BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12626
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R8U|A Chain A, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1)
Containing The N-Terminal Domain At 1.35 A Resolution
pdb|2R8U|B Chain B, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1)
Containing The N-Terminal Domain At 1.35 A Resolution
Length = 268
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 132/197 (67%), Gaps = 6/197 (3%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
+K+VKF+ LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD
Sbjct: 58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117
Query: 61 NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTXXXXXXXXXXXXXXXKSTAAAPRA 120
N DYDPV AR G+ S+ A ++K + TAAAP+A
Sbjct: 118 NYDGKDYDPVAARQGQE--TAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKA 175
Query: 121 GLN-SRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
G R P V N EL Q+ LKLTV+ LEKERDFYFGKLR+IE++CQE+EG
Sbjct: 176 GPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEG 233
Query: 180 ET-PVIQNILNILYATE 195
E PV+Q I++ILYAT+
Sbjct: 234 ENDPVLQRIVDILYATD 250
>pdb|1VKA|A Chain A, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
pdb|1VKA|B Chain B, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
Length = 153
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 65/76 (85%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
+K+VKF+ LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD
Sbjct: 71 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 130
Query: 61 NNTVADYDPVGARGGE 76
N DYDPV AR G+
Sbjct: 131 NYDGKDYDPVAARQGQ 146
>pdb|1PA7|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
pdb|1UEG|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
Length = 130
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 63/73 (86%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
+K+VKF+ LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD
Sbjct: 58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117
Query: 61 NNTVADYDPVGAR 73
N DYDPV AR
Sbjct: 118 NYDGKDYDPVAAR 130
>pdb|2QJZ|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
pdb|2QJZ|B Chain B, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 123
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 64/76 (84%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
+K+VKF+ LEHEYIQNFKILQA FK+ VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD
Sbjct: 48 LKKVKFQAKLEHEYIQNFKILQAGFKRXGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 107
Query: 61 NNTVADYDPVGARGGE 76
N DYDPV AR G+
Sbjct: 108 NYDGKDYDPVAARQGQ 123
>pdb|1WYO|A Chain A, Solution Structure Of The Ch Domain Of Human Microtubule-
Associated Protein RpEB FAMILY MEMBER 3
Length = 159
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 65/76 (85%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
+++VKF+ LEHEYI NFK+LQAAFKKM VDKI+P++KLVKG+FQDNFEF+QWFKKFFD
Sbjct: 65 LRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDA 124
Query: 61 NNTVADYDPVGARGGE 76
N DY+P+ AR G+
Sbjct: 125 NYDGKDYNPLLARQGQ 140
>pdb|3CO1|A Chain A, Crystal Structure Of Microtubule Binding Domain Of Human
Eb3
Length = 132
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
+++VKF+ LEHEYI NFK+LQAAFKKM VDKI+P++KLVKG+FQDNFEF+QWFKKFFD
Sbjct: 60 LRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDA 119
Query: 61 NNTVADYDPVGAR 73
N DY+P+ AR
Sbjct: 120 NYDGKDYNPLLAR 132
>pdb|1V5K|A Chain A, Solution Structure Of The Ch Domain From Mouse Eb-1
Length = 115
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 55/59 (93%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFD 59
+K+VKF+ LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD
Sbjct: 51 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFD 109
>pdb|3TQ7|B Chain B, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
Length = 82
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Query: 137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE-TPVIQNILNILYATE 195
+++ ELN Q++DLKLTVDGLEKERDFYF KLRDIE++CQEHE E +PVI I+ ILYATE
Sbjct: 1 AQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATE 60
>pdb|1YIB|A Chain A, Crystal Structure Of The Human Eb1 C-terminal Dimerization
Domain
Length = 76
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 126 GTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVI 184
G V N EL Q+ LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE PV+
Sbjct: 1 GPLGSGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVL 60
Query: 185 QNILNILYATE 195
Q I++ILYAT+
Sbjct: 61 QRIVDILYATD 71
>pdb|1YIG|A Chain A, Crystal Structure Of The Human Eb1 C-Terminal Dimerization
Domain
pdb|1YIG|B Chain B, Crystal Structure Of The Human Eb1 C-Terminal Dimerization
Domain
Length = 76
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 126 GTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVI 184
G V N EL Q+ LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE PV+
Sbjct: 1 GPLGSGVGNGDDEAAELXQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVL 60
Query: 185 QNILNILYATE 195
Q I +ILYAT+
Sbjct: 61 QRIXDILYATD 71
>pdb|1TXQ|B Chain B, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
With The Cap-Gly Domain Of P150glued
Length = 86
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 132 VDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNI 190
V N EL Q+ LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE PV+Q I++I
Sbjct: 4 VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDI 63
Query: 191 LYATE 195
LYAT+
Sbjct: 64 LYATD 68
>pdb|4ABO|I Chain I, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 145
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
+K+V F N E++YI N+K+LQ F K +DK+V ++L + + QDN EF+QW K+F+D
Sbjct: 48 LKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQ 107
Query: 61 NNTVADYDPVGARGGEAMGNGSVRSISA 88
DYD + RG N V + SA
Sbjct: 108 YYPGGDYDALARRGNRGPANTRVMNSSA 135
>pdb|3GJO|A Chain A, Crystal Structure Of Human Eb1 In Complex With Microtubule
Tip Localization Signal Peptide Of Macf
pdb|3GJO|B Chain B, Crystal Structure Of Human Eb1 In Complex With Microtubule
Tip Localization Signal Peptide Of Macf
pdb|3GJO|C Chain C, Crystal Structure Of Human Eb1 In Complex With Microtubule
Tip Localization Signal Peptide Of Macf
pdb|3GJO|D Chain D, Crystal Structure Of Human Eb1 In Complex With Microtubule
Tip Localization Signal Peptide Of Macf
Length = 72
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 136 SSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYAT 194
S EL Q+ LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE PV+Q I++ILYAT
Sbjct: 2 SDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYAT 61
Query: 195 E 195
+
Sbjct: 62 D 62
>pdb|1WU9|A Chain A, Crystal Structure Of The C-Terminal Domain Of The End-
Binding Protein 1 (Eb1)
pdb|1WU9|B Chain B, Crystal Structure Of The C-Terminal Domain Of The End-
Binding Protein 1 (Eb1)
pdb|2HKQ|A Chain A, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The Cap-Gly Domain Of Human Dynactin-1
(P150-Glued)
pdb|2HL5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|2HL5|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 80
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 136 SSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYAT 194
S EL Q+ LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE PV+Q I++ILYAT
Sbjct: 2 SDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYAT 61
Query: 195 E 195
+
Sbjct: 62 D 62
>pdb|3TQ7|A Chain A, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
Length = 78
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 48/56 (85%), Gaps = 1/56 (1%)
Query: 141 ELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATE 195
EL Q+ LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE PV+Q I++ILYAT+
Sbjct: 5 ELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATD 60
>pdb|2QJX|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 127
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 3 RVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNN 62
RVKF E+E+ N+KILQ+ F + ++K V +DKL++ +FQDN EFLQW KK + +
Sbjct: 54 RVKFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFLQWLKKHWIRHK 113
Query: 63 TVADYDPVGAR 73
+ YDP R
Sbjct: 114 DESVYDPDARR 124
>pdb|3MUD|C Chain C, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
pdb|3MUD|D Chain D, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
Length = 75
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 36/40 (90%), Gaps = 1/40 (2%)
Query: 157 EKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATE 195
E ++DFYFGKLR+IE++CQE+EGE PV+Q I++ILYAT+
Sbjct: 29 EADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATD 68
>pdb|3MTU|A Chain A, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
pdb|3MTU|B Chain B, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
pdb|3MTU|C Chain C, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
pdb|3MTU|D Chain D, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
Length = 75
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 36/40 (90%), Gaps = 1/40 (2%)
Query: 157 EKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATE 195
E ++DFYFGKLR+IE++CQE+EGE PV+Q I++ILYAT+
Sbjct: 29 EADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATD 68
>pdb|4E61|A Chain A, Crystal Structure Of The Eb1-Like Motif Of Bim1p
pdb|4E61|B Chain B, Crystal Structure Of The Eb1-Like Motif Of Bim1p
Length = 106
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 139 VDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQ 175
+ LN ++ K TV LE ER+FYF KLRDIE+L
Sbjct: 20 IGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVH 56
>pdb|1GPI|A Chain A, Cellobiohydrolase Cel7d (Cbh 58) From Phanerochaete
Chrysosporium. Catalytic Module At 1.32 Ang Resolution
pdb|1H46|X Chain X, The Catalytic Module Of Cel7d From Phanerochaete
Chrysosporium As A Chiral Selector: Structural Studies
Of Its Complex With The B-Blocker (R)-Propranolol
pdb|1Z3T|A Chain A, Structure Of Phanerochaete Chrysosporium Cellobiohydrolase
Cel7d (Cbh58) In Complex With Cellobiose
pdb|1Z3V|A Chain A, Structure Of Phanerochaete Chrysosporium Cellobiohydrolase
Cel7d (Cbh58) In Complex With Lactose
pdb|1Z3W|A Chain A, Structure Of Phanerochaete Chrysosporium Cellobiohydrolase
Cel7d (Cbh58) In Complex With Cellobioimidazole
Length = 431
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 14 YIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGAR 73
YIQN K++Q + N+ + P++ + DNF Q K F N A + +
Sbjct: 299 YIQNGKVIQNSVA--NIPGVDPVNSIT-----DNFCAQQ--KTAFGDTNWFAQKGGL-KQ 348
Query: 74 GGEAMGNGSVRSISATQIH 92
GEA+GNG V ++S H
Sbjct: 349 MGEALGNGMVLALSIWDDH 367
>pdb|4EOT|A Chain A, Crystal Structure Of The Mafa Homodimer Bound To The
Consensus Mare
pdb|4EOT|B Chain B, Crystal Structure Of The Mafa Homodimer Bound To The
Consensus Mare
Length = 95
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 141 ELNSQMMDLKLTVDGLEKERDFY 163
+L SQ+ LKL V L KERD Y
Sbjct: 65 QLQSQVEQLKLEVGRLAKERDLY 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,521,347
Number of Sequences: 62578
Number of extensions: 208752
Number of successful extensions: 448
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 24
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)