RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12625
(612 letters)
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 106 bits (267), Expect = 2e-26
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 62 LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
GP+G GKT LL ++ Y +P G I N ++ + ++ ++ ++
Sbjct: 41 HGPNGIGKTTLLKTISTYLKP-----LKGEIIYNG---VPITKVKGKIFFLPEEIIVPRK 92
Query: 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
++VE+ L A L Y K ++++ +S+ + K L LS G +R+ +A
Sbjct: 93 ISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLKKKL-GELSQGTIRRVQLAS 146
Query: 182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLY 240
LL N I LD+P +D + ++K + ++ + G +II + L+ D
Sbjct: 147 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-----ELSYCDVNE 201
Query: 241 VLTEG 245
L +
Sbjct: 202 NLHKY 206
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 107 bits (270), Expect = 2e-26
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 9/166 (5%)
Query: 62 LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC-YIMQDNLLQE 120
+GP+G+GKT L I++ +P +SG + + + + ++ Y+ ++
Sbjct: 47 IGPNGAGKTTTLRIISTLIKP-----SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 101
Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180
+ E L A S E V+ + + S G ++L IA
Sbjct: 102 NMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA 158
Query: 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
L+ NP + LDEPT+GLD LNA + K+L+ + +G I+ + H
Sbjct: 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 107 bits (269), Expect = 2e-26
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 26/216 (12%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
Y + + ++ ++ +LG +G GK+ LLD+L G RP G IE+
Sbjct: 11 GFYYQ-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI-----QGKIEV 64
Query: 95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTV----AAHLKLGNQYSRKAKESKVD 150
+ ++ Q +V + V + H+ + +
Sbjct: 65 Y-----------QSIGFVPQFFSSPFAYSVLD--IVLMGRSTHINTFAKPKSHDYQ-VAM 110
Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210
D L+++ LSGGQ++ + IA + S +I LDEPT+ LD N ++ L
Sbjct: 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSL 170
Query: 211 LRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG 245
L D+A Q ++ T HQP+ + +A+ +L +
Sbjct: 171 LIDLAQSQNMTVVFTTHQPNQVVA-IANKTLLLNKQ 205
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 104 bits (263), Expect = 1e-25
Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 36/230 (15%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
+ L +SG + E+ ++GP+G+GK+ LL +AG G I+
Sbjct: 9 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG------KGSIQFAGQP 62
Query: 99 LQDHRMLRKES----CYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
L + Y+ Q V + H K + ++ +A
Sbjct: 63 L--EAWSATKLALHRAYLSQQQTPPFATPVWH--YLTLHQ------HDKTRTELLNDVAG 112
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELL-------SNPSIIFLDEPTTGLDYLNATNL 207
+L++ T LSGG+ +R+ +A +L ++ LDEP LD + L
Sbjct: 113 ALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172
Query: 208 VKLLRDMAHQGTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGTV 253
K+L ++ QG I+ + H LN ++L G G
Sbjct: 173 DKILSALSQQGLAIVMSSHD-----LNHTLRHAHRAWLLKGGKMLASGRR 217
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 103 bits (259), Expect = 2e-23
Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 22/228 (9%)
Query: 35 THSYSIKSKDILKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
H Y + K + +LG +G GKT +L ILAG P N G
Sbjct: 6 IHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIP-----NFGDPN 57
Query: 94 INETRLQDHRMLR-KESCYIMQD---NLLQELLTVEESLTVAAHLK--LGNQYSRKAKES 147
+ + + R KE ++ N L+ + ++ + LK + ++ +
Sbjct: 58 SKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERG 117
Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
K D + + L+++ N LSGG +RL +A LL + D+P++ LD N+
Sbjct: 118 KKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNM 177
Query: 208 VKLLRDMAHQGTMIICT--LHQPSASLLNMADYLYVLTEGYCTYQGTV 253
K +R++ +I+ L L + D ++++ G + G V
Sbjct: 178 AKAIRELLKNKYVIVVDHDL----IVLDYLTDLIHII-YGESSVYGRV 220
Score = 99.3 bits (248), Expect = 4e-22
Identities = 45/241 (18%), Positives = 85/241 (35%), Gaps = 33/241 (13%)
Query: 5 EAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKD----ILKDISGVFVSKELSV 60
AE ++ K D+ S ++ K L +G E+
Sbjct: 239 PAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIG 298
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120
ILGP+G GKT IL G + G + + L + + + D +Q+
Sbjct: 299 ILGPNGIGKTTFARILVGEITA-----DEGSVTPEKQILS----YKPQRIFPNYDGTVQQ 349
Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180
L + ++ + + + L++ + LSGG+ ++L IA
Sbjct: 350 YL------------ENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIA 397
Query: 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA--HQGTMIICTLHQPSASLLNMADY 238
L + LD+P++ LD + K ++ + + I H L++ DY
Sbjct: 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID-HD-----LSIHDY 451
Query: 239 L 239
+
Sbjct: 452 I 452
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 99.2 bits (248), Expect = 3e-23
Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 19/222 (8%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL--- 99
K ILK IS + ++ G +G+GKT LL+IL Y SG + +
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-----TSGTVNLFGKMPGKV 88
Query: 100 -QDHRMLRKESCYI---MQDNLLQELLTVEESLTVAAHLKLG--NQYSRKAKESKVDSIA 153
+R+ ++ + + + V + + A +G + + + +
Sbjct: 89 GYSAETVRQHIGFVSHSLLEKFQEGE-RVIDVVISGAFKSIGVYQDIDDEIRN-EAHQLL 146
Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
+ +S +LS G+K+R+ IA L+ P ++ LDEP GLD++ +L+ +L
Sbjct: 147 KLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDS 206
Query: 214 MAHQGT--MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
++ +I H + + +L +G QG V
Sbjct: 207 LSDSYPTLAMIYVTHFIEE-ITANFSKILLLKDGQSIQQGAV 247
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 97.8 bits (244), Expect = 6e-23
Identities = 50/224 (22%), Positives = 83/224 (37%), Gaps = 25/224 (11%)
Query: 35 THSYSIKSKD--ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
+ S K + L++I+ + V+ E +ILGP+GSGKT LL ++G SG I
Sbjct: 8 GITLSGKGYERFSLENIN-LEVNGEKVIILGPNGSGKTTLLRAISGL------LPYSGNI 60
Query: 93 EINETRLQDHRMLRKESCYIMQDNLLQEL-LTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
IN + R +R Y E+ +TV + V + +L +
Sbjct: 61 FING---MEVRKIRNYIRYSTNLPEAYEIGVTVND--IVYLYEEL-----KGLDRDLFLE 110
Query: 152 IADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210
+ +L + LS GQ + +L L S P I+ LDEP +D + +
Sbjct: 111 MLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170
Query: 211 LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254
+++ I+ T +Y G
Sbjct: 171 IKEYGK--EGILVTHELDML--NLYKEYKAYFLVGNRLQGPISV 210
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 95.7 bits (239), Expect = 3e-22
Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 25/236 (10%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
++S+ ++ K+ L+++S V E ++ G +GSGK+ LL I+AG P
Sbjct: 5 VVNVSHI--FHRGTPLEKKA---LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59
Query: 83 KKTETNSGYIEIN--ETRLQDHRMLRKESCYIMQ--DNLLQELLTVEESLTVAAHLKLGN 138
SG + + + + +R+ Q ++ V + VA +K N
Sbjct: 60 T-----SGDVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAE-RVFDE--VAFAVK--N 106
Query: 139 QYSRKAKESKVDSIADS--LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
Y + V + L + K+ + LSGG+K+R++IA ++ P I+ LDEP
Sbjct: 107 FYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 197 TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
GLD T+L++++ G +I H +++N D + VL +G + GT
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGT 221
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 95.3 bits (238), Expect = 5e-22
Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 24/228 (10%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
++YS LK I+ E++ ILG +G GK+ L G +P +SG I
Sbjct: 14 NYNYS-DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-----SSGRILF 67
Query: 95 NETRLQDHR----MLRKESCYIMQ--DNLLQELLTVEESLTVAAHLK-LGNQYSRKAKES 147
+ + R LR+ + Q DN L +V + V+ +
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQD--VSFGAVNMK--LPEDEIRK 122
Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
+VD+ I K+ T LS GQKKR++IA L+ P ++ LDEPT GLD + + +
Sbjct: 123 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 208 VKLLRDMAHQG--TMIICTLHQ-PSASLLNMADYLYVLTEGYCTYQGT 252
+KLL +M + T+II T H D ++V+ EG QG
Sbjct: 183 MKLLVEMQKELGITIIIAT-HDIDIV--PLYCDNVFVMKEGRVILQGN 227
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 99.3 bits (248), Expect = 5e-22
Identities = 48/219 (21%), Positives = 78/219 (35%), Gaps = 27/219 (12%)
Query: 29 SALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN 88
S + + +L G F E+ V++G +G+GKT L+ +LAG +P +
Sbjct: 351 SRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-----D 405
Query: 89 SGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK 148
G M ++ TV + K+ Q+
Sbjct: 406 EGQDIPKLNV----SMKPQKIAPKFPG-------TVRQLF----FKKIRGQFLN---PQF 447
Query: 149 VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
+ L I + +HLSGG+ +R++I L L I +DEP+ LD
Sbjct: 448 QTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS 507
Query: 209 KLLRDMA-HQG-TMIICTLHQPSASLLNMADYLYVLTEG 245
K++R H T I H +AD + V
Sbjct: 508 KVIRRFILHNKKTAFIVE-HDF-IMATYLADKVIVFEGI 544
Score = 94.3 bits (235), Expect = 2e-20
Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%)
Query: 35 THSYSIKSKDILKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
TH YS S + + + ++ ++G +G GK+ L ILAG ++P +
Sbjct: 84 THRYSANSFKLHRLPT---PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140
Query: 94 INETRLQDHRMLRKESCYIMQDNL---LQELLTVEESLTVAAHLKLGNQ---YSRKAKES 147
+ L+ +++D++ ++ + ++ + +
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE 200
Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
V L + + LSGG+ +R +I + + + DEP++ LD N
Sbjct: 201 DVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNA 260
Query: 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+++R + +IC H S L ++D++ ++ G + G V
Sbjct: 261 AQIIRSLLAPTKYVICVEHDLSV-LDYLSDFVCII-YGVPSVYGVV 304
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 98.9 bits (247), Expect = 7e-22
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 26/192 (13%)
Query: 33 YDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
Y S L+ G E+ I+GP+G GKT + +LAG P G +
Sbjct: 360 YPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----TEGKV 413
Query: 93 EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
E + T Y Q + TV E L+ KL + + +
Sbjct: 414 EWDLTVA-----------YKPQYIKAEYEGTVYELLSKIDSSKLNSNF-------YKTEL 455
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
L I + + LSGG+ +R++IA LL + I LDEP+ LD + + +R
Sbjct: 456 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 515
Query: 213 DMA--HQGTMII 222
+ ++ T ++
Sbjct: 516 HLMEKNEKTALV 527
Score = 96.6 bits (241), Expect = 4e-21
Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 32/222 (14%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG------YRRPKKTETN 88
H Y + + + + + I+GP+G+GKT + ILAG +
Sbjct: 98 VHRYGVNA--FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNV 155
Query: 89 SGYIEINETRLQDHRMLRKESCYIMQD---NLLQELL--TVEESLTVAAHLKLGNQYSRK 143
NE + R+ E +++ +LL + + V E L +
Sbjct: 156 IRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELL------------KKV 203
Query: 144 AKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
+ K + + L + + LSGG+ +R++IA LL F DEP++ LD
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 204 ATNLVKLLRDMAHQG-TMIICT--LHQPSASLLNMADYLYVL 242
+ +++R +A++G +++ L A L ++D ++V+
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDL----AVLDYLSDVIHVV 301
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 88.5 bits (220), Expect = 1e-18
Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 32/222 (14%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG------YRRPKKTETN 88
H Y + + + V + I+GP+G+GK+ + ILAG +
Sbjct: 28 VHRYGVNA--FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV 85
Query: 89 SGYIEINETRLQDHRMLRKESCYIMQD---NLLQELL--TVEESLTVAAHLKLGNQYSRK 143
NE + ++ E +++ +L+ + + V E L +
Sbjct: 86 IRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL------------KKA 133
Query: 144 AKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
+ K++ + +L + +HLSGG+ +R++IA LL N + F DEP++ LD
Sbjct: 134 DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193
Query: 204 ATNLVKLLRDMAHQG-TMIICT--LHQPSASLLNMADYLYVL 242
N + +R ++ +G ++++ L A L ++D ++V+
Sbjct: 194 RLNAARAIRRLSEEGKSVLVVEHDL----AVLDYLSDIIHVV 231
Score = 87.0 bits (216), Expect = 3e-18
Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 27/181 (14%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL-QDHR 103
L+ G E+ I+GP+G GKT + +LAG P G IE + T +
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----TEGKIEWDLTVAYKPQY 355
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
+ + TV E L+ S+ + L I +
Sbjct: 356 IKAD-----YEG-------TVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDLYD 396
Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA--HQGTMI 221
LSGG+ +R++IA LL + I LDEP+ LD + + +R + ++ T +
Sbjct: 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Query: 222 I 222
+
Sbjct: 457 V 457
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 79.5 bits (197), Expect = 5e-17
Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 28/198 (14%)
Query: 44 DILKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET- 97
+ILK IS G FVS I+G SGSGK+ LL IL P G + +
Sbjct: 18 EILKGISLSVKKGEFVS-----IIGASGSGKSTLLYILGLLDAP-----TEGKVFLEGKE 67
Query: 98 --RLQDHRM--LRKESC-YIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
+ + LR ++ Q L+ EL T E+ V + + ++AKE + +
Sbjct: 68 VDYTNEKELSLLRNRKLGFVFQFHYLIPEL-TALEN--VIVPMLKMGKPKKEAKE-RGEY 123
Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
+ L + + LSGG+++R++IA L + P ++F DEPT LD N ++ +
Sbjct: 124 LLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183
Query: 212 RDMAHQG-TMIICTLHQP 228
+ G ++++ T H+
Sbjct: 184 LKINEGGTSIVMVT-HER 200
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 73.3 bits (181), Expect = 7e-15
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 40/213 (18%)
Query: 45 ILKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI------- 92
LK+++ G FVS I+GPSGSGK+ +L+I+ +P T
Sbjct: 20 ALKNVNLNIKEGEFVS-----IMGPSGSGKSTMLNIIGCLDKP----TEGEVYIDNIKTN 70
Query: 93 EINETRLQDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
++++ L R R + ++ Q NL+ L T E++ + K S + + +
Sbjct: 71 DLDDDELTKIR--RDKIGFVFQQFNLIPLL-TALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 152 IADSLSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
+ H LSGGQ++R++IA L +NP II D+PT LD +
Sbjct: 128 CLKMAELE---ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 208 VKLLRDMAHQG--TMIICTLHQPSASLLNMADY 238
++LL+ + + T+++ T H N+A +
Sbjct: 185 MQLLKKLNEEDGKTVVVVT-HDI-----NVARF 211
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 72.6 bits (179), Expect = 2e-14
Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 30/194 (15%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-- 102
+LK I+ E+ V++GPSGSGK+ L L + G I I+ L+
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-----DEGEIIIDGINLKAKDT 93
Query: 103 --RMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL--- 156
+R+E + Q NL + TV ++T L RK K ++ A L
Sbjct: 94 NLNKVREEVGMVFQRFNLFPHM-TVLNNIT------LAPMKVRKWPREKAEAKAMELLDK 146
Query: 157 -SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK----LL 211
+ + LSGGQ +R++IA L P I+ DEPT+ LD +V ++
Sbjct: 147 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD----PEMVGEVLSVM 202
Query: 212 RDMAHQG-TMIICT 224
+ +A++G TM++ T
Sbjct: 203 KQLANEGMTMVVVT 216
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 71.3 bits (176), Expect = 4e-14
Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 32/221 (14%)
Query: 45 ILKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD-- 101
+K I + V + ++ ++G +G+GKT L +AG R + G I N + +
Sbjct: 21 AIKGID-LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-----KGKIIFNGQDITNKP 74
Query: 102 -HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-- 158
H + R + + + LTV E+L + A Y+RK KE + S+
Sbjct: 75 AHVINRMGIALVPEGRRIFPELTVYENLMMGA-------YNRKDKEGIKRDLEWIFSLFP 127
Query: 159 --STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK----LLR 212
L LSGG+++ L+I L+S P ++ +DEP+ GL A LV +++
Sbjct: 128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL----APILVSEVFEVIQ 183
Query: 213 DMAHQGTMIICTL-HQPSASLLNMADYLYVLTEGYCTYQGT 252
+ +GT I+ L Q + L +A Y YVL G +G
Sbjct: 184 KINQEGTTIL--LVEQNALGALKVAHYGYVLETGQIVLEGK 222
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 70.3 bits (173), Expect = 1e-13
Identities = 46/201 (22%), Positives = 93/201 (46%), Gaps = 28/201 (13%)
Query: 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
+ ++ V+LGP+G+GK+ L+++AG +P + G + +N + R+ ++
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKP-----DRGEVRLNGADITPLPPERRGIGFVP 76
Query: 114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173
QD L L+V + +A L+ R ++ +V +A+ L I+ + LSGG+
Sbjct: 77 QDYALFPHLSVYRN--IAYGLR---NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGE 131
Query: 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--------G-TMIICT 224
++R+++A L+ P ++ LDEP + +D K + + ++ T
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDL-------KTKGVLMEELRFVQREFDVPILHVT 184
Query: 225 LHQPSASLLNMADYLYVLTEG 245
A +AD + V+ G
Sbjct: 185 HDLIEA--AMLADEVAVMLNG 203
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 69.5 bits (171), Expect = 2e-13
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 41/216 (18%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQDHRMLRKESCYIMQDN- 116
I+GP+GSGK+ L++++ G+ + + G + T + + Q
Sbjct: 38 IIGPNGSGKSTLINVITGFLKA-----DEGRVYFENKDITNKEPAELYHYGIVRTFQ-TP 91
Query: 117 -LLQELLTVEESLTVAAHLKLGN--------QYSRKAKES--KVDSIADSLSISTCKNTL 165
L+E+ TV E+L + + ++ K +E K I + L +S +
Sbjct: 92 QPLKEM-TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
LSGGQ K + I L++NP +I +DEP G+ A ++ + ++ +G
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITF---- 206
Query: 226 HQPSASLL---------NMADYLYVLTEGYCTYQGT 252
L+ N D+LYV+ G +G
Sbjct: 207 ------LIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 68.4 bits (168), Expect = 6e-13
Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 42/206 (20%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+LK +S + ++ I+G SGSGK+ L + +P + G I +N + +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----SEGAIIVNGQNI-NLVR 74
Query: 105 LRKESCYIMQDNLLQEL----------------LTVEESLTVAAHLKLG---NQYSRKAK 145
+ + N L+ L +TV E++ A LG + +A
Sbjct: 75 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERAL 134
Query: 146 E--SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
+ +KV I + + HLSGGQ++R+SIA L P ++ DEPT+ LD
Sbjct: 135 KYLAKV-GIDER-----AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD--- 185
Query: 204 ATNLV----KLLRDMAHQG-TMIICT 224
LV ++++ +A +G TM++ T
Sbjct: 186 -PELVGEVLRIMQQLAEEGKTMVVVT 210
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 68.9 bits (169), Expect = 1e-12
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 31/192 (16%)
Query: 37 SYSIKSKDI--LKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTET 87
+ ++ I L ++S L V ++G SG+GK+ L+ + RP
Sbjct: 33 VFHQGTRTIQALNNVS-------LHVPAGQIYGVIGASGAGKSTLIRCVNLLERP----- 80
Query: 88 NSGYIEINETRL-----QDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYS 141
G + ++ L + R++ I Q NLL TV + VA L+L N
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR-TVFGN--VALPLELDN-TP 136
Query: 142 RKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201
+ + +V + + + ++ +LSGGQK+R++IA L SNP ++ D+ T+ LD
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDP 196
Query: 202 LNATNLVKLLRD 213
++++LL+D
Sbjct: 197 ATTRSILELLKD 208
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 68.1 bits (166), Expect = 4e-12
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS--TC 161
M+ ++ +I + L++ + V L + R +++ L +
Sbjct: 837 MMSVDNAWIPRGELVESH--SKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894
Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI 221
++ + LSGGQK +L +A P +I LDEPT LD + L K L++ +G +I
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVI 952
Query: 222 ICTLHQPSASLLN-MADYLYVLTEGYCT-YQG 251
I T H SA + + ++ + +G T
Sbjct: 953 IIT-H--SAEFTKNLTEEVWAVKDGRMTPSGH 981
Score = 67.0 bits (163), Expect = 1e-11
Identities = 41/215 (19%), Positives = 67/215 (31%), Gaps = 29/215 (13%)
Query: 9 QDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSG 68
+ + N ++ L S + +K +L I GP+G G
Sbjct: 414 KRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCG 473
Query: 69 KTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESL 128
K+ L+ +A G+ E R Y + ++
Sbjct: 474 KSTLMRAIAN-------GQVDGFPTQEECRT----------VY-----VEHDIDGTHSDT 511
Query: 129 TVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNP 187
+V + + + + LSGG K +L++A +L N
Sbjct: 512 SVLDFVFESGV----GTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNA 567
Query: 188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
I+ LDEPT LD +N LV L T I
Sbjct: 568 DILLLDEPTNHLDTVNVAWLVNYLNT--CGITSIT 600
Score = 36.6 bits (84), Expect = 0.024
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
Y SK + DI+ ++GP+G+GK+ L+++L G P SG +
Sbjct: 678 EFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP-----TSGEVYT 732
Query: 95 NET 97
+E
Sbjct: 733 HEN 735
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 65.7 bits (161), Expect = 7e-12
Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 40/243 (16%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
F+++ +S Y ++ L+D+S + + ++GPSG+GK+ +L +L
Sbjct: 56 FENVHFS---YA------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL-----F 101
Query: 83 KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
+ + +SG I I+ + LR + QD +L + T+A +++ G
Sbjct: 102 RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-------NDTIADNIRYGRVT 154
Query: 141 SRKAKESKVDSIADSLSISTCKNTLTKH-----------LSGGQKKRLSIALELLSNPSI 189
A +V++ A + I + LSGG+K+R++IA +L P I
Sbjct: 155 ---AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211
Query: 190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249
I LDE T+ LD N + L + T I+ H+ S +++N AD + V+ +G
Sbjct: 212 ILLDEATSALDTSNERAIQASLAKVCANRTTIVVA-HRLS-TVVN-ADQILVIKDGCIVE 268
Query: 250 QGT 252
+G
Sbjct: 269 RGR 271
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 63.7 bits (156), Expect = 2e-11
Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 63/255 (24%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
F++I + Y S IL +I+ E+ I+G SGSGK+ L ++ + P
Sbjct: 10 FRNIRFR--------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 83 KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLL------------QELLTVEESL 128
+G + I+ L LR++ ++QDN+L ++VE+ +
Sbjct: 62 -----ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI 116
Query: 129 TVA----AH---LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
A AH +L Y+ E LSGGQ++R++IA
Sbjct: 117 YAAKLAGAHDFISELREGYNTIVGEQGA------------------GLSGGQRQRIAIAR 158
Query: 182 ELLSNPSIIFLDEPTTGLDY----LNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD 237
L++NP I+ DE T+ LDY + N+ K+ + +II H+ S + AD
Sbjct: 159 ALVNNPKILIFDEATSALDYESEHVIMRNMHKI---CKGRTVIIIA--HRLST--VKNAD 211
Query: 238 YLYVLTEGYCTYQGT 252
+ V+ +G QG
Sbjct: 212 RIIVMEKGKIVEQGK 226
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 62.6 bits (153), Expect = 5e-11
Identities = 56/243 (23%), Positives = 101/243 (41%), Gaps = 39/243 (16%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
F D+++S Y + LK I+ S ++G +GSGK+ + +L +
Sbjct: 20 FSDVNFS---YPKQ----TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 83 KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
G I+I + + +R + QD +L + T+ ++ G
Sbjct: 73 ------EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILF-------NETIKYNILYGKL- 118
Query: 141 SRKAKESKVDSIADSLSISTCKNTLTK-----------HLSGGQKKRLSIALELLSNPSI 189
A + +V S + L K LSGG+++R++IA LL +P I
Sbjct: 119 --DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI 176
Query: 190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249
+ DE T+ LD K + D+ T+II H+ S ++ + A+ + +L +G
Sbjct: 177 VIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA-HRLS-TISS-AESIILLNKGKIVE 233
Query: 250 QGT 252
+GT
Sbjct: 234 KGT 236
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 63.1 bits (153), Expect = 7e-11
Identities = 44/250 (17%), Positives = 77/250 (30%), Gaps = 42/250 (16%)
Query: 32 YYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT-----E 86
Y T + V E + PS + ++ L Y
Sbjct: 82 YRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQG 141
Query: 87 TNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE 146
+E +E R + R + + L EL S ++ +Y A+E
Sbjct: 142 QIDAILESDEAREKVVREVLNLDKFETAYKKLSELK--GGSGGTEELIEKVKKYKALARE 199
Query: 147 SKVDSIADSLSISTCKNTLTK---------------------------HLSGGQKKRLSI 179
+ + I + S + T K LSGG++ L +
Sbjct: 200 AALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGL 259
Query: 180 ALEL------LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL 233
A L S++ LDEPT LD L+ ++ + +I H L
Sbjct: 260 AFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELK 317
Query: 234 NMADYLYVLT 243
+ AD++ ++
Sbjct: 318 DAADHVIRIS 327
Score = 29.2 bits (65), Expect = 3.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLD----ILAGYRRPKKT 85
D F + +++I+G +GSGK+ LLD L R K
Sbjct: 14 HSDTVVEF-KEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDI 56
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 64.1 bits (157), Expect = 7e-11
Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 41/234 (17%)
Query: 37 SYSIKSKDILKDISGVFVSK--ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
Y + +L ++ F K L +LG +GSGK+ L++++ P+ + G +E+
Sbjct: 350 RYFENTDPVLSGVN--FSVKPGSLVAVLGETGSGKSTLMNLI-----PRLIDPERGRVEV 402
Query: 95 NET--RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
+E R + LR + Q+ +L S T+ +LK G + A + D I
Sbjct: 403 DELDVRTVKLKDLRGHISAVPQETVLF-------SGTIKENLKWGRE---DATD---DEI 449
Query: 153 ADSLSISTCKNTLTKH--------------LSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
++ I+ + + SGGQK+RLSIA L+ P ++ LD+ T+
Sbjct: 450 VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSS 509
Query: 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+D + ++ L+ T I T Q + L AD + VL EG GT
Sbjct: 510 VDPITEKRILDGLKRYTKGCTTFIIT--QKIPTALL-ADKILVLHEGKVAGFGT 560
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 8e-11
Identities = 78/455 (17%), Positives = 129/455 (28%), Gaps = 132/455 (29%)
Query: 184 LSNPSIIF-LDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS--ASLLNMADYLY 240
LS+ S+ L PT + A+ L + + + T +P+ A L+ +L
Sbjct: 11 LSHGSLEHVLLVPTA--SFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV--GKFL- 65
Query: 241 VLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNAN 300
GY + V PS D V+ + L FE C + N
Sbjct: 66 ----GYVSSL------VE---------PSKVGQFDQVLNLCLTE---FENC----YLEGN 99
Query: 301 SSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKV 360
H L + L ++ A I+ KR K V
Sbjct: 100 DIHALAAKLLQENDTTLVKT--KELIKNY--ITA------RIMAKRPFDKKSNSALFRAV 149
Query: 361 R---LSLHLIIGS-------F-----LGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTAL 405
L I G F L Y + D + L
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD-----------LIKFSAETLSEL 198
Query: 406 SSMIIT----YPLEFEITRREHFNRWFSLK-------AYYLATMVADIP----VQLLCTV 450
+ + I W L+ YL ++ P +QL
Sbjct: 199 IRTTLDAEKVFTQGLNILE------W--LENPSNTPDKDYLLSIPISCPLIGVIQLAH-- 248
Query: 451 IYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMIL---D-----VKNGVIF 502
Y VT + P EL + G++ + + D +
Sbjct: 249 -YVVTAKLLGFTPGELRSYLKGATGH--------SQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 503 GPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSL---EGI---LLSVYGYDRDQLK 556
+T+L + G P+ S L+ SL EG+ +LS+ ++Q++
Sbjct: 300 --ITVLFFI---GVRC-YEAYPNTS---LPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 557 CYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVS 591
Y + PA + + NG + +VS
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNL-----VVS 380
Score = 45.8 bits (108), Expect = 4e-05
Identities = 81/503 (16%), Positives = 148/503 (29%), Gaps = 168/503 (33%)
Query: 2 KSEEAELQDLKKSPRKHFN---LLFQDI-SYSA-LYYDTHSYSIKSKDILKD------IS 50
S+ + + F L DI + +A L + + +K+K+++K+ ++
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 51 GVFVSKEL-SVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKES 109
K+ S + G G +L+ I G G + ++ R L +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGG----------QG---NTDDYFEELRDLYQTY 180
Query: 110 CYIMQD------NLLQELLTVEESLTVAAHLKLG-------NQYSRKAKESKVDSIADSL 156
++ D L EL + +L G S + + SI S
Sbjct: 181 HVLVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 157 SIS----------TCKNT------LTKHLSG--GQKKRLSIALELLSNPSIIFLDEPTTG 198
+ T K L +L G G + L A+ + E +
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV---------AIAETDSW 289
Query: 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL--LNMADYLYVLTEGYCTYQGTVPGL 256
+ ++ K + + G C P+ SL + D L EG + ++ L
Sbjct: 290 ESFFV--SVRKAITVLFFIGVR--CYEAYPNTSLPPSILEDSLEN-NEGVPSPMLSISNL 344
Query: 257 -----VPYLSDFGYQCPSN-YNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTKTVLK 310
Y++ N + PA +E+SL N + N
Sbjct: 345 TQEQVQDYVNKT------NSHLPAGKQVEISL----------------VNGAKN------ 376
Query: 311 TIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKC----------FRDRFLTKV 360
V+S P L + L++ K F +R K+
Sbjct: 377 -----------L--VVSG---PPQS-LYGLNLTLRK--AKAPSGLDQSRIPFSER---KL 414
Query: 361 RLSLH-LIIG-----SFLGIMYRGIGDDAARVH---NNLSLLF--FSTMFLMFTA----- 404
+ S L + L I D + + N + + T F
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT----FDGSDLRV 470
Query: 405 --------LSSMIITYPLEFEIT 419
+ II P+++E T
Sbjct: 471 LSGSISERIVDCIIRLPVKWETT 493
Score = 28.5 bits (63), Expect = 9.0
Identities = 49/287 (17%), Positives = 83/287 (28%), Gaps = 113/287 (39%)
Query: 34 DTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI- 92
DT+ +SI DI+ + L++ G + I Y G +
Sbjct: 1655 DTYGFSIL--DIVIN-----NPVNLTIHFGGEKGKR-----IRENYSAMIFETIVDGKLK 1702
Query: 93 ------EINETRLQDHRMLRKESCYIM--QDNLLQE-------LLTVEESL--------- 128
EINE + Y + LL L +E++
Sbjct: 1703 TEKIFKEINE----------HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 129 -----TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL 183
T A H LG +Y+ A S+AD +SI + +E+
Sbjct: 1753 IPADATFAGH-SLG-EYAALA------SLADVMSIES-------------------LVEV 1785
Query: 184 LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA-DYLYVL 242
+ G+ A + RD + + ++ P + + + L +
Sbjct: 1786 VF----------YRGMTMQVA-----VPRDELGRSNYGMIAIN-PGRVAASFSQEALQYV 1829
Query: 243 TEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPAD--YVI---EVSLEA 284
E G LV NYN + YV +L+
Sbjct: 1830 VERVGKRTG---WLV---------EIVNYNVENQQYVAAGDLRALDT 1864
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 61.3 bits (150), Expect = 9e-11
Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 63/255 (24%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
+ + ++ YD S+ IL+DIS + GPSG GK+ + +L
Sbjct: 4 ARHVDFA---YDD------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-----E 49
Query: 83 KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLL-------------QELLTVEES 127
+ + +G I I+ + + + R + ++ QD+ + + T E+
Sbjct: 50 RFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDL 109
Query: 128 LTVA----AH---LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180
V A + +Q + + E V +SGGQ++RL+IA
Sbjct: 110 WQVLDLAFARSFVENMPDQLNTEVGERGV------------------KISGGQRQRLAIA 151
Query: 181 LELLSNPSIIFLDEPTTGLDYLNAT-NLVK--LLRDMAHQGTMIICTLHQPSASLLNMAD 237
L NP I+ LDE T LD + + ++V+ L M + T++I H+ S ++++ AD
Sbjct: 152 RAFLRNPKILMLDEATASLD--SESESMVQKALDSLMKGRTTLVIA--HRLS-TIVD-AD 205
Query: 238 YLYVLTEGYCTYQGT 252
+Y + +G T G
Sbjct: 206 KIYFIEKGQITGSGK 220
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 62.2 bits (152), Expect = 2e-10
Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 41/215 (19%)
Query: 46 LKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
L ++S G + ILGP+G+GKT L+++AG+ P +SG I ++ +
Sbjct: 16 LDNLSLKVESGEYFV-----ILGPTGAGKTLFLELIAGFHVP-----DSGRILLDGKDVT 65
Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA-KESKVDSIADSLSIS 159
D + + ++ Q+ L + V+++ + +++ +K +V A L I
Sbjct: 66 DLSPEKHDIAFVYQNYSLFPHMNVKKN--LEFGMRM-----KKIKDPKRVLDTARDLKIE 118
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL-------LR 212
+ LSGG+++R+++A L++NP I+ LDEP + LD + L
Sbjct: 119 HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP-------RTQENAREMLS 171
Query: 213 DMAHQ-G-TMIICTLHQPSASLLNMADYLYVLTEG 245
+ + T++ T Q A MAD + V+ +G
Sbjct: 172 VLHKKNKLTVLHITHDQTEA--RIMADRIAVVMDG 204
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 62.6 bits (153), Expect = 2e-10
Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 52/219 (23%)
Query: 4 EEAELQD-LKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV-- 60
E E + ++ R + + +D++++ Y K K L +S S+
Sbjct: 324 LETERDNGKYEAERVNGEVDVKDVTFT--------YQGKEKPALSHVS-------FSIPQ 368
Query: 61 -----ILGPSGSGKTKLLDILAG-YRRPKKTETNSGYIEINETRLQDHRM--LRKESCYI 112
++G SGSGK+ + ++ Y + +SG I ++ ++D+++ LR+ +
Sbjct: 369 GKTVALVGRSGSGKSTIANLFTRFY------DVDSGSICLDGHDVRDYKLTNLRRHFALV 422
Query: 113 MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS----ISTCKN---TL 165
Q+ L + T+A ++ + + +++ A I T+
Sbjct: 423 SQNVHLF-------NDTIANNIAYAAE--GEYTREQIEQAARQAHAMEFIENMPQGLDTV 473
Query: 166 TKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
LSGGQ++R++IA LL + ++ LDE T+ LD
Sbjct: 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 61.1 bits (149), Expect = 4e-10
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 28/211 (13%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
++ +S E+ +LGPSGSGKT +L ++AG RP G + I R+ D
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-----TKGDVWIGGKRVTDLPP 84
Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
++ + Q+ L + +TV ++ V+ L+ + +++V + + + + N
Sbjct: 85 QKRNVGLVFQNYALFQHMTVYDN--VSFGLREKRV-PKDEMDARVRELLRFMRLESYANR 141
Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM------AHQG 218
LSGGQ++R+++A L P ++ DEP +D ++ R++ H
Sbjct: 142 FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDT-------QIRRELRTFVRQVHDE 194
Query: 219 ---TMIICTLH-QPSASLLNMADYLYVLTEG 245
T + T H Q A L +AD + VL EG
Sbjct: 195 MGVTSVFVT-HDQEEA--LEVADRVLVLHEG 222
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 60.7 bits (148), Expect = 4e-10
Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 27/222 (12%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
+ L +++ + E ILGPSG+GKT + I+AG P ++G + ++
Sbjct: 12 VFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-----STGELYFDD 66
Query: 97 TRLQDHRMLR---KESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
+ + L ++ M Q L LT E+ +A L + S++ +V+
Sbjct: 67 RLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFEN--IAFPLTN-MKMSKEEIRKRVEE 123
Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA------- 204
+A L I N + LSG Q++R+++A L+ +PS++ LDEP + LD A
Sbjct: 124 VAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD---ARMRDSAR 180
Query: 205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
+ ++ + T+++ + +AD + VL +G
Sbjct: 181 ALVKEVQSRL--GVTLLVVSHDPADI--FAIADRVGVLVKGK 218
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 60.3 bits (147), Expect = 1e-09
Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 70/228 (30%)
Query: 4 EEAELQDLKKS-PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV-- 60
E E + K+ R +L F++++++ Y + L++I+ L +
Sbjct: 324 SEQEKDEGKRVIDRATGDLEFRNVTFT--------YPGREVPALRNIN-------LKIPA 368
Query: 61 -----ILGPSGSGKTKLLDILAG-YRRPKKTETNSGYIEINETRLQDHRM--LRKESCYI 112
++G SGSGK+ + ++ Y + + G+I ++ L+++ + LR + +
Sbjct: 369 GKTVALVGRSGSGKSTIASLITRFY------DIDEGHILMDGHDLREYTLASLRNQVALV 422
Query: 113 MQDNLL-------------QELLTVEESLTVA----AH---LKLGNQYSRKAKESKVDSI 152
Q+ L E + E+ A A K+ N E+ V
Sbjct: 423 SQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL-- 480
Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
LSGGQ++R++IA LL + I+ LDE T+ LD
Sbjct: 481 ----------------LSGGQRQRIAIARALLRDSPILILDEATSALD 512
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 58.9 bits (143), Expect = 4e-09
Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 34/233 (14%)
Query: 35 THSY-SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
SY S K ILK ++ S + ++G SG GK+ + ++ P G +
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-----LDGMVS 448
Query: 94 INETRLQD--HRMLRKESCYIMQ----------DNLLQELLTVEESLTVAAHLKLGNQYS 141
I+ ++ R LR+ + Q +N+ V A
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKA--------- 499
Query: 142 RKAKESKVDSIADSLS--ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199
KE+ L T LSGGQK+R++IA L+ NP I+ LDE T+ L
Sbjct: 500 --VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557
Query: 200 DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
D + + L T I+ H+ S + AD + G QG
Sbjct: 558 DTESEAVVQAALDKAREGRTTIVIA-HRLST--VRNADVIAGFDGGVIVEQGN 607
Score = 52.0 bits (125), Expect = 6e-07
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMIICTLHQ 227
LSGGQK+R++IA L+ P I+ LDE T+ LD + +V+ D A +G T I+ H+
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKAREGRTCIVIA-HR 1229
Query: 228 PSASLLNM---ADYLYVLTEGYCTYQGT 252
L+ AD + V+ G GT
Sbjct: 1230 -----LSTIQNADLIVVIQNGKVKEHGT 1252
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 52.8 bits (127), Expect = 2e-08
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 169 LSGGQKKRLSIALEL------LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMI 221
LSGG++ L +A L S++ LDEPT LD L+ ++ + +I
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 222 ICTLHQPSASLLNMADYL 239
+ + H L + AD++
Sbjct: 118 LVS-HDE--ELKDAADHV 132
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 54.3 bits (131), Expect = 5e-08
Identities = 48/236 (20%), Positives = 77/236 (32%), Gaps = 61/236 (25%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-- 94
Y+ IL++IS + +LG +GSGK+ LL G I+I
Sbjct: 28 KYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR------LLNTEGEIQIDG 81
Query: 95 ---NETRLQDHRMLRKESCYIMQDNLL-----------------QELLTVEESLTVAAHL 134
+ L+ RK I Q + QE+ V + L
Sbjct: 82 VSWDSITLEQ---WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADE----VGL 134
Query: 135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
+ S ++ L LS G K+ + +A +LS I+ LDE
Sbjct: 135 R-----------SVIEQFPGKLDFVLVDGG--CVLSHGHKQLMCLARSVLSKAKILLLDE 181
Query: 195 PTTGLDYLNATNLV--KLLRDMAHQGTMIICTLHQPSASLLN---MADYLYVLTEG 245
P+ LD T + + L+ A +I + + D V+ E
Sbjct: 182 PSAHLDP--VTYQIIRRTLKQ-AFADCTVILCEAR-----IEAMLECDQFLVIEEN 229
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 54.1 bits (131), Expect = 6e-08
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 42/208 (20%)
Query: 57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML----RKESCYI 112
E+ I+G SG GKT LL LAG+ +P +SG I ++ + + Y+
Sbjct: 31 EILFIIGASGCGKTTLLRCLAGFEQP-----DSGEISLSGKTIFSKNTNLPVRERRLGYL 85
Query: 113 MQD-----NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
+Q+ + LTV + +A L G + +++++ + IS
Sbjct: 86 VQEGVLFPH-----LTVYRN--IAYGLGNGKG-RTAQERQRIEAMLELTGISELAGRYPH 137
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--------G- 218
LSGGQ++R ++A L +P +I LDEP + LD +L R + G
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALD-------EQLRRQIREDMIAALRANGK 190
Query: 219 TMIICTLH-QPSASLLNMADYLYVLTEG 245
+ + + H + A L AD + V+ +G
Sbjct: 191 SAVFVS-HDREEA--LQYADRIAVMKQG 215
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 53.0 bits (128), Expect = 2e-07
Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 58/194 (29%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTET 87
+ Y+ ILKDI+ LS+ +G SG GK+ L++++ P+ +
Sbjct: 346 SFQYNDNEAPILKDIN-------LSIEKGETVAFVGMSGGGKSTLINLI-----PRFYDV 393
Query: 88 NSGYIEINETRLQDHRM--LRKESCYIMQDNLL------------QELLTVEESLTVA-- 131
SG I I+ ++D LR + + QDN+L + T EE + A
Sbjct: 394 TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKM 453
Query: 132 --AH---LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
AH + L Y +++V LS GGQK+RLSIA L+N
Sbjct: 454 ANAHDFIMNLPQGY-----DTEVGERGVKLS-------------GGQKQRLSIARIFLNN 495
Query: 187 PSIIFLDEPTTGLD 200
P I+ LDE T+ LD
Sbjct: 496 PPILILDEATSALD 509
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 51.0 bits (123), Expect = 3e-07
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 45/178 (25%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DH 102
+L+ ++ +++ ++GP+GSGK+ + +L +P G + ++ L DH
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP-----TGGKVLLDGEPLVQYDH 88
Query: 103 RMLRKESCYIMQ----------DNL---LQELLTVEESLTVA----AH---LKLGNQYSR 142
L + + Q +N+ L T+EE VA AH Y
Sbjct: 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDT 148
Query: 143 KAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+ E+ LSGGQ++ +++A L+ P ++ LD T+ LD
Sbjct: 149 EVGETGN------------------QLSGGQRQAVALARALIRKPRLLILDNATSALD 188
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 50.8 bits (122), Expect = 4e-07
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGTMIICTLHQ 227
LSGGQ+ R+S+A + + + LD P LD L + + + T I+ T +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT-SK 218
Query: 228 PSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
L AD + +L EG + GT L DF
Sbjct: 219 --MEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252
Score = 33.5 bits (77), Expect = 0.16
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 38 YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
+S+ +LKDI+ +L + G +G+GKT LL ++ G
Sbjct: 46 FSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 51.0 bits (122), Expect = 6e-07
Identities = 36/215 (16%), Positives = 76/215 (35%), Gaps = 16/215 (7%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN------E 96
+ + + G+ ++ +G K L+ + G K+ + E++ E
Sbjct: 149 LETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKE 208
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
+ L K ++ L L + +++ ++ +
Sbjct: 209 KLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVR 268
Query: 157 SISTCKNTLTKHLSGGQKKRLSIAL-----ELLSNPSI--IFLDEPTTGLDYLNATNLVK 209
+ +LSGG++ ++++L L + I LDEPT LD L +
Sbjct: 269 VHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAE 328
Query: 210 LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244
+ R + MII T H L ++AD + + +
Sbjct: 329 IFRKVKSIPQMIIIT-HHR--ELEDVADVIINVKK 360
Score = 28.3 bits (63), Expect = 8.1
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 55 SKELSVILGPSGSGKTKLLD 74
K + I+G +GSGK+ + +
Sbjct: 24 EKGIVAIIGENGSGKSSIFE 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 49.9 bits (120), Expect = 6e-07
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGTMIICTLH 226
LSGGQ+ R+S+A + + + LD P LD L + + + T I+ T
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT-S 188
Query: 227 QPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
+ L AD + +L EG + GT L DF
Sbjct: 189 K--MEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 223
Score = 34.8 bits (81), Expect = 0.057
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
T + +LKDI+ +L + G +G+GKT LL ++ G
Sbjct: 13 TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 7e-07
Identities = 49/382 (12%), Positives = 113/382 (29%), Gaps = 116/382 (30%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKL-LDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
L+ V + G GSGKT + LD+ Y+ K + ++ + + +
Sbjct: 147 LRPAKNVLID-------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 105 LRKES-CYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--------VDSIADS 155
+ Y + N + S + + R+ +SK + ++ ++
Sbjct: 200 EMLQKLLYQIDPNWTSRS---DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 156 LSIST----CKNTL--------TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL--DY 201
+ + CK L T LS +S L + S+ + L Y
Sbjct: 257 KAWNAFNLSCK-ILLTTRFKQVTDFLSAATTTHIS-----LDHHSMTLTPDEVKSLLLKY 310
Query: 202 LNATNLVKLLRDMAHQGT-MIICTLHQPSASLLNMAD----YLYVLTEGYCTYQGTVPGL 256
L+ + L + + + S+ + + +V
Sbjct: 311 LDCR--PQDLPREVLTTNPRRLSII---AESIRDGLATWDNWKHV--------------- 350
Query: 257 VPYLSDFGYQCPSNYNPADYVIEVSLEA------DRMFEPCTNGKFFNANSSHNTKTVLK 310
N + +IE SL +MF+ + F ++
Sbjct: 351 -------------NCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAH-------- 386
Query: 311 TIEEKGLSSKEFYSVLSTEIPY--PADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLII 368
I L S++ ++ +++ K +L++ +S+ I
Sbjct: 387 -IPTILL------SLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKES----TISIPSIY 432
Query: 369 GSFLGIMYRGIGDDAARVHNNL 390
+ + ++ +H ++
Sbjct: 433 -----LELKVKLENEYALHRSI 449
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 49.5 bits (119), Expect = 2e-06
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 12/158 (7%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
L +I+ E +LGPSGSGK+ LL +AG + SG I +E + + +
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI-----YKPTSGKIYFDEKDVTE--L 70
Query: 105 LRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
K+ + Q+ L +TV +++ A L+L + R+ + KV +A L I
Sbjct: 71 PPKDRNVGLVFQNWALYPHMTVYKNI--AFPLEL-RKAPREEIDKKVREVAKMLHIDKLL 127
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
N LSGGQ++R++IA L+ P ++ LDEP + LD
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 48.0 bits (115), Expect = 5e-06
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 12/158 (7%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+ +S E +LGPSG GKT L +LAG + SG I ++ + D +
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY-----KPTSGEIYFDDVLVND--I 70
Query: 105 LRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
K M Q+ L +TV E++ L+ + S+ E +V IA L I
Sbjct: 71 PPKYREVGMVFQNYALYPHMTVFENIAFP--LRA-RRISKDEVEKRVVEIARKLLIDNLL 127
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+ LSGGQ++R+++A L+ P ++ DEP + LD
Sbjct: 128 DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 48.4 bits (116), Expect = 6e-06
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
LSGGQK+R++IA LL NP I+ LDE T+ LD
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALD 515
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 45.2 bits (108), Expect = 2e-05
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK---LLRDMAHQGTMIICTL 225
LSGGQK+R+S+A + SN I D+P + +D ++ + + M T I+ T
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT- 186
Query: 226 HQPSASLLNMADYLYVLTEGYCTYQGT 252
H S L D + V++ G + G+
Sbjct: 187 HS--MSYLPQVDVIIVMSGGKISEMGS 211
Score = 34.8 bits (81), Expect = 0.055
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
T +++ L I+ L ++G G GK+ LL L
Sbjct: 10 TFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 46.1 bits (110), Expect = 2e-05
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
+ ++ E V+LGPSG GKT L ++AG E G I + + +
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-----EEPTEGRIYFGDRDVTY--L 78
Query: 105 LRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
K+ M Q + +TV E++ A LK+ ++ + + +V A+ L I
Sbjct: 79 PPKDRNISMVFQSYAVWPHMTVYENI--AFPLKI-KKFPKDEIDKRVRWAAELLQIEELL 135
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
N LSGGQ++R+++A ++ P ++ +DEP + LD
Sbjct: 136 NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 45.2 bits (108), Expect = 3e-05
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 62/194 (31%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
SI + ILK ++ V E+ ++GP+G+GK+ L ILAG P+ T G I ++
Sbjct: 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVE-RGEILLDG-- 66
Query: 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH--LKLGNQY---------------- 140
+N+L+ L+ +E A L L QY
Sbjct: 67 ----------------ENILE--LSPDER----ARKGLFLAFQYPVEVPGVTIANFLRLA 104
Query: 141 --SRKAKE-------SKVDSIADSLSISTCKNTLTKHL----SGGQKKRLSIA-LELLSN 186
++ +E +KV + L ++ L+++L SGG+KKR I L +L
Sbjct: 105 LQAKLGREVGVAEFWTKVKKALELLDWD--ESYLSRYLNEGFSGGEKKRNEILQLLVL-E 161
Query: 187 PSIIFLDEPTTGLD 200
P+ LDE +GLD
Sbjct: 162 PTYAVLDETDSGLD 175
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 45.7 bits (109), Expect = 3e-05
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 14/162 (8%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
++++S E ++LGPSG GKT L ++AG E + G I I + + D
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-----EEPSRGQIYIGDKLVADPEK 72
Query: 105 LR----KESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
K+ M Q L +TV +++ LKL + R+ + +V +A+ L +
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP--LKL-RKVPRQEIDQRVREVAELLGL 129
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+ N + LSGGQ++R+++ ++ P + +DEP + LD
Sbjct: 130 TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 43.3 bits (103), Expect = 1e-04
Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 66/198 (33%)
Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
S++ K IL+ +S E+ I+GP+GSGK+ L LAG R E G +E
Sbjct: 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG--RE-DYEVTGGTVEFKG-- 83
Query: 99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH--LKLGNQY---------------- 140
+LL L+ E+ A + + QY
Sbjct: 84 ----------------KDLLA--LSPEDR----AGEGIFMAFQYPVEIPGVSNQFFLQTA 121
Query: 141 ---SRKAK----------ESKVDSIADSLSISTCKNTLTKHL----SGGQKKRLSIA-LE 182
R + + ++ L + ++ LT+ + SGG+KKR I +
Sbjct: 122 LNAVRSYRGQETLDRFDFQDLMEEKIALLKMP--EDLLTRSVNVGFSGGEKKRNDILQMA 179
Query: 183 LLSNPSIIFLDEPTTGLD 200
+L P + LDE +GLD
Sbjct: 180 VL-EPELCILDESDSGLD 196
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 41.8 bits (99), Expect = 6e-04
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 41/212 (19%)
Query: 4 EEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV-IL 62
EE + D + + F+++ +S YD K K +LKDI+ + V ++
Sbjct: 338 EEKDDPDAVELREVRGEIEFKNVWFS---YD------KKKPVLKDIT-FHIKPGQKVALV 387
Query: 63 GPSGSGKTKLLDILAG-YRRPKKTETNSGYI-----EINETRLQDHRMLRKESCYIMQDN 116
GP+GSGKT ++++L Y + + G I +I + + LR ++QD
Sbjct: 388 GPTGSGKTTIVNLLMRFY------DVDRGQILVDGIDIRKIKRSS---LRSSIGIVLQDT 438
Query: 117 LLQELLTVEESLTVAAHLKLGN------QYSRKAKESKVDSIADSLS--ISTCKNTLTKH 168
+L S TV +LK GN + AK + D L T +
Sbjct: 439 ILF-------STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
LS GQ++ L+I L+NP I+ LDE T+ +D
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 41.0 bits (97), Expect = 8e-04
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 46/176 (26%)
Query: 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD-- 101
+ KDI+ E V +GPSG GK+ LL ++AG SG + I E R+ D
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-----TITSGDLFIGEKRMNDTP 71
Query: 102 -----------------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
H L+V E++ + LKL ++
Sbjct: 72 PAERGVGMVFQSYALYPH-------------------LSVAENM--SFGLKL-AGAKKEV 109
Query: 145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+V+ +A+ L ++ + K LSGGQ++R++I L++ PS+ LDEP + LD
Sbjct: 110 INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 38.8 bits (91), Expect = 0.001
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 169 LSGGQKKRLSIALE---LLSNPS-IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
+SGG+K ++A P+ DE LD N + L+++ + + I+ T
Sbjct: 65 MSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124
Query: 225 LHQPSASLLNMADYLYVLT--EG 245
+ + AD + ++ +G
Sbjct: 125 -LRDVM--MANADKIIGVSMRDG 144
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 39.8 bits (93), Expect = 0.002
Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%)
Query: 69 KTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESL 128
+ AG KK + S + + S Y L L + L
Sbjct: 188 ISSGGAGGAGGSLEKKLKEMSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYL 247
Query: 129 TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL-----EL 183
+ + + + + + LSGG++ +SI+L E+
Sbjct: 248 DILTNGRFDIDFDDEKGGFIIKDWGIERPARG--------LSGGERALISISLAMSLAEV 299
Query: 184 LSNP-SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
S F+DE + LD N + +L+++ +I+
Sbjct: 300 ASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Score = 28.3 bits (63), Expect = 8.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 55 SKELSVILGPSGSGKTKLLD 74
++V+ GP+G+GK+ L +
Sbjct: 22 QSGITVVEGPNGAGKSSLFE 41
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 35.7 bits (83), Expect = 0.034
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 169 LSGGQKKRLSIALE---LLSNPS-IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
LSGG+K + +AL + PS LDE + LD NA +LL++ + I+ T
Sbjct: 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVIT 279
Query: 225 LHQPSASLLNMADYLY 240
H + AD L+
Sbjct: 280 -HNKIV--MEAADLLH 292
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 35.4 bits (82), Expect = 0.054
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 168 HLSGGQKKRLSIALE---LLSNPSIIF-LDEPTTGLDYLNATNLVKLLRDMAHQGT-MII 222
+LSGG+K ++AL PS F LDE LD N + +R + I+
Sbjct: 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIV 392
Query: 223 CTLHQPSASLLNMADYLY-VLT 243
+L ++ +D L V
Sbjct: 393 ISLKN---TMFEKSDALVGVYR 411
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein
binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Length = 150
Score = 33.1 bits (75), Expect = 0.11
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
L N I+F DE TG D L + + L +A+
Sbjct: 37 DLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYS 74
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 34.1 bits (79), Expect = 0.12
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 28 YSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET 87
Y YD S K+ + + ++ + ++ GPSG GK+ +L L ++ T
Sbjct: 138 YRDAGYDVLKVSAKTGEGIDELVDYLEGF-ICILAGPSGVGKSSILSRLT----GEELRT 192
Query: 88 N 88
Sbjct: 193 Q 193
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 33.7 bits (78), Expect = 0.22
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 169 LSGGQKKRLSIALELLSNPS----IIFLDEPTTGL 199
LSGG+ +R+ +A EL S + LDEPTTGL
Sbjct: 544 LSGGEAQRVKLAAEL-HRRSNGRTLYILDEPTTGL 577
Score = 31.3 bits (72), Expect = 1.2
Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 22/171 (12%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLL---DILAGYRRPKKTETNSGYIEINETRLQDH 102
LK+I +L V+ G SGSGK+ L G RR E+ S Y + Q
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYV--ESLSAY--ARQFLGQME 89
Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES---KVD--SIAD--S 155
+ + + + T + + Y R V I + +
Sbjct: 90 KPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTA 149
Query: 156 LSISTCKNTLTK-HLSGGQKKRLSIALELLS--NPSIIFLDEPTTGLDYLN 203
+S++ L+ + + IA +L + FL GLDYL
Sbjct: 150 MSVTEALAFFDGLELTEKEAQ---IARLILREIRDRLGFLQN--VGLDYLT 195
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 33.2 bits (77), Expect = 0.26
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 169 LSGGQKKRLSIALELLSNPS----IIFLDEPTTGL 199
LSGG+ +R+ +A EL + LDEPT GL
Sbjct: 806 LSGGEAQRIKLASEL-RKRDTGRTLYILDEPTVGL 839
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 32.9 bits (76), Expect = 0.34
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 169 LSGGQKKRLSIALELLSNPS----IIFLDEPTTGL 199
LSGG+ +R+ +A EL S + LDEPTTGL
Sbjct: 846 LSGGEAQRVKLAAEL-HRRSNGRTLYILDEPTTGL 879
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 32.6 bits (75), Expect = 0.34
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 28 YSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT 85
Y + Y S ++D LK + + +S+ G SG GK+ LL+ L G + T
Sbjct: 188 YRNIGYRVLMVSSHTQDGLKPLEEALTGR-ISIFAGQSGVGKSSLLNALLGLQNEILT 244
>1ncq_B Coat protein VP2; HRV, pleconaril, icosahedral virus; HET: W11;
2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_2*
1hrv_2* 1na1_B* 1hri_2* 1r08_2* 1r09_2* 1rmu_2 1ruc_2*
1rud_2* 1rue_2* 1ruf_2 1rug_2* 1ruh_2* 1rui_2* 1ruj_2
1rvf_2 1vrh_2* 2r04_2* 2r06_2* 2r07_2* ...
Length = 262
Score = 32.2 bits (73), Expect = 0.40
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 228 PSASLLNMADYLYVLTEGYCTY--QGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEAD 285
P+ +D + +T G T Q +V Y Y + + + +
Sbjct: 2 PNVEACGYSDRVQQITLGNSTITTQEAANAVVCYAEWPEYLPDVDASDVNKTSKPDTSVC 61
Query: 286 RMF 288
R +
Sbjct: 62 RFY 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 32.9 bits (76), Expect = 0.42
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 169 LSGGQKKRLSIALELLSNPS----IIFLDEPTTGL 199
LSGG+ +R+ +A EL S + LDEPTTGL
Sbjct: 864 LSGGEAQRVKLASEL-QKRSTGRTVYILDEPTTGL 897
Score = 29.4 bits (67), Expect = 4.2
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKL-LDIL--AGYRRPKKTETNSGY 91
L+ + L V G SGSGK+ L D + G RR E+ S Y
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRR--YVESLSAY 82
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 32.2 bits (74), Expect = 0.42
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 28 YSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL 73
Y + YD + S K +D L DI F K +V G SG GK+ LL
Sbjct: 146 YRNIGYDVYLTSSKDQDSLADIIPHFQDK-TTVFAGQSGVGKSSLL 190
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 32.5 bits (75), Expect = 0.43
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 169 LSGGQKKRLSIALELLSNPS----IIFLDEPTTGL 199
LSGG+ +R+ +A EL + LDEPTTGL
Sbjct: 731 LSGGEAQRIKLATEL-RRSGRGGTVYVLDEPTTGL 764
>1hxs_2 Genome polyprotein, coat protein VP2; picornavirus, AB initio phase
DETE icosahedral virus; HET: MYR PLM; 2.20A {Human
poliovirus 1} PDB: 1ar6_2* 1ar8_2* 1asj_2* 1al2_2*
1nn8_2 1po1_2* 1po2_2* 1vbd_2* 2plv_2* 1ar7_2* 1ar9_2*
3epc_2* 1dgi_2* 3iyb_4 3iyc_4 1eah_2* 1xyr_2 3epf_2*
1pvc_2* 1piv_2* ...
Length = 272
Score = 31.8 bits (72), Expect = 0.49
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 228 PSASLLNMADYLYVLTEGYCTY--QGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEAD 285
P+ +D + LT G T Q +V Y Y S NP D E + A
Sbjct: 2 PNIEACGYSDRVLQLTLGNSTITTQEAANSVVAYGRWPEYLRDSEANPVDQPTEPDVAAC 61
Query: 286 RMF 288
R +
Sbjct: 62 RFY 64
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.95
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 20/47 (42%)
Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
Q L ++ S LKL Y A +S A +L+I K T+
Sbjct: 20 QALKKLQAS------LKL---Y---ADDS-----APALAI---KATM 46
Score = 28.4 bits (62), Expect = 4.3
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 7 ELQDLKK--SPRKHFNLLFQDISYSALYYDTHSYSIKS 42
E Q LKK + K L+ D S AL +IK+
Sbjct: 18 EKQALKKLQASLK----LYADDSAPAL-------AIKA 44
Score = 28.0 bits (61), Expect = 5.3
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 17/39 (43%)
Query: 173 QK---KRLSIALELL---SNPSIIFLDEPTTGLDYLNAT 205
+K K+L +L+L S P++ + AT
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA-----------IKAT 45
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich,
autocatalytic cleavage, cell membrane, developmental
protein, disease mutation; 1.44A {Homo sapiens} PDB:
3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A
3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A
2wfr_A 2wg3_A*
Length = 187
Score = 30.2 bits (67), Expect = 1.2
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
L NP IIF DE TG D L L +A
Sbjct: 65 ELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAI 101
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 30.6 bits (70), Expect = 1.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 28 YSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL 73
YS LY S K+ ++++ K +S + G SG GK+ LL
Sbjct: 143 YSGLY-PIVKTSAKTGMGIEELKEYLKGK-ISTMAGLSGVGKSSLL 186
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 1.4
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 255 GLVPYLSDF----GYQCPSNYNPADYVIEVSLEADRM 287
+P F Q P+ +N Y I ++
Sbjct: 974 LYIPKALRFDRLVAGQIPTGWNAKTYGISDD-IISQV 1009
>1pov_0 Poliovirus native empty capsid (type 1); picornavirus, icosahedral
virus; HET: MYR SPH; 2.80A {Human poliovirus 1} SCOP:
b.121.4.1
Length = 340
Score = 30.7 bits (69), Expect = 1.4
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 224 TLHQPSASLLNMADYLYVLTEGYCTY--QGTVPGLVPYLSDFGYQCPSNYNPADYVIEVS 281
L+ P+ +D + LT G T Q +V Y Y S NP D E
Sbjct: 66 MLNSPNIEACGYSDRVLQLTLGNSTITTQEAANSVVAYGRWPEYLRDSEANPVDQPTEPD 125
Query: 282 LEADRMF 288
+ A R +
Sbjct: 126 VAACRFY 132
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 30.1 bits (68), Expect = 1.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 44 DILKDISGVFVSKELSV-ILGPSGSGKTKLL 73
+ L SG S + S+ I GP SGKT LL
Sbjct: 35 EKLGGGSGGGGSYQPSIIIAGPQNSGKTSLL 65
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 30.2 bits (68), Expect = 2.5
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 60 VILGPSGSGKTKLLDILAG 78
+++G +G GKT +
Sbjct: 927 ILVGKAGCGKTATWKTVID 945
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 29.8 bits (68), Expect = 2.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 8/38 (21%)
Query: 59 SVIL-GPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95
S+IL GP G+GKT L +++A Y N+ I+
Sbjct: 52 SMILWGPPGTGKTTLAEVIARY-------ANADVERIS 82
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 30.0 bits (68), Expect = 2.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 55 SKELSVILGPSGSGKTKL 72
SK++ VI G +G GK++L
Sbjct: 1 SKKVIVIAGTTGVGKSQL 18
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 29.3 bits (66), Expect = 2.9
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 55 SKELSV-ILGPSGSGKTKLL 73
S + +V +G SGKT L
Sbjct: 5 SSQRAVLFVGLCDSGKTLLF 24
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.0 bits (65), Expect = 3.6
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 55 SKELSV-ILGPSGSGKTKLL 73
S + S+ I GP SGKT LL
Sbjct: 10 SYQPSIIIAGPQNSGKTSLL 29
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 29.4 bits (65), Expect = 4.0
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 26 ISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL 73
+S ++ Y + + +LKD S ++ ++ G G GKTK +
Sbjct: 131 VSSESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEI 178
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide),
DNA-binding regulatory complex (regulatory
protein-peptide) complex; HET: TRP; 1.30A {Escherichia
coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R*
1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R
2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Length = 101
Score = 27.6 bits (61), Expect = 4.1
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
+L+ + LL +LT +E + +++ + R + + + L
Sbjct: 17 DLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQR--ELKNELGAGIAT 74
Query: 163 NT----LTKHLSGGQKKRLSIAL 181
T K ++ L L
Sbjct: 75 ITRGSNSLKAAPVELRQWLEEVL 97
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 28.1 bits (63), Expect = 4.5
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 55 SKELSVILGPSGSGKTKLLD 74
+ +++I+G +GSGK+ LLD
Sbjct: 22 KEGINLIIGQNGSGKSSLLD 41
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 28.2 bits (64), Expect = 4.8
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 60 VILGPSGSGKTKLLDIL 76
V+LG G G+ + + L
Sbjct: 9 VLLGAHGVGRRHIKNTL 25
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 28.3 bits (64), Expect = 5.1
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 60 VILGPSGSGKTKLLDIL 76
V++G SG G++ + + L
Sbjct: 23 VLIGASGVGRSHIKNAL 39
>1ugj_A Riken cDNA 2310057J16 protein; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.41.1.3
Length = 141
Score = 28.0 bits (62), Expect = 5.3
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 8 LQDLKKSPRKHFNLLFQDIS--YSALYYDTHSYSIKSKDILKDISGV 52
L++++KS HF +LF+D S + ALY + S +++++ + ++G
Sbjct: 45 LEEIEKSKANHFLILFRDSSCQFRALY----TLSGETEELSR-LAGY 86
>1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed
mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A
{Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B*
1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2*
2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B* 3tn9_2
Length = 261
Score = 28.7 bits (64), Expect = 5.9
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 228 PSASLLNMADYLYVLTEGYCTY--QGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEAD 285
PS +D + +T G T Q +V Y Y P + D + ++
Sbjct: 2 PSVEACGYSDRIIQITRGDSTITSQDVANAVVGYGVWPHYLTPQDATAIDKPTQPDTSSN 61
Query: 286 RMF 288
R +
Sbjct: 62 RFY 64
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 28.4 bits (63), Expect = 7.5
Identities = 6/13 (46%), Positives = 12/13 (92%)
Query: 60 VILGPSGSGKTKL 72
V++G +G+GK++L
Sbjct: 44 VLMGATGTGKSRL 56
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase
family 31, (beta/alpha)8 barre; HET: PXN; 2.30A
{Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Length = 1020
Score = 28.7 bits (64), Expect = 7.9
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 243 TEGYCTYQGTVPGLVPYLSDFGY-QCPSNYNPADYVIEVSLEADRMFE---PC 291
GY G ++P + +G+ Q Y +D +I+ + P
Sbjct: 417 ISGYRQLTGKSV-MLPKWA-YGFWQSRERYKSSDEIIQN---LKEYRDRKIPI 464
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 27.7 bits (62), Expect = 8.6
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 55 SKELSVILGPSGSGKTKLLD 74
+ +++I+G +GSGK+ LLD
Sbjct: 22 KEGINLIIGQNGSGKSSLLD 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.409
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,986,710
Number of extensions: 531167
Number of successful extensions: 1698
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1630
Number of HSP's successfully gapped: 157
Length of query: 612
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 513
Effective length of database: 3,937,614
Effective search space: 2019995982
Effective search space used: 2019995982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.0 bits)