Query psy12626
Match_columns 205
No_of_seqs 139 out of 429
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 15:26:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r8u_A Microtubule-associated 100.0 5.8E-65 2E-69 445.1 5.8 190 1-197 58-252 (268)
2 4abo_I MAL3, microtubule integ 100.0 1.4E-38 4.6E-43 256.2 5.8 79 1-79 48-126 (145)
3 2qjx_A Protein BIM1; calponin 100.0 6.7E-37 2.3E-41 242.2 5.9 76 1-76 52-127 (127)
4 1wyo_A Protein EB3, microtubul 100.0 3.1E-35 1.1E-39 240.3 8.9 80 1-80 65-144 (159)
5 2qjz_A Microtubule-associated 100.0 6.1E-35 2.1E-39 229.9 5.8 76 1-76 48-123 (123)
6 3tq7_B Microtubule-associated 99.9 9.4E-27 3.2E-31 171.3 5.5 60 138-197 2-62 (82)
7 4e61_A Protein BIM1; EB1-like 99.9 6.1E-25 2.1E-29 168.2 6.5 64 134-197 15-102 (106)
8 3mtu_A Tropomyosin alpha-1 cha 99.9 7.1E-23 2.4E-27 148.4 8.2 61 138-198 10-71 (75)
9 3qh9_A Liprin-beta-2; coiled-c 86.7 1.2 4.1E-05 32.1 5.1 33 138-170 20-52 (81)
10 2d89_A EHBP1 protein; all alph 76.3 1.6 5.6E-05 32.9 2.8 56 4-59 55-110 (119)
11 2ee7_A Sperm flagellar protein 71.6 2.4 8.1E-05 32.8 2.7 52 9-60 67-120 (127)
12 2d87_A Smoothelin splice isofo 70.7 3.5 0.00012 31.5 3.5 56 4-59 53-112 (128)
13 1wyl_A NEDD9 interacting prote 70.6 2.2 7.6E-05 32.0 2.3 54 5-58 54-109 (116)
14 2wt7_B Transcription factor MA 70.1 6.9 0.00024 28.6 4.8 34 136-169 54-87 (90)
15 1m5i_A APC protein; coiled-coi 69.5 8.5 0.00029 29.7 5.3 36 138-173 8-43 (125)
16 1ci6_A Transcription factor AT 68.2 8.9 0.00031 25.8 4.7 35 135-169 28-62 (63)
17 1bkr_A Spectrin beta chain; fi 66.9 5 0.00017 29.7 3.5 54 5-58 50-106 (109)
18 1wyq_A Spectrin beta chain, br 65.9 5.8 0.0002 30.2 3.8 56 5-60 54-112 (127)
19 2d88_A Protein mical-3; all al 61.4 6 0.00021 29.8 3.1 56 4-59 55-114 (121)
20 1sh5_A Plectin 1, PLTN, PCN; a 58.1 2.7 9.1E-05 35.0 0.6 55 13-67 188-245 (245)
21 1wku_A Alpha-actinin 3; calpon 48.7 11 0.00038 31.6 3.0 57 4-60 186-246 (254)
22 2yy0_A C-MYC-binding protein; 40.2 68 0.0023 20.8 5.2 26 136-161 18-43 (53)
23 2xdj_A Uncharacterized protein 40.2 40 0.0014 24.0 4.4 29 136-164 26-62 (83)
24 1bhd_A Utrophin; calponin homo 39.8 7.6 0.00026 29.1 0.5 44 14-57 64-110 (118)
25 2qjx_A Protein BIM1; calponin 39.4 15 0.00051 28.3 2.2 18 47-64 12-29 (127)
26 3d3m_A Eukaryotic translation 38.2 1E+02 0.0036 23.9 7.1 57 139-195 73-130 (168)
27 2zop_A Putative uncharacterize 38.2 15 0.00052 27.4 2.0 17 46-62 96-112 (114)
28 1pxy_A Fimbrin-like protein; c 36.3 15 0.00053 33.7 2.1 55 4-58 199-253 (506)
29 1dip_A Delta-sleep-inducing pe 35.4 34 0.0012 24.2 3.3 27 136-162 14-40 (78)
30 1a93_B MAX protein, coiled coi 34.9 30 0.001 20.9 2.5 22 136-157 13-34 (34)
31 2oeb_A Hypothetical protein; u 34.6 21 0.00071 28.3 2.3 18 46-63 135-152 (155)
32 2akf_A Coronin-1A; coiled coil 32.2 66 0.0023 18.8 3.6 23 136-158 5-27 (32)
33 1rt8_A Fimbrin; filamentous ac 31.0 20 0.00068 33.0 1.9 55 4-58 208-262 (513)
34 4etp_A Kinesin-like protein KA 29.6 81 0.0028 28.2 5.7 33 136-168 9-41 (403)
35 1hjb_A Ccaat/enhancer binding 29.6 93 0.0032 22.2 5.0 27 136-162 42-68 (87)
36 3c5t_B Exendin-4, exenatide; l 28.6 19 0.00064 21.4 0.9 9 48-56 12-20 (31)
37 1go4_E MAD1 (mitotic arrest de 28.6 46 0.0016 24.6 3.2 16 146-161 14-29 (100)
38 2ve7_A Kinetochore protein HEC 27.9 62 0.0021 28.0 4.5 46 18-63 18-63 (315)
39 1dxx_A Dystrophin; structural 27.3 34 0.0012 28.3 2.6 45 14-58 192-239 (246)
40 3jui_A Translation initiation 27.1 1.2E+02 0.0041 23.9 5.8 55 137-195 77-135 (182)
41 2l5g_B Putative uncharacterize 26.8 88 0.003 19.7 3.8 24 136-159 15-38 (42)
42 2e62_A Protein AT5G25060; CWF2 26.7 27 0.00092 23.7 1.5 15 165-179 16-30 (61)
43 4dzn_A Coiled-coil peptide CC- 26.6 99 0.0034 18.0 3.7 19 138-156 3-21 (33)
44 1wjo_A T-plastin; CH domain, a 25.9 93 0.0032 23.5 4.6 48 10-57 66-113 (124)
45 3brv_B NF-kappa-B essential mo 25.5 1.7E+02 0.0058 20.3 5.8 30 145-174 27-63 (70)
46 1jcd_A Major outer membrane li 25.0 88 0.003 20.4 3.8 23 136-158 3-25 (52)
47 1yhn_B RILP, RAB interacting l 22.9 1.7E+02 0.0058 19.9 4.9 31 137-167 3-33 (65)
48 2v66_B Nuclear distribution pr 22.6 2E+02 0.0069 21.4 5.9 32 145-176 36-67 (111)
49 3mn2_A Probable ARAC family tr 21.7 1.1E+02 0.0038 21.1 4.1 50 9-59 45-96 (108)
50 1jnm_A Proto-oncogene C-JUN; B 21.6 1.1E+02 0.0037 20.0 3.8 23 137-159 29-51 (62)
51 1a92_A Delta antigen; leucine 21.5 1.7E+02 0.0059 18.9 4.9 37 148-191 11-47 (50)
52 1gu4_A CAAT/enhancer binding p 21.0 1.1E+02 0.0036 21.5 3.8 26 136-161 42-67 (78)
53 2wt7_A Proto-oncogene protein 20.9 1.8E+02 0.0063 19.0 5.4 27 136-162 29-55 (63)
54 2b4n_A Gastric inhibitory poly 20.8 41 0.0014 21.2 1.4 9 48-56 20-28 (42)
55 3m3w_A Pacsin3, protein kinase 20.7 2.4E+02 0.0081 23.9 6.8 40 141-180 198-237 (320)
56 1t2k_D Cyclic-AMP-dependent tr 20.6 1.2E+02 0.004 19.7 3.8 24 136-159 28-51 (61)
No 1
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=100.00 E-value=5.8e-65 Score=445.14 Aligned_cols=190 Identities=55% Similarity=0.894 Sum_probs=73.4
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCC
Q psy12626 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGN 80 (205)
Q Consensus 1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~~~~~ 80 (205)
|+||||+|++||||++||||||++|+|+||+|+|||++|||||||||||||||||+|||+||++.+|||+++|.|+++++
T Consensus 58 l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~k~ipV~kLvkgk~qDNlEFlqWfkkf~d~n~~~~~Yd~~~~R~g~~~~~ 137 (268)
T 2r8u_A 58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAV 137 (268)
T ss_dssp GGGCCTTCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHTC------
T ss_pred hhhccCCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccCchhHHHHHHHHHHHHHHcCCCCCCCHHHHhcCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CC-CCCcccccccCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q psy12626 81 GS-VRSISATQIHKRTT---PAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGL 156 (205)
Q Consensus 81 ~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~L~~q~~elk~~v~~L 156 (205)
+. ++.++..+ ++++. ..++.++.++.++.+. +..++.+ ++.+...+.+..++.+|.+|+++|++++++|
T Consensus 138 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~l~~el~~lk~~v~~l 210 (268)
T 2r8u_A 138 APSLVAPALNK-PKKPLTSSSAAPQRPISTQRTAAA-----PKAGPGV-VRKNPGVGNGDDEAAELMQQVNVLKLTVEDL 210 (268)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCcccccC-CCCccccccCCCCCCCcccccCCC-----CCCCCCC-CCCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 32 22221111 22221 1111111010000000 0000000 0000011223456889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCc-hHHHHHHHhhhccccC
Q psy12626 157 EKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATEIF 197 (205)
Q Consensus 157 EkERDFYF~KLRdIEilcQe~~~~~-~~~~~I~~ILYaTee~ 197 (205)
||||||||+||||||+|||+.++++ +++++|++|||+|||+
T Consensus 211 EkERDFYF~KLRdIEilcQe~~~~~~~~~~~I~~ILYaTeeg 252 (268)
T 2r8u_A 211 EKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEG 252 (268)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhccccC
Confidence 9999999999999999999998876 8999999999999985
No 2
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-38 Score=256.19 Aligned_cols=79 Identities=41% Similarity=0.741 Sum_probs=75.1
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCCCCC
Q psy12626 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMG 79 (205)
Q Consensus 1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~~~~ 79 (205)
|+||||+|+.||||++||||||++|+|+||+|+|||++|||||||||||||||||+|||+||++.+|||+++|+|++++
T Consensus 48 l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~k~ipV~kLvKgk~QDNlEFlQWfkkf~d~n~~~~~YD~~~~R~g~~~~ 126 (145)
T 4abo_I 48 LKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQYYPGGDYDALARRGNRGPA 126 (145)
T ss_dssp TTTSCSSCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCSSCCCHHHHHTCC---
T ss_pred hhhcccCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccchHhHHHHHHHHHHHHHhcCCCCCCCHHHhcCCCCcc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999988763
No 3
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-37 Score=242.17 Aligned_cols=76 Identities=43% Similarity=0.739 Sum_probs=74.4
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCC
Q psy12626 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGE 76 (205)
Q Consensus 1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~ 76 (205)
|+||||+|++||||++|||+||++|+|++|+|+|||++|||||||||||||||||+|||+||++++|||+++|+++
T Consensus 52 l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~k~ipV~kLvKgrfQDNlEFlQWfkkf~d~n~~g~~YDa~~~R~~~ 127 (127)
T 2qjx_A 52 MNRVKFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFLQWLKKHWIRHKDESVYDPDARRKYR 127 (127)
T ss_dssp GGGSCTTCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCSSCCCHHHHTTTC
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccCchhHHHHHHHHHHHHHhcCCCCCCCHHHhhccC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999864
No 4
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=240.33 Aligned_cols=80 Identities=65% Similarity=1.156 Sum_probs=77.7
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCC
Q psy12626 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGN 80 (205)
Q Consensus 1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~~~~~ 80 (205)
|+||||+++.||||++|||+||++|+|+||+|+|||++|||||||||||||||||+|||+|+++.+|||+++|.|+++++
T Consensus 65 l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~~~Yd~~~~R~~~~~~~ 144 (159)
T 1wyo_A 65 LRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAP 144 (159)
T ss_dssp TTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCSCCCCTTGGGCCCTTSC
T ss_pred HhhhccCCCChHHHHHHHHHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHhCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999988754
No 5
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=100.00 E-value=6.1e-35 Score=229.90 Aligned_cols=76 Identities=74% Similarity=1.259 Sum_probs=74.3
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCC
Q psy12626 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGE 76 (205)
Q Consensus 1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~ 76 (205)
|+||||+++.||||++|||+||++|+|+||+|+|||++|||||||||||||||||+|||+|+++++|||++||.|+
T Consensus 48 l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k~i~v~kLvkgk~qdnleflqW~k~f~d~n~~~~~Yd~~~~R~~~ 123 (123)
T 2qjz_A 48 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQ 123 (123)
T ss_dssp GGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHTSCC
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHHHcCCCCccCHHHHHcCCchhHHHHHHHHHHHHHHcCCCCCCCHHHhhCcC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999874
No 6
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=99.93 E-value=9.4e-27 Score=171.32 Aligned_cols=60 Identities=72% Similarity=1.100 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCc-hHHHHHHHhhhccccC
Q psy12626 138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATEIF 197 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~~-~~~~~I~~ILYaTee~ 197 (205)
++.+|++++++|++++++||+||||||+|||+||+|||+.+..+ +++++|++|||||+|+
T Consensus 2 ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ILYaTeeg 62 (82)
T 3tq7_B 2 QILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEG 62 (82)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHTCCC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhccccC
Confidence 57789999999999999999999999999999999999998766 8999999999999875
No 7
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.1e-25 Score=168.22 Aligned_cols=64 Identities=38% Similarity=0.580 Sum_probs=57.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--------------------C---c-hHHHHHHH
Q psy12626 134 NNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG--------------------E---T-PVIQNILN 189 (205)
Q Consensus 134 ~~~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~--------------------~---~-~~~~~I~~ 189 (205)
..++++.+|++++++|++++++||+||||||+||||||+|||+..+ . . +++++|++
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ 94 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVES 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHH
Confidence 4467899999999999999999999999999999999999999743 1 1 78999999
Q ss_pred hhhccccC
Q psy12626 190 ILYATEIF 197 (205)
Q Consensus 190 ILYaTee~ 197 (205)
|||||||+
T Consensus 95 ILYaTeeG 102 (106)
T 4e61_A 95 ILYATAEG 102 (106)
T ss_dssp HHHHHHHT
T ss_pred HHhccccc
Confidence 99999874
No 8
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=99.88 E-value=7.1e-23 Score=148.45 Aligned_cols=61 Identities=44% Similarity=0.755 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCc-hHHHHHHHhhhccccCc
Q psy12626 138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATEIFT 198 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~~-~~~~~I~~ILYaTee~~ 198 (205)
.+..|+.+..++..++++||+||||||+|||+||+|||+.+++. +++++|++|||+|+|+-
T Consensus 10 kmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ILYat~~~f 71 (75)
T 3mtu_A 10 KMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGF 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHHHHHCBTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCcCC
Confidence 56678889999999999999999999999999999999998766 99999999999998853
No 9
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=86.71 E-value=1.2 Score=32.14 Aligned_cols=33 Identities=36% Similarity=0.547 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRDI 170 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdI 170 (205)
..+.|-+++.+|+..|+.||.||--|=-||+.=
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsT 52 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKAT 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466899999999999999999999999999976
No 10
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.28 E-value=1.6 Score=32.86 Aligned_cols=56 Identities=9% Similarity=0.239 Sum_probs=39.8
Q ss_pred ccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHh
Q psy12626 4 VKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFD 59 (205)
Q Consensus 4 Vkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d 59 (205)
|.|..-...+-++|.+..-+...++||.+.+..+.++.+...|-.-.+.++-.||.
T Consensus 55 id~~~l~~~~~~~n~~~af~~a~~LGi~~ll~peDi~~~~~pD~ksvmtYvs~l~~ 110 (119)
T 2d89_A 55 IDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRA 110 (119)
T ss_dssp SCGGGCCTTCSHHHHHHHHHHHHHHTCCCCSCHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CChhhhcccCHHHHHHHHHHHHHHhCCCcccCHHHHhccCCCcHHHHHHHHHHHHH
Confidence 34554445566788887766669999999999999998865555555555555553
No 11
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.59 E-value=2.4 Score=32.77 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHH-HHHHHhcCccceec-ccccccccccccHHHHHHHHHHHhh
Q psy12626 9 NLEHEYIQNFKIL-QAAFKKMNVDKIVP-IDKLVKGRFQDNFEFLQWFKKFFDV 60 (205)
Q Consensus 9 ~~e~e~i~N~K~L-q~~F~k~~I~k~ip-V~kLvkgk~qdnlEflqWfk~f~d~ 60 (205)
+.-.--+.||.+| +.+|+|+|+.-+-+ |+.++.|+...=--+|.=++.+...
T Consensus 67 ~S~~~K~~NW~~ln~kvl~kl~~~l~~~~i~~i~~~~~Gaie~lL~~L~~~l~~ 120 (127)
T 2ee7_A 67 NSLQQKLSNWGHLNRKVLKRLNFSVPDDVMRKIAQCAPGVVELVLIPLRQRLEE 120 (127)
T ss_dssp SSHHHHHHHHHHHHHHTTGGGTCCCCHHHHHHHHTTCTTTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHhHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 4445668999999 59999999976533 8999999999888888888777653
No 12
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=70.69 E-value=3.5 Score=31.51 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=39.2
Q ss_pred ccccCCChHHHHHHHHHHHHHHHh-cCccceecccccccccccc---cHHHHHHHHHHHh
Q psy12626 4 VKFRTNLEHEYIQNFKILQAAFKK-MNVDKIVPIDKLVKGRFQD---NFEFLQWFKKFFD 59 (205)
Q Consensus 4 Vkf~a~~e~e~i~N~K~Lq~~F~k-~~I~k~ipV~kLvkgk~qd---nlEflqWfk~f~d 59 (205)
|.|..-...+-++|++..-+...+ +||.+.+..+.++.+..-| ++-|+..|+++|-
T Consensus 53 id~~~l~~~~~~~n~~~af~~Ae~~lgip~lL~peD~v~~~~pD~ksvmtYvs~l~~~~~ 112 (128)
T 2d87_A 53 FDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLV 112 (128)
T ss_dssp SCSTTSCSSCHHHHHHHHHHHHHHHHCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHcCccCHHHHHHHHHHHHHHcCCCCcccCHHHHhccCCccHHHHHHHHHHHHHHHh
Confidence 345544456778888877777766 8999999999999887544 4555555555553
No 13
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=70.63 E-value=2.2 Score=31.97 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=39.1
Q ss_pred cccCCChHHHHHHHHHHHHHHHh-cCccceecccccccc-cccccHHHHHHHHHHH
Q psy12626 5 KFRTNLEHEYIQNFKILQAAFKK-MNVDKIVPIDKLVKG-RFQDNFEFLQWFKKFF 58 (205)
Q Consensus 5 kf~a~~e~e~i~N~K~Lq~~F~k-~~I~k~ipV~kLvkg-k~qdnlEflqWfk~f~ 58 (205)
.|..=...+-++|++..-+...+ +||.+.+..+.++.+ .-.-++-|+.-|+++|
T Consensus 54 d~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~peD~~~~~d~ksv~tYvs~l~~~~ 109 (116)
T 1wyl_A 54 EPSELQGLGALEATAWALKVAENELGITPVVSAQAVVAGSDPLGLIAYLSHFHSAF 109 (116)
T ss_dssp CCSSGGGCCHHHHHHHHHHHHHHTTCCCCCSCHHHHHHTSCHHHHHHHHHHHHHHS
T ss_pred CHHHhccCCHHHHHHHHHHHHHHHcCCccccCHHHHhcCCchhHHHHHHHHHHHHc
Confidence 44444445677888887777777 999999999999988 4445666666666554
No 14
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=70.15 E-value=6.9 Score=28.60 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRD 169 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRd 169 (205)
..++..|..++..|+.....+.+|||.|=.|+-+
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888999999999888754
No 15
>1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1
Probab=69.53 E-value=8.5 Score=29.67 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVL 173 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEil 173 (205)
-+++|..+-.-|-..++-=||||+.||+.|+.+..=
T Consensus 8 ~leeL~rer~~Ll~EieKEekek~wyysqlq~l~kR 43 (125)
T 1m5i_A 8 YLEELEKERSLLLADLDKEEKEKDWYYAQLQNLTKR 43 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 356777666667777888899999999999987653
No 16
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.18 E-value=8.9 Score=25.79 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=28.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 135 NSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRD 169 (205)
Q Consensus 135 ~~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRd 169 (205)
...++.+|..+..+|+..+..|+.|-.+.=+-|++
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35578889999999999999999998876555544
No 17
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=66.91 E-value=5 Score=29.65 Aligned_cols=54 Identities=7% Similarity=0.151 Sum_probs=35.6
Q ss_pred cccCCChHHHHHHHHHHHHHHH-hcCccceecccccccccc--cccHHHHHHHHHHH
Q psy12626 5 KFRTNLEHEYIQNFKILQAAFK-KMNVDKIVPIDKLVKGRF--QDNFEFLQWFKKFF 58 (205)
Q Consensus 5 kf~a~~e~e~i~N~K~Lq~~F~-k~~I~k~ipV~kLvkgk~--qdnlEflqWfk~f~ 58 (205)
.|..=...+-++|++..-+... ++||.+.+..+.++.+.. .-++-|+.-|+.+|
T Consensus 50 d~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~~eDv~~~~pD~ksi~tYvs~~~~~f 106 (109)
T 1bkr_A 50 DFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYF 106 (109)
T ss_dssp CGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHcCcCCHHHHHHHHHHHHHHHcCCCccCCHHHccCCCCcHHHHHHHHHHHHHHh
Confidence 4444444566778776555554 899999999999876654 44555555555554
No 18
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=65.90 E-value=5.8 Score=30.17 Aligned_cols=56 Identities=7% Similarity=0.148 Sum_probs=37.6
Q ss_pred cccCCChHHHHHHHHHHHHHHH-hcCccceecccccccccc--cccHHHHHHHHHHHhh
Q psy12626 5 KFRTNLEHEYIQNFKILQAAFK-KMNVDKIVPIDKLVKGRF--QDNFEFLQWFKKFFDV 60 (205)
Q Consensus 5 kf~a~~e~e~i~N~K~Lq~~F~-k~~I~k~ipV~kLvkgk~--qdnlEflqWfk~f~d~ 60 (205)
.|..=...+-++|++...+... ++||.+.++.+.++.+.. .-++-|+.-|+.+|..
T Consensus 54 d~~~l~~~~~~~n~~~af~~Ae~~Lgi~~ll~~eDv~~~~pDeksimtYvs~l~~~~~~ 112 (127)
T 1wyq_A 54 DFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPEDVNVDQPDEKSIITYVATYYHYFSK 112 (127)
T ss_dssp CTTTSCSSCCHHHHHHHHHHHHHTTCCCCCSCTTTSCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHhCcCCHHHHHHHHHHHHHHHcCCCcccCHHHhccCCCcHHHHHHHHHHHHHHhhc
Confidence 3444334456778777666665 799999999999887664 4456666666666543
No 19
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=61.41 E-value=6 Score=29.78 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=38.7
Q ss_pred ccccCCChHHHHHHHHHHHHHHH-hcCccceecccccccc---cccccHHHHHHHHHHHh
Q psy12626 4 VKFRTNLEHEYIQNFKILQAAFK-KMNVDKIVPIDKLVKG---RFQDNFEFLQWFKKFFD 59 (205)
Q Consensus 4 Vkf~a~~e~e~i~N~K~Lq~~F~-k~~I~k~ipV~kLvkg---k~qdnlEflqWfk~f~d 59 (205)
|.|..=...+-++|+++.-+... ++||.+.+..+.++.+ .-.-++-|+.-|+++|.
T Consensus 55 id~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~peD~~~~~~pD~ksimtYvs~l~~~~~ 114 (121)
T 2d88_A 55 IDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFK 114 (121)
T ss_dssp SCTTTSCTTCHHHHHHHHHHHHHHHTCCCCSSCHHHHHHSSCCCHHHHHHHHHHHHHHHS
T ss_pred CCHHHcCccCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHcc
Confidence 34444444566788887766666 5999999999999875 33456666666666653
No 20
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=58.05 E-value=2.7 Score=35.03 Aligned_cols=55 Identities=4% Similarity=0.110 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHh-cCccceeccccccccc--ccccHHHHHHHHHHHhhcCCCCCC
Q psy12626 13 EYIQNFKILQAAFKK-MNVDKIVPIDKLVKGR--FQDNFEFLQWFKKFFDVNNTVADY 67 (205)
Q Consensus 13 e~i~N~K~Lq~~F~k-~~I~k~ipV~kLvkgk--~qdnlEflqWfk~f~d~n~~~~~Y 67 (205)
+-++|.+..-+...+ +||.+.+..+.++.++ -.-++-|+..|+..|-.-.++.+|
T Consensus 188 ~~~~n~~~a~~~a~~~lGi~~~l~peDi~~~~pd~k~i~tyva~l~~~~~~~~~~~~~ 245 (245)
T 1sh5_A 188 TNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPGAQEF 245 (245)
T ss_dssp CHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHHHHHCC--------
T ss_pred CHHHHHHHHHHHHHHhCCCCccCCHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 567788887777775 9999999999988654 477899998888887554444443
No 21
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=48.67 E-value=11 Score=31.59 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=42.8
Q ss_pred ccccCCChHHHHHHHHHHHHHHHh-cCccceeccccccccc-c--cccHHHHHHHHHHHhh
Q psy12626 4 VKFRTNLEHEYIQNFKILQAAFKK-MNVDKIVPIDKLVKGR-F--QDNFEFLQWFKKFFDV 60 (205)
Q Consensus 4 Vkf~a~~e~e~i~N~K~Lq~~F~k-~~I~k~ipV~kLvkgk-~--qdnlEflqWfk~f~d~ 60 (205)
|.|..-...+-..|.+..-+...+ +||.+.+..+.++.|. . .-++-|+..|+.+|-.
T Consensus 186 id~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDiv~~~~pD~k~imtyva~l~~~~~~ 246 (254)
T 1wku_A 186 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAG 246 (254)
T ss_dssp CCGGGCCTTCHHHHHHHHHHHHHHHSCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHhhc
Confidence 445554556778898887777665 9999999999998874 2 5678888888877754
No 22
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.17 E-value=68 Score=20.80 Aligned_cols=26 Identities=12% Similarity=0.326 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERD 161 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERD 161 (205)
..+++.|..++.+|+..++.|.++-+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888877643
No 23
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.15 E-value=40 Score=23.98 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGL--------EKERDFYF 164 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~L--------EkERDFYF 164 (205)
..++++|+.++.+|+-.+|.+ ++-||+|=
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777776666663 45678874
No 24
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=39.79 E-value=7.6 Score=29.08 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=27.0
Q ss_pred HHHHHHHHHH-HHHhcCccceecccccccccc--cccHHHHHHHHHH
Q psy12626 14 YIQNFKILQA-AFKKMNVDKIVPIDKLVKGRF--QDNFEFLQWFKKF 57 (205)
Q Consensus 14 ~i~N~K~Lq~-~F~k~~I~k~ipV~kLvkgk~--qdnlEflqWfk~f 57 (205)
-++|++.--+ |-+++||.+.+..+.++.++. .-++-|+..|+++
T Consensus 64 ~~~n~~~af~~Ae~~lgi~~ll~~eDv~~~~pD~ksvmtYvs~l~~~ 110 (118)
T 1bhd_A 64 PIERLEHAFSKAQTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSLFEV 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSCHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccCHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 3455554333 334999999999999886643 3344554444443
No 25
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=39.44 E-value=15 Score=28.31 Aligned_cols=18 Identities=22% Similarity=0.600 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHhhcCCC
Q psy12626 47 NFEFLQWFKKFFDVNNTV 64 (205)
Q Consensus 47 nlEflqWfk~f~d~n~~~ 64 (205)
=.|+|+|+.++.+.||..
T Consensus 12 R~elL~WiN~~L~~n~~k 29 (127)
T 2qjx_A 12 RTELLTWLNGLLNLNYKK 29 (127)
T ss_dssp HHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHHHHcCCccH
Confidence 369999999999999875
No 26
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=38.22 E-value=1e+02 Score=23.85 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccCchHHHHHHHhhhccc
Q psy12626 139 VDELNSQMMDLKLTVDGLEKE-RDFYFGKLRDIEVLCQEHEGETPVIQNILNILYATE 195 (205)
Q Consensus 139 i~~L~~q~~elk~~v~~LEkE-RDFYF~KLRdIEilcQe~~~~~~~~~~I~~ILYaTe 195 (205)
.+.+.+++..+.-.+...=.. .+---.=|.-||.+|.+.+.-.+.+..|+..||..|
T Consensus 73 ~~~~~~~l~~~~~ll~~~~~~~~~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~D 130 (168)
T 3d3m_A 73 LEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDME 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcc
Confidence 344455555554444443321 111233488899999864432278999999999864
No 27
>2zop_A Putative uncharacterized protein TTHB164; all alpha proteins, plasmid, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=38.15 E-value=15 Score=27.42 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=13.9
Q ss_pred ccHHHHHHHHHHHhhcC
Q psy12626 46 DNFEFLQWFKKFFDVNN 62 (205)
Q Consensus 46 dnlEflqWfk~f~d~n~ 62 (205)
.-|+|+.|+|+|-++-.
T Consensus 96 e~La~~~WlKRfAea~l 112 (114)
T 2zop_A 96 EVLAAAEWFKRFAQALI 112 (114)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46899999999987643
No 28
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=36.31 E-value=15 Score=33.66 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=43.3
Q ss_pred ccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHH
Q psy12626 4 VKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFF 58 (205)
Q Consensus 4 Vkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~ 58 (205)
|.|..-.+.+-.+|.+..-+...++||.+.+..+.++.|+..-++-|+.-|+.+|
T Consensus 199 i~~~~l~~~~~~~n~~~a~~~a~~lGi~~~l~peDi~~~~~k~v~tyva~l~~~~ 253 (506)
T 1pxy_A 199 CDPATLDAKDPLERAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAFVAQIFHER 253 (506)
T ss_dssp CCGGGGGCCSHHHHHHHHHHHHHHTTCCCCCCHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccccCCcCCHHHHHHHHHHHHHHcCCCCcCCHHHHhcCChhHHHHHHHHHhhhc
Confidence 3455555567889999888888899999999999999998877777776555554
No 29
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=35.37 E-value=34 Score=24.18 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDF 162 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDF 162 (205)
.++++-|+++|.||...+..||.|-..
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~ 40 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTL 40 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999764
No 30
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=34.89 E-value=30 Score=20.90 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLE 157 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LE 157 (205)
.++|++|..|..-|...+-.||
T Consensus 13 qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHHHHHHHHHHHHHHHHhcC
Confidence 3456666666666666655544
No 31
>2oeb_A Hypothetical protein; unknown function, PSI-2, MCSG, struc genomics, protein structure initiative, midwest center for structural genomics; 1.66A {Archaeoglobus fulgidus} SCOP: a.70.2.1
Probab=34.56 E-value=21 Score=28.33 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=14.7
Q ss_pred ccHHHHHHHHHHHhhcCC
Q psy12626 46 DNFEFLQWFKKFFDVNNT 63 (205)
Q Consensus 46 dnlEflqWfk~f~d~n~~ 63 (205)
.-|+|+.|+|+|-++-..
T Consensus 135 E~La~l~WlKRfAea~l~ 152 (155)
T 2oeb_A 135 EALSILNWIKKFAKAMLE 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 458999999999887654
No 32
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.20 E-value=66 Score=18.82 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEK 158 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEk 158 (205)
.+++..|+.-+++|+..++.||.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888875
No 33
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=31.01 E-value=20 Score=33.01 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=43.0
Q ss_pred ccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHH
Q psy12626 4 VKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFF 58 (205)
Q Consensus 4 Vkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~ 58 (205)
|.|.+-.+.+..+|.+..-+...++||.+.+..+.++.|...-++-|+.-|+..|
T Consensus 208 i~~~~l~~~~~~~n~~~a~~~a~~lgi~~~l~peDi~~~~~k~il~yva~l~~~~ 262 (513)
T 1rt8_A 208 CSRAPLQTTDVLQRAEQVLQNAEKLDCRKYLTPTAMVAGNPKLNLAFVAHLFNTH 262 (513)
T ss_dssp CCSGGGGCCCHHHHHHHHHHHHHTTTCCCSCCHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccCCCCccCHHHHHHHHHHHHHHcCCCccCCHHHhcCCCHHHHHHHHHHHHhhh
Confidence 3455555567889999998889999999999999999998877887775444443
No 34
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.60 E-value=81 Score=28.21 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDFYFGKLR 168 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLR 168 (205)
.+++.+|.++..+++..++.++.|..=--.+|+
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554333333333
No 35
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=29.59 E-value=93 Score=22.24 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDF 162 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDF 162 (205)
...+.+|.++...|+..|+.|++|=++
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888999999999999998553
No 36
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=28.61 E-value=19 Score=21.35 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=7.0
Q ss_pred HHHHHHHHH
Q psy12626 48 FEFLQWFKK 56 (205)
Q Consensus 48 lEflqWfk~ 56 (205)
=+|++|+++
T Consensus 12 kdFv~WL~n 20 (31)
T 3c5t_B 12 RLFIEWLKN 20 (31)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 479999973
No 37
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.61 E-value=46 Score=24.63 Aligned_cols=16 Identities=44% Similarity=0.578 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12626 146 MMDLKLTVDGLEKERD 161 (205)
Q Consensus 146 ~~elk~~v~~LEkERD 161 (205)
+..++..++.||.||+
T Consensus 14 ~~~lr~ei~~Le~E~~ 29 (100)
T 1go4_E 14 ADTLRLKVEELEGERS 29 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 38
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=27.86 E-value=62 Score=28.02 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCC
Q psy12626 18 FKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNT 63 (205)
Q Consensus 18 ~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~ 63 (205)
.+-|.+.|..+|.+..|...-|-.=...|=....+|+.++-|-||.
T Consensus 18 ~~~i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~idp~~~ 63 (315)
T 2ve7_A 18 IRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYE 63 (315)
T ss_dssp HHHHHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTSTTCC
T ss_pred HHHHHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 4567788999998877776666666667888999999999887774
No 39
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=27.25 E-value=34 Score=28.26 Aligned_cols=45 Identities=4% Similarity=0.065 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHH-HhcCccceecccccccccc--cccHHHHHHHHHHH
Q psy12626 14 YIQNFKILQAAF-KKMNVDKIVPIDKLVKGRF--QDNFEFLQWFKKFF 58 (205)
Q Consensus 14 ~i~N~K~Lq~~F-~k~~I~k~ipV~kLvkgk~--qdnlEflqWfk~f~ 58 (205)
-.+|.+..-+.- +++||.+.+..+.++.++. .-++-|+..|+.+|
T Consensus 192 ~~~n~~~a~~~A~~~lGi~~~l~peDi~~~~pD~k~i~tyva~l~~~~ 239 (246)
T 1dxx_A 192 ATQRLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQVL 239 (246)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCHHHHSSSSCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCCCccCCHHHhhcCCCcHHHHHHHHHHHHHHc
Confidence 345655444433 4899999999999999988 78888888777665
No 40
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=27.14 E-value=1.2e+02 Score=23.94 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHhhhccc
Q psy12626 137 SRVDELNSQMMDLKLTVDGL----EKERDFYFGKLRDIEVLCQEHEGETPVIQNILNILYATE 195 (205)
Q Consensus 137 ~~i~~L~~q~~elk~~v~~L----EkERDFYF~KLRdIEilcQe~~~~~~~~~~I~~ILYaTe 195 (205)
+..+.+.+++..+...+..+ ..+.+ =|.-||.+|.+....-+.+..|+..||..|
T Consensus 77 ~~~~a~~~~i~~~~~ll~~~~~~~~~q~~----lL~ale~~~~~~~~~~~~~~~il~~LYd~D 135 (182)
T 3jui_A 77 RYCALLLPLLKAWSPVFRNYIKRAADHLE----ALAAIEDFFLEHEALGISMAKVLMAFYQLE 135 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHHH----HHHHHHHHHHHCGGGGGGHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHHhCchHHHHHHHHHHHHhhcc
Confidence 34556666666666655543 23333 488899999654322278999999999974
No 41
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.81 E-value=88 Score=19.65 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKE 159 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkE 159 (205)
+.+|+.-.+++++|+..+..||..
T Consensus 15 drEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446667777788888777777754
No 42
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=26.72 E-value=27 Score=23.74 Aligned_cols=15 Identities=40% Similarity=0.264 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhccc
Q psy12626 165 GKLRDIEVLCQEHEG 179 (205)
Q Consensus 165 ~KLRdIEilcQe~~~ 179 (205)
.|||.||+-|=+..+
T Consensus 16 ~klR~IEvk~me~rD 30 (61)
T 2e62_A 16 QKRRRIEVALIEYRE 30 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 699999999987554
No 43
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.58 E-value=99 Score=18.00 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy12626 138 RVDELNSQMMDLKLTVDGL 156 (205)
Q Consensus 138 ~i~~L~~q~~elk~~v~~L 156 (205)
+|..|.+++..|+..+..|
T Consensus 3 eiaalkqeiaalkkeiaal 21 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444555544444444443
No 44
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=25.90 E-value=93 Score=23.55 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHH
Q psy12626 10 LEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKF 57 (205)
Q Consensus 10 ~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f 57 (205)
.+.|-..|.+..-+.=.|+||...+-.+-++.|+..=++-|+.-|..+
T Consensus 66 ~~~d~~~Na~~ais~ArklG~~~~l~pEDIve~~pK~ilt~va~l~~~ 113 (124)
T 1wjo_A 66 TEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGR 113 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCSCCCCHHHHHHTCTTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccCHHHHhcCcchhhHHHHHHHHHH
Confidence 578889999988888899999999999999999999999988655544
No 45
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=25.49 E-value=1.7e+02 Score=20.25 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q psy12626 145 QMMDLKLTVDGL-------EKERDFYFGKLRDIEVLC 174 (205)
Q Consensus 145 q~~elk~~v~~L-------EkERDFYF~KLRdIEilc 174 (205)
-.+.|+...++| -.||+|+=.||+.-=-++
T Consensus 27 sNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv 63 (70)
T 3brv_B 27 SNQILRERCEELLHFQASQREEKEFLMCKFQEARKLV 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344556666666 569999999998754444
No 46
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=25.01 E-value=88 Score=20.36 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEK 158 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEk 158 (205)
..++.+|..++.+|...|+.|..
T Consensus 3 ~aki~~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 3 NAKADQASSDAQTANAKADQASN 25 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777666666665
No 47
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=22.94 E-value=1.7e+02 Score=19.90 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKL 167 (205)
Q Consensus 137 ~~i~~L~~q~~elk~~v~~LEkERDFYF~KL 167 (205)
+++.+.-++.++||..+--++.|=.+|=.++
T Consensus 3 ~Elr~iLqERNELKa~vf~lqeEL~yY~~e~ 33 (65)
T 1yhn_B 3 EEFEQILQERNELKAKVFLLKEELAYFQREL 33 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4677888899999999999999999987765
No 48
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.61 E-value=2e+02 Score=21.44 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12626 145 QMMDLKLTVDGLEKERDFYFGKLRDIEVLCQE 176 (205)
Q Consensus 145 q~~elk~~v~~LEkERDFYF~KLRdIEilcQe 176 (205)
++..|+..+..|-.+++=|=-+||+||.-=.+
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 45566677777788888888899999865333
No 49
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=21.73 E-value=1.1e+02 Score=21.08 Aligned_cols=50 Identities=8% Similarity=0.160 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHHHHHhcCccc-eecccccc-cccccccHHHHHHHHHHHh
Q psy12626 9 NLEHEYIQNFKILQAAFKKMNVDK-IVPIDKLV-KGRFQDNFEFLQWFKKFFD 59 (205)
Q Consensus 9 ~~e~e~i~N~K~Lq~~F~k~~I~k-~ipV~kLv-kgk~qdnlEflqWfk~f~d 59 (205)
....+|++.+++-.+. .-|.-.. .++|..+. .+.|.|---|...||++|.
T Consensus 45 ~s~~~~~~~~Rl~~A~-~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G 96 (108)
T 3mn2_A 45 YSPMAFAKRVRLQHAH-NLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMFG 96 (108)
T ss_dssp SCHHHHHHHHHHHHHH-HHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHH-HHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHHHHHC
Confidence 4568999999976544 3333332 26777765 5779999999999999973
No 50
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.65 E-value=1.1e+02 Score=20.01 Aligned_cols=23 Identities=26% Similarity=0.357 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy12626 137 SRVDELNSQMMDLKLTVDGLEKE 159 (205)
Q Consensus 137 ~~i~~L~~q~~elk~~v~~LEkE 159 (205)
.++..|..+..+|+..+..|+.|
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666555
No 51
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=21.51 E-value=1.7e+02 Score=18.89 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHhh
Q psy12626 148 DLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGETPVIQNILNIL 191 (205)
Q Consensus 148 elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~~~~~~~I~~IL 191 (205)
+-+..++.||++ ||.+--=.+..++++|-+-.|..||
T Consensus 11 ~~Rkk~eeler~-------lrk~kk~iKklEdeNPWLGNIkGIl 47 (50)
T 1a92_A 11 SGRKKLEELERD-------LRKLKKKIKKLEEDNPWLGNIKGII 47 (50)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHhhhccCCchhhhhhhh
Confidence 336666666653 7777777777776667777777775
No 52
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.02 E-value=1.1e+02 Score=21.46 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERD 161 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERD 161 (205)
...+.+|..+...|+..|+.|++|=+
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888888843
No 53
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.90 E-value=1.8e+02 Score=18.96 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKERDF 162 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkERDF 162 (205)
.+++..|..+..+|+..+..|..|-..
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666667766666543
No 54
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=20.81 E-value=41 Score=21.21 Aligned_cols=9 Identities=22% Similarity=0.863 Sum_probs=7.4
Q ss_pred HHHHHHHHH
Q psy12626 48 FEFLQWFKK 56 (205)
Q Consensus 48 lEflqWfk~ 56 (205)
-+|++|+.+
T Consensus 20 kdFv~WL~~ 28 (42)
T 2b4n_A 20 QDFVNWLLA 28 (42)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 489999985
No 55
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=20.68 E-value=2.4e+02 Score=23.86 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy12626 141 ELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE 180 (205)
Q Consensus 141 ~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~ 180 (205)
++..--.++...+..+++.|+.|+..+..|=--||+.++.
T Consensus 198 ~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~ 237 (320)
T 3m3w_A 198 EAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQ 237 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444456788999999999999998887777777777764
No 56
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.57 E-value=1.2e+02 Score=19.69 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy12626 136 SSRVDELNSQMMDLKLTVDGLEKE 159 (205)
Q Consensus 136 ~~~i~~L~~q~~elk~~v~~LEkE 159 (205)
..++..|..+..+|+..+..|+.|
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666
Done!