H+ S + D + VL +G G
Sbjct: 633 MRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGR 674
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 63.9 bits (156), Expect = 4e-11
Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 22/231 (9%)
Query: 35 THSYSIKS---KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY 91
TH Y + K L +++ E ++G +GSGK+ L+ L G +P SG
Sbjct: 9 THIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-----TSGK 63
Query: 92 IEINETRLQDHRM----LRKESCYIMQ---DNLLQELLTVEESLTVA-AHLKLG-NQYSR 142
I I+ + D ++ +RK+ + Q L +E T+E+ + +L L +
Sbjct: 64 IIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE--TIEKDIAFGPINLGLSEEEIEN 121
Query: 143 KAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
+ K + ++ + L K+ LSGGQK+R++IA + P I+ LDEPT GLD
Sbjct: 122 RVKRA-MNIVG--LDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
++ ++++ + M I + + +AD + V+ +G C QGT
Sbjct: 179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 63.0 bits (154), Expect = 4e-11
Identities = 64/238 (26%), Positives = 117/238 (49%), Gaps = 29/238 (12%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
F+++++ Y +L+DIS + E ++GPSGSGK+ L++++ P
Sbjct: 3 FKNVTFR--------YPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI-----P 49
Query: 83 KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
+ + +SG I I+ ++D+ + LR++ + QD L TV E++ +
Sbjct: 50 RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFND-TVAENIAYGRPGATREEV 108
Query: 141 SRKAKESK----VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
A+ + + + + + + LSGGQ++R++IA LL +P I+ LDE T
Sbjct: 109 EEAARAANAHEFIMELPEGYDTVIGERGVK--LSGGQRQRIAIARALLKDPPILILDEAT 166
Query: 197 TGLDYLNATNLVK--LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ LD + LV+ L R M ++ T +I H+ S + AD + VL +G +GT
Sbjct: 167 SALD-TESERLVQAALERLMKNRTTFVIA--HR--LSTIENADRIVVLEDGKIVERGT 219
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 65.5 bits (160), Expect = 4e-11
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 34/233 (14%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
T Y + + L IS V E ++G SGSGK+ L++++ P+ E +SG I +
Sbjct: 337 TFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI-----PRFYEPDSGQILL 391
Query: 95 NETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLG--NQYSRKAKESK-- 148
+ L D+ + LR++ + QD +L T+A ++ G Q R E
Sbjct: 392 DGHDLADYTLASLRRQVALVSQDVVLFND-------TIANNIAYGRTEQADRAEIERALA 444
Query: 149 -------VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201
VD + L +N + LSGGQ++RL+IA LL + I+ LDE T+ LD
Sbjct: 445 AAYAQDFVDKLPLGLDTPIGENGV--LLSGGQRQRLAIARALLKDAPILILDEATSALDN 502
Query: 202 LNATNLVK--LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ LV+ L R M + T++I H+ S + AD + V+ +G +GT
Sbjct: 503 -ESERLVQAALERLMQGRTTLVIA--HR--LSTIEKADRIVVMDDGRIVERGT 550
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 64.5 bits (158), Expect = 4e-11
Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 38/206 (18%)
Query: 55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC---- 110
++ ++ I G SG+GKT L++ ++G RP+K G I +N L D K C
Sbjct: 23 AQGITAIFGRSGAGKTSLINAISGLTRPQK-----GRIVLNGRVLFDAE---KGICLPPE 74
Query: 111 -----YIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAK-ESKVDSIADSLSISTCKN 163
Y+ QD L V GN +Y ++ D I L I +
Sbjct: 75 KRRIGYVFQDARLFPHYKVR-----------GNLRYGMAKSMVAQFDKIVALLGIEPLLD 123
Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMII 222
LSGG+K+R++I LL+ P ++ +DEP LD L+ L +A + I+
Sbjct: 124 RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183
Query: 223 CTLHQPSASL---LNMADYLYVLTEG 245
H SL L +AD + VL +G
Sbjct: 184 YVSH----SLDEILRLADRVVVLEQG 205
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 65.0 bits (159), Expect = 5e-11
Identities = 63/227 (27%), Positives = 95/227 (41%), Gaps = 52/227 (22%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--NETRLQ 100
K ILK IS + E I+GPSGSGK+ L +L G P SG + + + R
Sbjct: 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT-----SGSVRLDGADLRQW 403
Query: 101 DHRMLRKESCYIMQDNLLQELL--TVEESLT-----------VAA------H---LKLGN 138
D L + Y+ QD EL T+ E++ + A H L+L
Sbjct: 404 DREQLGRHIGYLPQD---VELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQ 460
Query: 139 QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
Y I + + LSGGQ++R+++A L +P ++ LDEP +
Sbjct: 461 GYD--------TRIGEGGA----------TLSGGQRQRIALARALYGDPFLVVLDEPNSN 502
Query: 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
LD L + +G ++ H+PSA L D + VL +G
Sbjct: 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPSA--LASVDKILVLQDG 547
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 62.5 bits (152), Expect = 6e-11
Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 28/231 (12%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
FQ+++++ Y T ++ +L+D+S E++ ++GPSGSGK+ ++ +L + +P
Sbjct: 14 FQNVTFA---YPTRPDTL----VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP 66
Query: 83 KKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
+ G + ++ + +H+ L + + Q+ +L SL L +
Sbjct: 67 QG-----GQVLLDGKPISQYEHKYLHSKVSLVGQEPVL-----FARSLQDNIAYGLQSCS 116
Query: 141 SRKAKESKVDSIADS------LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
KE+ + A S T LSGGQK+R++IA L+ NP ++ LDE
Sbjct: 117 FECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDE 176
Query: 195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
T+ LD + + + L D + T+++ S + AD + VL G
Sbjct: 177 ATSALDAESEQQVQQALYDWPERRTVLVIAHR---LSTVERADQILVLDGG 224
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 62.8 bits (153), Expect = 6e-11
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 25/198 (12%)
Query: 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQ- 100
++LK +S + ++ I+G SGSGK+ L + +P ++G I +N E RL+
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-----SAGSIRVNGEEIRLKR 74
Query: 101 ---------DHR---MLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKES 147
D R LR + Q NL + +E + H+ LG S+
Sbjct: 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV-LG--VSKAEAIE 131
Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
+ + + I+ + HLSGGQ++R++IA L P ++ DEPT+ LD +
Sbjct: 132 RAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEV 191
Query: 208 VKLLRDMAHQG-TMIICT 224
+K+++D+A +G TM++ T
Sbjct: 192 LKVMQDLAEEGRTMVVVT 209
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 62.6 bits (152), Expect = 7e-11
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 25/229 (10%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR--PKKTETNSGYIEINE 96
S ++L ++ ++ ++GPSGSGK+ LL + P+ + Y++ +
Sbjct: 12 SFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD 71
Query: 97 TRLQDHRMLRKESCYIMQ-DNLLQELLTVEESLTVAAHLKLGNQY-SRKAKESKV----- 149
D LR+ + Q N + L E VA LKL S+K + +V
Sbjct: 72 IFKMDVIELRRRVQMVFQIPNPIPNLSIFE---NVALGLKLNRLVKSKKELQERVRWALE 128
Query: 150 -----DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
D + D L K LSGGQ++RL IA L P ++ DEPT LD N
Sbjct: 129 KAQLWDEVKDRLDAPAGK------LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENT 182
Query: 205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+ L ++ T+++ T A+ ++DY+ L +G G
Sbjct: 183 AKIESLFLELKKDMTIVLVTHFPQQAA--RISDYVAFLYKGQIVEWGPT 229
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 62.2 bits (151), Expect = 7e-11
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 12/203 (5%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
IL +IS + E I GPSG GK+ LL I+A P E +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL---LFEGEDVSTLKPEA 74
Query: 105 LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
R++ Y Q L + TVE++L ++ + R A +D +A +
Sbjct: 75 YRQQVSYCAQTPALFGD--TVEDNLIFPWQIR-NRRPDRAAA---LDLLARFALPDSILT 128
Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMII 222
LSGG+K+R+++ L P I+ LDE T+ LD N N+ + + R + Q ++
Sbjct: 129 KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188
Query: 223 CTLHQPSASLLNMADYLYVLTEG 245
H + + AD + L G
Sbjct: 189 WITHDKDQA-IRHADKVITLQPG 210
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 65.0 bits (159), Expect = 7e-11
Identities = 68/241 (28%), Positives = 101/241 (41%), Gaps = 74/241 (30%)
Query: 45 ILKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY-------- 91
IL D+S G FV+ I+GPSGSGK+ LL +L G+ P E+ S +
Sbjct: 468 ILDDVSLQIEPGEFVA-----IVGPSGSGKSTLLRLLLGFETP---ESGSVFYDGQDLAG 519
Query: 92 IEINETR------LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK 145
+++ R LQ+ R++ S I ++ LT++E+ A L
Sbjct: 520 LDVQAVRRQLGVVLQNGRLM---SGSIFENIAGGAPLTLDEAWEAARMAGL--------- 567
Query: 146 ESKVDSIADSLS--ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD--- 200
+ ++ + IS TL SGGQ++RL IA L+ P I+ DE T+ LD
Sbjct: 568 AEDIRAMPMGMHTVISEGGGTL----SGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623
Query: 201 ---------YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
L T +V +AH+ + I AD +YVL G QG
Sbjct: 624 QAIVSESLERLKVTRIV-----IAHRLSTIR------------NADRIYVLDAGRVVQQG 666
Query: 252 T 252
T
Sbjct: 667 T 667
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 63.8 bits (156), Expect = 7e-11
Identities = 64/245 (26%), Positives = 115/245 (46%), Gaps = 48/245 (19%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD 101
K+++ ++ + E +LGPSG GKT +L ++AG+ P +SG I ++ QD
Sbjct: 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-----DSGRIMLDG---QD 77
Query: 102 HRMLRKESCYI---MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS-IADSLS 157
+ E+ ++ Q L +TV E+ VA L++ +K +++ + ++L
Sbjct: 78 ITHVPAENRHVNTVFQSYALFPHMTVFEN--VAFGLRM-----QKTPAAEITPRVMEALR 130
Query: 158 ISTCKNTLT---KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
+ + LSGGQ++R++IA +++ P ++ LDE + LDY KL + M
Sbjct: 131 MVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY-------KLRKQM 183
Query: 215 AHQ--------G-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGY 265
++ G T + T Q A L M+D + V+ +G GT P + Y
Sbjct: 184 QNELKALQRKLGITFVFVTHDQEEA--LTMSDRIVVMRDGRIEQDGT-PREI-------Y 233
Query: 266 QCPSN 270
+ P N
Sbjct: 234 EEPKN 238
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 62.7 bits (153), Expect = 9e-11
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 19/228 (8%)
Query: 36 HSYSIKS---KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
H Y K+ + L D++ S I+G +GSGK+ LL L G +P G
Sbjct: 10 HRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGER 69
Query: 93 EI-NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQ---YSRKAKESK 148
I + + + LRK+ + Q E EE TV + G S + + K
Sbjct: 70 VITAGKKNKKLKPLRKKVGIVFQ---FPEHQLFEE--TVEKDICFGPMNFGVSEEDAKQK 124
Query: 149 VDSIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
+ + + + + L + LSGGQ +R++IA L P ++ LDEPT GLD
Sbjct: 125 AREMIELVGLP--EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRK 182
Query: 206 NLVKLLRDMAHQGTM-IICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
++++ + + + + H AD + V+ +G QGT
Sbjct: 183 EMMEMFYKLHKEKGLTTVLVTHS-MEDAARYADQIVVMHKGTVFLQGT 229
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 64.5 bits (158), Expect = 9e-11
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 46/252 (18%)
Query: 17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDIL 76
+L ++S++ Y + + +LK +S + E +LG +G GK+ LL +L
Sbjct: 335 DQVSLTLNNVSFT--------YPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL 386
Query: 77 AGYRRPKKTETNSGYIEINETRLQDHR--MLRKESCYIMQ----------DNLL--QELL 122
P G I +N + D+ LR+ + Q DNLL
Sbjct: 387 TRAWDP-----QQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNA 441
Query: 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALE 182
+ E + V + L + D ++ + LSGG+++RL IA
Sbjct: 442 SDEALIEVLQQVGLEKL------------LEDDKGLNAWLGEGGRQLSGGEQRRLGIARA 489
Query: 183 LLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA--DYLY 240
LL + ++ LDEPT GLD +++LL + A T+++ T H+ L + D +
Sbjct: 490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMIT-HR----LTGLEQFDRIC 544
Query: 241 VLTEGYCTYQGT 252
V+ G QGT
Sbjct: 545 VMDNGQIIEQGT 556
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 62.4 bits (151), Expect = 1e-10
Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 15/216 (6%)
Query: 30 ALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS 89
A+ + S+ ++ IL+ +S +++ I+GPSG GK+ L L +
Sbjct: 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVE 66
Query: 90 GYIE-----INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
G +E I E R+ +R+ R+ S + NL ++V ++ VA +K+ +
Sbjct: 67 GRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP--MSVYDN--VAYGVKIVGWRPKLE 122
Query: 145 KESKVDS-IADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+ V+S + D+ K+ + K LSGGQ++RL IA L P ++ +DEP GLD
Sbjct: 123 IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
Query: 201 YLNATNLVKLLRDMAHQG--TMIICTLHQPSASLLN 234
+ + + L++ + + TM+I + + S L+
Sbjct: 183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS 218
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 61.8 bits (150), Expect = 1e-10
Identities = 49/194 (25%), Positives = 95/194 (48%), Gaps = 26/194 (13%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNS----GYIEI 94
LK I+ +++++ ++GPSG GK+ LL D++ G + K + G I++
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
+ R++ + +K + + M ++ E+ VA L+ +K + V+
Sbjct: 79 ADLRIKVGMVFQKPNPFPM---------SIYEN--VAYGLRAQGIKDKKVLDEVVERSLR 127
Query: 155 SLSI-STCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210
++ K+ L H LSGGQ++RL IA + P +I +DEPT+ LD + + +L
Sbjct: 128 GAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL 187
Query: 211 LRDMAHQGTMIICT 224
+ ++ T++I T
Sbjct: 188 MEELKKNYTIVIVT 201
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 64.2 bits (157), Expect = 1e-10
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPK--KTETNSGYIEINE----TRLQDH-RMLRKESCYIM 113
ILGP+G GK+ L ILAG +P + E + E+ + T LQ++ + L + +
Sbjct: 105 ILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAV 164
Query: 114 QDNLLQELL------TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
+L+ V E L + + K D + + L + +
Sbjct: 165 HKPQYVDLIPKVVKGKVGELLK------------KVDERGKFDEVVERLGLENVLDRDVS 212
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQ 227
LSGG+ +R++IA LL + + F DEP++ LD N +++R++A G +I H
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272
Query: 228 PSASLLNMADYLYVL 242
A L ++D++++L
Sbjct: 273 -LAVLDYLSDFVHIL 286
Score = 48.4 bits (116), Expect = 8e-06
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 24/151 (15%)
Query: 50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKES 109
G E+ ILGP+G GKT + +LAG +P +E +D ++ K
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP------------DEGSEEDLKVSYKPQ 408
Query: 110 CYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL 169
YI D TVE+ L A G+ Y + I L++ L
Sbjct: 409 -YISPD----YDGTVEDLLRSAIRSAFGSSYFK-------TEIVKPLNLEDLLERPVDEL 456
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
SGG+ +R++IA L + LDEP+ LD
Sbjct: 457 SGGELQRVAIAAALSREADLYLLDEPSAYLD 487
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 61.9 bits (150), Expect = 1e-10
Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 41/249 (16%)
Query: 27 SYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGY 79
++SA Y + K +K+++ +++ I+GPSG GKT LL D + G+
Sbjct: 8 NFSAYYGE--------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGF 59
Query: 80 RRPKKTETNSGYIE---INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL 136
R K Y + I + +L D RK+ + Q +++ ++
Sbjct: 60 RVEGKI-----YFKGQDIYDPQL-DVTEYRKKVGMVFQK-------PTPFPMSIYDNVAF 106
Query: 137 GNQYSRKAKESKVDSIAD-SLSIST----CKNTLTK---HLSGGQKKRLSIALELLSNPS 188
G + + K+D I + SL + K+ L K LSGGQ++RL IA L P
Sbjct: 107 GPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE 166
Query: 189 IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248
+I LDEPT+ LD + + KLL +++ T++I T + A + +ADY+ + G
Sbjct: 167 VILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQA--IRIADYIAFMYRGELI 224
Query: 249 YQGTVPGLV 257
G +V
Sbjct: 225 EYGPTREIV 233
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 61.7 bits (150), Expect = 2e-10
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 33 YDTHSYSIKS--KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
Y T +L ++S E +LG SG GK+ L +L G +P + +
Sbjct: 12 YRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFR 71
Query: 91 YIEINETRLQDHRMLRKESCYIMQDNL--LQELLTVEESLTVA-AHLKLGNQYSRKAKES 147
++ + + R R++ + QD+ + +TV + + HL ++ +KA+ +
Sbjct: 72 GQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIA 131
Query: 148 KV-------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
++ AD L + LSGGQ +R++IA L P +I LDE + LD
Sbjct: 132 ELLDMVGLRSEDADKLP---------RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182
Query: 201 YLNATNLVKLLRDMAHQG 218
+ +++LLR +
Sbjct: 183 MVLQAVILELLRKLQQAF 200
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 60.6 bits (148), Expect = 2e-10
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDH 102
ILK +S + ++G SG GK+ ++ +L + P SG I ++ + R +
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-----TSGEILLDGVDIRDLNL 72
Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS------RKAKESKVDSIADSL 156
R LR + + Q+ +L T+A +++ G + AK++ + SL
Sbjct: 73 RWLRSQIGLVSQEPVLF-------DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125
Query: 157 SISTCKNTL----TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
+TL LSGGQK+R++IA LL NP I+ LDE T+ LD + LV+
Sbjct: 126 PDGY--DTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDA-ESEKLVQEAL 182
Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
D A +G I H+ S + AD + VL G QGT
Sbjct: 183 DRAMKGRTTIVIAHRLST--IRNADLIAVLQNGQVVEQGT 220
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 62.7 bits (153), Expect = 2e-10
Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 27/228 (11%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKT----KLLDILAGYRRPKKTETNSGYIEINETR 98
+ +K IS + E ++G SGSGK+ +L +L SG I +
Sbjct: 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS----PAAAHPSGSILFDGED 78
Query: 99 L-----QDHRMLRKESC-YIMQDNL--LQELLTVEESL--TVAAHLKLGNQYSRKAKESK 148
L + R +R I Q+ + L L T+ + L + H L SR A ++
Sbjct: 79 LLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL----SRAAARAR 134
Query: 149 VDSIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
+ + + I + L + LSGGQ++R+ IA+ L + P ++ DEPTT LD
Sbjct: 135 ALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQA 194
Query: 206 NLVKLLRDM-AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
++ LL+++ A G I+ H + AD +YV+ G GT
Sbjct: 195 QILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQHGEIVETGT 241
Score = 55.7 bits (135), Expect = 5e-08
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ-----DHRMLRKESCYIMQD 115
++G SGSGK+ L L + G I + + + R LR+ + QD
Sbjct: 318 LVGESGSGKSTLGLALLRLIPSQ------GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQD 371
Query: 116 --NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL-SISTCKNTLTKH---L 169
L +TV + + + + S ++ +V ++L + T ++
Sbjct: 372 PYGSLSPRMTVGQIIEEGLRV-HEPKLSAAERDQRV---IEALEEVGLDPATRNRYPHEF 427
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
SGGQ++R++IA L+ P +I LDEPT+ LD ++ LLRD+
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 61.4 bits (149), Expect = 3e-10
Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 25/237 (10%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKT---KLLD-ILAG 78
F+ +S++ Y D+ K L DIS + ++G +GSGK+ KL++ +L
Sbjct: 8 FKHVSFT--YPDS------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59
Query: 79 YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL--TVEESLTVAAHLKL 136
P T G I + + D R E I+ N + + TV + VA L+
Sbjct: 60 DDNPNSKITVDG-ITLTAKTVWDIR----EKVGIVFQNPDNQFVGATVGDD--VAFGLE- 111
Query: 137 GNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
R V + + + ++ +LSGGQK+R++IA L P II LDE T
Sbjct: 112 NRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDEST 171
Query: 197 TGLDYLNATNLVKLLRD-MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ LD ++KL+R +I H + NMAD + VL +G QG+
Sbjct: 172 SMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA--NMADQVLVLDDGKLLAQGS 226
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 60.9 bits (147), Expect = 3e-10
Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 31/205 (15%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEINET 97
+LK+I+ F ++++ I+GPSG GK+ LL DI++G R G + ++
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARL-------EGAVLLDNE 71
Query: 98 RLQDHRM----LRKESCYIMQD------NLLQELLTVEESLTVAAHLKLGNQYSRKAKES 147
+ + LRK + Q ++ + L A +L + +++
Sbjct: 72 NIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQA 131
Query: 148 KV-DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
+ D + D+L S LSGGQ++RL IA L P +I +DEP + LD ++
Sbjct: 132 ALWDEVKDNLHKSGLA------LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMR 185
Query: 207 LVKLLRDMAHQGTMIICTLHQPSAS 231
+ +L++++ T+ I T + A+
Sbjct: 186 IEELMQELKQNYTIAIVTHNMQQAA 210
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 60.3 bits (146), Expect = 3e-10
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 3/170 (1%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
E++ + G SG+GK+ LL ++ G RP + +I + ++ LR++ I QD+
Sbjct: 29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDH 88
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
L TV ++ VA L + + +V + D + + LSGG+++R
Sbjct: 89 HLLMDRTVYDN--VAIPLIIAGASGDDIRR-RVSAALDKVGLLDKAKNFPIQLSGGEQQR 145
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
+ IA +++ P+++ DEPT LD + +++L + G ++ H
Sbjct: 146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 60.8 bits (147), Expect = 3e-10
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 30/215 (13%)
Query: 39 SIKSKDI------LKDISGVFVS---KELSVILGPSGSGKT---KLLDILAGYRRPKKTE 86
+IK KD+ K I G+ + +++ I+GPSG GK+ K L+ ++ P K E
Sbjct: 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVE 66
Query: 87 TNSGYI--EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
+ I + R+ +R+ R+ + N +++ ++ G + S K
Sbjct: 67 GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF--------PMSIYENVAYGVRISAKL 118
Query: 145 KESKVDSIADSLSISTC-----KNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPT 196
++ +D I +S K+ L K LSGGQ++RL IA L P ++ +DEP
Sbjct: 119 PQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 197 TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
+ LD + + +L+ + + T+ I T + A+
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQAT 213
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 62.8 bits (153), Expect = 3e-10
Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 22/234 (9%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
FQD+S+S Y +LK ++ E+ ++GPSGSGK+ + +L +P
Sbjct: 481 FQDVSFS---YPNRP----DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP 533
Query: 83 KKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
G + ++ L DH L ++ + Q+ +L +V E++ +
Sbjct: 534 -----TGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEI 587
Query: 141 SRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
AK + T LSGGQK+R++IA L+ P ++ LDE T+
Sbjct: 588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSA 647
Query: 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
LD A L + ++ H+ S + AD + VL +G GT
Sbjct: 648 LD---AECEQLLQESRSRASRTVLLIAHR--LSTVERADQILVLKKGSVVEMGT 696
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 61.8 bits (150), Expect = 3e-10
Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 24/207 (11%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI------NETRLQDHRMLRKESC 110
E+ VI+G SGSGK+ + +L + E +G I I ++ ++ + RK+
Sbjct: 20 EIFVIMGLSGSGKSTTVRMLN-----RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIG 74
Query: 111 YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH-- 168
+ Q L +T+ ++ ++ L + RK K + L + + ++
Sbjct: 75 MVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA------LELLKLVGLEEYEHRYPD 128
Query: 169 -LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM--AHQGTMIICTL 225
LSGG ++R+ +A L + P I+ +DE + LD L ++ L+ + Q T++ T
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188
Query: 226 HQPSASLLNMADYLYVLTEGYCTYQGT 252
A + + D + ++ G GT
Sbjct: 189 DLDEA--IRIGDRIVIMKAGEIVQVGT 213
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 62.4 bits (152), Expect = 4e-10
Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 25/217 (11%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
L ++ E ++GPSG+GK+ L +L + P+ +++ + + L
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE---L 412
Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGN------QYSRKAKESKVDSIADSLS-- 157
R + QD +L + +V +++ G + A+ + +L
Sbjct: 413 RARMALVPQDPVLF-------AASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMA 215
T LSGGQ++R++IA +L + I+ LDE T+ LD + LV+ L M
Sbjct: 466 YDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQ-LVQQALETLMK 524
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ T+II H+ A++L AD + V+ +G QGT
Sbjct: 525 GRTTLIIA--HR-LATVLK-ADRIVVMDQGRIVAQGT 557
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 60.6 bits (147), Expect = 4e-10
Identities = 62/230 (26%), Positives = 95/230 (41%), Gaps = 63/230 (27%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEI 94
K L DI+ ++ ++GPSG GK+ LL D++ G R +G I
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRI-------TGDILY 70
Query: 95 NETRLQDHRM----LRKESCYIMQ----------DNLL-----------QELLT-VEESL 128
N + D LR++ + Q +N+ + L T VE+SL
Sbjct: 71 NGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSL 130
Query: 129 TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPS 188
AA D + D L S LSGGQ++RL IA L NP
Sbjct: 131 KGAALW---------------DEVKDRLHDSALS------LSGGQQQRLCIARTLAVNPE 169
Query: 189 IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADY 238
+I +DEP + LD + + L+ D+ + T+II T + A+ ++DY
Sbjct: 170 VILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAA--RVSDY 217
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 60.8 bits (147), Expect = 4e-10
Identities = 54/215 (25%), Positives = 107/215 (49%), Gaps = 30/215 (13%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYR-------RPKKTETNSGY 91
LK+I+ + K+++ ++GPSG GK+ L D+ G P S
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 92 IEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV-D 150
++ E R++ + +K + + ++ E+ VA L++ R E +V +
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPK---------SIFEN--VAYGLRIRGVKRRSILEERVEN 140
Query: 151 SIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
++ ++ K+ L +LSGGQ++RL IA L ++P I+ DEPT+ LD + ++
Sbjct: 141 ALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI 200
Query: 208 VKLLRDMAHQGTMIICTLH-QPSASLLNMADYLYV 241
+L+ D+ ++ T++I T + Q +A + + Y+Y+
Sbjct: 201 EELISDLKNKVTILIVTHNMQQAARVSDYTAYMYM 235
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 59.8 bits (145), Expect = 4e-10
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 19/193 (9%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
IL + V E ++G SGSGK+ LL ILAG + +SG + + L H+M
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGL-----DDGSSGEVSLVGQPL--HQM 77
Query: 105 -------LRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
LR + ++ Q +L L E++ + A L+ + SR+++ + L
Sbjct: 78 DEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSRNGAKALLE-QL 134
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
+ + L LSGG+++R+++A P ++F DEPT LD + LL +
Sbjct: 135 GLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 217 -QGTMIICTLHQP 228
GT +I H
Sbjct: 195 EHGTTLILVTHDL 207
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 59.9 bits (145), Expect = 6e-10
Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
LK+I+ E++ I+GPSG GK+ + L + +G + N + + ++
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 105 ---LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST 160
LRK + Q N + ++ +++ + G + +K +E S+ D
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ--SIFDNVAYGPRIH-GTKNKKKLQEIVEKSLKDVALWDE 144
Query: 161 CKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
K+ L LSGGQ++RL IA L +NP ++ +DEPT+ LD ++ + +L+ + +
Sbjct: 145 VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEK 204
Query: 218 GTMIICTLHQPSAS 231
T++I T + A+
Sbjct: 205 YTIVIVTHNMQQAA 218
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 57.5 bits (140), Expect = 6e-10
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
LSGG+K RL++A LL NP+++ LDEPT LD + L + L++ + GT+I+
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVIL 122
Score = 37.8 bits (89), Expect = 0.003
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
S + K +LKDIS + ++G +G+GK+ LL ++AG P
Sbjct: 7 SKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP 52
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 59.7 bits (145), Expect = 7e-10
Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 18/191 (9%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPK--KTETNSGYIEINE----TRLQDH--RMLRKESCYI 112
++GP+G GK+ L ILAG +P K + + EI + + LQ++ ++L + I
Sbjct: 31 LVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVI 90
Query: 113 MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG 172
++ + + A K+G +K + K+D + D L + + LSGG
Sbjct: 91 VKPQYVDLI-------PKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGG 143
Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL 232
+ +R++IA L + F DEP++ LD N +L+R++A ++ H ++
Sbjct: 144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEH--DLAV 201
Query: 233 LNM-ADYLYVL 242
L+ +DY++ L
Sbjct: 202 LDYLSDYIHCL 212
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 59.3 bits (143), Expect = 9e-10
Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 30/206 (14%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEIN 95
K +K+++ ++ ++GPSG GKT L D+ G R + + +I
Sbjct: 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQ--DIY 74
Query: 96 ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRK-----AKESKV- 149
R+ M R+ + N + + V A LKL R A+ S
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFD---NVVAGLKLAGIRDRDHLMEVAERSLRG 131
Query: 150 ----DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
D + D L T LSGGQ++RL IA L P I+ +DEPT+ LD +
Sbjct: 132 AALWDEVKDRL------KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
Query: 206 NLVKLLRDMAHQGTMIICT--LHQPS 229
+ L+ D+ T+II T +HQ +
Sbjct: 186 RIEDLMTDLKKVTTIIIVTHNMHQAA 211
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 59.1 bits (143), Expect = 1e-09
Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 22/189 (11%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
L+D S ++ ++G +GSGK+ L L G+ R SG I I + + L
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPTR--QAL 75
Query: 106 RKE-SCYIMQDNLLQEL-----LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-- 157
+K Y+ Q +E+ + VE+ + + + +G + R+AK+ + +L+
Sbjct: 76 QKNLVAYVPQS---EEVDWSFPVLVEDVVMMGRYGHMG--WLRRAKKRDRQIVTAALARV 130
Query: 158 -ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
+ ++ LSGGQKKR+ +A + +I LDEP TG+D ++ LLR++
Sbjct: 131 DMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190
Query: 217 QG-TMIICT 224
+G TM++ T
Sbjct: 191 EGKTMLVST 199
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 59.0 bits (143), Expect = 2e-09
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 12/210 (5%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--R 103
LKD+S + + I+G +GSGK+ + ++ G + SG I N + D
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-----KSGEIFYNNQAITDDNFE 79
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
LRK + Q N + + VA L+ + +V + + +
Sbjct: 80 KLRKHIGIVFQ-NPDNQFVGSIVKYDVAFGLE-NHAVPYDEMHRRVSEALKQVDMLERAD 137
Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMII 222
LSGGQK+R++IA L NPS+I LDE T+ LD NL+ L+R + + II
Sbjct: 138 YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITII 197
Query: 223 CTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
H S ++ AD++ V+ +G +GT
Sbjct: 198 SITHDLSEAM--EADHVIVMNKGTVYKEGT 225
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 60.1 bits (146), Expect = 2e-09
Identities = 59/234 (25%), Positives = 102/234 (43%), Gaps = 31/234 (13%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
+Y L++++ ++ I GP+GSGK+ LL ++ + + + G I ++
Sbjct: 322 TYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ-----RHFDVSEGDIRFHD 376
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEE-----SLTVAAHLKLGNQYSRKAKESKVDS 151
L ++ D+ L V + S TVA ++ LG + + + V
Sbjct: 377 IPLTKLQL----------DSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVAR 426
Query: 152 IA----DSLSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
+A D L + +T LSGGQK+R+SIA LL N I+ LD+ + +D
Sbjct: 427 LASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486
Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257
++ LR T+II + H+ SA L A + V+ G+ +G L
Sbjct: 487 EHQILHNLRQWGEGRTVII-SAHRLSA--LTEASEILVMQHGHIAQRGNHDQLA 537
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 60.3 bits (146), Expect = 2e-09
Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 18/226 (7%)
Query: 44 DILKDISGVFVSKELSVILGPSGSGKT-------KLLDILAGYRRPKKT---ETNSGYIE 93
++++S E I+G SGSGK+ +LL+ G + K + IE
Sbjct: 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89
Query: 94 INETRLQDHRMLR-KESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVD 150
++E R +R + I Q+ + L + TV E +A ++L SR+ +
Sbjct: 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQ--IAESIRLHQGASREEAMVEAK 147
Query: 151 SIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
+ D + I + L+++ LSGG ++R+ IA+ L P+++ DEPTT LD +
Sbjct: 148 RMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQI 207
Query: 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
++L++ + + +M + + + +AD + V+ +G G+V
Sbjct: 208 LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSV 253
Score = 42.1 bits (99), Expect = 8e-04
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR---LQDHRM--LRKESCYIMQD 115
++G SGSGK+ G + E+ G I N R L ++ LR++ +I QD
Sbjct: 355 LVGESGSGKST-----TGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 116 NL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH-LSGG 172
L TV +S + L++ KA ++V + + + + H SGG
Sbjct: 410 PYASLDPRQTVGDS--IMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGG 467
Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
Q++R+ IA L NP +I DE + LD ++ LL D+
Sbjct: 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 57.3 bits (139), Expect = 4e-09
Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 34/220 (15%)
Query: 49 ISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLR 106
+S + E+ ++GP+G+GK+ LL +AG SG I+ L+ L
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG------LLPGSGSIQFAGQPLEAWSAAELA 68
Query: 107 KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT 166
+ Y+ Q + V + LT L ++ +A S ++ +A++L +
Sbjct: 69 RHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSV 124
Query: 167 KHLSGGQKKRLSIALELL-----SNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAHQG- 218
LSGG+ +R+ +A +L NP+ ++ LDEP LD L +LL ++ QG
Sbjct: 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGI 184
Query: 219 TMIIC------TLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+++ TL AD +++L +G G
Sbjct: 185 AVVMSSHDLNHTLRH--------ADRVWLLKQGKLLASGR 216
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 59.2 bits (144), Expect = 4e-09
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 40/210 (19%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET------NSGYIE--- 93
K+ILKDIS F +LG +G+GK+ LL I+AG + E GY+
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEP 77
Query: 94 -INETR---------LQDHRMLRKESCYIMQ---------DNLLQELLTVEESLTVAAHL 134
++ T+ + + + I D LL E ++E + A
Sbjct: 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW 137
Query: 135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
L + K++ D+L + LSGG+++R+++ LLS P ++ LDE
Sbjct: 138 DL---------DRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDE 187
Query: 195 PTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
PT LD + L + L++ + GT++ T
Sbjct: 188 PTNHLDAESVAWLEQHLQE--YPGTVVAVT 215
Score = 39.9 bits (94), Expect = 0.003
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
LSGG++ R+ +A L S +++ LDEPT LD
Sbjct: 442 GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
Score = 34.1 bits (79), Expect = 0.22
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
++GP+G+GK+ L ++ G +P +SG I+I ET
Sbjct: 353 VIGPNGAGKSTLFRMITGQEQP-----DSGTIKIGET 384
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 57.4 bits (139), Expect = 4e-09
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 51/207 (24%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
LK I+ +++ ++GPSG GK+ L L + G + ++ + +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 105 ---LRKESCYIMQ----------DNL--------------LQELLTVEESLTVAAHLKLG 137
LRK + Q DN+ L E+ VE+SL AA
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI--VEKSLKGAALW--- 133
Query: 138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
D + D L K+ L LSGGQ++RL IA L P ++ +DEPT+
Sbjct: 134 ------------DEVKDRLK----KSALG--LSGGQQQRLCIARALAVEPEVLLMDEPTS 175
Query: 198 GLDYLNATNLVKLLRDMAHQGTMIICT 224
LD ++ + +L++++ T++I T
Sbjct: 176 ALDPISTLKIEELIQELKKDYTIVIVT 202
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 57.3 bits (138), Expect = 4e-09
Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 32/215 (14%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEINETR 98
LK IS K + +GPSG GK+ L D++ R + + I +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 99 LQDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLG----NQYSRKAKESKV---- 149
+ + LRK + Q N + ++ E+ VA L++ N + R+ E +
Sbjct: 79 VDE---LRKNVGMVFQRPNPFPK--SIFEN--VAYGLRVNGVKDNAFIRQRVEETLKGAA 131
Query: 150 --DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
D + D L S LSGGQ++RL IA + +PS++ +DEP + LD ++ +
Sbjct: 132 LWDEVKDKLKESAFA------LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
Query: 208 VKLLRDMAHQGTMIICTLH-QPSASLLNMADYLYV 241
+L+ ++ T++I T + Q +A + + + Y+
Sbjct: 186 EELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM 220
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 58.7 bits (142), Expect = 5e-09
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 22/169 (13%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ- 100
S + D+S + + I+GP+G+GKT L+++L P G I I+ +
Sbjct: 347 SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT-----VGQILIDGIDINT 401
Query: 101 -DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK--ESKVDSIADSLS 157
LRK + QD L ++ +++LG + + + E+ + A
Sbjct: 402 VTRESLRKSIATVFQDAGLFNR-------SIRENIRLGREGATDEEVYEAAKAAAAHDFI 454
Query: 158 ISTCKNTLT------KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+ T LSGG+++RL+IA +L N I+ LDE T+ LD
Sbjct: 455 LKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 56.3 bits (137), Expect = 6e-09
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 35/201 (17%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI---- 92
Y +LK+IS E I+G +GSGK+ LL LA +R E +SG I
Sbjct: 11 RYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLL--LALFRL---VELSSGSILIDG 65
Query: 93 -EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA-----KE 146
+I++ L D LR I QD +L S T+ ++L +YS + +
Sbjct: 66 VDISKIGLHD---LRSRISIIPQDPVL-------FSGTIRSNLDPFGEYSDEELWQALER 115
Query: 147 SKVDSIADSLS------ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+ +SL + +LS GQ++ L +A LL I+ LDE T +D
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGE----NLSVGQRQLLCLARALLRKSKILVLDEATASVD 171
Query: 201 YLNATNLVKLLRDMAHQGTMI 221
+ K +R+ T++
Sbjct: 172 PETDALIQKTIREAFKDCTVL 192
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 57.3 bits (138), Expect = 7e-09
Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 24/243 (9%)
Query: 20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY 79
+++ ++SY+ Y + K+ L + S F +++ ++G +GSGK+ ++ + G
Sbjct: 6 DIILDNVSYT--YAKKTPFEFKA---LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60
Query: 80 RRPKKTETNSG--YIEINETRLQDHRMLRKESCYIMQ---DNLLQELLTVEESLTVAAHL 134
+ +T G I N ++++ + LRKE + Q L QE T+E+ + +
Sbjct: 61 IISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQE--TIEKDIAFGP-V 117
Query: 135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTK----HLSGGQKKRLSIALELLSNPSII 190
LG K+ + + L + K LSGGQK+R+++A + + + +
Sbjct: 118 NLGEN-----KQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTL 172
Query: 191 FLDEPTTGLDYLNATNLVKL-LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249
LDEPT GLD + + L R II H +L +AD + V+ EG
Sbjct: 173 VLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVIS 231
Query: 250 QGT 252
G+
Sbjct: 232 IGS 234
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 57.4 bits (138), Expect = 7e-09
Identities = 68/298 (22%), Positives = 126/298 (42%), Gaps = 46/298 (15%)
Query: 2 KSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSI----KSKDILKDISGVFVSKE 57
K ++AEL+ + +LL +D + A ++ +++ ++K +L D++ +
Sbjct: 51 KQKKAELKQFLNKKKTQVDLLKEDFN-HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNK 109
Query: 58 LSVILGPSGSGKTKLL-------DILAGYRRPKK-----TETNSGYIEINETRLQDHRML 105
++ +GPSG GK+ L D++ G + T T S I E R + +
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 106 RKESCYIMQ--DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-STCK 162
+K + + M DN VA + RK E V+ S ++ K
Sbjct: 170 QKPTPFEMSIFDN-------------VAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK 216
Query: 163 NTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT 219
+ L K LSGGQ++RL IA + P ++ +DEPT+ LD + + +L+ ++ + +
Sbjct: 217 DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYS 276
Query: 220 MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYV 277
+II T A ++D +G+ G + + P N DY+
Sbjct: 277 IIIVTHSMAQAQ--RISDETVFFYQGWIEEAGETKTIFIH--------PKNKRTKDYI 324
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 56.9 bits (138), Expect = 7e-09
Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 30/237 (12%)
Query: 24 QDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPK 83
+ IS+ Y D +Y+ LKD+S E I+G +GSGK+ L +L G P+
Sbjct: 9 EHISFR--YPDAATYA------LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60
Query: 84 KTETNSGYIEINETRLQDHRM--LRKESCYIMQ--DNLLQEL-LTVEESLTVAAHLKLGN 138
+G I + L + + +R++ + Q DN Q + TV++ VA L+
Sbjct: 61 -----AGTITVGGMVLSEETVWDVRRQVGMVFQNPDN--QFVGATVQDD--VAFGLE-NI 110
Query: 139 QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
R+ +VD + + N LSGGQK+R++IA L P II LDE T+
Sbjct: 111 GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSM 170
Query: 199 LDYLNATNLVKLLRDMAHQGTM-IICTLH--QPSASLLNMADYLYVLTEGYCTYQGT 252
LD +++ +R + Q + ++ H +A AD + V+ +G +GT
Sbjct: 171 LDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ----ADRVIVMNKGEILEEGT 223
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 57.5 bits (139), Expect = 7e-09
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 23/179 (12%)
Query: 48 DISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRK 107
D+S E+ +LG SG GK+ LL +LAG+ +P +G I ++ L ++
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-----TAGQIMLDGVDLSHVPPYQR 91
Query: 108 ESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
+ Q L +TVE+++ G + + K + + L + + +
Sbjct: 92 PINMMFQSYALFPHMTVEQNIA------FGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR 145
Query: 168 ---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD-MAHQGTMII 222
LSGGQ++R+++A L P ++ LDEP LD K LRD M + I+
Sbjct: 146 KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD--------KKLRDRMQLEVVDIL 196
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 58.0 bits (141), Expect = 8e-09
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 32/196 (16%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHR 103
L DIS + ++ ++G +G+GK+ LL IL+G +P ++G I I+ E R
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-----DAGSILIDGQEMRFASTT 74
Query: 104 MLRKESCYIMQDNLL-------QELLTVEESLTVAAHLKLGNQYSR------KAKESKVD 150
L QEL V E +TVA +L LG + + +
Sbjct: 75 -----------AALAAGVAIIYQELHLVPE-MTVAENLYLGQLPHKGGIVNRRLLNYEAR 122
Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210
+ L + +T K+LS GQ++ + IA L N +I DEPT+ L L ++
Sbjct: 123 EQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV 182
Query: 211 LRDMAHQGTMIICTLH 226
+R++ +G +I+ H
Sbjct: 183 IRELRAEGRVILYVSH 198
Score = 36.8 bits (86), Expect = 0.031
Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 55/232 (23%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S+S+++ +I+ G+F G G+G+++L+ +L G R +G + ++
Sbjct: 273 SFSVRAGEIV----GLF---------GLVGAGRSELMKLLYGATRRT-----AGQVYLDG 314
Query: 97 TRLQDHR---------ML----RKESCYIMQDNLLQELLTVEESLTVAA---HLKLGNQY 140
+ ML RK + ++ + +V +++ ++A HL+ G
Sbjct: 315 KPIDIRSPRDAIRAGIMLCPEDRK------AEGIIP-VHSVADNINISARRHHLRAGCLI 367
Query: 141 SRKAKESKVDSIADSLSIST-CKNTLTKHLSGG--QKKRLSIALELLSNP-SIIFLDEPT 196
+ + + D SL+I T + L +LSGG QK L LS +I LDEPT
Sbjct: 368 NNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILG---RWLSEDMKVILLDEPT 424
Query: 197 TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL---LNMADYLYVLTEG 245
G+D + ++ ++A QG ++ S+ L L +AD + V+ EG
Sbjct: 425 RGIDVGAKHEIYNVIYELAAQGVAVLFV----SSDLPEVLGVADRIVVMREG 472
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 57.5 bits (139), Expect = 8e-09
Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 18/206 (8%)
Query: 49 ISGVFVSKELSVIL---GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
+ GV +S ++ GP+G+GKT LL + G P ++ R
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL---SARAA 75
Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR--KAKESKVDSIADSLSISTCKN 163
+ + QD L V + + + ++ + + V+ + ++ +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS-RFDTWTETDRAAVERAMERTGVAQFAD 134
Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
LSGG+++R+ +A L ++ LDEPT LD + ++L+R + G +
Sbjct: 135 RPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVA 194
Query: 224 TLHQPSASLLNMA----DYLYVLTEG 245
+H L++A D L +L +G
Sbjct: 195 AIHD-----LDLAARYCDELVLLADG 215
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 56.6 bits (137), Expect = 8e-09
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 21/198 (10%)
Query: 33 YDTHSYSIKS--KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
Y S K + +L ++S S E +LG SG GK+ L +L G P + +
Sbjct: 13 YAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWR 72
Query: 91 YIEINETRLQDHRMLRKESCYIMQDNL--LQELLTVEESLTVAA-HLKLGNQYSRKAKES 147
+ + + R++ + QD++ + TV E + HL ++ R A+ S
Sbjct: 73 GEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARAS 132
Query: 148 KV-------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
++ DS+ D LSGGQ +R+ +A L P ++ LDE + LD
Sbjct: 133 EMLRAVDLDDSVLDKRP---------PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
Query: 201 YLNATNLVKLLRDMAHQG 218
+ +++LL+ + Q
Sbjct: 184 LVLQAGVIRLLKKLQQQF 201
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 58.0 bits (141), Expect = 8e-09
Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 39/192 (20%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSK--ELSVILGPSGSGKTKLLDILAGYR 80
F D+S+S YD S+ ++D+S F +K + I+GP+G+GK+ L+++L
Sbjct: 337 FDDVSFS---YDN------SRQGVEDVS--FEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385
Query: 81 RPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTV----AAHL 134
P+ SG I I+ T ++ LR+ + QD L ++E+++ V A
Sbjct: 386 DPQ-----SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRPDATDE 439
Query: 135 KLGNQYSRKAKE--SKVDSIADSLSISTCKNTLT----KHLSGGQKKRLSIALELLSNPS 188
++ R A E D I +T+ + LSGG+++RL+IA LL +P
Sbjct: 440 EM-----RAAAERAQAHDFIERKPD---GYDTVVGERGRQLSGGERQRLAIARALLKDPP 491
Query: 189 IIFLDEPTTGLD 200
I+ LDE T+ LD
Sbjct: 492 ILILDEATSALD 503
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 56.5 bits (136), Expect = 9e-09
Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 34/216 (15%)
Query: 32 YYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKK 84
Y+D ILK+++ ++ ++GPSG GK+ + D++ G+R
Sbjct: 12 YFDDA-------HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH--- 61
Query: 85 TETNSGYIEINETRLQDHRM----LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQ 139
G+I ++ + D + LRK+ + Q N + ++ ++ VA L++ +
Sbjct: 62 ----EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK--SIFDN--VAYGLRIHGE 113
Query: 140 YSRKAKESKVDSIADSLSI-STCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEP 195
E +V+ + ++ K+ L K LSGGQ++RL IA + +P +I +DEP
Sbjct: 114 DDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 196 TTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
+ LD ++ T + L+ + T++I T + A+
Sbjct: 174 CSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQAT 209
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 57.0 bits (137), Expect = 1e-08
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 16/214 (7%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET---NSGYIEINETRLQDH 102
+KD S E+ VI+G SGSGK+ ++ +L P + + +I++ L++
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
R RK+ + Q L +TV ++ A ++L + + +E +D++ + +
Sbjct: 104 R--RKKIAMVFQSFALMPHMTVLDN--TAFGMELAGINAEERREKALDALR-QVGLENYA 158
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT----NLVKLLRDMAHQG 218
++ LSGG ++R+ +A L NP I+ +DE + LD L T LVKL HQ
Sbjct: 159 HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKL--QAKHQR 216
Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
T++ + A + + D + ++ G GT
Sbjct: 217 TIVFISHDLDEA--MRIGDRIAIMQNGEVVQVGT 248
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 55.7 bits (135), Expect = 1e-08
Identities = 68/263 (25%), Positives = 104/263 (39%), Gaps = 65/263 (24%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
S++ K+ILK ++ E+ I+GP+GSGK+ L +AG+ E SG I
Sbjct: 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH---PSYEVTSGTI-----L 60
Query: 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS----------------- 141
+ +LL+ L +E A L L QY
Sbjct: 61 FKGQ-------------DLLE--LEPDER--ARAGLFLAFQYPEEIPGVSNLEFLRSALN 103
Query: 142 --RKAKESKVDSIADSLSISTCK--------NTLTKHL----SGGQKKRLSIALELLSNP 187
R A+ + + D L + K L + + SGG+KKR I L P
Sbjct: 104 ARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP 163
Query: 188 SIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGT-MIICTLHQPSASLLNM--ADYLYVLT 243
+ LDE +GLD ++A +V + + + +I T +Q LLN DY++VL
Sbjct: 164 KLAILDEIDSGLD-IDALKIVAEGINRLREPDRSFLIITHYQ---RLLNYIKPDYVHVLL 219
Query: 244 EGYCTYQGTVPGLVPYLSDFGYQ 266
+G G L L + GY
Sbjct: 220 DGRIVKSGD-VELAKELEEKGYD 241
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 56.0 bits (135), Expect = 1e-08
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 56/242 (23%)
Query: 31 LYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
+YY + ++ IK D+ +GVF ++GPSG GK+ LL T +
Sbjct: 12 VYYGS-NHVIKGVDLKIPQNGVFA------LMGPSGCGKSTLL------------RTFNR 52
Query: 91 YIEINE-TRLQ---------------DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL 134
+E+NE R++ D +R+E + Q LT+ ++ VA +
Sbjct: 53 LLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDN--VAIGV 110
Query: 135 KLGNQYSRKAKESKV-----------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL 183
KL K + + D + D L N +LSGGQ++RL IA L
Sbjct: 111 KLNGLVKSKKELDERVEWALKKAALWDEVKDRL------NDYPSNLSGGQRQRLVIARAL 164
Query: 184 LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243
P I+ +DEPT +D + + +LL ++ + T+++ T H P A ++DY+ L
Sbjct: 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT-HSP-AQAARVSDYVAFLY 222
Query: 244 EG 245
G
Sbjct: 223 LG 224
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 55.7 bits (134), Expect = 1e-08
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 29/212 (13%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN---SGYIEINETRL 99
K L DI+ +++ ++GPSG GK+ L L R +N G + ++ +
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCL---NRMNDLISNVKIEGEVLLDGKNI 73
Query: 100 QDHRM----LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
D + LRK + Q N +++ ++ G + + ++D I +
Sbjct: 74 YDKDVDVVELRKRVGMVFQKPNPF--------PMSIYDNVAYGPRIHGIKDKKELDKIVE 125
Query: 155 -SLSIST----CKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
+L + K+ L K LSGGQ++RL IA + P +I +DEPT+ LD ++
Sbjct: 126 WALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLK 185
Query: 207 LVKLLRDMAHQGTMIICTLHQPSASLLNMADY 238
+ L+ ++ + T++I T + AS ++DY
Sbjct: 186 IEDLMVELKKEYTIVIVTHNMQQAS--RVSDY 215
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 55.9 bits (135), Expect = 1e-08
Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 41/248 (16%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
F ++SY Y Y ++ + D++ F + I+G +GSGK+ L+ + +P
Sbjct: 5 FDNVSY--TYQKGTPYEHQA---IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP 59
Query: 83 KKTETNSGYIEI-NETRLQDHRMLRKESCYIMQ--------DNLLQELL--------TVE 125
I I ++T+ + R +RK + Q D + +E++ ++
Sbjct: 60 TTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLD 119
Query: 126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS 185
E A L + +SR D +S S + +SGGQ ++++I L
Sbjct: 120 EVKNYAHRLLMDLGFSR-----------DVMSQSPFQ------MSGGQMRKIAIVSILAM 162
Query: 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTE 244
NP II LDEPT GLD + +++LL+ + + II H + + AD + V+ E
Sbjct: 163 NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221
Query: 245 GYCTYQGT 252
G Q +
Sbjct: 222 GSIVSQTS 229
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 55.4 bits (133), Expect = 2e-08
Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 15/189 (7%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEINETR 98
L +I+ + ++ ++GPSG GK+ L D++ G + I N
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
+ + R RK N L+++ ++++ + G + +K E S+ S
Sbjct: 83 ILELR--RKIGMVFQTPNPF--LMSIYDNISYGPKIH-GTKDKKKLDEIVEQSLKKSALW 137
Query: 159 STCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
+ K+ L + LSGGQ++RL IA L P++I +DEPT+ LD ++ + +L+ ++
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK 197
Query: 216 HQGTMIICT 224
T+II T
Sbjct: 198 ESYTIIIVT 206
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 56.3 bits (137), Expect = 2e-08
Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 31/192 (16%)
Query: 37 SYSIKSKDI--LKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTET 87
+ + I L ++S L + ++G SG+GK+ L+ + RP
Sbjct: 10 VFPQGGRTIHALNNVS-------LHIPAGEIFGVIGASGAGKSTLIRCINLLERP----- 57
Query: 88 NSGYIEINE---TRL--QDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYS 141
SG + ++ T L ++ R R++ I Q NLL TV ++ VA L+L
Sbjct: 58 TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR-TVFDN--VALPLELAGT-P 113
Query: 142 RKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201
+ +++V + + + +S + LSGGQK+R++IA L SNP ++ DE T+ LD
Sbjct: 114 KAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 202 LNATNLVKLLRD 213
++++LL+D
Sbjct: 174 ATTRSILELLKD 185
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 55.7 bits (134), Expect = 2e-08
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 53/228 (23%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET----RLQD 101
+K ++ +SK ++ I+GPSG GK+ L + + +G + + + D
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 102 HRMLRKESCYIMQ----------DNL--------------LQELLTVEESLTVAAHLKLG 137
+LRK+ + Q DN+ L+E+ VE+SL
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEI--VEKSL--------- 163
Query: 138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
RKA + D ++D L KN L LSGGQ++RL +A L P I+ LDEPT+
Sbjct: 164 ----RKA--ALWDEVSDRLD----KNALG--LSGGQQQRLCVARTLAVEPEILLLDEPTS 211
Query: 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
LD + L++++ T++I T + AS ++DY EG
Sbjct: 212 ALDPKATAKIEDLIQELRGSYTIMIVTHNMQQAS--RVSDYTMFFYEG 257
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 55.5 bits (134), Expect = 2e-08
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 39/172 (22%)
Query: 42 SKDILKDI-----SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
+ +L + +G FV+ ++G SG GK+ LL +LAG P E +G + E
Sbjct: 24 ERTVLNQLDLHIPAGQFVA-----VVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE 78
Query: 97 ----TRL--QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVD 150
TRL QD R+L + + DN+ L L Q+ A ++
Sbjct: 79 AREDTRLMFQDARLLPWKK---VIDNV---------------GLGLKGQWRDAALQA--- 117
Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
++ ++ N LSGGQK+R+++A L+ P ++ LDEP LD L
Sbjct: 118 --LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL 167
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 54.7 bits (132), Expect = 2e-08
Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 19/193 (9%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-------NET 97
+L+++S + E V+ GPSGSGK+ LL L P + G I + +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP-----DEGQILVRHEGEWVDLV 80
Query: 98 RLQDHRML---RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
+ +L R Y+ Q L+ + V +L V A L R+ +K +
Sbjct: 81 TAEPREVLEVRRTTIGYVSQ--FLRVIPRVS-ALDVVAEPLLARGVPREVARAKAADLLT 137
Query: 155 SLSISTCKNTLT-KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
L++ +L SGG+++R++IA + + I+ LDEPT LD N +V+L+R+
Sbjct: 138 RLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
Query: 214 MAHQGTMIICTLH 226
+G ++ H
Sbjct: 198 AKARGAALVGIFH 210
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 54.8 bits (132), Expect = 2e-08
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 39/201 (19%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEINETR 98
L DIS F +++ ++GPSG GK+ L D++ G R G I ++
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR-------VEGEILLDGEN 74
Query: 99 LQDHRM----LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV---- 149
+ D + LR+ + Q N + ++ E+ VA L++ + +V
Sbjct: 75 IYDPHVDVVELRRRVGMVFQKPNPFPK--SIFEN--VAYGLRVNGVKDKAYLAERVERSL 130
Query: 150 ------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
D + D L S LSGGQ++RL IA L P ++ +DEP + LD +
Sbjct: 131 RHAALWDEVKDRLHESALG------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIA 184
Query: 204 ATNLVKLLRDMAHQGTMIICT 224
+ +L+ ++ + T+II T
Sbjct: 185 TQKIEELIHELKARYTIIIVT 205
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 56.5 bits (137), Expect = 3e-08
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLL 118
++G SGSGK+ + ++AG +P SG I + ++ +L + QD L
Sbjct: 510 LVGGSGSGKSTIAKLVAGLYQPW-----SGEILFDGIPREEIPREVLANSVAMVDQDIFL 564
Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKV-DSIA------DSLSISTCKNTLTKHLSG 171
E TV ++LT+ R K++ + D I D+ N LSG
Sbjct: 565 FEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN-----LSG 618
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLD 200
GQ++RL IA L+ NPSI+ LDE T+ LD
Sbjct: 619 GQRQRLEIARALVRNPSILILDEATSALD 647
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 56.2 bits (136), Expect = 3e-08
Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 33/227 (14%)
Query: 40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99
+ IL IS + I+G SG+GK+ +L +L +R + NSG I I+ +
Sbjct: 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLL--FRF---YDVNSGSITIDGQDI 327
Query: 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
+D + LR+ + QD TV + T+A ++K G A +V + A++
Sbjct: 328 RDVTQQSLRRAIGIVPQD-------TVLFNDTIAYNIKYGRP---DATAEEVGAAAEAAQ 377
Query: 158 ISTCKNTL-----TK------HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
I +L T LSGG+K+R++IA +L NP I+ LDE T+ LD
Sbjct: 378 IHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437
Query: 207 LVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ LR+++ + T++I H+ S ++++ AD + VL G +GT
Sbjct: 438 IQAALREVSAGRTTLVIA--HRLS-TIID-ADEIIVLDNGRIVERGT 480
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 54.3 bits (131), Expect = 4e-08
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 52/232 (22%)
Query: 34 DTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI- 92
D H Y K K+ +K I F +++ ++GPSGSGK+ L L +G I
Sbjct: 25 DLHVYYGK-KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83
Query: 93 ----EINETRLQDHRMLRKESCYIMQ----------DNLL-----------QELL-TVEE 126
+IN + + M RK + Q +N+ + L VE
Sbjct: 84 YRGIDINRKEINVYEM-RKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET 142
Query: 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
SL AA D + D L K+ LT LSGGQ++RL IA +
Sbjct: 143 SLKQAALW---------------DQVKDDLH----KSALT--LSGGQQQRLCIARAIAVK 181
Query: 187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADY 238
P I+ +DEP + LD ++ L + + ++ T+II T + A+ +DY
Sbjct: 182 PDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAA--RASDY 231
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 55.6 bits (134), Expect = 5e-08
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 27/182 (14%)
Query: 36 HSYSIKSKDILKDISGVFVS---KELSVILGPSGSGKTKLLDILAGYRRPKKTETN---- 88
S+ + ++K + V + E+ I+G SG+GKT L I+AG P E N
Sbjct: 288 RYISVD-RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVG 346
Query: 89 SGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS-RKA--- 144
++++ + ++ + Q+ L TV ++LT A L+L ++ + KA
Sbjct: 347 DEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVIT 406
Query: 145 ------KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
E K + I D LS G++ R+++A L+ P I+ LDEPT
Sbjct: 407 LKMVGFDEEKAEEILDKY---------PDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457
Query: 199 LD 200
+D
Sbjct: 458 MD 459
Score = 54.4 bits (131), Expect = 1e-07
Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 63/264 (23%)
Query: 40 IKSKDILKDISGVFVSKELSV---------ILGPSGSGKTKLLDILAGYRRPKKTE---- 86
I+ K++ K G V K +S ILG SG+GK+ L+ +L G + + T
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 87 ------TNSGYIEI------------NETRLQD----------HRMLRKESCYIMQDNLL 118
GY+E ++ R +RK IM L
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIA-IM----L 115
Query: 119 QELLTVEESLTVAAH-LKLGNQYSRKAKESKVDSIADSLSISTCKNTLT---KHLSGGQK 174
Q + TV + L+ + + KE+ V D + + + +T + LSGG+K
Sbjct: 116 QRTFALYGDDTVLDNVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHIARDLSGGEK 174
Query: 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG------TMIICTLHQP 228
+R+ +A +L P + DEPT LD A KL+ + + +M++ T H P
Sbjct: 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTA----KLVHNALEEAVKASGISMVL-TSHWP 229
Query: 229 SASLLNMADYLYVLTEGYCTYQGT 252
+ +++D L G +GT
Sbjct: 230 EV-IEDLSDKAIWLENGEIKEEGT 252
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 54.0 bits (130), Expect = 6e-08
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 21/101 (20%)
Query: 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL 183
VEESL AA L ++ + S +D LSGGQ++RL IA +
Sbjct: 157 VEESLRRAA---LWDEVKDQLDSSGLD------------------LSGGQQQRLCIARAI 195
Query: 184 LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
+P +I +DEP + LD + + + L+ ++A + T++I T
Sbjct: 196 APDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVT 236
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 55.1 bits (134), Expect = 6e-08
Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 70/202 (34%)
Query: 43 KDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95
K ILKDIS LS +LG +G+GK+ LL I+AG + E
Sbjct: 20 KQILKDIS-------LSFFPGAKIGVLGLNGAGKSTLLRIMAG------VDK-----EFE 61
Query: 96 -ETRLQDHRMLRKESC-YIMQDNLLQELLTVEESLTVA-AHLK--------LGNQYS--- 141
E R Y+ Q+ L TV E++ A +K + Y+
Sbjct: 62 GEARPAPGI-----KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPD 116
Query: 142 --------RKAK-------------ESKVDSIADSLSISTC--KNTLTKHLSGGQKKRLS 178
+ + +S+++ D+L C + LSGG+++R++
Sbjct: 117 ADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR---CPPWDAKVTKLSGGERRRVA 173
Query: 179 IALELLSNPSIIFLDEPTTGLD 200
+ LL P ++ LDEPT LD
Sbjct: 174 LCRLLLEKPDMLLLDEPTNHLD 195
Score = 37.4 bits (88), Expect = 0.022
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
LSGG++ RL +A L +++ LDEPT LD
Sbjct: 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
Score = 30.9 bits (71), Expect = 2.2
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
I+GP+G+GK+ L ++ G +P +SG I+I ET
Sbjct: 355 IIGPNGAGKSTLFKMITGQEQP-----DSGTIKIGET 386
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 52.8 bits (127), Expect = 7e-08
Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN- 95
Y+ +LK++S + E I+G +G+GK+ L ILA +R E G IEI+
Sbjct: 15 RYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRF---LEAEEGKIEIDG 69
Query: 96 -ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
+ LR I QD L S T+ ++L ++YS + I
Sbjct: 70 IDISTIPLEDLRSSLTIIPQDPTLF-------SGTIRSNLDPFDEYSD-------EEIYG 115
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
+L +S +LS GQ++ L +A LL P ++ LDE T +DY + K +R+
Sbjct: 116 ALRVSEGGL----NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171
Query: 215 AHQGTMII 222
T++
Sbjct: 172 FTNSTILT 179
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 55.2 bits (134), Expect = 7e-08
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 27/176 (15%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPK--KTETNSGYIEINE----TRLQDH-RMLRKESCYIM 113
ILGP+G GKT + IL+G P E + E+ + T LQ++ + L ++
Sbjct: 104 ILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163
Query: 114 QDNLLQELL------TVEESLTVAAHLKLGNQYSRKAKES-KVDSIADSLSISTCKNTLT 166
+L+ V E L +K E K+D + + L + +
Sbjct: 164 HKPQYVDLIPKVFKGKVRELL-------------KKVDERGKLDEVVERLGLENILDRDI 210
Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
LSGG+ +R++IA LL + F DEPT+ LD N+ +L+R++A +++
Sbjct: 211 SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLV 266
Score = 36.3 bits (85), Expect = 0.054
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 40/152 (26%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET---RLQDHRMLRKESCYIM 113
E+ I+GP+G GKT +LAG +P + G ++ + Q YI
Sbjct: 366 EVIGIVGPNGIGKTTFAKLLAGVLKP-----DEGEVDPELKISYKPQ----------YIK 410
Query: 114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS-----IADSLSISTCKNTLTKH 168
D + TVE+ L R + S I L + + K
Sbjct: 411 PD---YDG-TVEDLL-------------RSITDDLGSSYYKSEIIKPLQLERLLDKNVKD 453
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
LSGG+ +R++IA L + + LDEP+ LD
Sbjct: 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 52.6 bits (126), Expect = 8e-08
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 19/185 (10%)
Query: 63 GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122
G +G+GKT LL ++AG P+K E I +D +K+ C++ + + L
Sbjct: 34 GSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK----KDLCTYQKQLCFVGHRSGINPYL 89
Query: 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALE 182
T+ E+ H G + + S+ + LS GQK+++++
Sbjct: 90 TLRENCLYDIHFSPGAV--------GITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRL 141
Query: 183 LLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242
+S + LDEP LD L+ ++ +++ +G ++ T HQ LN ADY
Sbjct: 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADY---- 195
Query: 243 TEGYC 247
E Y
Sbjct: 196 -EEYH 199
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 53.2 bits (128), Expect = 8e-08
Identities = 48/180 (26%), Positives = 69/180 (38%), Gaps = 30/180 (16%)
Query: 38 YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
Y IL +IS + E +I GPSG GK+ LL I+A P
Sbjct: 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP----------TSGTL 64
Query: 98 RLQDHRML-------RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVD 150
+ + R++ Y Q L TV +L Q + +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLF-------GDTVYDNLIFPWQIRNQQPDPA-- 115
Query: 151 SIADSLS-ISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
D L + LTK+ LSGG+K+R+S+ L P ++ LDE T+ LD N N
Sbjct: 116 IFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 52.5 bits (127), Expect = 1e-07
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMAHQGTMIICTLH 226
LSGGQK+R+S+A + S+ I LD+P + +D ++ + +L + + T I+ T H
Sbjct: 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVT-H 186
Query: 227 QPSASLLNMADYLYVLTEG 245
Q LL AD + VL G
Sbjct: 187 QL--QLLPHADQIVVLDNG 203
Score = 36.7 bits (86), Expect = 0.016
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
S ++ LKDI+ EL I+GP GSGK+ LL L G
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG 53
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 53.1 bits (127), Expect = 1e-07
Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 23/196 (11%)
Query: 55 SKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEIN--ETRLQDHRML 105
+K++ +GPSG GK+ LL D++ G K E Y + N ++++ ++
Sbjct: 45 AKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG----AKVEGRLLYRDRNIYDSQINSVKLR 100
Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
R+ + N + ++ E++ A N Y E DS+ + K+ L
Sbjct: 101 RQVGMVFQRPNPFPK--SIYENIAFAPR---ANGYKGNLDELVEDSLRRAAIWEEVKDKL 155
Query: 166 TKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
+ LSGGQ++RL IA + P ++ +DEP + LD ++ + +L ++ Q T+I+
Sbjct: 156 KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIM 215
Query: 223 CTLHQPSASLLNMADY 238
T + AS +AD+
Sbjct: 216 VTHNMQQAS--RVADW 229
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 53.1 bits (127), Expect = 1e-07
Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 14/229 (6%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET-NSGYIEINETRLQDHRM 104
L++I+ V E I+G +GSGK+ L L G RP+K + SG + ++LQ
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG--- 74
Query: 105 LRKESCYIMQDNLLQEL-LTVEESLTVAA-HLKLGNQYSRKAKESKVDSIADSLSISTCK 162
+RK + Q+ Q + TVEE L +L L RK +VD + + +
Sbjct: 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK----RVDRALAEIGLEKYR 130
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
+ K LSGGQ + +++A L P + DE T+ LD + +++ ++ + +G I+
Sbjct: 131 HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIV 190
Query: 223 CTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV--PYLSDFGYQCPS 269
H + L+ AD + V+ G +G ++ L G PS
Sbjct: 191 YITH--NLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPS 237
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 53.3 bits (128), Expect = 1e-07
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 17/197 (8%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRM 104
L +IS ++G +GSGK+ L+ +P +GY ET ++ +
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQ----YSRKAKESKVDSIADSLSIST 160
LRK+ + Q E E TV ++ G + +AKE + +
Sbjct: 83 LRKKVSLVFQ---FPEAQLFEN--TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED 137
Query: 161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220
+ LSGGQ +R++IA + P I+ LDEP GLD +++L +D G
Sbjct: 138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHT 197
Query: 221 IICTLHQPSASLLNMAD 237
+I H NM D
Sbjct: 198 VILVTH-------NMDD 207
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 52.9 bits (127), Expect = 1e-07
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 55/215 (25%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKT-----ETNSGYIE 93
+K++ +++ +GPSG GK+ +L D++ G+R K + ++
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 94 INETRLQDHRMLRK-----ESCYIMQDNL------------LQELLTVEESLTVAAHLKL 136
E R + + +K +S Y DN+ + EL VE SL AA L
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIY---DNIAYGARINGYKGDMDEL--VERSLRQAA---L 137
Query: 137 GNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
++ K K+S LS LSGGQ++RL IA + P +I +DEP
Sbjct: 138 WDEVKDKLKQS-------GLS-----------LSGGQQQRLCIARAIAVQPEVILMDEPC 179
Query: 197 TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
+ LD ++ + +L+ ++ Q T+II T + A+
Sbjct: 180 SALDPISTLRIEELMHELKEQYTIIIVTHNMQQAA 214
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 52.2 bits (126), Expect = 2e-07
Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 25/218 (11%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
LKDIS E I+G +G+GK+ LL ++AG +P SG +++
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-----SGKVKVTG-------- 88
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
K + I LT E++ + L LG +RK + KVD I + + +
Sbjct: 89 --KVAPLIELGAGFDPELTGRENIYLRG-LILG--LTRKEIDEKVDEIIEFAELGDFIDQ 143
Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL---VKLLRDMAHQGTMI 221
K S G RL+ ++ P I+ LDE L +A ++ L ++ + I
Sbjct: 144 PVKTYSSGMYARLAFSVATHVEPDILLLDE---VLAVGDAAFQEKCLERLNELVEKNKTI 200
Query: 222 ICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPY 259
+ H A + D L G +G+ ++P
Sbjct: 201 VLVSHDLGA-IKQYCDRAIWLEHGQIRMEGSPEEVIPA 237
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 52.3 bits (126), Expect = 2e-07
Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 55/209 (26%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDIL----AGYRRPKKTETNSGYIEINETRL-- 99
LK+I+ +++ +GPSG GK+ LL Y P++ G I ++ +
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY--PEQRAE--GEILLDGENILT 84
Query: 100 --QDHRMLRKESCYIMQ----------DNL-----LQELLT-------VEESLTVAAHLK 135
QD +LR + + Q DN+ L E L+ VE +LT AA
Sbjct: 85 PKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAA--- 141
Query: 136 LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP 195
L N+ K +S SLS GGQ++RL IA + P ++ LDEP
Sbjct: 142 LWNEVKDKLHQS-----GYSLS-------------GGQQQRLCIARGIAIRPEVLLLDEP 183
Query: 196 TTGLDYLNATNLVKLLRDMAHQGTMIICT 224
+ LD ++ + +L+ ++ T++I T
Sbjct: 184 CSALDPISTGRIEELITELKQDYTVVIVT 212
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 52.8 bits (127), Expect = 2e-07
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
LSGGQK+R+++A L P + DEPT GLD ++++ ++ QG II H
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 52.1 bits (125), Expect = 2e-07
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHR 103
+K +S + I+G +GSGK+ L +LAG P SG I IN+ L D+
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----TSGEILINDHPLHFGDYS 83
Query: 104 MLRKESCYIMQD--NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS---- 157
K I QD L L + + L L+L + + + I ++L
Sbjct: 84 FRSKRIRMIFQDPNTSLNPRLRIGQILD--FPLRLNTDLEPEQRRKQ---IFETLRMVGL 138
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
+ N L+ GQK+R+++A L+ P II DE LD + L+ L+ ++ +
Sbjct: 139 LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK 198
Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEG 245
+ + Q + +++D + V+ EG
Sbjct: 199 QGISYIYVTQHIGMIKHISDQVLVMHEG 226
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 52.3 bits (125), Expect = 2e-07
Identities = 65/264 (24%), Positives = 104/264 (39%), Gaps = 73/264 (27%)
Query: 1 MKSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV 60
M E+ E ++H L +D+S +YY K + DIS ++
Sbjct: 4 MVREKIE-IAPFPEAKEHI-LEVKDLS---IYYG-------EKRAVNDISMDIEKHAVTA 51
Query: 61 ILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEINETRLQDHRM----LRKES 109
++GPSG GK+ L D++ R + G I + D + LR+E
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSAR-------SEGEILYEGLNILDSNINVVNLRREI 104
Query: 110 CYIMQ----------DNLLQELL------------TVEESLTVAAHLKLGNQYSRKAKES 147
+ Q +N+ L VEESLT AA
Sbjct: 105 GMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW------------- 151
Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
D + D L S LSGGQ++RL IA L P+++ LDEP + LD ++ +
Sbjct: 152 --DEVKDRLHSSALS------LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI 203
Query: 208 VKLLRDMAHQGTMIICTLHQPSAS 231
+L+ ++ + ++II T + A
Sbjct: 204 EELITELKEEYSIIIVTHNMQQAL 227
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 52.8 bits (127), Expect = 3e-07
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--------NETRLQDHRMLRKE 108
E+ VI+G SGSGK+ L+ +L P G I + + L++ R RK+
Sbjct: 55 EIFVIMGLSGSGKSTLVRLLNRLIEP-----TRGEILVDGKDIAKLSAAELRELR--RKK 107
Query: 109 SCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH 168
+ Q L TV E+ VA L++ + +E + + + + +
Sbjct: 108 ISMVFQSFALLPHRTVLEN--VAFGLEVQGV-PKAEREERALEALELVGLEGYADKYPNE 164
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
LSGG ++R+ +A L ++P I+ +DE + LD L T +
Sbjct: 165 LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 52.5 bits (127), Expect = 4e-07
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 26/203 (12%)
Query: 60 VILGPSGSGKTKLLDILAG---YRRPKKTETNSGYIEIN--ETRLQDHRMLRKESCYIMQ 114
++GPSG+GKT LL+ L G Y+ G ++IN E R D RK ++ Q
Sbjct: 380 ALVGPSGAGKTSLLNALLGFLPYQ---------GSLKINGIELRELDPESWRKHLSWVGQ 430
Query: 115 DNLLQELLTVEESLTVAAHL----KLGNQYSRKAKESK-VDSIADSLSISTCKNTLTKHL 169
+ L T+ +++ + +L Q A S+ + + L L
Sbjct: 431 NPQLPHG-TLRDNVLLGNPDASDEQL-QQALENAWVSEFLPLLPQGLDTPIGDQAAG--L 486
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229
S GQ +RL++A LL ++ LDEPT LD + +++ L + + T ++ T HQ
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT-HQLE 545
Query: 230 ASLLNMADYLYVLTEGYCTYQGT 252
L D ++V+ +G QG
Sbjct: 546 D-LAQW-DQIWVMQDGQIVQQGD 566
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 49.3 bits (119), Expect = 6e-07
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
LS G+++ + IA L N ++ LDEPT L L K++R + QG +I
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Score = 30.1 bits (69), Expect = 1.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
L +S E+ +LG +G+GK+ L+ IL+G +P +SG I ++ +
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-----DSGEILVDGKEVS 65
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 52.0 bits (125), Expect = 6e-07
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH---LSGGQK 174
L L T+E+ L L L R+A ++ + D + I LT + LSGG++
Sbjct: 105 LNPLHTLEKQL--YEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162
Query: 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN 234
+R+ IA+ LL+ P ++ DEPTT LD +++LLR++ + M + + + +
Sbjct: 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRK 222
Query: 235 MADYLYVLTEGYCTYQGT 252
+AD + V+ G C Q
Sbjct: 223 LADRVAVMQNGRCVEQNR 240
Score = 45.5 bits (108), Expect = 7e-05
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 45/181 (24%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTK----LLDILAGYRRPKKTETNSGYIEINETR 98
++K+IS E ++G SGSGK+ LL ++ + G I +
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN----------SQGEIWFDGQP 348
Query: 99 LQD---HRML--RKESCYIMQD---------NLLQELLTVEESLTVAAHLKLGNQYSRKA 144
L + ++L R + QD N+LQ +EE L V H S
Sbjct: 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ---IIEEGLRV--HQP---TLSAAQ 400
Query: 145 KESKVDSIADSLSISTCKNTLTKH-----LSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199
+E +V ++ + + + + T+H SGGQ++R++IA L+ PS+I LDEPT+ L
Sbjct: 401 REQQVIAVMEEVGL----DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSL 456
Query: 200 D 200
D
Sbjct: 457 D 457
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 49.9 bits (120), Expect = 6e-07
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 169 LSGGQKKRLSIALELL------SNPSIIFLDEPTTGLDYLNATN-LVKLLRDMAHQGT-- 219
SGG+K S+ + L SN I+ LDEPTT LD N L +++ + Q
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175
Query: 220 MIICTLHQPSASLLNMADYLY 240
+I+ T + L++ AD++Y
Sbjct: 176 LIVITHDE---ELVDAADHIY 193
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 51.0 bits (122), Expect = 8e-07
Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 59/217 (27%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
LK +S K ++ ++GPSG GK+ L L K G +E++ + +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 105 ---LRKESCYIMQ----------DN--------------LLQELL----------TVEES 127
LRK + Q +N LL LL VE S
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNP 187
L AA D + D L N L LSGGQ++RL IA L +P
Sbjct: 181 LRQAALW---------------DEVNDRLD----DNALG--LSGGQQQRLCIARCLAVDP 219
Query: 188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
+I +DEP + LD + + + L+ ++A + T+++ T
Sbjct: 220 EVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVT 256
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 50.7 bits (122), Expect = 8e-07
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--------NETRLQDHRMLRKE 108
E+ VI+G SGSGK+ LL + P SG + I + L++ R RK+
Sbjct: 51 EIFVIMGLSGSGKSTLLRCINRLIEP-----TSGKVLIDGQDIAAMSRKELRELR--RKK 103
Query: 109 SCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH 168
+ Q L TV E+ VA L++ R +E + + + + ++
Sbjct: 104 ISMVFQSFALLPHRTVLEN--VAFGLEVQGV-PRAEREERAAEALELVGLEGWEHKYPDE 160
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
LSGG ++R+ +A L +P I+ +DE + LD L
Sbjct: 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 49.1 bits (118), Expect = 8e-07
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
LSGG+++RL+ A LL P +FLDE T+ LD + L +LL+++ G +I H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP 148
Query: 229 S 229
S
Sbjct: 149 S 149
Score = 32.9 bits (76), Expect = 0.22
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 60 VILGPSGSGKTKLLDILAG 78
+I GPSG+GK+ L LAG
Sbjct: 31 LITGPSGTGKSSLFRALAG 49
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 51.7 bits (124), Expect = 8e-07
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 29/222 (13%)
Query: 34 DTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
D S+S++ +IL + G G+G+T+L+ L G P K E G +
Sbjct: 277 DDVSFSLRRGEILG-------------VAGLVGAGRTELVQALFG-AYPGKFE---GNVF 319
Query: 94 INETRLQDH---RMLRKESCYIMQDNLLQEL---LTVEESLTVAAHLKLGNQYSRKAKES 147
IN + + +R + +D + L V +++T++ LK R +
Sbjct: 320 INGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSV-LKSFCFKMRIDAAA 378
Query: 148 KVDSIADS---LSISTCKNTL-TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
++ I + L + T L LSGG +++ +A LL+NP ++ LDEPT G+D
Sbjct: 379 ELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
+ KL+ +A +G II + A +L ++D + V+ EG
Sbjct: 439 KYEIYKLINQLAQEGVAII-VVSSELAEVLGLSDRVLVIGEG 479
Score = 48.3 bits (115), Expect = 9e-06
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 39/210 (18%)
Query: 43 KDILKDISGVFVSKELSVIL---------GPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
K I+K GV + + + G +G+GK+ L+ IL+G P T Y
Sbjct: 5 KGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWS 63
Query: 94 INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA--------- 144
+ + + R + I+ QEL V E L+VA ++ LGN+ +
Sbjct: 64 GSPLKASNIRDTERAGIVIIH----QELTLVPE-LSVAENIFLGNEITLPGGRMAYNAMY 118
Query: 145 -------KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
+E ++D+ + + GGQ++ + IA L ++ LDEP++
Sbjct: 119 LRAKNLLRELQLDADNVTRPVG--------DYGGGQQQLVEIAKALNKQARLLILDEPSS 170
Query: 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQ 227
L L+ ++RD+ G + H+
Sbjct: 171 SLTEKETEILLDIIRDLKAHGVACVYISHK 200
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 51.5 bits (124), Expect = 9e-07
Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 49/186 (26%)
Query: 60 VILGPSGSGKTKLLDILAG---YRRPKKTETNSGYIEINETRLQDHRM------------ 104
+I G SG+GKT LL LAG + SG I + D +
Sbjct: 423 LITGESGAGKTSLLRALAGLWPWG--------SGRISMP----ADSALLFLPQRPYLPQG 470
Query: 105 -LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
LR+ CY + E + V + LG+ R +E + D +
Sbjct: 471 TLREALCYPNAAPDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRV----------- 515
Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
LSGG+++RL+ A LL P +FLDE T+ LD L +LL++ +I
Sbjct: 516 -----LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVIS 569
Query: 224 TLHQPS 229
H+P+
Sbjct: 570 VGHRPT 575
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 51.3 bits (123), Expect = 1e-06
Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 28/256 (10%)
Query: 7 ELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKS-KDILKDISGVFVSKELSVILGPS 65
EL D PR+ + + + + D S++ + +L++I+ S+ ++G +
Sbjct: 320 ELMD---GPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHT 376
Query: 66 GSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLT 123
GSGK+ L +L GY + G I ++ L H +LR+ + QD
Sbjct: 377 GSGKSTLASLLMGYYPLTE-----GEIRLDGRPLSSLSHSVLRQGVAMVQQD-------P 424
Query: 124 VEESLTVAAHLKLGNQYSRKA-----KESKVDSIADSLS--ISTCKNTLTKHLSGGQKKR 176
V + T A++ LG S + + ++ +A SL + T +LS GQK+
Sbjct: 425 VVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQL 484
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
L++A L+ P I+ LDE T +D + + L + T+++ H+ S + A
Sbjct: 485 LALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIA-HR--LSTIVEA 541
Query: 237 DYLYVLTEGYCTYQGT 252
D + VL G QGT
Sbjct: 542 DTILVLHRGQAVEQGT 557
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 50.5 bits (121), Expect = 1e-06
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 30/162 (18%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120
+LGPSG GKT +L ++AG +P G I I+ + + +++ C + Q
Sbjct: 37 LLGPSGCGKTTVLRLVAGLEKP-----TEGQIFIDGEDVTHRSIQQRDICMVFQ------ 85
Query: 121 LLTVEESLTVAAHLKLGNQ--YSRK----AKESKVDSIADSLSI---STCKNTLTKHLSG 171
S + H+ LG Y K KE + + ++L + + ++ +SG
Sbjct: 86 ------SYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISG 139
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
GQ++R+++A L+ P ++ DEP + LD NL + +R+
Sbjct: 140 GQQQRVALARALILKPKVLLFDEPLSNLD----ANLRRSMRE 177
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 51.2 bits (123), Expect = 1e-06
Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
T +Y K L++I+ + + ++G SGSGK+ + ++L + + + G I +
Sbjct: 348 TFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF-----YDIDEGEILL 402
Query: 95 NETRLQDHRM--LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
+ L+D+ + LR + + Q+ +L + T+ ++ A QYSR+ E +
Sbjct: 403 DGHDLRDYTLASLRNQVALVSQNVHLFND--TIANNIAYAR----TEQYSREQIE-EAAR 455
Query: 152 IADSLS-ISTCKNTLTK-------HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+A ++ I+ N L LSGGQ++R++IA LL + I+ LDE T+ LD
Sbjct: 456 MAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 50.0 bits (119), Expect = 1e-06
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
LSGGQ++RL IA L P II DEPT+ LD ++ + L+ ++ T++I T +
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQ 214
Query: 229 SASLLNMADY 238
A+ ++DY
Sbjct: 215 QAA--RISDY 222
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 48.1 bits (115), Expect = 1e-06
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 169 LSGGQKKRLSIALEL----LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
LSGG+K+ ++AL L L + LDE GLD + L + + + +G +I
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 225 LHQPSASLLNMADYLY 240
H P L +AD L
Sbjct: 138 THLP--ELAELADKLI 151
Score = 28.9 bits (65), Expect = 4.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 53 FVSKELSVILGPSGSGKTKLLD 74
F L++I GP+GSGK+ +LD
Sbjct: 18 FGEGSLTIITGPNGSGKSTILD 39
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 49.5 bits (119), Expect = 2e-06
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
LSGGQ++R+ IA L NP +I DEP + LD ++ LL+D+
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL 155
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 49.4 bits (118), Expect = 2e-06
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 161 CKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
CK+ L + LSGGQ++RL IA + P +I +DEP + LD ++ + + + ++
Sbjct: 144 CKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN 203
Query: 218 GTMIICTLHQPSASLLNMADYLYV--LTEGY--CTYQGTVPGLVPYLSDFG-----YQCP 268
T++I T H NM + V +T + +G G V YL +F + P
Sbjct: 204 FTIVIVT-H-------NMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSP 255
Query: 269 SNYNPADYV 277
DY+
Sbjct: 256 KQKATQDYI 264
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 50.2 bits (120), Expect = 2e-06
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 57 ELSVILGPSGSGKTKLLDILAGY----RRPKKTETNSGYIEINETRLQDHRMLRKES-CY 111
E+ V++G SGSGK+ LL + G R + G +++ R LR
Sbjct: 51 EICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSM 110
Query: 112 IMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
+ Q L TVEE+ VA L++ + + +VD + + ++ + LSG
Sbjct: 111 VFQQFALLPWRTVEEN--VAFGLEMQGM-PKAERRKRVDEQLELVGLAQWADRKPGELSG 167
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
G ++R+ +A + I+ +DEP + LD L T L
Sbjct: 168 GMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQL 203
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 49.3 bits (118), Expect = 2e-06
Identities = 58/229 (25%), Positives = 91/229 (39%), Gaps = 72/229 (31%)
Query: 31 LYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPK 83
L+Y K L DIS ++ +GPSG GK+ LL D++ R
Sbjct: 33 LFYG-------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI-- 83
Query: 84 KTETNSGYIEINETRLQDHRM----LRK-------------ESCY-----------IMQD 115
G I ++ + D ++ LR+ +S Y I
Sbjct: 84 -----EGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNR 138
Query: 116 NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175
+L E VE SL AA D + D L +N LSGGQ++
Sbjct: 139 RVLDE--AVERSLRGAALW---------------DEVKDRLH----ENAFG--LSGGQQQ 175
Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
RL IA + P ++ LDEPT+ LD ++ + +L+ ++ + T++I T
Sbjct: 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVT 224
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 48.9 bits (117), Expect = 2e-06
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 130 VAAHLKLGNQYSRKAKESKVD-SIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLS 185
V A LKL ++K + V+ S+ + + K+ L K LSGGQ++RL IA +
Sbjct: 106 VVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV 165
Query: 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
P ++ +DEP + LD ++ + L+ ++ T++I T
Sbjct: 166 EPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVT 204
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 49.1 bits (117), Expect = 2e-06
Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 67/227 (29%)
Query: 31 LYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL---DILAGYRRPKKTET 87
L+Y SK IL DI+ +E++ +GPSG GK+ L + + + K +
Sbjct: 13 LWYG-------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVK- 64
Query: 88 NSGYIEINE----TRLQDHRMLRKESCYIMQ----------DNL---------------L 118
G ++I+ + + +LR + + Q DN+ L
Sbjct: 65 --GELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKL 122
Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178
E+ VE+SLT + + D L S + LSGGQ++RL
Sbjct: 123 DEI--VEKSLT---------------SVGLWEELGDRLKDSAFE------LSGGQQQRLC 159
Query: 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMIICT 224
IA + P+++ +DEP + LD + ATN+++ L++++ T+I+ T
Sbjct: 160 IARAIAVKPTMLLMDEPCSALDPV-ATNVIENLIQELKKNFTIIVVT 205
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 49.0 bits (116), Expect = 2e-06
Identities = 39/231 (16%), Positives = 71/231 (30%), Gaps = 8/231 (3%)
Query: 2 KSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVI 61
+ F L +I L ++ + I ++
Sbjct: 28 LGLTLDRGLNVGIKLLPFLLDENEIEIP-LEFEIEEFLIDGIRYRYGFELDKEDILEELL 86
Query: 62 LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
+ + K E + E L + L L+ L
Sbjct: 87 YEYRKGEELLFERERSKESFEKSPEKKRELRGLREVLLLLNLSLSSFL----LLASLEIL 142
Query: 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
L++ + + V + + L K +S G K+ L++ L
Sbjct: 143 LSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLL 202
Query: 182 ELLSN---PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229
LLS S++ +DEP GL LV+LL++++ +G +I T H P
Sbjct: 203 ALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPL 253
Score = 31.6 bits (71), Expect = 1.1
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 58 LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKE 108
L+VI+GP+GSGK+ LL LA +L + E
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENE 51
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 50.0 bits (120), Expect = 2e-06
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 25/217 (11%)
Query: 46 LKDISGV-FVSKELSV----ILGPSG---SGKTKLLDILAGYRRPKKTETNSGYIEINET 97
++D++G F + L V ILG +G +G+T+L + L G R + EIN
Sbjct: 271 VEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL 330
Query: 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLT--VAAHLKLGNQ--YSRKAKESKV-DSI 152
L + Y+ +D L ++ L V A L + + + A+E+ V +
Sbjct: 331 STAQR--LARGLVYLPEDRQ-SSGLYLDAPLAWNVCA-LTHNRRGFWIKPARENAVLERY 386
Query: 153 ADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+L+I + LSGG ++++ IA L ++P ++ +DEPT G+D ++ +L+
Sbjct: 387 RRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLI 446
Query: 212 RDMAHQGT---MIICTLHQPSASLLNMADYLYVLTEG 245
R +A Q I L + + MAD + V+ +G
Sbjct: 447 RSIAAQNVAVLFISSDLEE----IEQMADRVLVMHQG 479
Score = 47.4 bits (113), Expect = 2e-05
Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 45/229 (19%)
Query: 40 IKSKDILKDISGVFVSK---------ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
+ ++ I K SGV V K E+ +LG +G+GK+ L+ I+AG P +SG
Sbjct: 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-----DSG 66
Query: 91 YIEINETRL------QDHRMLRKESCYIM-QDNLLQELLTVEESLTV--AAHLKLGNQYS 141
+EI + H++ Y++ Q+ LL L+V+E++ +
Sbjct: 67 TLEIGGNPCARLTPAKAHQL----GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMK 122
Query: 142 RKAKES----KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
+ +DS A SL ++ ++ + I L+ + I+ LDEPT
Sbjct: 123 QLLAALGCQLDLDSSAGSLEVA-------------DRQIVEILRGLMRDSRILILDEPTA 169
Query: 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
L L +R++ QG I+ H+ + +AD + V+ +G
Sbjct: 170 SLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGT 217
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 50.4 bits (120), Expect = 3e-06
Identities = 59/240 (24%), Positives = 100/240 (41%), Gaps = 52/240 (21%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK-------------------- 84
I KD++ SK+ + I+G +GSGK+ ++ +L + K
Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242
Query: 85 ---TETNSGYIEINETRLQ------DHRMLRKESCYIMQDNL---------LQELLTVEE 126
E N G +NE L + + K S I+ D + L+ L ++
Sbjct: 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVS 1302
Query: 127 ------SLTVAAHLKLGNQ------YSRKAKESKVDSIADSL--SISTCKNTLTKHLSGG 172
++++ ++K G + R K + +D +SL T K LSGG
Sbjct: 1303 QEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGG 1362
Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL 232
QK+R++IA LL P I+ LDE T+ LD + + K + D+ + I T+ AS+
Sbjct: 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASI 1422
Score = 44.2 bits (104), Expect = 2e-04
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
LSGGQK+R+SIA ++ NP I+ LDE T+ LD
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLD 611
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 48.9 bits (116), Expect = 3e-06
Identities = 67/276 (24%), Positives = 119/276 (43%), Gaps = 44/276 (15%)
Query: 41 KSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
K D+ L +S E I+G +GSGK+ ++ G E G ++I+
Sbjct: 16 KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL-----FEEFEGKVKIDGEL 70
Query: 99 LQDHRM--LRKESCYIMQDNLLQEL-LTVEESLTVAAHLKLGNQ-YSRKAKESKVDSIAD 154
L + LR++ + Q+ Q + TVE+ + + NQ R+ +VD
Sbjct: 71 LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG----MENQGIPREEMIKRVDEALL 126
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL---L 211
++++ K LSGGQK+R+++A + P II LDE T+ LD ++++ +
Sbjct: 127 AVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186
Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG-----------YCTYQGTVP-GL-VP 258
++ + I +AS +D + V+ G + T + V GL VP
Sbjct: 187 KEKYQLTVLSITHDLDEAAS----SDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVP 242
Query: 259 YLSDF-------GYQCPSNYNPADYVIEVSLEADRM 287
+ S+ G+ P Y D ++E L AD++
Sbjct: 243 FSSNLMKDLRKNGFDLPEKYLSEDELVE--LLADKL 276
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 48.8 bits (117), Expect = 3e-06
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
SGG ++RL IA L+++P ++F+DEPT GLD L+ LLR
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR 195
Score = 32.2 bits (74), Expect = 0.70
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 22/67 (32%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120
I+G SGSGKT LL+ L+ P ++G + Y M+D L++
Sbjct: 37 IVGESGSGKTTLLNALSARLAP-----DAGEVH-----------------YRMRDGQLRD 74
Query: 121 LLTVEES 127
L + E+
Sbjct: 75 LYALSEA 81
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 49.5 bits (119), Expect = 3e-06
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS---LSISTCKNTLT-KHLSGGQKKR 176
++ V +++T+AA L SR +++ +I +S L + T L LSGG +++
Sbjct: 355 VMGVGKNITLAA-LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK 413
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL---L 233
+A LL NP I+ LDEPT G+D + KL+ + QG II S+ L L
Sbjct: 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVI----SSELPEVL 469
Query: 234 NMADYLYVLTEG 245
++D + V+ EG
Sbjct: 470 GLSDRVLVMHEG 481
Score = 47.6 bits (114), Expect = 1e-05
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 63 GPSGSGKTKLLDILAG-YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
G +G+GK+ L+ +L+G Y P T E E + + R + I+ QEL
Sbjct: 38 GENGAGKSTLMKVLSGVY--PHGTYEGEIIFEGEELQASNIRDTERAGIAIIH----QEL 91
Query: 122 LTVEESLTVAAHLKLGNQYSRK------AKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175
V+E L+V ++ LGN+ + A + + L + T +L GQ++
Sbjct: 92 ALVKE-LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQ 150
Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
+ IA L ++ LDEPT L L+ ++RD+ G I C
Sbjct: 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHG--IAC 196
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 47.3 bits (113), Expect = 3e-06
Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 50/196 (25%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
L+++ L V+ G SGSGK+ L+ N G + RL
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV--------------NEGLYASGKARLISFLPK 56
Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
+ I D L Q L+ V L +L LG +K ST
Sbjct: 57 FSRNKLIFIDQL-QFLIDV--GLG---YLTLG----QKL--------------ST----- 87
Query: 166 TKHLSGGQKKRLSIALELLSNP--SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
LSGG+ +R+ +A EL S P ++ LDEP+TGL + L+++++ + G +I
Sbjct: 88 ---LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144
Query: 224 TLHQPSASLLNMADYL 239
H +L+ AD++
Sbjct: 145 IEHNL--DVLSSADWI 158
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 48.1 bits (114), Expect = 4e-06
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 25/213 (11%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
L +I+ + +L++I+G G GK+ LL + G + + + + +E + R
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 106 RKES-CYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI------ 158
+ S Y Q L TVEE++T G+ ++++ ++ D+ + I
Sbjct: 77 NRYSVAYAAQKPWLLNA-TVEENIT------FGSPFNKQRYKAVTDACSLQPDIDLLPFG 129
Query: 159 -STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL-----DYLNATNLVKLLR 212
T +LSGGQ++R+ +A L N +I+FLD+P + L D+L ++K L+
Sbjct: 130 DQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189
Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
D + T+++ T H+ L AD++ + +G
Sbjct: 190 D--DKRTLVLVT-HK--LQYLPHADWIIAMKDG 217
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 49.8 bits (119), Expect = 4e-06
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 24/217 (11%)
Query: 38 YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
+ ++ K +L+D+S +L+V+LG +GSGK+ LL L EI+E
Sbjct: 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ------------FEISEG 715
Query: 98 RLQDHRMLR--KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
R+ R + + +IM + +L +E AA L + S+ E+ + +
Sbjct: 716 RVWAERSIAYVPQQAWIMNATVRGNILFFDEE--DAARLADAVRVSQL--EADLAQLGGG 771
Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDM 214
L + + +LSGGQK R+S+A + +N + LD+P + LD +V+
Sbjct: 772 LETEIGEKGV--NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA 829
Query: 215 AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
T ++ T HQ ++ ADY+ L +G + G
Sbjct: 830 LAGKTRVLAT-HQ--VHVVPRADYVVALGDGRVEFSG 863
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 48.6 bits (116), Expect = 5e-06
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 14/177 (7%)
Query: 61 ILGPSGSGKTK----LLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
I+G SGSGK++ L+ +LA R + T +G +N + +++ ++ I QD
Sbjct: 47 IVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106
Query: 117 L--LQELLTVEESLTVAAHLKLGNQYSRK-AKESKVDSIADSLSISTCKNTLTKH---LS 170
+ L + V E L L L S+ A E V + D++ + + + + S
Sbjct: 107 MTSLNPYMRVGEQLMEV--LMLHKGMSKAEAFEESV-RMLDAVKMPEARKRMKMYPHEFS 163
Query: 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLH 226
GG ++R+ IA+ LL P ++ DEPTT LD ++ LL ++ + T II H
Sbjct: 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 49.0 bits (117), Expect = 5e-06
Identities = 54/195 (27%), Positives = 76/195 (38%), Gaps = 20/195 (10%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKE--SCYIMQ 114
EL ++G +GSGK+ L +L G +P+ E ++ +L+D+R L S Y +
Sbjct: 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF 409
Query: 115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174
D LL L + L+ + K S D S K LS GQK
Sbjct: 410 DQLLGPEGKASPQL-IEKWLQ---RLELAHKTSLNDG-----RFSNLK------LSTGQK 454
Query: 175 KRLSIALELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQGTMIICTLHQPSASLL 233
KRL++ L LL I+ LDE D LL + QG I H
Sbjct: 455 KRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYF 512
Query: 234 NMADYLYVLTEGYCT 248
AD L + G +
Sbjct: 513 IHADRLLEMRNGQLS 527
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 48.5 bits (116), Expect = 7e-06
Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 61 ILGPSG---SGKTKLLDILAGYRRPKKTETNSGYI-----EINETRLQDHRMLRKESCYI 112
ILG SG +G+T+L+ +L G P+ SGY+ E+ QD L YI
Sbjct: 280 ILGVSGLMGAGRTELMKVLYG-ALPRT----SGYVTLDGHEVVTRSPQDG--LANGIVYI 332
Query: 113 MQDNLLQEL---LTVEE--SLTVAAHL-KLGNQYSRKAKESKVDSIADSLSIST-CKNTL 165
+D L ++V+E SLT + + G ++ V +I T
Sbjct: 333 SEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA 392
Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII-CT 224
LSGG +++++IA L++ P ++ LDEPT G+D + +L+ +G II +
Sbjct: 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452
Query: 225 LHQPSASLLNMADYLYVLTEG 245
P +L M+D + V+ EG
Sbjct: 453 SEMP--EVLGMSDRILVMHEG 471
Score = 32.3 bits (74), Expect = 0.87
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
Query: 61 ILGPSGSGKTKLLDILAG-YRRPKKTETNSGYIEI--NETRLQDHRMLRKESCYIMQDNL 117
++G +G+GK+ ++ +L G Y R ++G I E + ++ I+
Sbjct: 35 LVGENGAGKSTMMKVLTGIYTR------DAGSILYLGKEVTFNGPKSSQEAGIGIIH--- 85
Query: 118 LQELLTVEESLTVAAHLKLGNQYSR-------KAKESKVDSIADSLSISTCKNTLTKHLS 170
QEL + + LT+A ++ LG ++ K ++ D + L++ + L LS
Sbjct: 86 -QELNLIPQ-LTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELS 143
Query: 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
G+++ + IA L +I +DEPT L +L +++R++ QG I+ H
Sbjct: 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 48.7 bits (116), Expect = 8e-06
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 169 LSGGQKKRLSIALELLS---NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
LSGG+ +RL +A ELL+ P++ LDEPTTGL + L+ +L+ + HQG ++
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869
Query: 226 HQPSASLLNMADYL 239
H + ++ +ADY+
Sbjct: 870 H--NMHVVKVADYV 881
Score = 38.7 bits (90), Expect = 0.012
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 169 LSGGQKKRLSIALELL---SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
LS +K + IA L +P++ LDE T LD + L+ LR + G +I
Sbjct: 1700 LSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYID 1759
Query: 226 HQPSASLLNMADYLYVLTEGYCTYQGTV 253
H P +LL ADYL + G G +
Sbjct: 1760 HDP--ALLKQADYLIEMGPGSGKTGGKI 1785
Score = 32.9 bits (75), Expect = 0.64
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 169 LSGGQKKRLSIALEL---LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
LSGG+++R ++A L L + I LDEP+ GL + L+ +++ + QG ++
Sbjct: 477 LSGGEQERTALAKHLGAELIGITYI-LDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVE 535
Query: 226 H 226
H
Sbjct: 536 H 536
Score = 30.6 bits (69), Expect = 3.1
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 169 LSGGQKKRLSIALELLSNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
LS G+ RL +A ++ SN + I L++P +GL +A L++L++++ +I T
Sbjct: 1388 LSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIAT-- 1445
Query: 227 QPSASLLNMADYLYVLTEG 245
S SL AD+L L G
Sbjct: 1446 DRSGSLAEHADHLIHLGPG 1464
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 47.5 bits (113), Expect = 9e-06
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
LSGGQ++RL IA L P +I +DEPT+ LD ++ + +L++++ ++II T
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVT 223
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 47.0 bits (112), Expect = 9e-06
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 36/210 (17%)
Query: 37 SYSIKSKDI----LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
+Y K + L+ G E+ ILGP+G GKT + +LAG +P + +
Sbjct: 2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD 61
Query: 93 EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
++ Y Q TV + L + Y+ +++ I
Sbjct: 62 TVS---------------YKPQYIKADYEGTVRDLL----SSITKDFYTHPYFKTE---I 99
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY---LNATNLVK 209
A L I + LSGG+ +R++IA L + I LDEP+ LD L A+ +++
Sbjct: 100 AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
Query: 210 LLRDMAHQGTMIICTLHQPSASLLNMADYL 239
+ + ++ H + M DYL
Sbjct: 160 RFAENNEKTAFVV--EHD-----IIMIDYL 182
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 47.0 bits (112), Expect = 1e-05
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 23/190 (12%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKT---KLLDILAGYRRPKKTETNSGYIEINETRLQD 101
L D+S E I+G +GSGK+ +L+D L E SG I I+ L +
Sbjct: 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL--------LEAESGQIIIDGDLLTE 73
Query: 102 HRM--LRKESCYIMQ--DNLLQELLTVEESLTVAAHLKLGNQ-YSRKAKESKVDSIADSL 156
+ +R + + Q DN TVE+ VA L N+ + + +V+ + +
Sbjct: 74 ENVWDIRHKIGMVFQNPDNQFVGA-TVEDD--VA--FGLENKGIPHEEMKERVNEALELV 128
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-- 214
+ K LSGGQK+R++IA + P II LDE T+ LD L+K ++ +
Sbjct: 129 GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188
Query: 215 AHQGTMIICT 224
+Q T+I T
Sbjct: 189 DYQMTVISIT 198
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 47.0 bits (112), Expect = 1e-05
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 21/220 (9%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
K L D++ E VILG +GSGK+ + + P + + Y++ +T +
Sbjct: 21 TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV---YVDGLDTSDE 77
Query: 101 DHRM-LRKESCYIMQ--DNLLQELLT-VEESLTVAAHLKLGNQYSRKAKE--SKVDSIAD 154
++ +R ++ + Q DN Q + T VEE + LG +E +VD
Sbjct: 78 ENLWDIRNKAGMVFQNPDN--QIVATIVEEDVAFGPE-NLGIP----PEEIRERVDESLK 130
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
+ + + LSGGQK+R++IA L P I DEPT LD +V ++++
Sbjct: 131 KVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKEL 190
Query: 215 --AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+ T+I+ T + A AD + V+ G +GT
Sbjct: 191 NKKYGITIILITHYMEEAV---EADRIIVMDSGKVVMEGT 227
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 47.3 bits (112), Expect = 2e-05
Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 19/195 (9%)
Query: 55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKE--SCY 111
++ I+G +G GK+ L + G P++ E G ++R D+R L + +
Sbjct: 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR-DDYRDLFSAIFADF 425
Query: 112 IMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
+ D+L+ SL A QY ++ + IAD + I + T LS
Sbjct: 426 HLFDDLIGPDEGEHASLDNA------QQYLQRLE------IADKVKIEDGGFSTTTALST 473
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQGTMIICTLHQPSA 230
GQ+KRL++ L + I+ DE D +LL D+ QG II H
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD-- 531
Query: 231 SLLNMADYLYVLTEG 245
+AD + L G
Sbjct: 532 QYFELADQIIKLAAG 546
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 46.6 bits (111), Expect = 3e-05
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 141 SRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199
+S + DS+ + T T LSGG ++++ I LL+ P I+ LDEPT G+
Sbjct: 363 DNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGI 422
Query: 200 DYLNATNLVKLLRDMAHQGT-MIICTLHQPSASLLNMADYLYVLTEG 245
D + +L+ ++A + +II + P LL + D + V++ G
Sbjct: 423 DVGAKFEIYQLIAELAKKDKGIIIISSEMP--ELLGITDRILVMSNG 467
Score = 33.2 bits (76), Expect = 0.41
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 61 ILGPSGSGKTKLLDILAG-YRRPKKTETNSGYI-----EINETRLQDHRMLRKESCYIMQ 114
++G +G+GK+ LL L G Y + +SG I EI+ KE+
Sbjct: 29 LMGENGAGKSTLLKCLFGIY------QKDSGSILFQGKEIDFKS-------SKEALENGI 75
Query: 115 DNLLQELLTVEESLTVAAHLKLGNQYSRKA---------KESKVDSIADSLSISTCKNTL 165
+ QEL V + +V ++ LG +Y K +++K +I D L I
Sbjct: 76 SMVHQELNLVLQR-SVMDNMWLG-RYPTKGMFVDQDKMYRDTK--AIFDELDIDIDPRAK 131
Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
LS Q + + IA N I+ +DEPT+ L +L ++R + +G I+
Sbjct: 132 VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYIS 191
Query: 226 HQ 227
H+
Sbjct: 192 HK 193
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 46.0 bits (109), Expect = 5e-05
Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 37/229 (16%)
Query: 6 AELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPS 65
A D+K P + FQDI S + + + +L++++ ++ ++G S
Sbjct: 368 ASELDIKGLPNE-----FQDILES--FGVRQR--VIERYVLRNLNLEIKPGDVVAVVGQS 418
Query: 66 GSGKTKLLDILAGY---RRPKKTETNSGYIEINETRLQDHRMLRKESCY---IMQDNLLQ 119
G+GKT LL ++ G R +K +SG +E+ + + E + + ++L
Sbjct: 419 GAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS 478
Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179
+ + ++ + L + + K S+ LS GQK+R +
Sbjct: 479 KTGDLNAAVEILNRAGLSDAVLYRRKFSE--------------------LSTGQKERAKL 518
Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMIICTLH 226
A L P+++ +DE LD L A + + + ++A + T+I+ T
Sbjct: 519 AKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 44.4 bits (106), Expect = 6e-05
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
LKD+S E ++G +G+GK+ LL +LAG P +SG + +
Sbjct: 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-----DSGTVTVR------- 82
Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
+ S + LT E++ + L LG SRK + K+D I + +
Sbjct: 83 ---GRVSSLLGLGGGFNPELTGRENIYLNGRL-LG--LSRKEIDEKIDEIIEFSELGDFI 136
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
+ K S G K RL+ A+ P I+ +DE
Sbjct: 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDE 168
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 44.8 bits (106), Expect = 6e-05
Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 25/237 (10%)
Query: 41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN----SGYIEINE 96
+ + IL+D+S ++ +LG +G+GK+ LL LAG +G + +N
Sbjct: 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGGAPRGARVTGDVTLNG 70
Query: 97 TRLQ--DHRMLRKESCYIMQDNLLQELLTVEE--SLTVAAHLKLGNQYSRKAKESKVDSI 152
L D L + + Q + E L H + + + E ++
Sbjct: 71 EPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQAL 130
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALEL---------LSNPSIIFLDEPTTGLDYLN 203
A + + + +T LSGG+ R+ A L P + LDEPT LD +
Sbjct: 131 ALAGATALVGRDVTT-LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH 189
Query: 204 ATNLVKLLRDMA---HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257
L+ +R +A + G + I +H P+ + AD + +L +G G ++
Sbjct: 190 QHRLLDTVRRLARDWNLGVLAI--VHDPNLA-ARHADRIAMLADGAIVAHGAPADVL 243
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 43.3 bits (102), Expect = 8e-05
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
LSGG+ +R++IA LL N + DEP+ LD N + +R ++ +G +
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 229 SASLLNMADYLYVLTEG-------YCTYQGTVPGLVPYLSDFG 264
A L ++D ++V EG +GT G+ +L +
Sbjct: 132 LAVLDYLSDRIHVF-EGEPGVYGIASQPKGTREGINRFLRGYL 173
Score = 34.9 bits (80), Expect = 0.067
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 51 GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET 87
GV E+ I+GP+G+GKT + ILAG P
Sbjct: 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 44.3 bits (105), Expect = 9e-05
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 30/181 (16%)
Query: 61 ILGPSGSGKT----KLLDIL-AGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD 115
++G SGSGK+ L IL AG R+ +G + ++ + + ++ IMQ+
Sbjct: 34 LVGGSGSGKSLTCAAALGILPAGVRQ------TAGRVLLDGKPVAPCALRGRKIATIMQN 87
Query: 116 -----NLLQELLTVEESLTVAAH-LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH- 168
N L T+ H + + A ++ + + +++ + L +
Sbjct: 88 PRSAFNPLH---------TMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYP 138
Query: 169 --LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD-MAHQGTMIICTL 225
+SGG +R+ IAL LL I DEPTT LD + ++ LL + + ++
Sbjct: 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT 198
Query: 226 H 226
H
Sbjct: 199 H 199
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 43.8 bits (103), Expect = 1e-04
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
D + D L +S LSGGQ++RL IA + + P ++ LDEP + LD + + +
Sbjct: 137 DEVKDKLKVSGLS------LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE 190
Query: 210 LLRDMAHQGTMIICT 224
L+ ++ T+ + T
Sbjct: 191 LMVELKKDYTIALVT 205
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 43.6 bits (103), Expect = 1e-04
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 22/164 (13%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
S S + +L D+S ++ +LGP+G+GK+ L+ ++ G P + G I+
Sbjct: 11 SVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-----DEGVIK--- 62
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
++ + LR Y+ Q L L LTV L+L K+ + +
Sbjct: 63 ---RNGK-LRIG--YVPQKLYLDTTL----PLTVNRFLRL----RPGTKKEDILPALKRV 108
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+ + LSGG+ +R+ +A LL+ P ++ LDEPT G+D
Sbjct: 109 QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 43.6 bits (103), Expect = 1e-04
Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 66/219 (30%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEI 94
K L D+ K ++ +GPSG GK+ L D + G R +G I +
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV-------TGKITL 83
Query: 95 NETRLQDHRM----LRKESCYIMQ----------DNL---------------LQELLTVE 125
+ + D R+ LR + Q +N+ L E+ VE
Sbjct: 84 DGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEI--VE 141
Query: 126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS 185
SL RKA + + D L LSGGQ++RL IA +
Sbjct: 142 TSL-------------RKA--GLWEEVKDRLHEPGTG------LSGGQQQRLCIARAIAV 180
Query: 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
+P +I +DEP + LD + + +L+ ++ T++I T
Sbjct: 181 SPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVT 219
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 42.9 bits (101), Expect = 2e-04
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
++I+ K++ D+S F+ ++ I G +G GK+ LL ++AG +P +SG I
Sbjct: 8 QFNIEQKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-----SSGNIYYKN 61
Query: 97 TRLQDHRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
+ + + K C + NL L+ +TV E+L + + + +++ +
Sbjct: 62 CNINN---IAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----------NSAETLYAA 107
Query: 156 LSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
+ + L + LS G +K ++IA + + LDE T L N L L+
Sbjct: 108 IHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIV 167
Query: 213 DMAHQGTMIICTLHQPS 229
A+ G +++ + H S
Sbjct: 168 MKANSGGIVLLSSHLES 184
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 44.5 bits (105), Expect = 2e-04
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 38/240 (15%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET-NSGYIEIN 95
++S+ +LK+IS +L + G +GSGK+ LL ++ G P + + +SG I +
Sbjct: 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFS 492
Query: 96 ETRLQDHRMLRKESCYIM----QDNLLQELLTVE---ESLTVAAHLKLGNQYSRKAKESK 148
++ +IM +DN++ L E S+ A L E
Sbjct: 493 -----------PQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQL-----------EED 530
Query: 149 VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
+ + + +T LSGGQ+ R+S+A + + + LD P T LD + +
Sbjct: 531 IALFPEKDKTVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF 588
Query: 209 K--LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQ 266
+ L + M+++ T I+ T L AD + +L EG C + GT L DF
Sbjct: 589 ESCLCKLMSNK-TRILVT---SKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSL 644
Score = 35.3 bits (81), Expect = 0.12
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
LS G K+ + +A +LS I+ LDEP+ LD + + K L+ T+I+
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 44.2 bits (105), Expect = 2e-04
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 4/58 (6%)
Query: 169 LSGGQKKRLSIALELL---SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMII 222
LSGG+ +R+ +A EL + ++ LDEPTTGL + + L+++L+ + +G T+++
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVV 887
Score = 32.7 bits (75), Expect = 0.64
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLL-DIL--AGYRRPKKTETNSG-YIEI 94
LK+I+ + I G SGSGK+ L+ D L A R +T G Y I
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALANRLNGAKTVPGRYTSI 676
Score = 31.1 bits (71), Expect = 2.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKL-LDIL--AGYRR 81
LK+I +L VI G SGSGK+ L D + G RR
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSLAFDTIYAEGQRR 50
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 43.6 bits (103), Expect = 2e-04
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 61 ILGPSGSGKT-KLLDILAGYRRPKKTETNSGYIEINETRLQD------HRMLRKESCYIM 113
I+G SGSGK+ L I+ P + +E N LQ ++ E I
Sbjct: 38 IVGESGSGKSVSSLAIMGLIDYPGRVMAEK--LEFNGQDLQRISEKERRNLVGAEVAMIF 95
Query: 114 QDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT---KH 168
QD + L TV + A +K+ ++K + + + + + I + L
Sbjct: 96 QDPMTSLNPCYTVGFQIMEA--IKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQ 153
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220
LSGG +R+ IA+ + P ++ DEPTT LD +++LL ++ + M
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENM 205
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 43.3 bits (102), Expect = 2e-04
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 38/229 (16%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET-NSGYIEINETRLQDHR 103
+LK+I+ E+ I G +GSGKT LL ++ G P + + +SG I +
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSS------- 104
Query: 104 MLRKESCYIM----QDNLLQELLTVE---ESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
+ +IM ++N++ + E +S+ A L E + +
Sbjct: 105 ----QFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL-----------EEDITKFPEKD 149
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDM 214
+ + +T LSGGQ+ R+S+A + + + LD P LD + + + + M
Sbjct: 150 NTVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM 207
Query: 215 AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
A++ T I+ T L AD + +L EG + GT L DF
Sbjct: 208 ANK-TRILVT---SKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDF 252
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 42.9 bits (101), Expect = 2e-04
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--D 101
+ +K +S + I+G +GSGK+ L +LAG P SG + I++ L D
Sbjct: 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----TSGELLIDDHPLHFGD 81
Query: 102 HRMLRKESCYIMQD--NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
+ + I QD L + + L L+L + +E ++ + +
Sbjct: 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLL 139
Query: 160 TCKNTLTKH-LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+ H L+ GQK+RL +A L+ P +I DE LD + L+ L+
Sbjct: 140 PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM 192
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 42.5 bits (101), Expect = 5e-04
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
++K I E V++GPSG GK+ LL ++AG R SG I I + + +
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVNE--L 71
Query: 105 LRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-ESKVDSIADSLSISTC 161
+ M Q+ L ++V E++ A LK + KA+ E +V A L +
Sbjct: 72 EPADRDIAMVFQNYALYPHMSVRENM--AYGLK--IRGMPKAEIEERVAEAARILELEPL 127
Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+ + LSGGQ++R+++ ++ P++ DEP + LD
Sbjct: 128 LDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 42.7 bits (101), Expect = 5e-04
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL---QDHRMLRKESCYIMQDN 116
+G +GSGK+ L LAG E S + I TRL Q +++ E Q N
Sbjct: 33 AFVGANGSGKSALARALAGELPLLSGERQSQFSHI--TRLSFEQLQKLVSDE----WQRN 86
Query: 117 LLQELLTVEES---LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173
++L+ E T A ++ + ++ + +A I+ + K+LS G+
Sbjct: 87 N-TDMLSPGEDDTGRTTAEIIQDEVK-----DPARCEQLAQQFGITALLDRRFKYLSTGE 140
Query: 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
++ + L+S P ++ LDEP GLD + L +LL + G
Sbjct: 141 TRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185
Score = 37.7 bits (88), Expect = 0.016
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
LS GQ++ I L+ +P+++ LDEP GLD LN
Sbjct: 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLN 436
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 42.2 bits (100), Expect = 7e-04
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 45/170 (26%)
Query: 61 ILGPSGSGKTKLLDILAG----------YRR----------PKKTETNS-------GYIE 93
++G +G+GK+ L+ IL G Y + P + + G E
Sbjct: 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93
Query: 94 INETRLQDHRMLRKESCYIMQD---NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVD 150
E + H + + D L EL ++E L +L E++++
Sbjct: 94 QAEYLKRYHDISHL----VETDPSEKNLNELAKLQEQLDHHNLWQL---------ENRIN 140
Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+ L + + LSGG ++ ++ L+SNP ++ LDEPT LD
Sbjct: 141 EVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 40.7 bits (96), Expect = 0.002
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 164 TLTKHLSGGQKKRLSIALELLSNPS-IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
T K LSGG++ RL +A L PS ++ LDEPT LD L +LL +QGT+++
Sbjct: 436 TPVKALSGGERNRLLLA-RLFLKPSNLLILDEPTNDLDVETLELLEELLDS--YQGTVLL 492
Score = 31.1 bits (71), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
+Y I K ++KD S + ++GP+G GKT LL ++ G
Sbjct: 326 NYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 41.5 bits (98), Expect = 8e-04
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
SGGQ++R++IA L+ +P ++ DEP + LD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 40.5 bits (95), Expect = 0.001
Identities = 66/246 (26%), Positives = 105/246 (42%), Gaps = 33/246 (13%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
S++ K IL+ ++ E+ I+GP+GSGK+ L LAG + E G +E +
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR---EDYEVTGGTVEF---K 63
Query: 99 LQDHRMLRKE----SCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
+D L E M E+ V + L Y + + D D
Sbjct: 64 GKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFD-FQD 122
Query: 155 SLS-----ISTCKNTLTKHL----SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA- 204
+ + ++ LT+ + SGG+KKR I + P + LDE +GLD ++A
Sbjct: 123 LMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDAL 181
Query: 205 ---TNLVKLLRDMAHQGTMIICTLHQPSASLLNM--ADYLYVLTEGYCTYQGTVPGLVPY 259
+ V LRD + + II T +Q +L+ DY++VL +G G LV
Sbjct: 182 KIVADGVNSLRD--GKRSFIIVTHYQ---RILDYIKPDYVHVLYQGRIVKSGDF-TLVKQ 235
Query: 260 LSDFGY 265
L + GY
Sbjct: 236 LEEQGY 241
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 41.4 bits (97), Expect = 0.001
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG--TMIICTLH 226
LSGGQK R++ A P I+ LDEP+ LD L++ L + QG M+ H
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL--VLFQGGVLMVSHDEH 685
Query: 227 QPSASLLNMADYLYVLTEGYCT-YQGT 252
S S+ D L+V++EG T + GT
Sbjct: 686 LISGSV----DELWVVSEGKVTPFHGT 708
Score = 40.6 bits (95), Expect = 0.003
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 144 AKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
E++ SI LS + + TK SGG + R+++A L P ++ LDEPT LD
Sbjct: 319 TAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 40.9 bits (96), Expect = 0.002
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 30/145 (20%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-TRLQDHRMLRKESCYIMQDNLLQ 119
+LG +G+GK+ L+ +LAG P SG I + + +L Y Q L
Sbjct: 343 LLGRNGAGKSTLIKLLAGELAPV-----SGEIGLAKGIKLG----------YFAQHQL-- 385
Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS---ISTCKNT-LTKHLSGGQKK 175
E L +ES HL +R A + + D L K T T+ SGG+K
Sbjct: 386 EFLRADES--PLQHL------ARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKA 437
Query: 176 RLSIALELLSNPSIIFLDEPTTGLD 200
RL +AL + P+++ LDEPT LD
Sbjct: 438 RLVLALIVWQRPNLLLLDEPTNHLD 462
Score = 35.9 bits (83), Expect = 0.075
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
SGG + RL++A L+ ++ LDEPT LD L K L+ ++QGT+I+
Sbjct: 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLK--SYQGTLIL 201
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 41.0 bits (97), Expect = 0.002
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 169 LSGGQKKRLSIALELL---SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMII 222
LSGG+ +R+ +A EL + ++ LDEPTTGL + + L+++L + +G T+I+
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIV 880
Score = 30.2 bits (69), Expect = 3.9
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKL-LDIL--AGYRR 81
LK+I +L VI G SGSGK+ L D + G RR
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSLAFDTIYAEGQRR 54
Score = 29.9 bits (68), Expect = 5.7
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 169 LSGGQKKRLSIALELLSNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
LSGG+ +R+ +A ++ S + + LDEP+ GL + L++ L+ + G +I H
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541
Query: 227 QPSASLLNMADYL 239
AD++
Sbjct: 542 DEDTIRA--ADHI 552
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 40.1 bits (94), Expect = 0.003
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGTMIICT--L 225
+SGGQK+R+S+A + SN + D+P + LD + K ++D T ++ T L
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800
Query: 226 HQPSASLLNMADYLYVLTEGYCTYQGT 252
H L+ D + ++ EG +GT
Sbjct: 801 H-----FLSQVDRIILVHEGMIKEEGT 822
Score = 30.1 bits (68), Expect = 4.2
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
S GQ++ LS+A LL I+ LDE T +D + K +R+ TM+I
Sbjct: 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1428
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 40.1 bits (94), Expect = 0.004
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 169 LSGGQKKRLSIAL-----ELLSNPSII---FLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220
LSGG++ S+AL +LL + + FLDEP LD L ++L ++ G
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQ 875
Query: 221 IICTLHQPSASLLNMADYLYVLT 243
II H L AD +
Sbjct: 876 IIIISHVE--ELKERADVRIRVK 896
Score = 30.1 bits (68), Expect = 4.3
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 48 DISGVFVSKELSVILGPSGSGKTKLLD 74
DI +F + +I+GP+G+GK+ +LD
Sbjct: 18 DIEKLF-DSGIFLIVGPNGAGKSSILD 43
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 39.2 bits (92), Expect = 0.004
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY 79
S+ +ILK ++ E+ I+GP+GSGK+ L ++AG+
Sbjct: 16 SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56
Score = 36.9 bits (86), Expect = 0.022
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 21/108 (19%)
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH--------QGTMI 221
SGG+KKR I L + + LDE +GLD + L+ +A + ++I
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLD-------IDALKIIAEGINKLMTSENSII 205
Query: 222 ICTLHQPSASLLN--MADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQC 267
+ T +Q LL+ DY++V+ G G L L GY
Sbjct: 206 LITHYQ---RLLDYIKPDYVHVMQNGKIIKTGDAE-LAKELEKKGYDW 249
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 39.2 bits (92), Expect = 0.004
Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 7/168 (4%)
Query: 388 NNLSLLFFSTMFLMFTALSSMIITYPLEFEITRRE---HFNRWFSLKAYYLATMVADIPV 444
+ + + + + ++II + E R S Y L ++ D+ V
Sbjct: 91 SGYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLV 150
Query: 445 QLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILD-VKNGVIFG 503
L+ +I + + + + LL+ + L +G L+G + + ++
Sbjct: 151 GLIQLLII---LLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVI 207
Query: 504 PLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYD 551
+ +L + F G + P +++F + ++G+L +YG
Sbjct: 208 SILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYGDL 255
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 39.5 bits (93), Expect = 0.005
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM--AHQGTMII 222
G K R+ +A L SNP I+ LDEPT LD N ++ L D+ TMII
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLD----INTIRWLEDVLNERNSTMII 207
Score = 33.3 bits (77), Expect = 0.36
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
K LSGG+K R+ ++ P+++ +DEPT +D
Sbjct: 437 KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 38.7 bits (91), Expect = 0.005
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 169 LSGGQKKRLSIALELLSNPS----IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
LSGG+ +R+ +A EL S S + LDEPTTGL + + L+++L+ + +G ++
Sbjct: 170 LSGGEAQRIKLAKEL-SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVI 228
Query: 225 LHQPSASLLNMADYL 239
H ++ AD++
Sbjct: 229 EHN--LDVIKCADWI 241
Score = 28.7 bits (65), Expect = 7.8
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 13/53 (24%)
Query: 46 LKDIS-----GVFVSKELSVILGPSGSGKTKLL-DIL--AGYRRPKKTETNSG 90
LK+I GV + G SGSGK+ L+ D L A RR + G
Sbjct: 11 LKNIDVDIPLGVLT-----CVTGVSGSGKSSLINDTLYPALARRLHLKKEQPG 58
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 39.5 bits (92), Expect = 0.006
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL---RDMAHQGTMIICT 224
+LSGGQK+R+S+A + SN I D+P + +D ++ + + + T I+ T
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVT 819
Query: 225 LHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257
H S L D + V++ G + G+ L+
Sbjct: 820 -H--GISYLPQVDVIIVMSGGKISEMGSYQELL 849
Score = 30.3 bits (68), Expect = 3.7
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 22/174 (12%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+L+ I+ E I+G +G+GK+ L L + E + I + L D
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHD--- 1357
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRK----AKE-----SKVDSIADS 155
LR + I QD +L S ++ +L +QYS + A E + V ++ D
Sbjct: 1358 LRFKITIIPQDPVLF-------SGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDK 1410
Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
L + ++LS GQ++ + +A LL I+ LDE T +D L NL++
Sbjct: 1411 LDHECAEGG--ENLSVGQRQLVCLARALLRKTKILVLDEATAAVD-LETDNLIQ 1461
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 37.8 bits (89), Expect = 0.006
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 169 LSGGQKKRLSIAL---ELLSNPS-IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
LSGG+K ++AL PS LDE LD N +LL++ + + I+ T
Sbjct: 114 LSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVIT 173
Query: 225 LHQPSASLLNMADYLY 240
+ + AD LY
Sbjct: 174 HRKGTME---AADRLY 186
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 39.3 bits (92), Expect = 0.007
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 162 KNTLTKH-LSGGQKKRLSIALE---LLSNPS-IIFLDEPTTGLDYLNATNLVKLLRDMAH 216
K LSGG+K ++AL P+ LDE LD N LL++ +
Sbjct: 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK 1141
Query: 217 QGTMIICTLHQPSASLLNMADYLY 240
I+ T H + +AD LY
Sbjct: 1142 NTQFIVIT-HNKGT--MEVADQLY 1162
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 38.1 bits (89), Expect = 0.010
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
SGGQ +R+ IA L+ P +I DEP + LD +V LL+ +
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 34.9 bits (81), Expect = 0.011
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 12/60 (20%)
Query: 166 TKHLSGGQKKRL-SIAL-----ELLSN------PSIIFLDEPTTGLDYLNATNLVKLLRD 213
+ LSGG+K+ L +AL + P +IFLDE LD N +L++LLR+
Sbjct: 20 SGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 37.4 bits (87), Expect = 0.012
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
L+I + I LDEP L L+ +LRD+A G II H P
Sbjct: 137 LAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSP 188
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 37.6 bits (88), Expect = 0.014
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 158 ISTCK----NTLTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTGLDYLNATNLVK 209
ST L K SGG+ RL +AL+ + + DE TG+ A + K
Sbjct: 156 FSTNPGEPLKPLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGK 215
Query: 210 LLRDMAHQGTMIICTLHQP 228
L++++ + ++C H P
Sbjct: 216 KLKELS-RSHQVLCITHLP 233
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 38.2 bits (89), Expect = 0.015
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 169 LSGGQKKRLSIALELLS----NPS-IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
LSGG+K ++AL L + P+ LDE LD N + +L+++M+ + T I
Sbjct: 1067 LSGGEKSLTALAL-LFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIV 1124
Query: 224 TLHQPSASLLNMADYLYVLT 243
H+ AD L +T
Sbjct: 1125 ITHRKGTME--AADRLVGVT 1142
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 37.5 bits (87), Expect = 0.015
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMIICTLHQ 227
L+ G+ +++ IA+ L + P ++ DEPT ++ + +LL + + T I+ H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 228 PSASLLNMADYLYVLTEGYC 247
+ AD + VL YC
Sbjct: 219 LQ-MISQWADKINVL---YC 234
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 36.2 bits (83), Expect = 0.017
Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 60/178 (33%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120
I+GP GSGKT L LA P G I I+ + + + + +
Sbjct: 7 IVGPPGSGKTTLARALARELGPP----GGGVIYIDGEDILEEVLDQLLLIIVGGKKA--- 59
Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180
SG + RL++A
Sbjct: 60 -----------------------------------------------SGSGELRLRLALA 72
Query: 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA------HQGTMIICTLHQPSASL 232
L P ++ LDE T+ LD L+ L + +I T +
Sbjct: 73 LARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 36.5 bits (85), Expect = 0.018
Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 56/198 (28%)
Query: 52 VFVSKELSVILGPSGSGKTKLLD----ILAGYRRPKKTETNSGYIEINETRLQDHRMLRK 107
V S + I+GP+GSGK+ ++D +L G + K S
Sbjct: 18 VGGSNSFNAIVGPNGSGKSNIVDAICFVLGG--KAAKLRRGSLLFLAGG---GVKAG--- 69
Query: 108 ESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
S +V + KV+ I
Sbjct: 70 -----------------INSASVEITFDKSYFL---VLQGKVEQI--------------- 94
Query: 168 HLSGGQKKRLSIALELLS----NPS-IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
LSGG+K ++AL + + PS LDE LD N + ++++MA + I
Sbjct: 95 -LSGGEKSLSALAL-IFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFI 152
Query: 223 CTLHQPSASLLNMADYLY 240
+ + AD L
Sbjct: 153 VITLKK--EMFENADKLI 168
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 36.9 bits (86), Expect = 0.019
Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 56/224 (25%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKL-LDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
LK++ +L VI G SGSGK+ L D + + + E+ S Y R +M
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYA-----RQFLGQM 65
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA----------- 153
+ + I + L S +A K ++ R S V ++
Sbjct: 66 DKPDVDSI--EGL---------SPAIAIDQKTTSRNPR----STVGTVTEIYDYLRLLFA 110
Query: 154 ----------------DSLSISTCKNTLTKHLSGGQKKRLSIALELLSN-PSIIF-LDEP 195
L++S TL SGG+ +R+ +A ++ S +++ LDEP
Sbjct: 111 RVGIRERLGFLVDVGLGYLTLSRSAPTL----SGGEAQRIRLATQIGSGLTGVLYVLDEP 166
Query: 196 TTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL 239
+ GL + L++ L+ + G ++ H AD++
Sbjct: 167 SIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRA--ADHV 208
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 37.6 bits (87), Expect = 0.022
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 169 LSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL----LRDMAHQG 218
LSGG+K R+++A L ++ S++ +DEPT LD TNL + L+D +
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861
Query: 219 TMIICTLHQPSASLLNMA 236
+I+ + H+ S+ ++A
Sbjct: 862 QVIMISHHRELLSVADVA 879
>gnl|CDD|129791 TIGR00708, cobA, cob(I)alamin adenosyltransferase. Alternate name:
corrinoid adenosyltransferase [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 173
Score = 35.5 bits (82), Expect = 0.037
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 180 ALELLSNPS--IIFLDEPT--TGLDYLNATNLVKLLRDMAHQGTMII----CTLHQPSAS 231
A E+L++P ++ LDE T YL+ +V+ L++ +II C Q
Sbjct: 89 AKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC--PQD--- 143
Query: 232 LLNMADYLYVLTE 244
LL +AD + +
Sbjct: 144 LLELADLVTEMRP 156
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 36.9 bits (85), Expect = 0.038
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 39/222 (17%)
Query: 42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD 101
SK L DI+ L I+G +G GKT L+ + G +T +
Sbjct: 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS-------------- 674
Query: 102 HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY--SRKAKESKVDSIADSLSIS 159
++R Y+ Q + + + TV ++ G+ + R + V ++ L +
Sbjct: 675 -VVIRGSVAYVPQVSWIF-------NATVRENILFGSDFESERYWRAIDVTALQHDLDLL 726
Query: 160 TCKNTLTK------HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLR 212
++ LT+ ++SGGQK+R+S+A + SN I D+P + LD A + ++
Sbjct: 727 PGRD-LTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK 785
Query: 213 DMAHQGTMIICT--LHQPSASLLNMADYLYVLTEGYCTYQGT 252
D T ++ T LH L + D + +++EG +GT
Sbjct: 786 DELKGKTRVLVTNQLH-----FLPLMDRIILVSEGMIKEEGT 822
Score = 34.6 bits (79), Expect = 0.19
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
++ S GQ++ LS+A LL I+ LDE T +D + + + +R+ TM++
Sbjct: 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLV 1425
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 36.5 bits (85), Expect = 0.038
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 26/145 (17%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
EL ++G +GSGK+ L +L G +P+ E + + +D+R L S +
Sbjct: 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF--SAVFTDFH 407
Query: 117 LLQELLTVE----ESLTVA---AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL 169
L +LL E V LK+ ++ L + + + K L
Sbjct: 408 LFDQLLGPEGKPANPALVEKWLERLKMAHK----------------LELEDGRISNLK-L 450
Query: 170 SGGQKKRLSIALELLSNPSIIFLDE 194
S GQKKRL++ L L I+ LDE
Sbjct: 451 SKGQKKRLALLLALAEERDILLLDE 475
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 36.0 bits (83), Expect = 0.042
Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 30/202 (14%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
T Y+ +L++IS + +LG +GSGK+ LL + + R TE G I+I
Sbjct: 9 TAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLL---SAFLRLLNTE---GDIQI 62
Query: 95 -----NETRLQDHRM---LRKESCYIMQDNLLQEL-----LTVEESLTVAAHLKLGNQYS 141
N LQ R + + +I + L + EE VA + L
Sbjct: 63 DGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGL----- 117
Query: 142 RKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201
+S ++ L LS G K+ + +A +LS I+ LDEP+ LD
Sbjct: 118 ----KSVIEQFPGQLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 171
Query: 202 LNATNLVKLLRDMAHQGTMIIC 223
+ + K L+ T+I+
Sbjct: 172 ITYQVIRKTLKQAFADCTVILS 193
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 35.5 bits (82), Expect = 0.077
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 166 TKHLSGGQKKRLSIALELLS--NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
+ LS G + L++A LLS P ++ LDEP T L L +L+R A + +I+
Sbjct: 268 DRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVS 327
Query: 224 TLHQPSASLLN 234
T H S LLN
Sbjct: 328 T-H--SPRLLN 335
>gnl|CDD|129389 TIGR00288, TIGR00288, TIGR00288 family protein. This family of
orthologs is restricted to but universal among the
completed archaeal genomes so far. Eubacterial proteins
showing at least local homology include slr1870 from
Synechocystis PCC6803 and two proteins from Aquifex
aeolicusr, none of which is characterized [Hypothetical
proteins, Conserved].
Length = 160
Score = 34.0 bits (78), Expect = 0.086
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 36/176 (20%)
Query: 83 KKTETNSGYIEINETRLQDHR---------MLRKESCYIMQDNLLQELLTVEESLTVAAH 133
K ++ YI I + R + + MLRKE +L + E L+
Sbjct: 4 SKLQSLKEYISIKKKRKGEKKIGLLVDGPNMLRKEFNI--------DLDEIREILSEYGD 55
Query: 134 LKLG----NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI-ALELLSNPS 188
+K+G NQY A + ++++ + + ++G R+++ A+EL+ NP+
Sbjct: 56 IKIGKVLLNQY---ASDKLIEAVVN-------QGFEPIIVAGDVDVRMAVEAMELIYNPN 105
Query: 189 IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244
I + T D+L N K + + T++I S +L N AD +L E
Sbjct: 106 IDAVALVTRDADFLPVINKAK---ENGKE-TIVIGAEPGFSTALQNSADIAIILGE 157
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 34.2 bits (79), Expect = 0.16
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 155 SLSISTCKNTLT-KHLSGGQKKRLSIALEL---LSNPSIIFL-DEPTTGLDYLNATNLVK 209
SL+ + LSGGQK +++AL +P+ +L DE LD T +
Sbjct: 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVAN 203
Query: 210 LLRDMAHQGTMIICTLHQPSASLLNMADYLY 240
++++++ G I T +P LL +AD Y
Sbjct: 204 MIKELSD-GAQFITTTFRP--ELLEVADKFY 231
>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
Members of this protein were designated YjeQ and are now
designated RsgA (ribosome small subunit-dependent GTPase
A). The strongest motif in the alignment of these
proteins is GXSGVGKS[ST], a classic P-loop for
nucleotide binding. This protein has been shown to
cleave GTP and remain bound to GDP. A role as a
regulator of translation has been suggested. The Aquifex
aeolicus ortholog is split into consecutive open reading
frames. Consequently, this model was build in fragment
mode (-f option) [Protein synthesis, Translation
factors].
Length = 245
Score = 33.5 bits (77), Expect = 0.20
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL--------- 73
Q Y + Y S K++D LK++ ++ +SV G SG GK+ L+
Sbjct: 88 EQLDIYRNIGYQVLMTSSKNQDGLKELIEALQNR-ISVFAGQSGVGKSSLINALDPSVKQ 146
Query: 74 ---DILAGYRRPKKTETNS 89
DI + K T T+
Sbjct: 147 QVNDISSKLGLGKHTTTHV 165
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 33.6 bits (77), Expect = 0.34
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 165 LTKHLSGGQKKRLSIALELL-----SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT 219
L K SGG+ R+ +AL+++ + ++IF DE G+ A + K L ++ +
Sbjct: 437 LAKVASGGELSRVMLALKVVLSSSAAVTTLIF-DEVDVGVSGETAQAIAKKLAQLS-ERH 494
Query: 220 MIICTLHQP 228
++C H P
Sbjct: 495 QVLCVTHLP 503
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 33.6 bits (77), Expect = 0.39
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 53 FVSKELSVILGPSGSGKTKLLD--ILAGYRR 81
F S L I GP+G+GKT LLD LA Y
Sbjct: 27 FASNGLFAITGPTGAGKTTLLDAICLALYHE 57
>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal.
Miro2 subfamily. Miro (mitochondrial Rho) proteins have
tandem GTP-binding domains separated by a linker region
containing putative calcium-binding EF hand motifs.
Genes encoding Miro-like proteins were found in several
eukaryotic organisms. This CD represents the putative
GTPase domain in the C terminus of Miro proteins. These
atypical Rho GTPases have roles in mitochondrial
homeostasis and apoptosis. Most Rho proteins contain a
lipid modification site at the C-terminus; however, Miro
is one of few Rho subfamilies that lack this feature.
Length = 180
Score = 32.2 bits (74), Expect = 0.40
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 13/77 (16%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSG----YIEINETRLQDHRMLRKESCY-IMQD 115
+LG GSGK+ LL G R S +N + + Y I+++
Sbjct: 9 VLGAKGSGKSALLQAFLG--RSFSQNAYSPTIKPRYAVNTVEVPG------QEKYLILRE 60
Query: 116 NLLQELLTVEESLTVAA 132
E + +AA
Sbjct: 61 VGEDEEAILLNDAELAA 77
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 33.0 bits (76), Expect = 0.41
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 28 YSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
Y + Y S K+ D L++++ + + +++V+LG SG GK+ L++ L
Sbjct: 137 YEDIGYPVLFVSAKNGDGLEELAELL-AGKITVLLGQSGVGKSTLINALLP 186
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 32.4 bits (75), Expect = 0.51
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 28 YSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
Y L Y + S K+ + L ++ + + SV++G SG GK+ LL+ L
Sbjct: 58 YEKLGYPVLAVSAKTGEGLDELRELL-KGKTSVLVGQSGVGKSTLLNALLP 107
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a
wide variety of presumed DNA repair proteins.
Length = 154
Score = 31.5 bits (72), Expect = 0.54
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 49 ISGVFVSKELSVILGPSGSGKTKL-LDILA 77
+ G+ L+++ G G+GK+ L LD+ A
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLALDLAA 55
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 33.1 bits (75), Expect = 0.56
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 170 SGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
S GQK RL++A N II LDEPTT LD N +L L ++
Sbjct: 1201 SAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEI 1251
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 31.8 bits (73), Expect = 0.56
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 28 YSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
Y A+ Y+ S K+ + ++++ + K SV+ G SG GK+ LL+ L
Sbjct: 8 YEAIGYEVLVVSAKTGEGIEELKPLLKGK-TSVLAGQSGVGKSTLLNALLP 57
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 32.5 bits (74), Expect = 0.71
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-L 210
I D SI +T + H+ K +S L + S++ DE G D + L +
Sbjct: 373 IGDEQSIEQNLSTFSGHM-----KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISI 427
Query: 211 LRDMAHQGTMIICTLHQPSASLL 233
L + Q ++ T H L
Sbjct: 428 LEYLLKQNAQVLITTHYKELKAL 450
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 32.7 bits (76), Expect = 0.72
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 169 LSGGQKKRLSIALELLSNP---SIIFLDEPTTGL 199
LSGG+ +R+ +A EL ++ LDEPTTGL
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864
Score = 29.3 bits (67), Expect = 8.5
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 46 LKDIS-----GVFVSKELSVILGPSGSGK-TKLLDIL 76
LK++ G F + G SGSGK T + + L
Sbjct: 625 LKNVDVEIPLGKFT-----CVTGVSGSGKSTLINETL 656
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 32.0 bits (74), Expect = 0.84
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 8/38 (21%)
Query: 59 SVIL-GPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95
S+IL GP G+GKT L I+AG T++ + ++
Sbjct: 38 SMILWGPPGTGKTTLARIIAG-------ATDAPFEALS 68
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 31.3 bits (71), Expect = 0.86
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120
+ GP+GSGKT L LA Y++I E + L ES DNL+
Sbjct: 4 VFGPTGSGKTTLALQLA--LNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIV 61
Query: 121 LLTVEE 126
T ++
Sbjct: 62 FATADD 67
>gnl|CDD|221436 pfam12138, Spherulin4, Spherulation-specific family 4. This
protein is found in bacteria, archaea and eukaryotes.
Proteins in this family are typically between 250 and
398 amino acids in length. There is a conserved NPG
sequence motif and there are two completely conserved G
residues that may be functionally important. Starvation
will often induce spherulation - the production of
spores - and this process may involve DNA-methylation.
Changes in the methylation of spherulin4 are associated
with the formation of spherules, but these changes are
probably transient. Methylation of the gene accompanies
its transcriptional activation, and spherulin4 mRNA is
only detectable in late spherulating cultures and mature
spherules. It is a spherulation-specific protein.
Length = 243
Score = 31.5 bits (72), Expect = 0.87
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 16/73 (21%)
Query: 190 IFLDEPTTG-----LDYL-NATNLVKLLRDMAH----QGTMIICTLHQPSASLLNMADYL 239
IFLDE + L+Y N T+ +K L GT + P A ++AD L
Sbjct: 107 IFLDETPSDYNASYLEYYRNITSYIKGLGGDGLVVLNPGTQV------PDAGYASLADIL 160
Query: 240 YVLTEGYCTYQGT 252
V Y TY +
Sbjct: 161 VVFEGSYATYASS 173
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 32.2 bits (74), Expect = 0.88
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 165 LTKHLSGGQKKRLSIALE-LLSN----PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT 219
L K SGG+ R+ +AL+ +LS P++IF DE TG+ A + K LR ++ +
Sbjct: 428 LAKVASGGELSRIMLALKVILSRKDDTPTLIF-DEVDTGISGRVAQAVGKKLRRLS-EHH 485
Query: 220 MIICTLHQP 228
++C H P
Sbjct: 486 QVLCVTHLP 494
>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
Length = 431
Score = 32.2 bits (73), Expect = 0.91
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL-----NMADYLYVLTEGYCTY 249
PT A ++++ +A +GT + H P + ++ NM D V+ +G T
Sbjct: 163 PTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLGVNMND-SRVIKDGLATV 221
Query: 250 QGTVPGLVPYLSDF 263
QG +VP L +
Sbjct: 222 QGESSQIVPLLMEL 235
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 32.2 bits (73), Expect = 1.00
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 169 LSGGQKKRLSIALELLS----NPSIIF-LDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
LSGG+K +++AL + + P+ + LDE LD N + + L++++ I+
Sbjct: 1079 LSGGEKTLVALAL-IFAIQKYRPAPFYLLDEIDAALDDQNVSRVANYLKELSKNAQFIVI 1137
Query: 224 TLHQPSASLLNMADYLY 240
+L + +L AD L
Sbjct: 1138 SLREE---MLEKADRLV 1151
Score = 30.7 bits (69), Expect = 3.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLD 74
K K + F S + I+GP+GSGK+ +LD
Sbjct: 11 KSYAKTVILPF-SPGFTAIVGPNGSGKSNILD 41
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 31.0 bits (71), Expect = 1.1
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 60 VILGPSGSGKTKLLDILA--GYR 80
VI G +GKT LL+ LA GY
Sbjct: 3 VITGGPSTGKTTLLEALAARGYP 25
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 31.5 bits (72), Expect = 1.4
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 167 KHLSGGQKKRLSIALE-----LLSN--------PSIIFLDEPTTGLDYLNATNLVKLLRD 213
+ LSGG++ +++L LL+ P +I LDEPT LD + + LV L+
Sbjct: 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLI-LDEPTVFLDSGHVSQLVDLVES 838
Query: 214 MAHQGT-MIICTLHQPSASLLNMADYL 239
M G I+ H L+ AD L
Sbjct: 839 MRRLGVEQIVVVSH--DDELVGAADDL 863
>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 30.5 bits (69), Expect = 1.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 61 ILGPSGSGKTKLLDILAG 78
I G SGSGKT L LA
Sbjct: 20 IDGRSGSGKTTLAGALAA 37
>gnl|CDD|225436 COG2881, COG2881, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 181
Score = 30.4 bits (69), Expect = 1.7
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 563 HFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLV 602
KSPA F + G + L F ++S L ++S L
Sbjct: 13 VLKSPASFYRKM-PSTGGLAEPLLFALISVALSALSSLLA 51
>gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase.
Snu114p subfamily. Snu114p is one of several proteins
that make up the U5 small nuclear ribonucleoprotein
(snRNP) particle. U5 is a component of the spliceosome,
which catalyzes the splicing of pre-mRNA to remove
introns. Snu114p is homologous to EF-2, but typically
contains an additional N-terminal domain not found in
Ef-2. This protein is part of the GTP translation factor
family and the Ras superfamily, characterized by five
G-box motifs.
Length = 213
Score = 30.7 bits (70), Expect = 1.8
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKE 108
I G GKT LLD+L + G R D R +E
Sbjct: 5 IAGHLHHGKTSLLDMLIEQTHKRTPSVKLG---WKPLRYTDTRKDEQE 49
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 30.3 bits (69), Expect = 2.0
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL-VK 209
SI SLS T + H+ K ++ L+ S++ LDE +G D + L +
Sbjct: 84 SIEQSLS------TFSSHM-----KNIARILQHADPDSLVLLDELGSGTDPVEGAALAIA 132
Query: 210 LLRDMAHQGTMIICTLH 226
+L ++ +G ++I T H
Sbjct: 133 ILEELLERGALVIATTH 149
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 31.2 bits (71), Expect = 2.1
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 169 LSGGQKK--RLSI--ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
+SGG+K LS A++ DE LD +N + KL+R+ A + I+ +
Sbjct: 1075 MSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVS 1134
Query: 225 LHQP 228
L P
Sbjct: 1135 LRSP 1138
Score = 29.7 bits (67), Expect = 6.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 55 SKELSVILGPSGSGKTKLLDIL 76
SK +VI GP+GSGK+ + D +
Sbjct: 22 SKGFTVISGPNGSGKSNIGDAI 43
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 30.7 bits (69), Expect = 2.3
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 53 FVSKELSVILGPSGSGKTKLLDIL 76
F E ++I+GP+GSGKT +LD +
Sbjct: 21 FGESETTIIVGPNGSGKTTVLDAI 44
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 27.9 bits (63), Expect = 2.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 61 ILGPSGSGKTKLLD 74
+ GPSGSGK+ L+D
Sbjct: 26 LTGPSGSGKSTLID 39
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 30.7 bits (70), Expect = 2.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 59 SVIL-GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
S+IL GP G+GKT L ++AG TN+ + ++
Sbjct: 50 SMILWGPPGTGKTTLARLIAGT-------TNAAFEALSAV 82
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 30.5 bits (69), Expect = 2.7
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
L+ G+ +++ IA+ L + P ++ DEPT ++ + +LL + I +
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 229 SASLLNMADYLYVLTEGYC 247
L AD + VL YC
Sbjct: 219 LQMLSQWADKINVL---YC 234
>gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown
domain fusion protein; Reviewed.
Length = 725
Score = 30.8 bits (70), Expect = 2.9
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 59 SVIL-GPSGSGKTKLLDILAGYRR 81
S+IL GP G GKT L I+A + R
Sbjct: 54 SLILYGPPGVGKTTLARIIANHTR 77
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 29.8 bits (68), Expect = 3.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 168 HLSGGQKKRLSIALELLS----NPSIIF-LDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
+LSGG+K ++AL L + P+ F LDE LD N + +R+ A I
Sbjct: 155 NLSGGEKTMAALAL-LFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFI 213
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 28.7 bits (65), Expect = 4.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 60 VILGPSGSGKTKLLDIL 76
V+ GPSG GK+ LL L
Sbjct: 3 VLSGPSGVGKSTLLKRL 19
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 29.9 bits (68), Expect = 4.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 62 LGPSGSGKTKLLDILA 77
LGP+G GKT+L LA
Sbjct: 527 LGPTGVGKTELAKALA 542
>gnl|CDD|217938 pfam04168, Alpha-E, A predicted alpha-helical domain with a
conserved ER motif. An uncharacterized alpha helical
domain containing a highly conserved ER motif and
typically found as a tandem duplication. Contextual
analysis suggests that it functions in a distinct
peptide synthesis/modification system comprising of a
transglutaminase, a peptidase of the NTN-hydrolase
superfamily, an active and inactive circularly permuted
ATP-grasp domains and a transglutaminase fused
N-terminal to a circularly permuted COOH-NH2 ligase
domain.
Length = 312
Score = 29.5 bits (67), Expect = 5.4
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 353 RDRFLTKVRLSLHLIIGSFLGIMYRGIG 380
FL V+ L L G G M R G
Sbjct: 131 LLEFLEWVKRRLALFRGLTHGTMLRDEG 158
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 30.0 bits (68), Expect = 5.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 60 VILGPSGSGKTKLLD 74
+++GP GSGKT LL
Sbjct: 115 LVIGPPGSGKTTLLQ 129
>gnl|CDD|212096 cd01022, GH57N_like, N-terminal catalytic domain of heat stable
retaining glycoside hydrolase family 57. Glycoside
hydrolase family 57(GH57) is a chiefly prokaryotic
family with the majority of thermostable enzymes coming
from extremophiles (many of these are archaeal
hyperthermophiles), which exhibit the enzyme
specificities of alpha-amylase (EC 3.2.1.1),
4-alpha-glucanotransferase (EC 2.4.1.25),
amylopullulanase (EC 3.2.1.1/41), and
alpha-galactosidase (EC 3.2.1.22). This family also
includes many hypothetical proteins with uncharacterized
activity and specificity. GH57s cleave alpha-glycosidic
bonds by employing a retaining mechanism, which involves
a glycosyl-enzyme intermediate, allowing
transglycosylation.
Length = 313
Score = 29.3 bits (66), Expect = 5.7
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 18/80 (22%)
Query: 205 TNLVKLLRDMAHQGTM--IICTLHQPSASLLNMADYLYV-LTEGYCTYQGTV-------- 253
N++ L+++ G + + C LL + + + G T++
Sbjct: 78 DNVLDALKELVDTGQVELLGCGYTHAYLPLLGPKEDVRAQIEAGLDTFERLFGRRPKGVW 137
Query: 254 -------PGLVPYLSDFGYQ 266
PGL L + G +
Sbjct: 138 LPECAYRPGLEKVLREAGIE 157
>gnl|CDD|198119 smart01051, CAMSAP_CKK, Microtubule-binding calmodulin-regulated
spectrin-associated. This is the C-terminal domain of
a family of eumetazoan proteins collectively defined as
calmodulin-regulated spectrin-associated, or CAMSAP,
proteins. CAMSAP proteins carry an N-terminal region
that includes the CH domain, a central region including
a predicted coiled-coil and this C-terminal, or CKK,
domain - defined as being present in CAMSAP, KIAA1078
and KIAA1543, The C-terminal domain is the part of the
CAMSAP proteins that binds to microtubules. The domain
appears to act by producing inhibition of neurite
extension, probably by blocking microtubule function.
CKK represents a domain that has evolved with the
metazoa. The structure of a murine hypothetical protein
from RIKEN cDNA has shown the domain to adopt a mainly
beta barrel structure with an associated alpha-helical
hairpin.
Length = 129
Score = 28.1 bits (63), Expect = 6.0
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 8 LQDLKKSPRKHFNLLFQD--ISYSALY 32
L++++KS HF +LF+D + ALY
Sbjct: 39 LEEMEKSEANHFLILFRDAKCQFRALY 65
>gnl|CDD|224097 COG1176, PotB, ABC-type spermidine/putrescine transport system,
permease component I [Amino acid transport and
metabolism].
Length = 287
Score = 29.1 bits (66), Expect = 6.4
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 23/144 (15%)
Query: 390 LSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAY----YLATMVADIPVQ 445
L LL + LS + L ++A +V
Sbjct: 26 LPLLIVLVPSFLLPLLSFFDYSGVFTLG-NYARLLTDSLYLTVLLRSLWIAALVT----- 79
Query: 446 LLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLT-----LYS-----QGMGVLVGMILD 495
L+C ++ YF+++ P + L+I F T Y+ G++ +
Sbjct: 80 LICLLLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRTYAWIVILGRNGLINQAL-- 137
Query: 496 VKNGVIFGPLTLLPWTIFSGYFVL 519
+ G+I PL LL +T + +
Sbjct: 138 LALGLIDEPLRLL-YTETAVIIGM 160
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 29.1 bits (66), Expect = 6.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 60 VILGPSGSGKTKLLDILA 77
++G SGSGKT L + L
Sbjct: 3 ALVGHSGSGKTTLAEALL 20
>gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional.
Length = 259
Score = 28.9 bits (65), Expect = 6.6
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 60 VILGPSGSGKTKLLDILAGYR 80
V+LGPSG GKT L I GY
Sbjct: 106 VLLGPSGVGKTHLA-IALGYE 125
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and
host eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 28.8 bits (65), Expect = 6.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 60 VILGPSGSGKTKLLDILAGY 79
+I G +GSGKT LL+ L +
Sbjct: 29 LISGGTGSGKTTLLNALLAF 48
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 28.0 bits (63), Expect = 7.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 55 SKELSVILGPSGSGKTKLLDILA 77
+ V+ G SGSGKT LL LA
Sbjct: 3 GAGIGVLTGESGSGKTTLLRRLA 25
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 29.0 bits (66), Expect = 7.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 15/58 (25%)
Query: 28 YSALYYDTHSYSIKS-------KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
Y A+ YD S K K +L +++V+ G SG GK+ LL+ LA
Sbjct: 137 YRAIGYDVLELSAKEGEGLDELKPLLAG--------KVTVLAGQSGVGKSTLLNALAP 186
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 28.7 bits (64), Expect = 7.6
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 55 SKELSVILGPSGSGKTKLLD 74
SK L++I GP+GSGKT +LD
Sbjct: 18 SKGLTLIYGPNGSGKTTILD 37
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 28.7 bits (64), Expect = 8.3
Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 36/235 (15%)
Query: 38 YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
Y K +LK + + I G +GSGK+ L LA +R + I+ +
Sbjct: 29 YENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSL--SLAFFRMVDIFDGKIVIDGIDIS 86
Query: 98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
+L H LR I+QD +L + ++ K + D + ++L
Sbjct: 87 KLPLH-TLRSRLSIILQDPIL-----------FSGSIRFNLDPECKCTD---DRLWEALE 131
Query: 158 ISTCKNTLTKHLSGG---------------QKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
I+ KN + K L GG Q++ +A + SI+ +DE T +D
Sbjct: 132 IAQLKN-MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257
L K++ M + T+ +++L+ AD + VL+ G T L+
Sbjct: 191 TENILQKVV--MTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLL 242
>gnl|CDD|237525 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 29.0 bits (65), Expect = 8.5
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 59 SVILGPSGSGKTKLLDILAG-YRR 81
++I GP+GSGK+ LL ++A +RR
Sbjct: 459 TLIFGPTGSGKSTLLALIAAQFRR 482
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 28.6 bits (64), Expect = 9.4
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Query: 39 SIKSKDILKDISGVFVSKE-LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
+K ++LKD++ ++K L +I+G +GSGK+ + + GYR + ++G+I
Sbjct: 112 ELKLPEVLKDLA---LAKRGLVIIVGATGSGKSTTMAAMIGYR----NKNSTGHI 159
>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. All proteins in this
family for which functions are known are involved in DNA
damage tolerance (likely cell cycle checkpoints).This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 637
Score = 28.8 bits (64), Expect = 9.6
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
K + +I GPSG GK+ + IL+ + E S + + L ESC+
Sbjct: 110 KRILLITGPSGCGKSTTIKILSKELGIQVQE-WSNPTLPDFQKNDHKVTLSLESCFSN 166
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only].
Length = 493
Score = 28.8 bits (65), Expect = 9.8
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 468 RFAMFLLICVFLTLYS----QGMGVLVGMI--LDVKNGVIFGPLTLLPWTIFSGYF 517
R L+I VF Y G+L+ ++ + G++ G L + +T G
Sbjct: 121 RILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLGGLR 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.409
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,796,641
Number of extensions: 3060005
Number of successful extensions: 5160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4859
Number of HSP's successfully gapped: 614
Length of query: 612
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 509
Effective length of database: 6,369,140
Effective search space: 3241892260
Effective search space used: 3241892260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (27.7 bits)