Query psy12626
Match_columns 205
No_of_seqs 139 out of 429
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 15:25:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3000|consensus 100.0 1.4E-54 3E-59 384.7 14.5 193 1-197 58-262 (295)
2 COG5217 BIM1 Microtubule-bindi 100.0 8.2E-37 1.8E-41 267.8 3.4 186 1-197 49-273 (342)
3 PF03271 EB1: EB1-like C-termi 99.8 9.8E-21 2.1E-25 124.7 3.8 39 155-193 1-43 (43)
4 COG5217 BIM1 Microtubule-bindi 96.4 0.0043 9.3E-08 55.8 4.4 39 8-46 174-212 (342)
5 cd00014 CH Calponin homology d 93.0 0.18 3.9E-06 37.0 4.4 52 8-59 54-107 (107)
6 PF00307 CH: Calponin homology 93.0 0.14 3E-06 37.6 3.8 50 10-59 57-108 (108)
7 PF11414 Suppressor_APC: Adeno 86.9 2 4.4E-05 32.1 5.4 36 137-172 7-42 (84)
8 KOG1899|consensus 86.2 1.1 2.5E-05 44.7 4.8 39 140-178 177-215 (861)
9 PF01763 Herpes_UL6: Herpesvir 83.1 2 4.4E-05 42.2 5.0 41 139-179 365-405 (557)
10 KOG4196|consensus 66.9 13 0.00029 30.1 4.9 32 138-169 82-113 (135)
11 PF06294 DUF1042: Domain of Un 57.6 7.8 0.00017 31.8 2.1 49 10-58 49-99 (158)
12 PF01166 TSC22: TSC-22/dip/bun 56.7 24 0.00052 24.8 4.1 28 136-163 13-40 (59)
13 PF11577 NEMO: NF-kappa-B esse 52.2 43 0.00094 24.0 5.0 19 155-173 42-60 (68)
14 smart00033 CH Calponin homolog 50.9 23 0.0005 25.2 3.5 46 8-54 54-100 (103)
15 PF09701 Cas_Cmr5: CRISPR-asso 46.4 15 0.00032 28.6 2.0 15 46-60 106-120 (122)
16 PRK09413 IS2 repressor TnpA; R 46.2 35 0.00076 26.3 4.1 24 139-162 73-96 (121)
17 PF04977 DivIC: Septum formati 44.9 42 0.00091 23.2 4.0 28 136-163 23-50 (80)
18 PRK10803 tol-pal system protei 42.5 37 0.0008 30.0 4.1 31 135-165 59-97 (263)
19 PF07716 bZIP_2: Basic region 40.2 54 0.0012 21.8 3.8 23 137-159 32-54 (54)
20 KOG4571|consensus 39.8 50 0.0011 30.1 4.5 31 136-167 254-284 (294)
21 PF10146 zf-C4H2: Zinc finger- 38.1 75 0.0016 27.8 5.3 29 145-173 33-61 (230)
22 PF09789 DUF2353: Uncharacteri 37.2 60 0.0013 29.9 4.7 28 141-168 144-171 (319)
23 PF05667 DUF812: Protein of un 36.0 1E+02 0.0022 30.7 6.4 61 136-196 327-394 (594)
24 PF09006 Surfac_D-trimer: Lung 35.9 1.3E+02 0.0029 20.1 5.0 33 139-175 1-33 (46)
25 PF11569 Homez: Homeodomain le 35.5 26 0.00056 24.4 1.6 41 17-57 9-49 (56)
26 PHA01365 hypothetical protein 35.0 20 0.00043 26.9 1.0 26 19-44 10-37 (91)
27 smart00338 BRLZ basic region l 34.0 1.1E+02 0.0024 20.8 4.7 30 135-164 31-60 (65)
28 KOG4797|consensus 33.6 64 0.0014 25.6 3.7 25 137-161 67-91 (123)
29 PF02020 W2: eIF4-gamma/eIF5/e 32.4 48 0.001 23.9 2.7 30 166-195 7-36 (84)
30 TIGR01881 cas_Cmr5 CRISPR-asso 32.4 33 0.00071 27.3 2.0 50 11-60 65-123 (127)
31 PF15007 CEP44: Centrosomal sp 31.8 45 0.00097 26.9 2.6 41 14-54 2-42 (131)
32 KOG0464|consensus 31.7 24 0.00052 34.4 1.2 13 45-57 322-334 (753)
33 PF07586 HXXSHH: Protein of un 31.2 71 0.0015 28.4 4.1 38 139-176 164-202 (302)
34 PF12308 Noelin-1: Neurogenesi 30.4 1.2E+02 0.0025 23.6 4.6 38 136-175 39-78 (101)
35 PF07407 Seadorna_VP6: Seadorn 29.7 60 0.0013 30.5 3.4 28 133-160 35-62 (420)
36 PF06698 DUF1192: Protein of u 28.6 1.1E+02 0.0023 21.5 3.8 24 138-161 22-45 (59)
37 PF03670 UPF0184: Uncharacteri 27.6 2E+02 0.0043 21.6 5.3 37 134-170 23-59 (83)
38 COG2900 SlyX Uncharacterized p 27.5 1.7E+02 0.0038 21.3 4.8 42 137-178 22-63 (72)
39 PF05008 V-SNARE: Vesicle tran 27.2 92 0.002 21.8 3.4 34 138-171 26-67 (79)
40 PF04728 LPP: Lipoprotein leuc 26.9 1E+02 0.0023 21.4 3.4 23 137-159 3-25 (56)
41 PRK14139 heat shock protein Gr 26.9 2.3E+02 0.005 24.0 6.3 37 137-176 32-68 (185)
42 PF14131 DUF4298: Domain of un 26.8 1E+02 0.0022 22.9 3.7 35 138-172 15-51 (90)
43 smart00515 eIF5C Domain at the 26.0 68 0.0015 22.9 2.6 30 166-195 17-46 (83)
44 PRK14143 heat shock protein Gr 25.7 3.6E+02 0.0078 23.8 7.5 39 136-177 66-104 (238)
45 cd01786 STE50_RA Ubiquitin-lik 25.5 53 0.0012 25.3 1.9 15 18-32 38-52 (98)
46 PF05604 DUF776: Protein of un 25.4 35 0.00076 28.9 1.1 16 19-34 11-26 (178)
47 TIGR02976 phageshock_pspB phag 25.4 1.1E+02 0.0024 22.3 3.5 24 135-158 40-63 (75)
48 PF11336 DUF3138: Protein of u 25.4 1.1E+02 0.0024 29.8 4.4 25 135-159 23-47 (514)
49 PHA03011 hypothetical protein; 25.3 2E+02 0.0044 22.6 5.1 36 138-180 65-100 (120)
50 COG5509 Uncharacterized small 24.9 1.3E+02 0.0027 21.5 3.6 24 138-161 26-49 (65)
51 PRK14163 heat shock protein Gr 24.5 4.7E+02 0.01 22.7 8.0 35 139-176 42-76 (214)
52 PTZ00234 variable surface prot 23.9 4.9E+02 0.011 25.0 8.5 16 45-60 174-189 (433)
53 KOG4787|consensus 23.7 1.6E+02 0.0034 30.0 5.2 46 133-178 328-373 (852)
54 PF07334 IFP_35_N: Interferon- 23.6 1.4E+02 0.0029 22.1 3.7 22 139-160 2-23 (76)
55 COG1382 GimC Prefoldin, chaper 23.3 3.8E+02 0.0083 21.3 7.5 59 137-195 6-67 (119)
56 KOG4674|consensus 22.7 98 0.0021 34.9 4.0 34 135-168 577-610 (1822)
57 COG4238 Murein lipoprotein [Ce 22.2 1.6E+02 0.0036 21.7 3.9 26 136-161 24-49 (78)
58 PHA03386 P10 fibrous body prot 22.1 2.4E+02 0.0051 21.7 4.9 49 138-193 13-61 (94)
59 PF14225 MOR2-PAG1_C: Cell mor 22.0 62 0.0013 28.7 2.0 40 7-46 17-56 (262)
60 KOG4348|consensus 22.0 7.7E+02 0.017 24.3 10.4 40 135-180 567-606 (627)
61 PRK14140 heat shock protein Gr 21.2 3.4E+02 0.0073 23.2 6.2 39 136-177 36-74 (191)
62 KOG4422|consensus 20.8 1E+02 0.0023 30.2 3.3 20 157-178 394-413 (625)
63 PRK14158 heat shock protein Gr 20.8 4.3E+02 0.0094 22.5 6.8 40 136-178 39-78 (194)
64 PRK14162 heat shock protein Gr 20.5 4.3E+02 0.0093 22.6 6.8 36 137-175 39-74 (194)
65 PF11853 DUF3373: Protein of u 20.3 71 0.0015 31.2 2.1 23 136-158 30-52 (489)
66 PF06667 PspB: Phage shock pro 20.2 1.6E+02 0.0035 21.5 3.5 23 136-158 41-63 (75)
No 1
>KOG3000|consensus
Probab=100.00 E-value=1.4e-54 Score=384.70 Aligned_cols=193 Identities=46% Similarity=0.741 Sum_probs=143.6
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCC
Q psy12626 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGN 80 (205)
Q Consensus 1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~~~~~ 80 (205)
|+||||+|+.||||++|||+||.+|++|||+|+|||++|+||+|||||||+||||+|||+||+|.+|||+++|.+++++.
T Consensus 58 lkkVkf~A~~Ehe~i~Nfk~lQ~~f~klgi~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~~~g~~yd~~~~R~~~~~~~ 137 (295)
T KOG3000|consen 58 LKKVKFAARLEHEYIPNFKVLQTCFNKLGIDKVVDVDKLVKGPFQDNLEFLQWFKKFFDANYGGKGYDALARREGIGIGR 137 (295)
T ss_pred cccccccccccchhhhhhHHHHHHHHhcCCcccccHHHHhcccccchHHHHHHHHHHhhccCCccccCHHHHhhcccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999997644
Q ss_pred CCCC--CcccccccCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCChhhHHHHHHHHHHHHHH
Q psy12626 81 GSVR--SISATQIHKR--T-TPAVAPRPVAPKQPVAKSTAAAPRAGL---NSRGTPAGRVDNNSSRVDELNSQMMDLKLT 152 (205)
Q Consensus 81 ~~~~--~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~i~~L~~q~~elk~~ 152 (205)
..+. ++..+. |.+ + +.++|...+++ .+.++.+.++..+ .....+..+...+.+++.+|.+++.+++.+
T Consensus 138 ~~~~~~~~~~s~-p~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qe~~~l~~~l~~~~~~ 213 (295)
T KOG3000|consen 138 SAISEGSKGVSA-PKILSPVSSAAPQNFVPA---RTPQTLRNNKPCVEFGGKPNIALYPVDKLKQELEELTQQLTELKTT 213 (295)
T ss_pred cCcccccccccc-ccccccccccCcccCCCc---cCcccccCCCCCcccccccccccccchhhhHHHHHHHHHHHHHHHh
Confidence 3322 111111 222 1 11111111110 0000001111111 001111102245588999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-ccCc-h--HHHHHHHhhhccccC
Q psy12626 153 VDGLEKERDFYFGKLRDIEVLCQEH-EGET-P--VIQNILNILYATEIF 197 (205)
Q Consensus 153 v~~LEkERDFYF~KLRdIEilcQe~-~~~~-~--~~~~I~~ILYaTee~ 197 (205)
+++||+||||||+|||+||||||+. +.+. + ++++|+.|||+|+|+
T Consensus 214 ~~~le~ERdfyf~kLr~iEil~q~~~~~e~~~~~~v~rI~~ilyat~~g 262 (295)
T KOG3000|consen 214 IASLEKERDFYFSKLRDIEILCQTSPDPESIPNVMVKRILSILYATEEG 262 (295)
T ss_pred hhhhHHHHHHHHhhccchhhhccCCCccccccHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999994 3344 6 999999999999875
No 2
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=8.2e-37 Score=267.81 Aligned_cols=186 Identities=29% Similarity=0.296 Sum_probs=125.7
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCC
Q psy12626 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGN 80 (205)
Q Consensus 1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~~~~~ 80 (205)
|++|+|++..||+|..|+||||.+|.+.||||.+.|++||.|+||||||||||+|+||+.|+++..|||.+||.|.....
T Consensus 49 ~~~V~f~~~aey~~~~n~kILq~~Fs~~Gidk~v~v~~lvrck~qdnLeflQwlk~hWvr~~~~~~yd~~arr~~r~p~~ 128 (342)
T COG5217 49 DSLVRFPWIAEYKHPGNGKILQLLFSDYGIDKAVLVLVLVRCKLQDNLEFLQWLKDHWVRNLGHISYDRNARRLGRTPKS 128 (342)
T ss_pred HhhccccchhheecCCchhHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccChhHHhcCCCcch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998763211
Q ss_pred CC-C-CCcccccccCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCChhh----------HHHHHHH
Q psy12626 81 GS-V-RSISATQIHKRTTPAVAP-RPVAPKQPVAKSTAAAPRAGLN--SRGTPAGRVDNNSSR----------VDELNSQ 145 (205)
Q Consensus 81 ~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~----------i~~L~~q 145 (205)
.. . ..++....|.+ |.+ .+.++..-.. -++.-+ .-|. .+++ +..++. |-.|..+
T Consensus 129 tr~~~~~~rs~~~p~s----a~r~~s~G~~s~~s-l~t~hs-s~~~N~v~~t-----a~t~~~Lra~qa~Qe~igSln~~ 197 (342)
T COG5217 129 TRELIEWIRSLGIPIS----AIRELSKGVASCKS-LSTIHS-SFPQNFVKNT-----AGTHDYLRAMQACQEFIGSLNIK 197 (342)
T ss_pred HHHHHhhhhhcCCchh----hhhhhccCcccchh-hhhhhc-ccccccccCc-----chhHHHHHHHHHHHHHhhcccee
Confidence 00 0 00000000000 000 0000000000 000000 0010 1111 122333 3344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-------------------c-----hHHHHHHHhhhccccC
Q psy12626 146 MMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE-------------------T-----PVIQNILNILYATEIF 197 (205)
Q Consensus 146 ~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~-------------------~-----~~~~~I~~ILYaTee~ 197 (205)
+-+...++-.||.||+|||+|||+||||++....+ + .+.++|++|||+|+++
T Consensus 198 ly~~~~t~~~le~er~fYfnKlr~ieilv~t~k~~~~~~~~~~~~~~~~~h~~~t~~~m~~~~~rI~~ily~ta~g 273 (342)
T COG5217 198 LYFPVDTLVKLEMERAFYFNKLRSIEILVETLKREGPRASILPGTSLQCPHCKNTREIMDAKDNRIKEILYMTASG 273 (342)
T ss_pred eeeeccccceeeeHHHHHhhhcchhHHHHHHHhhhCccccccCCccccCCccCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 55667888889999999999999999999983321 1 4789999999999865
No 3
>PF03271 EB1: EB1-like C-terminal motif; InterPro: IPR004953 A group of microtubule-associated proteins called +TIPs (plus end tracking proteins), including EB1 (end-binding protein 1) family proteins, label growing microtubules ends specifically in diverse organisms and are implicated in spindle dynamics, chromosome segregation, and directing microtubules toward cortical sites. EB1 members have a bipartite composition: the N-terminal CH domain (IPR001715 from INTERPRO) mediates microtubule plus end localization and a C-terminal cargo binding domain (EB1-C) that captures cell polarity determinants. The EB1-C domain comprises a unique EB1-like sequence motif that acts as a binding site for other +TIP proteins. It interacts with the carboxy terminus of the adenomatous polyposis coli (APC) tumor suppressor, a well conserved +TIP phosphoprotein with a pivotal function in cell cycle regulation. Another binding partner of the EB1-C domain is the well conserved +TIP protein dynactin, a component of the large cytoplasmic dynein/dynactin complex [, , ]. The ~80-residue EB1-C domain starts with a long smoothly curved helix (alpha1), which is followed by a hairpin connection leading to a short second helix (alpha2) running antiparallel to alpha1. The two parallel alpha1 helices of the EB1-C domain dimer wrap around each other in a slightly left-handed supercoil. The two alpha2 helices run antiparallel to helices alpha1 and form a similar fork in the opposite orientation and rotated by 90 degrees. As a result, two helical segments from each monomer form a four-helix bundle. The side chain forming the hydrophobic core of this bundle are highly conserved [, , ]. Some protein known to contain an EB1-C domain are listed below: Yeast protein BIM1. Fission yeast microtubule integrity protein mal3. Vertebrate microtubule-associated protein RP/EB family member 1 (EB1). Vertebrate microtubule-associated protein RP/EB family member 2 (EB2 or RP1). Vertebrate microtubule-associated protein RP/EB family member 3 (EBF3). ; GO: 0008017 microtubule binding; PDB: 3TQ7_B 4E61_B 2HKQ_A 1YIG_B 3GJO_B 2HL5_B 1YIB_A 1WU9_A 1TXQ_B.
Probab=99.81 E-value=9.8e-21 Score=124.69 Aligned_cols=39 Identities=67% Similarity=1.091 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc-Cc---hHHHHHHHhhhc
Q psy12626 155 GLEKERDFYFGKLRDIEVLCQEHEG-ET---PVIQNILNILYA 193 (205)
Q Consensus 155 ~LEkERDFYF~KLRdIEilcQe~~~-~~---~~~~~I~~ILYa 193 (205)
+||+||||||+|||+||+|||+..+ .+ .++++|++||||
T Consensus 1 ~le~ERdFYf~KLR~IE~l~q~~~~~~~~~~~~~~~I~~ILYa 43 (43)
T PF03271_consen 1 SLEKERDFYFNKLRDIEILCQEANESENEPKDLIKKIQEILYA 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHCCTC--HHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHhcC
Confidence 6899999999999999999999543 32 489999999997
No 4
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.38 E-value=0.0043 Score=55.84 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHHHHHHhcCccceecccccccccccc
Q psy12626 8 TNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQD 46 (205)
Q Consensus 8 a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qd 46 (205)
+-.+++|+.|.+..|..|..++|.-+.|++.|+++++++
T Consensus 174 ta~t~~~Lra~qa~Qe~igSln~~ly~~~~t~~~le~er 212 (342)
T COG5217 174 TAGTHDYLRAMQACQEFIGSLNIKLYFPVDTLVKLEMER 212 (342)
T ss_pred cchhHHHHHHHHHHHHHhhccceeeeeeccccceeeeHH
Confidence 345799999999999999999999999999999999998
No 5
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=93.02 E-value=0.18 Score=37.03 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=48.2
Q ss_pred CCChHHHHHHHHHHHHHHHhcCccce-ecccccc-cccccccHHHHHHHHHHHh
Q psy12626 8 TNLEHEYIQNFKILQAAFKKMNVDKI-VPIDKLV-KGRFQDNFEFLQWFKKFFD 59 (205)
Q Consensus 8 a~~e~e~i~N~K~Lq~~F~k~~I~k~-ipV~kLv-kgk~qdnlEflqWfk~f~d 59 (205)
+....+.++|.....++.+++||+.. +..+.|+ +|.....+.++.++..+|.
T Consensus 54 ~~~~~~~~~Ni~~~l~~~~~~gi~~~~~~~~Dl~~~~n~~~vl~~l~~l~~~~~ 107 (107)
T cd00014 54 PLSRFKRLENINLALNFAEKLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRKFL 107 (107)
T ss_pred ccchhhHHHHHHHHHHHHHHcCCceeccCHHHHhhCCCceeeHHHHHHHHHhhC
Confidence 56788999999999999999999999 9999999 9999999999999998873
No 6
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=93.01 E-value=0.14 Score=37.58 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHHHHh-cCccceecccccc-cccccccHHHHHHHHHHHh
Q psy12626 10 LEHEYIQNFKILQAAFKK-MNVDKIVPIDKLV-KGRFQDNFEFLQWFKKFFD 59 (205)
Q Consensus 10 ~e~e~i~N~K~Lq~~F~k-~~I~k~ipV~kLv-kgk~qdnlEflqWfk~f~d 59 (205)
...+.++|..++-++..+ +||+..+..+.|+ .|.....+.|+.+|..+|.
T Consensus 57 ~~~~~~~Ni~~~l~~~~~~lg~~~~~~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 57 SPFDKLENIELALEAAEKKLGIPPLLSPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSCTS-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 567999999999999998 9999999999999 9999999999999999983
No 7
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=86.86 E-value=2 Score=32.08 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEV 172 (205)
Q Consensus 137 ~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEi 172 (205)
..+.+|.++-.-|---++-+|++||.|+..|+.+--
T Consensus 7 k~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~ 42 (84)
T PF11414_consen 7 KRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQE 42 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888899999999999999998754
No 8
>KOG1899|consensus
Probab=86.25 E-value=1.1 Score=44.66 Aligned_cols=39 Identities=38% Similarity=0.368 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy12626 140 DELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHE 178 (205)
Q Consensus 140 ~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~ 178 (205)
-+|++++.+||+...+||||+.=|=.|||+-|-|.|+..
T Consensus 177 lDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 177 LDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred hHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 356788999999999999999999999999999999865
No 9
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=83.07 E-value=2 Score=42.17 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy12626 139 VDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179 (205)
Q Consensus 139 i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~ 179 (205)
+.=|+.||+++=.++++|++||+.|=.|||++|..+.....
T Consensus 365 ~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~ 405 (557)
T PF01763_consen 365 NKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYRE 405 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999876543
No 10
>KOG4196|consensus
Probab=66.93 E-value=13 Score=30.10 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRD 169 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~LEkERDFYF~KLRd 169 (205)
+-.+|.+|+..|+..+..|-.|||.|=+|+-.
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888999999999999999999888754
No 11
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=57.58 E-value=7.8 Score=31.85 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHH-HHHHHhcCccceec-ccccccccccccHHHHHHHHHHH
Q psy12626 10 LEHEYIQNFKIL-QAAFKKMNVDKIVP-IDKLVKGRFQDNFEFLQWFKKFF 58 (205)
Q Consensus 10 ~e~e~i~N~K~L-q~~F~k~~I~k~ip-V~kLvkgk~qdnlEflqWfk~f~ 58 (205)
.-.--+.||..| +.+|+|+||.-+-. ++.++.|+...=--+|.=++.+.
T Consensus 49 s~~~Kl~NW~~Ln~kvl~kl~~~l~~~~i~~i~~~~~Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 49 SVAQKLNNWETLNEKVLKKLGIKLDKEDIEGIINCKPGAAESLLYQLYTKL 99 (158)
T ss_dssp SHHHHHHHHHHHHHHTTGGGT----HHHHHHHHTT-TTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334568999999 99999999975543 88999999999999999998887
No 12
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=56.70 E-value=24 Score=24.84 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDFY 163 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDFY 163 (205)
.++++-|+++|.+|...+..||.|-.++
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999998765
No 13
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=52.19 E-value=43 Score=24.04 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12626 155 GLEKERDFYFGKLRDIEVL 173 (205)
Q Consensus 155 ~LEkERDFYF~KLRdIEil 173 (205)
..-+||+||..||.+-=.+
T Consensus 42 ~~~~e~~~~~~kf~Ear~l 60 (68)
T PF11577_consen 42 KQKEEREFLERKFQEAREL 60 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467999999999874433
No 14
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=50.95 E-value=23 Score=25.24 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHHHHHHHhcCc-cceecccccccccccccHHHHHHH
Q psy12626 8 TNLEHEYIQNFKILQAAFKKMNV-DKIVPIDKLVKGRFQDNFEFLQWF 54 (205)
Q Consensus 8 a~~e~e~i~N~K~Lq~~F~k~~I-~k~ipV~kLvkgk~qdnlEflqWf 54 (205)
++...+.+.|......+.+++|+ ...+..+.|+.|+ .+.+-++.-+
T Consensus 54 ~~~~~~~~~Ni~~~l~~~~~~g~~~~~~~~~Dl~~~~-k~~~~v~~~l 100 (103)
T smart00033 54 SLSRFKKIENINLALSFAEKLGGKLVLFEPEDLVEGN-KLILGVIWTL 100 (103)
T ss_pred cccHHHHHHhHHHHHHHHHHcCCeeeccCHHHHhhcc-hHHHHHHHHH
Confidence 45578899999999999999996 4678899999998 6666665443
No 15
>PF09701 Cas_Cmr5: CRISPR-associated protein (Cas_Cmr5); InterPro: IPR010160 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a family of Cas proteins as represented by TM1791.1 from Thermotoga maritima. This family of Cas proteins are found in both archaeal and bacterial species.; PDB: 2OEB_A 2ZOP_A.
Probab=46.42 E-value=15 Score=28.57 Aligned_cols=15 Identities=33% Similarity=1.015 Sum_probs=12.7
Q ss_pred ccHHHHHHHHHHHhh
Q psy12626 46 DNFEFLQWFKKFFDV 60 (205)
Q Consensus 46 dnlEflqWfk~f~d~ 60 (205)
.-|+|+.|+|+|-++
T Consensus 106 e~La~l~WlKRfAea 120 (122)
T PF09701_consen 106 EALAFLNWLKRFAEA 120 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468999999999764
No 16
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=46.25 E-value=35 Score=26.29 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 139 VDELNSQMMDLKLTVDGLEKERDF 162 (205)
Q Consensus 139 i~~L~~q~~elk~~v~~LEkERDF 162 (205)
+.++.+++.+|+..+..|+.|+||
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~di 96 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENEL 96 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666677663
No 17
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.92 E-value=42 Score=23.21 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDFY 163 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDFY 163 (205)
..++.+|+.++.+++...+.|+.|.+-.
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777777666533
No 18
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.52 E-value=37 Score=29.96 Aligned_cols=31 Identities=13% Similarity=0.360 Sum_probs=22.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q psy12626 135 NSSRVDELNSQMMDLKLTVDG--------LEKERDFYFG 165 (205)
Q Consensus 135 ~~~~i~~L~~q~~elk~~v~~--------LEkERDFYF~ 165 (205)
...+|+.|+.+|.+|+-.+|. .++.||+|=.
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777788887777777766 4778999954
No 19
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=40.24 E-value=54 Score=21.76 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy12626 137 SRVDELNSQMMDLKLTVDGLEKE 159 (205)
Q Consensus 137 ~~i~~L~~q~~elk~~v~~LEkE 159 (205)
.++..|..++..|+..+..|++|
T Consensus 32 ~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 32 QEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556666666666666666655
No 20
>KOG4571|consensus
Probab=39.77 E-value=50 Score=30.15 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDFYFGKL 167 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDFYF~KL 167 (205)
..+++.|.....+||.++..||+|=+ |+.+|
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~-ylKql 284 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIR-YLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34677888889999999999999977 66554
No 21
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.09 E-value=75 Score=27.82 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 145 QMMDLKLTVDGLEKERDFYFGKLRDIEVL 173 (205)
Q Consensus 145 q~~elk~~v~~LEkERDFYF~KLRdIEil 173 (205)
-|.|++...+.|..||.++-.-||+|..=
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~D 61 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQD 61 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999988543
No 22
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=37.23 E-value=60 Score=29.94 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 141 ELNSQMMDLKLTVDGLEKERDFYFGKLR 168 (205)
Q Consensus 141 ~L~~q~~elk~~v~~LEkERDFYF~KLR 168 (205)
+|..++.-+....+.+..|||+|=+|--
T Consensus 144 qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 144 QLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555667889999988853
No 23
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=36.01 E-value=1e+02 Score=30.70 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCc-------hHHHHHHHhhhcccc
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-------PVIQNILNILYATEI 196 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~~-------~~~~~I~~ILYaTee 196 (205)
..++.+|+++++++...++.++.|.+=.=..+..++.-+.+...+. .+.+++.++|-..++
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ 394 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEE 394 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 4578899999999999999999999999898888877776655421 466777777766543
No 24
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=35.85 E-value=1.3e+02 Score=20.10 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12626 139 VDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQ 175 (205)
Q Consensus 139 i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQ 175 (205)
|..|.+|++.|+..+..|+.- |++-+..|++-.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~----fs~yKKa~lFp~ 33 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAA----FSQYKKAELFPN 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCC
Confidence 456778888888888888763 777777777643
No 25
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=35.51 E-value=26 Score=24.38 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHH
Q psy12626 17 NFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKF 57 (205)
Q Consensus 17 N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f 57 (205)
|.+.|++-|.+++.-..-+++.|+.-.-..-=+...||..-
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~ 49 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAER 49 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHh
Confidence 34669999999999999999999998888888899999764
No 26
>PHA01365 hypothetical protein
Probab=35.03 E-value=20 Score=26.93 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCcccee--cccccccccc
Q psy12626 19 KILQAAFKKMNVDKIV--PIDKLVKGRF 44 (205)
Q Consensus 19 K~Lq~~F~k~~I~k~i--pV~kLvkgk~ 44 (205)
|+||.+|+...|+|.+ |-+.=++.|+
T Consensus 10 rilqK~fkdskieki~~lps~~dv~~KY 37 (91)
T PHA01365 10 KLLQKCFKDSSIDVIFMSCNNLSPHKKY 37 (91)
T ss_pred HHHHHHhCCCceEEEEEecCCCCccccE
Confidence 7999999999999973 4444445444
No 27
>smart00338 BRLZ basic region leucin zipper.
Probab=33.95 E-value=1.1e+02 Score=20.77 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=21.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 135 NSSRVDELNSQMMDLKLTVDGLEKERDFYF 164 (205)
Q Consensus 135 ~~~~i~~L~~q~~elk~~v~~LEkERDFYF 164 (205)
...++..|..+..+|...+..|+.|-..+=
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888766443
No 28
>KOG4797|consensus
Probab=33.65 E-value=64 Score=25.58 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 137 SRVDELNSQMMDLKLTVDGLEKERD 161 (205)
Q Consensus 137 ~~i~~L~~q~~elk~~v~~LEkERD 161 (205)
++++-|++||.||......||+|-.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~ 91 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENS 91 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666643
No 29
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=32.44 E-value=48 Score=23.92 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhcccCchHHHHHHHhhhccc
Q psy12626 166 KLRDIEVLCQEHEGETPVIQNILNILYATE 195 (205)
Q Consensus 166 KLRdIEilcQe~~~~~~~~~~I~~ILYaTe 195 (205)
=|.-||.+|.....-.+.+..|+..||..|
T Consensus 7 ~L~ale~~~~~~~~~~~~~~~il~~LYd~D 36 (84)
T PF02020_consen 7 LLNALEEFCAENPNLMPLFPKILQQLYDED 36 (84)
T ss_dssp HHHHHHHHHHHTCGHGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHhhhh
Confidence 367889999663322278999999999864
No 30
>TIGR01881 cas_Cmr5 CRISPR-associated protein, Cmr5 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species as part of the 6-gene CRISPR RAMP module.
Probab=32.36 E-value=33 Score=27.27 Aligned_cols=50 Identities=18% Similarity=0.517 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHhcCc-cce-eccccccccccc-------ccHHHHHHHHHHHhh
Q psy12626 11 EHEYIQNFKILQAAFKKMNV-DKI-VPIDKLVKGRFQ-------DNFEFLQWFKKFFDV 60 (205)
Q Consensus 11 e~e~i~N~K~Lq~~F~k~~I-~k~-ipV~kLvkgk~q-------dnlEflqWfk~f~d~ 60 (205)
+..|.-=+..|-..|.+.++ ++. ..++.|+.+.+. .-++++.|+|+|-++
T Consensus 65 ~~~y~~l~~~l~~~L~~~~~~~~~~~l~~~il~~~~~~y~~~T~eaL~~l~WLKRfAea 123 (127)
T TIGR01881 65 ETSYTKYYAHILYWLKERELVDKFKNALKELMEKDYSDSRIATEEALRYLNWLKRLAEA 123 (127)
T ss_pred HHHHHHHHHHHHHHHHHcccccchHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555557777788887764 222 347777776543 458999999999765
No 31
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=31.78 E-value=45 Score=26.94 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHH
Q psy12626 14 YIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWF 54 (205)
Q Consensus 14 ~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWf 54 (205)
--+|++.|+..+..++-+..|+...|.+|..-+-+.|+...
T Consensus 2 l~~~l~~L~~~Lr~~~yp~~vd~~~l~~G~p~afLpil~~~ 42 (131)
T PF15007_consen 2 LKGNLRRLEQELRSLKYPDEVDYQGLYKGDPSAFLPILHYA 42 (131)
T ss_pred hhhHHHHHHHHHHHCCCCCccCHHHHhcCCHHHHHHHHHHH
Confidence 35799999999999999999999999999998877777654
No 32
>KOG0464|consensus
Probab=31.75 E-value=24 Score=34.42 Aligned_cols=13 Identities=54% Similarity=1.181 Sum_probs=10.4
Q ss_pred cccHHHHHHHHHH
Q psy12626 45 QDNFEFLQWFKKF 57 (205)
Q Consensus 45 qdnlEflqWfk~f 57 (205)
.-|+|||||.|.=
T Consensus 322 ernyeflqwykdd 334 (753)
T KOG0464|consen 322 ERNYEFLQWYKDD 334 (753)
T ss_pred hcchHHHhhhhhh
Confidence 4599999998753
No 33
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=31.22 E-value=71 Score=28.38 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhh
Q psy12626 139 VDELNSQMMDLKLTVDGLEKER-DFYFGKLRDIEVLCQE 176 (205)
Q Consensus 139 i~~L~~q~~elk~~v~~LEkER-DFYF~KLRdIEilcQe 176 (205)
++-+.+++..|+..+-.-+++| |-||.-+|+||.=++.
T Consensus 164 LD~v~~d~~~L~~~Lg~~Dr~kLd~yl~sireiE~rl~~ 202 (302)
T PF07586_consen 164 LDLVREDAKSLRRRLGAEDRQKLDQYLDSIREIEKRLQQ 202 (302)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777777777777777 8999999999987654
No 34
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=30.39 E-value=1.2e+02 Score=23.58 Aligned_cols=38 Identities=18% Similarity=0.465 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLE--KERDFYFGKLRDIEVLCQ 175 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LE--kERDFYF~KLRdIEilcQ 175 (205)
..++..|.++++.+-..++-|. .-|||=| ++..|.+..
T Consensus 39 ~~qlrqllekVqNmSqsievL~~RT~rdlqy--v~~~E~~mk 78 (101)
T PF12308_consen 39 SRQLRQLLEKVQNMSQSIEVLDLRTQRDLQY--VRKMETQMK 78 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHH--HHHHHHHHH
Confidence 4588999999999988887765 4899866 334444433
No 35
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.68 E-value=60 Score=30.45 Aligned_cols=28 Identities=29% Similarity=0.259 Sum_probs=24.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 133 DNNSSRVDELNSQMMDLKLTVDGLEKER 160 (205)
Q Consensus 133 ~~~~~~i~~L~~q~~elk~~v~~LEkER 160 (205)
....++.+.|++|+.+|+..|+.||.|+
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3457788999999999999999999886
No 36
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=28.59 E-value=1.1e+02 Score=21.45 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 138 RVDELNSQMMDLKLTVDGLEKERD 161 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~LEkERD 161 (205)
.+++|.+-|..|+..+..+|.++.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888887764
No 37
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.62 E-value=2e+02 Score=21.55 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=32.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 134 NNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDI 170 (205)
Q Consensus 134 ~~~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdI 170 (205)
...++++.+..++..|...++.||+--|--.++||.+
T Consensus 23 ~~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~L 59 (83)
T PF03670_consen 23 FDEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQEL 59 (83)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3467889999999999999999999999999999864
No 38
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.49 E-value=1.7e+02 Score=21.32 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy12626 137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHE 178 (205)
Q Consensus 137 ~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~ 178 (205)
..|++|+..+.+....++.+-.-=+.-.+||.+.+--.++..
T Consensus 22 ~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~~~~ 63 (72)
T COG2900 22 QTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAIASP 63 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 458888999999999999988888888999999876665544
No 39
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.16 E-value=92 Score=21.81 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q psy12626 138 RVDELNSQMMDLKLTVDGLE--------KERDFYFGKLRDIE 171 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~LE--------kERDFYF~KLRdIE 171 (205)
.|.++...+.+....++.|| .+|..|-+|||+.-
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr 67 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYR 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34455555555555555554 58999999999754
No 40
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.89 E-value=1e+02 Score=21.38 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy12626 137 SRVDELNSQMMDLKLTVDGLEKE 159 (205)
Q Consensus 137 ~~i~~L~~q~~elk~~v~~LEkE 159 (205)
..|.+|..++..|...|+.|..+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~d 25 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSD 25 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666554
No 41
>PRK14139 heat shock protein GrpE; Provisional
Probab=26.87 E-value=2.3e+02 Score=24.04 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12626 137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQE 176 (205)
Q Consensus 137 ~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe 176 (205)
.++..|.+++.+++..++.| +|-|-.-+-|.|-+-..
T Consensus 32 ~e~~~l~~~l~~le~e~~el---kd~~lR~~AefeN~rKR 68 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAEL---QDSFLRAKAETENVRRR 68 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34445555555555444444 23344444444444333
No 42
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=26.76 E-value=1e+02 Score=22.91 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q psy12626 138 RVDELNSQMMDLKLTVDGLEKERDFYFGK--LRDIEV 172 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~LEkERDFYF~K--LRdIEi 172 (205)
-+.+|.+-+..++.....+.+=++|||++ ++|-|.
T Consensus 15 ~l~~le~~l~~~~~~~~~~~~L~~YY~s~~w~~d~e~ 51 (90)
T PF14131_consen 15 LLEELEEALEKWQEAQPDYRKLRDYYGSEEWMEDYEA 51 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcHhHHHHHHH
Confidence 35566666777888888888899999766 344444
No 43
>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5.
Probab=25.99 E-value=68 Score=22.90 Aligned_cols=30 Identities=33% Similarity=0.497 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhcccCchHHHHHHHhhhccc
Q psy12626 166 KLRDIEVLCQEHEGETPVIQNILNILYATE 195 (205)
Q Consensus 166 KLRdIEilcQe~~~~~~~~~~I~~ILYaTe 195 (205)
-|--||.+|.+.+...+.+..|+..||..|
T Consensus 17 ~L~ale~~~~~~~~~~~~~~~il~~LYd~d 46 (83)
T smart00515 17 LLYAIEEFCVELEKLIKLLPKILKSLYDAD 46 (83)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHhhhc
Confidence 477889999765432278899999999864
No 44
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.74 E-value=3.6e+02 Score=23.76 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEH 177 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~ 177 (205)
..++.+|.+++.+++..++.| +|-|-..+-|+|-+....
T Consensus 66 ~~~~~~l~~el~~l~~e~~el---kd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 66 AARLAQLEQELESLKQELEEL---NSQYMRIAADFDNFRKRT 104 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 445666666666666555554 344555555555554443
No 45
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.
Probab=25.54 E-value=53 Score=25.27 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCccc
Q psy12626 18 FKILQAAFKKMNVDK 32 (205)
Q Consensus 18 ~K~Lq~~F~k~~I~k 32 (205)
+|||++|++|++|..
T Consensus 38 ~kVL~~Alkry~I~~ 52 (98)
T cd01786 38 EKILKNAMKRHNLND 52 (98)
T ss_pred HHHHHHHHHHcCCCh
Confidence 699999999999986
No 46
>PF05604 DUF776: Protein of unknown function (DUF776); InterPro: IPR008494 This family consists of several highly related Mus musculus and Homo sapiens proteins of unknown function.
Probab=25.44 E-value=35 Score=28.87 Aligned_cols=16 Identities=50% Similarity=0.569 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCcccee
Q psy12626 19 KILQAAFKKMNVDKIV 34 (205)
Q Consensus 19 K~Lq~~F~k~~I~k~i 34 (205)
..||.||+||.||-.-
T Consensus 11 esLQTAFKKLRVDA~~ 26 (178)
T PF05604_consen 11 ESLQTAFKKLRVDAEG 26 (178)
T ss_pred HHHHHHHHHheecccc
Confidence 3699999999999753
No 47
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.42 E-value=1.1e+02 Score=22.31 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHH
Q psy12626 135 NSSRVDELNSQMMDLKLTVDGLEK 158 (205)
Q Consensus 135 ~~~~i~~L~~q~~elk~~v~~LEk 158 (205)
..+.+++|.++.+.|+..|+.||+
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 40 DQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888889999999999886
No 48
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=25.41 E-value=1.1e+02 Score=29.79 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHH
Q psy12626 135 NSSRVDELNSQMMDLKLTVDGLEKE 159 (205)
Q Consensus 135 ~~~~i~~L~~q~~elk~~v~~LEkE 159 (205)
..++|+.|++|+..|+.+|..||++
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~ 47 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAK 47 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999875
No 49
>PHA03011 hypothetical protein; Provisional
Probab=25.30 E-value=2e+02 Score=22.56 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy12626 138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE 180 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~ 180 (205)
.+++|..|..+|-..-.-+|.|| .|.|++.|+..++
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~-------k~~~~iIQdn~d~ 100 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEI-------KDLEIIIQDNDDE 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhchHH
Confidence 44455555555554455555555 5889999998764
No 50
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=24.94 E-value=1.3e+02 Score=21.46 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 138 RVDELNSQMMDLKLTVDGLEKERD 161 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~LEkERD 161 (205)
.+.+|.+.|.-|+..++.|+.||.
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888888888874
No 51
>PRK14163 heat shock protein GrpE; Provisional
Probab=24.49 E-value=4.7e+02 Score=22.74 Aligned_cols=35 Identities=6% Similarity=-0.008 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12626 139 VDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQE 176 (205)
Q Consensus 139 i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe 176 (205)
..+|.+++.+++..++.| +|-|....-|.|-+...
T Consensus 42 ~~~l~~~l~~l~~e~~el---~d~~lR~~AEfeN~rkR 76 (214)
T PRK14163 42 TAGLTAQLDQVRTALGER---TADLQRLQAEYQNYRRR 76 (214)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344555555544444443 34454444444444433
No 52
>PTZ00234 variable surface protein Vir12; Provisional
Probab=23.92 E-value=4.9e+02 Score=25.00 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=8.3
Q ss_pred cccHHHHHHHHHHHhh
Q psy12626 45 QDNFEFLQWFKKFFDV 60 (205)
Q Consensus 45 qdnlEflqWfk~f~d~ 60 (205)
..=.+.|+-++..|+.
T Consensus 174 ~kY~~Yl~~I~~LYkk 189 (433)
T PTZ00234 174 DKYTKYLDNINKLYIN 189 (433)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 53
>KOG4787|consensus
Probab=23.75 E-value=1.6e+02 Score=29.96 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=40.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy12626 133 DNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHE 178 (205)
Q Consensus 133 ~~~~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~ 178 (205)
++.+.|+..+.-|++.|+..++.+|+|.|.--.||-.+|-=|....
T Consensus 328 ~N~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~ 373 (852)
T KOG4787|consen 328 GNAHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGG 373 (852)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccc
Confidence 3456678888889999999999999999999999999999987754
No 54
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=23.64 E-value=1.4e+02 Score=22.07 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12626 139 VDELNSQMMDLKLTVDGLEKER 160 (205)
Q Consensus 139 i~~L~~q~~elk~~v~~LEkER 160 (205)
|.+|+++...|+..+..||.|.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~EL 23 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAEL 23 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888776664
No 55
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.30 E-value=3.8e+02 Score=21.27 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--c-hHHHHHHHhhhccc
Q psy12626 137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE--T-PVIQNILNILYATE 195 (205)
Q Consensus 137 ~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~--~-~~~~~I~~ILYaTe 195 (205)
.++.++-.+.+.|+..+..+...|.=+=.-|++|+.-..|.+.. + ++-+.|=.||+.++
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~ 67 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVS 67 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhh
Confidence 36777777888888888888888888888899999999998753 2 67778888888764
No 56
>KOG4674|consensus
Probab=22.67 E-value=98 Score=34.88 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 135 NSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLR 168 (205)
Q Consensus 135 ~~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLR 168 (205)
+.++|++|..++++....++.|-+|||||=..|-
T Consensus 577 a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~ 610 (1822)
T KOG4674|consen 577 ASEKIAELEKELEEQEQRIESLLTERDMYKELLA 610 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4668889999999999999999999999953333
No 57
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=22.18 E-value=1.6e+02 Score=21.73 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERD 161 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERD 161 (205)
.+.+.+|..++++|...++.||..|+
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~ 49 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVN 49 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888765
No 58
>PHA03386 P10 fibrous body protein; Provisional
Probab=22.05 E-value=2.4e+02 Score=21.66 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHhhhc
Q psy12626 138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGETPVIQNILNILYA 193 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~~~~~~~I~~ILYa 193 (205)
.|.++..++.-|+.+|++++.- +.||-.+=--+.+.. .-+..|++||--
T Consensus 13 dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~---tkV~~Iq~iLn~ 61 (94)
T PHA03386 13 AVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELD---TKVSDIQSILTG 61 (94)
T ss_pred HHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHH---HHHHHHHHhcCc
Confidence 3444455555555555555544 455433322222211 357788888864
No 59
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=22.05 E-value=62 Score=28.74 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=36.9
Q ss_pred cCCChHHHHHHHHHHHHHHHhcCccceecccccccccccc
Q psy12626 7 RTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQD 46 (205)
Q Consensus 7 ~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qd 46 (205)
++.+|+||+.=.++|...+.|+..+.+--++.|.++..+.
T Consensus 17 ~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~ 56 (262)
T PF14225_consen 17 ESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQL 56 (262)
T ss_pred cCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCcc
Confidence 4678999999999999999999999988899999998877
No 60
>KOG4348|consensus
Probab=22.03 E-value=7.7e+02 Score=24.32 Aligned_cols=40 Identities=30% Similarity=0.553 Sum_probs=32.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy12626 135 NSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE 180 (205)
Q Consensus 135 ~~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~ 180 (205)
....+++|.+|+-||.--|+.|.+.-- |.||.|.-+.+++
T Consensus 567 ~k~s~delr~qi~el~~ive~lk~~~~------kel~kl~~dleee 606 (627)
T KOG4348|consen 567 KKNSLDELRAQIIELLCIVEALKKDHG------KELEKLRKDLEEE 606 (627)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 355789999999999999999988644 6777777777665
No 61
>PRK14140 heat shock protein GrpE; Provisional
Probab=21.22 E-value=3.4e+02 Score=23.15 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEH 177 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~ 177 (205)
...+.+|.+++.+++..++.|+ |-|-..+-|.|-+....
T Consensus 36 ~~~~~~l~~~i~~l~~ei~elk---d~~lR~~Ae~eN~rkR~ 74 (191)
T PRK14140 36 AELLDEEQAKIAELEAKLDELE---ERYLRLQADFENYKRRI 74 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3455556666666665555552 44555555555554443
No 62
>KOG4422|consensus
Probab=20.83 E-value=1e+02 Score=30.25 Aligned_cols=20 Identities=35% Similarity=0.908 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q psy12626 157 EKERDFYFGKLRDIEVLCQEHE 178 (205)
Q Consensus 157 EkERDFYF~KLRdIEilcQe~~ 178 (205)
-.+|.|||.||.+ .+||...
T Consensus 394 ~~~~~fYyr~~~~--licq~es 413 (625)
T KOG4422|consen 394 DQHRNFYYRKFFD--LICQMES 413 (625)
T ss_pred HHHHHHHHHHHHH--HHHHHHH
Confidence 3699999999987 5888743
No 63
>PRK14158 heat shock protein GrpE; Provisional
Probab=20.82 E-value=4.3e+02 Score=22.54 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHE 178 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~ 178 (205)
..++..|.+++.+++..++.| +|-|-..+-|+|-+-...+
T Consensus 39 ~~~~~~le~~l~~le~e~~el---~d~~lR~~AefeN~RkR~~ 78 (194)
T PRK14158 39 ADRIKELEEALAAKEAEAAAN---WDKYLRERADLENYRKRVQ 78 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655 2446566666666654443
No 64
>PRK14162 heat shock protein GrpE; Provisional
Probab=20.52 E-value=4.3e+02 Score=22.56 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12626 137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQ 175 (205)
Q Consensus 137 ~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQ 175 (205)
.++..|.+++.+++..++.| +|-|-.-+-|.|-+-.
T Consensus 39 ~e~~~l~~~l~~l~~e~~el---kd~~lR~~AEfeN~rk 74 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDL---EDKYLRSQAEIQNMQN 74 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34444444444444444433 2334444444444433
No 65
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.25 E-value=71 Score=31.20 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEK 158 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEk 158 (205)
.++|++|++|+++|+.+++.|.+
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHHHhhccccc
No 66
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.15 E-value=1.6e+02 Score=21.48 Aligned_cols=23 Identities=26% Similarity=0.435 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEK 158 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEk 158 (205)
.+.+++|.++.+.|...|+.||+
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888875
Done!