RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12625
(612 letters)
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 129 bits (327), Expect = 9e-35
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 21/242 (8%)
Query: 15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLD 74
K + +S+ Y+ ILKDI+ E +G SG GK+ L++
Sbjct: 11 EIKQGRIDIDHVSFQ--------YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN 62
Query: 75 ILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAA 132
++ + SG I I+ ++D LR + + QDN+L TV+E++ +
Sbjct: 63 LIPRFYDV-----TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR 116
Query: 133 HLKLGNQYSRKAKESKVDSIADSLS--ISTCKNTLTKHLSGGQKKRLSIALELLSNPSII 190
+ AK + +L T LSGGQK+RLSIA L+NP I+
Sbjct: 117 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 176
Query: 191 FLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250
LDE T+ LD + + + + L ++ T +I H+ S + AD + V+ G+
Sbjct: 177 ILDEATSALDLESESIIQEALDVLSKDRTTLIVA-HRLST--ITHADKIVVIENGHIVET 233
Query: 251 GT 252
GT
Sbjct: 234 GT 235
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 123 bits (309), Expect = 1e-32
Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 17/229 (7%)
Query: 35 THSYSIKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
T +Y + + I LK+++ E I+GPSGSGK+ +L+I+ +P G +
Sbjct: 8 TKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-----TEGEV 62
Query: 93 EINETRLQD------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE 146
I+ + D ++ R + ++ Q L LLT E++ + K S + +
Sbjct: 63 YIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122
Query: 147 SKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
+ + N LSGGQ++R++IA L +NP II D+PT LD
Sbjct: 123 KRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGE 182
Query: 206 NLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+++LL+ + + G ++ H ++ + + L +G + +
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKL 229
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 123 bits (310), Expect = 2e-32
Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 19/221 (8%)
Query: 45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN---ETRLQD 101
L +S ++++I+GP+GSGK+ L++++ G+ + + G + T +
Sbjct: 19 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-----DEGRVYFENKDITNKEP 73
Query: 102 HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY----------SRKAKESKVDS 151
+ Q + +TV E+L + + + K
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 133
Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
I + L +S + LSGGQ K + I L++NP +I +DEP G+ A ++ +
Sbjct: 134 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 193
Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
++ +G + H+ +LN D+LYV+ G +G
Sbjct: 194 LELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGR 233
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 121 bits (305), Expect = 8e-32
Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 12/219 (5%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
+ + + ++ E V+LGPSG GKT L ++AG P G I +
Sbjct: 13 TKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-----TEGRIYFGD 67
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
+ + + Q + +TV E++ +K ++ + + +V A+ L
Sbjct: 68 RDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELL 124
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
I N LSGGQ++R+++A ++ P ++ +DEP + LD + ++ +
Sbjct: 125 QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 217 QG--TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+ T I T Q A + M D + V+ G G+
Sbjct: 185 KLKVTTIYVTHDQVEA--MTMGDRIAVMNRGQLLQIGSP 221
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 121 bits (304), Expect = 1e-31
Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 8/220 (3%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
T +Y + L++I+ + + ++G SGSGK+ + ++ + + ++
Sbjct: 20 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 79
Query: 95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
E L LR + + Q+ L Q A+ + +
Sbjct: 80 REYTLAS---LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN 136
Query: 155 SLS--ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
+ + T LSGGQ++R++IA LL + I+ LDE T+ LD + + L
Sbjct: 137 KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 196
Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
++ T ++ H+ S + AD + V+ +G +GT
Sbjct: 197 ELQKNRTSLVIA-HRLST--IEQADEIVVVEDGIIVERGT 233
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 113 bits (285), Expect = 3e-29
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 12/219 (5%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN- 95
I K+ILK IS E+ ++GP+G+GKT L I++ +P +SG + +
Sbjct: 9 RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-----SSGIVTVFG 63
Query: 96 ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
+ +++ +RK Y+ ++ + E L A S E V+ +
Sbjct: 64 KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEI 120
Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
+ S G ++L IA L+ NP + LDEPT+GLD LNA + K+L+ +
Sbjct: 121 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180
Query: 216 HQG-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+G T+++ + + + D + ++ G GTV
Sbjct: 181 QEGLTILVSSHNMLEV--EFLCDRIALIHNGTIVETGTV 217
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 114 bits (286), Expect = 5e-29
Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 39/248 (15%)
Query: 12 KKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTK 71
+ + + + ++S+S L +LK+I+ E+ I G +GSGKT
Sbjct: 25 QSNGDRKHSSDENNVSFSHLCLV-------GNPVLKNINLNIEKGEMLAITGSTGSGKTS 77
Query: 72 LLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVA 131
LL ++ G + G I+ R+ + Q + + T+
Sbjct: 78 LLMLILGELEA-----SEGIIKH------SGRV-----SFCSQFSWIM-------PGTIK 114
Query: 132 AHLKLGNQYSRKAKESKVDSIADSLSIS-------TCKNTLTKHLSGGQKKRLSIALELL 184
++ G Y +S V + I+ T LSGGQ+ R+S+A +
Sbjct: 115 ENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 174
Query: 185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244
+ + LD P LD + + I + L AD + +L +
Sbjct: 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH--LRKADKILILHQ 232
Query: 245 GYCTYQGT 252
G + GT
Sbjct: 233 GSSYFYGT 240
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 112 bits (282), Expect = 7e-29
Identities = 54/242 (22%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 35 THSYSIKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
T + ++ I L ++S + ++ ++G SG+GK+ L+ + RP G +
Sbjct: 8 TKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----TEGSV 62
Query: 93 EINETRL-----QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES 147
++ L + R++ I Q L TV ++ + L + +
Sbjct: 63 LVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKR 119
Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
+V + + + ++ +LSGGQK+R++IA L SNP ++ DE T+ LD ++
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 208 VKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV-----PYLS 261
++LL+D+ G I+ H+ + + D + V++ G Q TV + P
Sbjct: 180 LELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 238
Query: 262 DF 263
F
Sbjct: 239 KF 240
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 111 bits (278), Expect = 1e-28
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 20/201 (9%)
Query: 43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
K +L+ I+ + GP+G GKT LL ++ Y +P K E I N
Sbjct: 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE-----IIYNG---VPI 65
Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
++ + ++ ++ ++ ++VE+ L A L Y K ++++ +S+ + K
Sbjct: 66 TKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLK 120
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMI 221
L LS G +R+ +A LL N I LD+P +D + ++K + ++ + G +I
Sbjct: 121 KKL-GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 222 ICTLHQPSASLLNMADYLYVL 242
I + + L+ D L
Sbjct: 180 ISSREE-----LSYCDVNENL 195
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 110 bits (277), Expect = 4e-28
Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 21/234 (8%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
F++I + Y S IL +I+ E+ I+G SGSGK+ L ++ + P
Sbjct: 4 FRNIRFR--------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 55
Query: 83 KKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
+ + + I+ L D LR++ ++QDN+L ++ +++++A +
Sbjct: 56 ENGQ-----VLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKV 109
Query: 141 SRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
AK + L +T LSGGQ++R++IA L++NP I+ DE T+
Sbjct: 110 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 169
Query: 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
LDY + +++ + + T+II H+ S + AD + V+ +G QG
Sbjct: 170 LDYESEHVIMRNMHKICKGRTVIIIA-HRLST--VKNADRIIVMEKGKIVEQGK 220
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 109 bits (273), Expect = 1e-27
Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 10/218 (4%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
+ + + KDI+ E V +GPSG GK+ LL ++AG + + I E
Sbjct: 7 TKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD-----LFIGE 61
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
R+ D + + Q L L+V E+++ L ++ +V+ +A+ L
Sbjct: 62 KRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVL 118
Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
++ + K LSGGQ++R++I L++ PS+ LDEP + LD + + +
Sbjct: 119 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178
Query: 217 Q-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+ G +I H + +AD + VL G G
Sbjct: 179 RLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKP 215
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 108 bits (270), Expect = 4e-27
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 8/217 (3%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
+ +K I ++ ++G +G+GKT L +AG R +K + +I
Sbjct: 13 HVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT- 71
Query: 97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
H + R + + + LTV E+L + A+ + ++ + ++ I
Sbjct: 72 -NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLF 126
Query: 157 S-ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
+ L LSGG+++ L+I L+S P ++ +DEP+ GL + + + ++++ +
Sbjct: 127 PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
+GT I+ L +A Y YVL G +G
Sbjct: 187 QEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGK 222
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 108 bits (270), Expect = 4e-27
Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 21/234 (8%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
+ + ++ YD S+ IL+DIS + GPSG GK+ + +L + +P
Sbjct: 4 ARHVDFA---YD------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP 54
Query: 83 KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
+G I I+ + + + R + ++ QD+ + E
Sbjct: 55 -----TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDL 109
Query: 141 SRKAKESKVDSIADS--LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
+ + S ++ ++T +SGGQ++RL+IA L NP I+ LDE T
Sbjct: 110 WQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
LD + + + K L + T ++ H+ S + AD +Y + +G T G
Sbjct: 170 LDSESESMVQKALDSLMKGRTTLVIA-HRLST--IVDADKIYFIEKGQITGSGK 220
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 107 bits (268), Expect = 1e-26
Identities = 52/233 (22%), Positives = 98/233 (42%), Gaps = 24/233 (10%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
++LK +S + ++ I+G SGSGK+ L + +P + G I +N
Sbjct: 9 HKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----SEGAIIVNG 63
Query: 97 TRL---------------QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS 141
+ R+LR + Q L +TV E++ A LG S
Sbjct: 64 QNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LS 121
Query: 142 RKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
+ + + I + HLSGGQ++R+SIA L P ++ DEPT+ LD
Sbjct: 122 KHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 181
Query: 201 YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
++++++ +A +G ++ H+ +++ ++ L +G +G
Sbjct: 182 PELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDP 233
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 105 bits (262), Expect = 3e-26
Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 24/223 (10%)
Query: 40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99
+ L +SG + E+ ++GP+G+GK+ LL +AG G I+ L
Sbjct: 9 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG------KGSIQFAGQPL 62
Query: 100 QDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
+ L Y+ Q V LT+ H K + ++ +A +L+
Sbjct: 63 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALA 114
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLS-------NPSIIFLDEPTTGLDYLNATNLVKL 210
+ T LSGG+ +R+ +A +L ++ LDEP LD + L K+
Sbjct: 115 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 174
Query: 211 LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
L + QG I+ + H + L A ++L G G
Sbjct: 175 LSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRR 216
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 103 bits (259), Expect = 1e-25
Identities = 48/236 (20%), Positives = 100/236 (42%), Gaps = 21/236 (8%)
Query: 23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
FQD+S++ Y +L+ ++ E++ ++GP+GSGK+ + +L +P
Sbjct: 14 FQDVSFA---YPNR----PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66
Query: 83 KKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
+ + ++ L + R L ++ + Q+ + E +
Sbjct: 67 TGGQ-----LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEI 121
Query: 141 SRKAKESKVDSIADSLS--ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
+ A +S S L T + LSGGQ++ +++A L+ P ++ LD+ T+
Sbjct: 122 TAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSA 181
Query: 199 LDYLNATNLVKLLRDMAHQG--TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
LD + + +LL + + ++++ T S + AD++ L G GT
Sbjct: 182 LDANSQLQVEQLLYESPERYSRSVLLIT-QHLSL--VEQADHILFLEGGAIREGGT 234
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 100 bits (249), Expect = 2e-24
Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 6/219 (2%)
Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
++++S E ++LGPSG GKT L ++AG P + + G + +
Sbjct: 10 WKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69
Query: 97 -TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
+ ++ + Q L +TV +++ L+ + R+ + +V +A+
Sbjct: 70 PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAEL 126
Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
L ++ N + LSGGQ++R+++ ++ P + +DEP + LD + L+ +
Sbjct: 127 LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 216 HQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
Q G I H + M D + V+ G G+
Sbjct: 187 RQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSP 224
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 96.3 bits (239), Expect = 4e-23
Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 5/220 (2%)
Query: 35 THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
+ + L +++ + E ILGPSG+GKT + I+AG P E +
Sbjct: 10 SKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69
Query: 95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
++ + Q L LT E++ + S++ +V+ +A
Sbjct: 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAK 126
Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
L I N + LSG Q++R+++A L+ +PS++ LDEP + LD + L++++
Sbjct: 127 ILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186
Query: 215 AHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
+ G ++ H P A + +AD + VL +G G
Sbjct: 187 QSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 92.4 bits (229), Expect = 8e-22
Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
L ++S S E VILGP+G+GKT L+++AG+ P I ++ + D
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR-----ILLDGKDVTDLSPE 70
Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
+ + ++ Q+ L + V+++L +K + +V A L I +
Sbjct: 71 KHDIAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICT 224
LSGG+++R+++A L++NP I+ LDEP + LD N ++L + + ++
Sbjct: 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
Query: 225 LHQPSASLLNMADYLYVLTEGYCTYQGTV 253
H + MAD + V+ +G G
Sbjct: 185 THDQT-EARIMADRIAVVMDGKLIQVGKP 212
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 90.8 bits (225), Expect = 3e-21
Identities = 47/201 (23%), Positives = 96/201 (47%), Gaps = 12/201 (5%)
Query: 54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
+ ++ V+LGP+G+GK+ L+++AG +P + G + +N + R+ ++
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKP-----DRGEVRLNGADITPLPPERRGIGFVP 76
Query: 114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173
QD L L+V ++ R ++ +V +A+ L I+ + LSGG+
Sbjct: 77 QDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGE 131
Query: 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASL 232
++R+++A L+ P ++ LDEP + +D L++ LR + + I+ H
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EA 190
Query: 233 LNMADYLYVLTEGYCTYQGTV 253
+AD + V+ G +G +
Sbjct: 191 AMLADEVAVMLNGRIVEKGKL 211
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 59.9 bits (143), Expect = 3e-10
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
G RL+++L L S++ LDEPT LD L+ ++ + +I H
Sbjct: 288 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--E 345
Query: 232 LLNMADYLYVLT 243
L + AD++ ++
Sbjct: 346 LKDAADHVIRIS 357
Score = 30.6 bits (67), Expect = 0.50
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 55 SKELSVILGPSGSGKTKLLDIL 76
+ +++I+G +GSGK+ LLD +
Sbjct: 22 KEGINLIIGQNGSGKSSLLDAI 43
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 55.9 bits (133), Expect = 4e-09
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD 237
+++L L S++ LDEPT LD L+ ++ + +I H L + AD
Sbjct: 217 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 274
Query: 238 YLYVLT 243
++ ++
Sbjct: 275 HVIRIS 280
Score = 33.2 bits (74), Expect = 0.068
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
D V + +++I+G +GSGK+ LLD +
Sbjct: 14 HSDTV-VEFKEGINLIIGQNGSGKSSLLDAILV 45
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 53.5 bits (127), Expect = 7e-09
Identities = 17/187 (9%), Positives = 39/187 (20%), Gaps = 36/187 (19%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR-LQDHRMLRKESCYIMQDNLL 118
+I G G GKT L+ + + + E R + + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR-----AIGFWTEEVRDPETKKRTGFRIITTEGKKKI 58
Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178
V ++ N +
Sbjct: 59 FSSKFFTSKKLVGSY---------------------------GVNVQYFEELAIPILERA 91
Query: 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADY 238
+I +DE + + + + M ++ T+ +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELF-SKKFRDLVRQIMHDPNVNVVATIPIRDV--HPLVKE 148
Query: 239 LYVLTEG 245
+ L
Sbjct: 149 IRRLPGA 155
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 54.0 bits (128), Expect = 3e-08
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 167 KHLSGGQKKRLSIALEL----LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
++LSGG+K ++AL LDE LD N + +R + I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 223 CTLHQPSASLLNMADYLYVLT 243
+ ++ +D L +
Sbjct: 391 VISLKN--TMFEKSDALVGVY 409
Score = 30.8 bits (68), Expect = 0.51
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 53 FVSKELSVILGPSGSGKTKLLD 74
F + I+GP+GSGK+ ++D
Sbjct: 22 FGESNFTSIIGPNGSGKSNMMD 43
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.2 bits (69), Expect = 0.22
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
++LG +GKT +L G + T I+ E R + ++
Sbjct: 6 LMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSY 62
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.4 bits (67), Expect = 0.37
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTET---NSGYIEINETRLQDHRMLRKESCYIMQDN 116
+ LG +GKT LL +L R T S + I + + + +
Sbjct: 4 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 63
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.7 bits (68), Expect = 0.38
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 10/59 (16%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKT----------ETNSGYIEINETRLQDHRMLRKE 108
V +G +GSGKT L Y + I+ + +E
Sbjct: 4 VFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 30.3 bits (67), Expect = 0.41
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 60 VILGPSGSGKTKLLDILA 77
V+ GPSG+GK+ LL L
Sbjct: 4 VLSGPSGAGKSTLLKKLF 21
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 30.8 bits (68), Expect = 0.43
Identities = 9/95 (9%), Positives = 27/95 (28%)
Query: 46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
+ D + E+ ++ SG GK+ + A + + ++
Sbjct: 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLI 84
Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
+ ++ + + +E +L
Sbjct: 85 GLHNRVRLRQSDSLKREIIENGKFDQWFDELFGND 119
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 30.6 bits (68), Expect = 0.45
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ-DHRMLRKESCYIMQD 115
+++G G GK+ ++ + G R + S L + +
Sbjct: 36 LVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 30.3 bits (67), Expect = 0.45
Identities = 12/55 (21%), Positives = 22/55 (40%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQ 114
++LG +GKT LL LA T T I+ +++ + ++
Sbjct: 20 LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 30.1 bits (66), Expect = 0.48
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 55 SKELS-VILGPSGSGKTKLLDILAGYRRPKKTE 86
++E+ +ILG G+GKT +L L
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIP 35
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 29.9 bits (66), Expect = 0.50
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 49 ISGVFVSKELS-VILGPSGSGKTKLL 73
+S +F +KE+ ++LG +GKT +L
Sbjct: 4 LSKIFGNKEMRILMLGLDAAGKTTIL 29
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 30.0 bits (66), Expect = 0.58
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95
+I GP SGKT LL +L + +
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD 42
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 30.0 bits (66), Expect = 0.63
Identities = 17/166 (10%), Positives = 44/166 (26%), Gaps = 4/166 (2%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120
+ GP G GKT L+ + + + Y E + +
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFD---VVTLSGTRGPLS 62
Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180
+ +E + E + + S+ + K L
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122
Query: 181 LELLSNPSIIFLDEPT-TGLDYLNATNLVKLLRDMAHQGTMIICTL 225
L + + + G + + L+ ++ ++ + + +
Sbjct: 123 LFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNV 168
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 30.4 bits (67), Expect = 0.63
Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 6/128 (4%)
Query: 53 FVSKELSVILGPSGSGKTKL-LDI---LAGYRRPKKTETNSGYIEINETRLQDHRMLRKE 108
V+ + ++ P G+GK+ L L + +AG + I +
Sbjct: 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHR 85
Query: 109 SCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH 168
+ +E V + L + +G+ + A E + +
Sbjct: 86 LHALGAHLSAEERQAVADGLLIQPL--IGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRR 143
Query: 169 LSGGQKKR 176
++
Sbjct: 144 FHIEEENA 151
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 29.6 bits (65), Expect = 0.68
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 45 ILKDISGVFVSKELS-VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
+ I +F +E +I+G +GKT +L + + T +E
Sbjct: 3 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE 53
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 30.3 bits (67), Expect = 0.70
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 55 SKELSVILGPSGSGKTKLLD--ILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYI 112
SK + I+G +GSGK+ + D + K S ++ ++ + I
Sbjct: 25 SKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAI 84
Query: 113 MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV 149
+N + E+ + + + + S +
Sbjct: 85 YFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRA 121
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 30.1 bits (66), Expect = 0.71
Identities = 25/198 (12%), Positives = 49/198 (24%), Gaps = 14/198 (7%)
Query: 49 ISGVFVSKELSVILGPSGSGKTKL-LDILAGYRRPKKTETNSGYIEINETRLQDHRMLRK 107
+ G S+ ++ G GSGKT++ + P+ + + E +
Sbjct: 27 LGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDT 86
Query: 108 ESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
E T + G + V +S +
Sbjct: 87 EG-------------TFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIED 133
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQ 227
+ G +L + L S + + L +A ++ +Q
Sbjct: 134 LIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 193
Query: 228 PSASLLNMADYLYVLTEG 245
SA G
Sbjct: 194 VSAKPDAFFGMAEQAIGG 211
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 29.5 bits (65), Expect = 0.76
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 60 VILGPSGSGKTKLLDILA 77
VI GPSG+GK+ LL L
Sbjct: 5 VISGPSGTGKSTLLKKLF 22
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 29.6 bits (65), Expect = 0.82
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQ 114
K+L +I GP+G GK+ LA + + + +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWK 60
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 29.2 bits (64), Expect = 0.95
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 60 VILGPSGSGKTKLLDILA 77
V+ GPS GK+ ++ L
Sbjct: 6 VLSGPSAVGKSTVVRCLR 23
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 29.2 bits (64), Expect = 1.0
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 55 SKELSVILGPSGSGKTKLLDIL 76
+ ++ + G +G+GK+ +
Sbjct: 23 DELVTTLSGGNGAGKSTTMAAF 44
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 29.1 bits (64), Expect = 1.0
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 48 DISGVFVSKELSVILGPSGSGKTKLLDILA 77
D+ G + ++ G GSGK+ + + LA
Sbjct: 1 DLGGNIL-----LLSGHPGSGKSTIAEALA 25
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 29.1 bits (64), Expect = 1.1
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 56 KELSVILGPSGSGKTKLLDILA 77
++ V+LG G G+ + + L
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLI 24
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.8 bits (63), Expect = 1.2
Identities = 9/56 (16%), Positives = 14/56 (25%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD 115
SG+GKT LL L + ++ + E
Sbjct: 6 AFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAA 61
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 28.8 bits (63), Expect = 1.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 60 VILGPSGSGKTKLLDILA 77
V++G SGSGK+ + +A
Sbjct: 10 VLMGVSGSGKSAVASEVA 27
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 29.0 bits (64), Expect = 1.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 58 LSVILGPSGSGKTKLLDIL 76
L ++ PSG+GK+ L+ L
Sbjct: 4 LYIVSAPSGAGKSSLIQAL 22
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 29.7 bits (66), Expect = 1.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 60 VILGPSGSGKTKLLDILAGY 79
+++GP+G GKT++ LA
Sbjct: 53 LMIGPTGVGKTEIARRLAKL 72
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.9 bits (63), Expect = 1.3
Identities = 10/57 (17%), Positives = 18/57 (31%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
++LG G GK+ L I G + E + + + L +
Sbjct: 5 LLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 29.2 bits (64), Expect = 1.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 55 SKELSVILGPSGSGKTKLLDILA 77
S ++ I+GP+GSGK+ ++D +
Sbjct: 23 SDRVTAIVGPNGSGKSNIIDAIK 45
>d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 141
Score = 28.2 bits (63), Expect = 1.4
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 8 LQDLKKSPRKHFNLLFQDIS--YSALYYDTHSYSIKSKDILKDISGV 52
L++++KS HF +LF+D S + ALY + S +++++ + ++G
Sbjct: 45 LEEIEKSKANHFLILFRDSSCQFRALY----TLSGETEELSR-LAGY 86
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 28.3 bits (62), Expect = 1.6
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQ 114
++G SGKT L++ + G ++ + + R +S +
Sbjct: 6 VVGYKHSGKTTLMEKWV--AAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHER 57
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 28.4 bits (62), Expect = 1.7
Identities = 9/57 (15%), Positives = 16/57 (28%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
V++G GKT LL + P + + Q++
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.4 bits (62), Expect = 1.8
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 60 VILGPSGSGKTKLLDILAGY 79
++ G G GK+ +L +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEI 24
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.7 bits (63), Expect = 1.9
Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 14/181 (7%)
Query: 49 ISGVFVSKELSVILGPSGSGKTKL-LDILAGYRRPKKTETNSGYIEINETRLQDHRMLRK 107
G F + + G +G+GKT L + K+ Y E L++
Sbjct: 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGM 78
Query: 108 ESCYIMQDNLLQELLTVEESLTVAAHLK--LGNQYSRKAKESKVDSIADSLS------IS 159
+ + + NLL+ + ES + HL+ K +DS++
Sbjct: 79 DFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFR 138
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT 219
+T + K+ I + T T+ + LL+ + +G
Sbjct: 139 QFVIGVTGYA-----KQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGE 193
Query: 220 M 220
M
Sbjct: 194 M 194
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 28.4 bits (62), Expect = 2.0
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 60 VILGPSGSGKTKLLDILA 77
+I G G+GKT + +++A
Sbjct: 9 LITGTPGTGKTSMAEMIA 26
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 28.6 bits (62), Expect = 2.0
Identities = 7/54 (12%), Positives = 19/54 (35%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
+ G S GK+ ++ L + +T + G + + + + +
Sbjct: 27 ALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYG 80
>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Human parvovirus B19 [TaxId: 10798]}
Length = 536
Score = 28.7 bits (64), Expect = 2.2
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 402 FTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQL 446
+ I+T + F++ R+ RW Y +P L
Sbjct: 460 LVQYAVGIMTVTMTFKLGPRKATGRWNPQPGVYPPHAAGHLPYVL 504
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 28.1 bits (61), Expect = 2.3
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 56 KELSV-ILGPSGSGKTKLLDILAGYRRPKKTET 87
+E+ + ++G SGKT ++++A + +
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIP 33
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 27.7 bits (60), Expect = 2.4
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
+++G +GKT +L L T +E
Sbjct: 4 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET 38
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 28.1 bits (61), Expect = 2.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 60 VILGPSGSGKTKLLDILAGY 79
ILG SGK+ L++ LA
Sbjct: 11 AILGGESSGKSVLVNKLAAV 30
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 27.8 bits (60), Expect = 2.8
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
I+G GK+ LL+ L G + + + L + R
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRR 53
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 27.7 bits (60), Expect = 2.8
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 55 SKELSVILGPSGSGKTKLLDILA 77
+ + ++ G S +GK+ ++ L
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQ 24
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 27.6 bits (60), Expect = 2.9
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
+ILG G+GKT +L L T +E +
Sbjct: 21 LILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 59
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.7 bits (60), Expect = 2.9
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
VI+G GKT LL + + + P+
Sbjct: 6 VIVGDGACGKTCLLIVNSKDQFPEVYVPTVF 36
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 28.3 bits (62), Expect = 3.1
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
I G G GK+ +D L + ++ + TR
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGS 97
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 27.6 bits (60), Expect = 3.2
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 60 VILGPSGSGKTKLLDILA---------GYRRPKKTETNSGYIEINETRLQDHRMLRKESC 110
++ G G GKT L LA ++ + GY E + + D + E
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELD 67
Query: 111 YIMQDN 116
M++
Sbjct: 68 NQMREG 73
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 27.6 bits (60), Expect = 3.2
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 60 VILGPSGSGKTKLLDILAGY 79
V+ G G G T +
Sbjct: 5 VVTGVPGVGSTTSSQLAMDN 24
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.5 bits (60), Expect = 3.3
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQ 114
+ E+ V +G G+GK+ + ++GY+ +N L + ++
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHL---------VSAGYVHVNRDTLGSWQRCVSSCQAALR 63
Query: 115 DNL 117
Sbjct: 64 QGK 66
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 27.4 bits (59), Expect = 3.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 56 KELSVILGPSGSGKT 70
K++ + +G GSGK+
Sbjct: 2 KKIILTIGCPGSGKS 16
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.6 bits (61), Expect = 3.5
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 20/87 (22%)
Query: 60 VILGPSGSGKTKLLDIL--AGYR----------------RPKKTETNSGYIEINETRLQD 101
++ G SG GK++ L + + E ++EI + +
Sbjct: 19 LLTGRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLFGRAQEVAKKFMEIRGLGIIN 78
Query: 102 HRMLRKESCYI--MQDNLLQELLTVEE 126
+ L+ LL++E+
Sbjct: 79 VERFYGLQITKQRTEIQLMVNLLSLEK 105
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 27.4 bits (59), Expect = 3.5
Identities = 9/54 (16%), Positives = 21/54 (38%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
++GP G+GK+ + LA + +++ + + L E +
Sbjct: 6 FLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRD 59
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 27.4 bits (59), Expect = 3.6
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTET---NSGYIEINETRLQDHRMLRKESCYIMQDN 116
V LG +GKT LL +L R + T S + I + + N
Sbjct: 17 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKN 76
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.7 bits (60), Expect = 3.7
Identities = 9/57 (15%), Positives = 16/57 (28%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
V++G GKT LL P + + + Q++
Sbjct: 9 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.4 bits (59), Expect = 3.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 60 VILGPSGSGKTKLLDILAGYRR 81
VI G +GK+ LL+ LAG
Sbjct: 5 VIAGRPNAGKSSLLNALAGREA 26
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 27.6 bits (60), Expect = 4.3
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 63 GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122
GP G GKT L I+A + T SG + + + + + + D + +
Sbjct: 42 GPPGLGKTTLAHIIASELQTNIHVT-SGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK 100
Query: 123 TVEESL 128
VEE L
Sbjct: 101 AVEELL 106
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.1 bits (59), Expect = 4.3
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYI 112
V++G SG GK+ LL ++++ G + D + ++ +
Sbjct: 8 VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 27.4 bits (60), Expect = 4.5
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 54 VSKELSVIL--GPSGSGKTKLLDILAGYRRPKK 84
V K+ ++ G GSGKT LA Y + K
Sbjct: 6 VLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKG 38
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 27.3 bits (59), Expect = 4.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 60 VILGPSGSGKTKLLDILAG 78
+ +G SGKT L L
Sbjct: 4 LFVGLCDSGKTLLFVRLLT 22
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.4 bits (59), Expect = 4.6
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 55 SKELSVILGPSGSGKTKLLDILA 77
++++LG +GK+ ++ I
Sbjct: 28 RAPITLVLGLRRTGKSSIIKIGI 50
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 26.9 bits (58), Expect = 5.1
Identities = 11/57 (19%), Positives = 19/57 (33%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
V++G GKT LL A P++ + + L Q++
Sbjct: 13 VVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.1 bits (58), Expect = 5.4
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
G S +GK+ L+ L + +T G ++
Sbjct: 20 AFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK 64
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.9 bits (58), Expect = 5.4
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
VI+G GK+ LL+ L R T+ ++ + +
Sbjct: 4 VIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI 48
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.0 bits (58), Expect = 5.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 61 ILGPSGSGKTKLLDILA 77
I G S SGKT L + L+
Sbjct: 27 IDGLSRSGKTTLANQLS 43
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 5.5
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 40 IKSKDILKDISGVFVSKELS----VILGPSGSGKTKLLDILA 77
+ K ++GV + ++ ++ G +G+GK+ LL LA
Sbjct: 30 TREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELA 71
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.9 bits (58), Expect = 5.7
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
V+LG + GK+ ++ + E G + + + ++ E
Sbjct: 7 VLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 26.6 bits (57), Expect = 6.2
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 60 VILGPSGSGKTKLLDILAGYRR 81
+I+G GK+ L + L ++
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKK 25
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 27.1 bits (58), Expect = 6.4
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 49 ISGVFVSKELSVILGPSGSGKTKLLDILA 77
+ G + ++ + G +GKT++ LA
Sbjct: 16 LQGGIETGSITEMFGEFRTGKTQICHTLA 44
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 26.6 bits (57), Expect = 6.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGY 91
+ILG SG GKT L+ + ++ + G
Sbjct: 6 IILGDSGVGKTSLMHRYVNDKYSQQYKATIGA 37
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 26.6 bits (57), Expect = 6.5
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYI 112
+ILG SG GKT L++ + + + G + + + D R++ +
Sbjct: 6 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 58
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 26.9 bits (58), Expect = 6.5
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119
++ G GSGKT L + ET I I+ + E + + ++++
Sbjct: 36 LLGGQPGSGKTSLRSAIFE-------ETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVK 88
Query: 120 E 120
Sbjct: 89 H 89
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 26.6 bits (57), Expect = 7.2
Identities = 7/56 (12%), Positives = 15/56 (26%)
Query: 61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
I G G L+ L+ Y ++ + + +L +
Sbjct: 29 IQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 26.9 bits (59), Expect = 7.7
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR 103
D LK + K + GP SGKT L L + +N + +
Sbjct: 142 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE-------LCGGKALNVNLPLDRLNF 194
Query: 104 MLRK--ESCYIMQDNLLQELLTVEESLTVA 131
L + ++ +++ + +
Sbjct: 195 ELGVAIDQFLVVFEDVKGTGGESRDLPSGQ 224
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 26.3 bits (56), Expect = 8.1
Identities = 12/54 (22%), Positives = 19/54 (35%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
V++G G GK+ L +I AG ++ + E L M
Sbjct: 7 VLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 26.5 bits (57), Expect = 8.2
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 56 KELS-VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQ 114
+E+ ++LG SGK+ ++ ++ K I ET + K Q
Sbjct: 1 REVKLLLLGAGESGKSTIV------KQMKIIHEAG--TGIVETHFTFKDLHFKMFDVGGQ 52
Query: 115 DN 116
+
Sbjct: 53 RS 54
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 26.4 bits (57), Expect = 8.5
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119
+ LG SG GKT L + K T G + + + + S + +L
Sbjct: 9 LALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQL 68
Query: 120 E 120
Sbjct: 69 W 69
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.6 bits (58), Expect = 8.7
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 41 KSKDILKDISG--VFVSKELSVILGPSGSGKTKLLDILAGYR 80
++ IL I+ V V+ I+G +GK+ L++ LAG +
Sbjct: 20 EALKILSAITQPMVVVA-----IVGLYRTGKSYLMNKLAGKK 56
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 26.5 bits (58), Expect = 9.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 57 ELSVILGPSGSGKTKL 72
+++V G SG+GKT L
Sbjct: 15 DVAVFFGLSGTGKTTL 30
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.1 bits (56), Expect = 9.4
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCY 111
V++G GSGK+ + LA +T+ + + D E +
Sbjct: 5 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEF 56
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 26.1 bits (56), Expect = 10.0
Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 7/61 (11%)
Query: 60 VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119
++G G G T + LA +++ + M + +
Sbjct: 6 FMVGARGCGMTTVGRELA-------RALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFR 58
Query: 120 E 120
Sbjct: 59 R 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.409
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,195,877
Number of extensions: 102036
Number of successful extensions: 530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 140
Length of query: 612
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 521
Effective length of database: 1,158,166
Effective search space: 603404486
Effective search space used: 603404486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.1 bits)