RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12626
(205 letters)
>gnl|CDD|227542 COG5217, BIM1, Microtubule-binding protein involved in cell cycle
control [Cell division and chromosome partitioning /
Cytoskeleton].
Length = 342
Score = 109 bits (274), Expect = 8e-29
Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 10/189 (5%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
V+F E+++ N KILQ F +DK V + LV+ + QDN EFLQW K +
Sbjct: 49 DSLVRFPWIAEYKHPGNGKILQLLFSDYGIDKAVLVLVLVRCKLQDNLEFLQWLKDHWVR 108
Query: 61 NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPR- 119
N YD R G S R I P A R ++ KS +
Sbjct: 109 NLGHISYDRNARRLG--RTPKSTRE-LIEWIRSLGIPISAIRELSKGVASCKSLSTIHSS 165
Query: 120 AGLNSRGTPAGRVDN------NSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVL 173
N AG D + LN ++ T+ LE ER FYF KLR IE+L
Sbjct: 166 FPQNFVKNTAGTHDYLRAMQACQEFIGSLNIKLYFPVDTLVKLEMERAFYFNKLRSIEIL 225
Query: 174 CQEHEGETP 182
+ + E P
Sbjct: 226 VETLKREGP 234
>gnl|CDD|202587 pfam03271, EB1, EB1-like C-terminal motif. This motif is found at
the C-terminus of proteins that are related to the EB1
protein. The EB1 proteins contain an N-terminal CH
domain pfam00307. The human EB1 protein was originally
discovered as a protein interacting with the C-terminus
of the APC protein. This interaction is often disrupted
in colon cancer, due to deletions affecting the APC
C-terminus. Several EB1 orthologues are also included in
this family. The interaction between EB1 and APC has
been shown to have a potent synergistic effect on
microtubule polymerisation. Neither of EB1 or APC alone
has this effect. It is thought that EB1 targets APC to
the + ends of microtubules, where APC promotes
microtubule polymerisation. This process is regulated by
APC phosphorylation by Cdc2, which disrupts APC-EB1
binding. Human EB1 protein can functionally substitute
for the yeast EB1 homologue Mal3. In addition, Mal3 can
substitute for human EB1 in promoting microtubule
polymerisation with APC.
Length = 43
Score = 67.2 bits (165), Expect = 2e-15
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 155 GLEKERDFYFGKLRDIEVLCQEHEGET----PVIQNILNILYA 193
GLEKERDFYF KLRDIE+LCQE + +++ I ILYA
Sbjct: 1 GLEKERDFYFNKLRDIEILCQEAQESENSPEQLVKKIQEILYA 43
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain. The CH domain is
found in both cytoskeletal proteins and signal
transduction proteins. The CH domain is involved in
actin binding in some members of the family. However in
calponins there is evidence that the CH domain is not
involved in its actin binding activity. Most member
proteins have from two to four copies of the CH domain,
however some proteins such as calponin have only a
single copy.
Length = 104
Score = 36.9 bits (86), Expect = 0.001
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 5 KFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLV-KGRFQDNFEFLQWFKKFF 58
K N + L+ A KK+ V K++ + LV G + L + F
Sbjct: 49 KVNKNRFDKLENLNLALEFAEKKLGVPKVLEPEDLVEDGNEKLVLTLLAQLFRRF 103
>gnl|CDD|218130 pfam04527, Retinin_C, Drosophila Retinin like protein. Family of
Drosophila proteins related to the C-terminal region of
the Drosophila Retinin protein. Conserved region is
found towards the C-terminus of the member proteins.
Length = 65
Score = 34.0 bits (78), Expect = 0.005
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 87 SATQIH---KRTTPAVAP--RPVAPKQPVAKSTAAAPRA 120
S+T +H TP VAP + PV K+TAAAP
Sbjct: 25 SSTVVHNKAPVITPVVAPAVKTTVVSAPVVKTTAAAPVV 63
>gnl|CDD|222607 pfam14225, MOR2-PAG1_C, Cell morphogenesis C-terminal. This
family is the conserved C-terminal region of proteins
that are involved in cell morphogenesis.
Length = 258
Score = 32.1 bits (74), Expect = 0.13
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 8 TNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQD---NFEFLQ 52
T EHE+++ ++L K+++D + L+ G+ FE LQ
Sbjct: 18 TIHEHEFLEALRLLNKFLDKIDLDDPDVVQCLISGQPPKWEGKFEGLQ 65
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 30.2 bits (68), Expect = 0.51
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 72 ARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRA 120
A G +A G + ++ PA A + APK A + AAAP A
Sbjct: 103 ASGADASGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPA 151
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 30.6 bits (69), Expect = 0.55
Identities = 13/51 (25%), Positives = 16/51 (31%)
Query: 100 APRPVAPKQPVAKSTAAAPRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLK 150
A P P A A P P D + V EL + DL+
Sbjct: 911 ASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPAAVAELRETLADLR 961
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 30.7 bits (69), Expect = 0.64
Identities = 11/48 (22%), Positives = 15/48 (31%)
Query: 77 AMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRAGLNS 124
A+ G + + T A P P P P A R + S
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
Score = 28.4 bits (63), Expect = 3.7
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 2/82 (2%)
Query: 69 PVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAP--RAGLNSRG 126
P G + A+ TP A P P P+ + + A R
Sbjct: 394 PFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQ 453
Query: 127 TPAGRVDNNSSRVDELNSQMMD 148
PA + D+ + +D
Sbjct: 454 PPAPATEPAPDDPDDATRKALD 475
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 30.6 bits (69), Expect = 0.64
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 97 PAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPAGR 131
PA AP+P AP+ V T A A ++ A R
Sbjct: 581 PAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAAR 615
>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 30.1 bits (68), Expect = 0.77
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 95 TTPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPAGRVDNNSSRV 139
TT V P PV K A AG R A ++ S RV
Sbjct: 238 TTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSESTSIRV 282
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 29.9 bits (67), Expect = 0.97
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 95 TTPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPAGRVDNNS 136
+T A AP P AP P + AP+ + P D N+
Sbjct: 49 STAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNA 90
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 29.8 bits (67), Expect = 1.0
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 73 RGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPAG 130
R G++ G + +A + + A AP AP + AA A + A
Sbjct: 364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAA 421
Score = 27.1 bits (60), Expect = 8.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 96 TPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPA 129
PA A P AP A + AA A +R +PA
Sbjct: 396 APAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA 429
>gnl|CDD|221598 pfam12484, PE_PPE_C, Polymorphic PE/PPE proteins C terminal. This
domain family is found in bacteria, and is approximately
90 amino acids in length. The family is found in
association with pfam00823. There is a conserved SVP
sequence motif. There is a single completely conserved
residue W that may be functionally important. The
proteins in this family are PE/PPE proteins implicated
in immunostimulation and virulence.
Length = 81
Score = 27.7 bits (62), Expect = 1.4
Identities = 12/37 (32%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 95 TTPAVAPRPVAPKQPVAKSTAAAPR-AGLNSRGTPAG 130
A A A P A AAA AG G P
Sbjct: 21 AAAAPAVSAAAAALPGAGVAAAAEAAAGAVLPGMPGA 57
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 29.5 bits (66), Expect = 1.5
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 24/127 (18%)
Query: 20 ILQAAFKKMNVDKIVP------IDKLVKGRFQDNFE-FLQWFKKFFDVNNTVADYD---- 68
ILQ ++ + K++ +DK V R + F+ FL W K+ VN +
Sbjct: 796 ILQQPIEREQMQKLLATGKTDLLDKFVSMRTRRAFKAFLAWDKEAGKVNFEFEPRESKFP 855
Query: 69 ---PVGARGGEAMGNGSV----------RSISATQIHKRTTPAVAPRPVAPKQPVAKSTA 115
A+ G A + +A ++ +T A PR A K+ +
Sbjct: 856 PRKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAAG 915
Query: 116 AAPRAGL 122
P A L
Sbjct: 916 LKPSAAL 922
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 29.2 bits (66), Expect = 1.7
Identities = 17/61 (27%), Positives = 20/61 (32%)
Query: 70 VGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPA 129
VG G A G G S+ + PA P AP P AAAP +
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 130 G 130
Sbjct: 648 A 648
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 29.1 bits (65), Expect = 1.7
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 95 TTPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPAGRV 132
T AP+ A PV ++ A A + G AG V
Sbjct: 200 ATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNV 237
>gnl|CDD|226450 COG3941, COG3941, Mu-like prophage protein [General function
prediction only].
Length = 633
Score = 28.7 bits (64), Expect = 2.4
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 64 VADYDPVGARGGEAMGNGSVRSISATQIHKRT-TPAVAPRPVAPKQPVAKSTAAAPRAGL 122
V P GA G ++ + K T T RP K+ V A GL
Sbjct: 408 VVTLIPRGAGRGSGGSETQRVFVTGRPVPKGTSTRESPRRPAQRKRGVPPRRKAGKAGGL 467
Query: 123 NSRGTPAG 130
+R PA
Sbjct: 468 AARSLPAL 475
>gnl|CDD|216687 pfam01763, Herpes_UL6, Herpesvirus UL6 like. This family consists
of various proteins from the herpesviridae that are
similar to herpes simplex virus type I UL6 virion
protein. UL6 is essential for cleavage and packaging of
the viral genome.
Length = 556
Score = 28.4 bits (64), Expect = 2.7
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 152 TVDGLEKERDFYFGKLRDIEVLCQEHEGET 181
T++ L++E + KLR++E E
Sbjct: 377 TIEDLKEENEDLLKKLRELESELSRLREEA 406
>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and
multimerization region of GCN4 and related proteins.
Basic leucine zipper (bZIP) transcription factors act in
networks of homo- and hetero-dimers in the regulation in
a diverse set of cellular pathways. Classical leucine
zippers have alpha helices with leucine residues 7 amino
acids apart, which stabilize dimerization with a
parallel leucine zipper domain. Dimerization creates a
pair of basic regions that bind DNA and undergo
conformational change. GCN4 was identified in
Saccharomyces cerevisiae from mutations in a deficiency
in activation with the general amino acid control
pathway. GCN4 encodes a trans-activator of amino acid
biosynthetic genes containing 2 acidic activation
domains and a C-terminal bZIP domain, comprised of a
basic alpha-helical DNA-binding region and a coiled-coil
dimerization region.
Length = 54
Score = 26.1 bits (58), Expect = 2.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 111 AKSTAAAPRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKE 159
A++ AA R SR R+ +V+EL S+ DL+ VD L+K
Sbjct: 8 ARNREAARR----SRARKMERMKQLEDKVEELTSENSDLEDEVDRLKKA 52
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 28.3 bits (64), Expect = 3.8
Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 65 ADYDPVGARGGEAMGNGS--------VRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAA 116
ADY P A + + P A P AP +P A + AA
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
Query: 117 APRA 120
A A
Sbjct: 94 AAPA 97
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 28.1 bits (62), Expect = 4.3
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 88 ATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPAGRVDN 134
+ Q ++ T A P+P + A A + S G AG V N
Sbjct: 381 SAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSN 427
>gnl|CDD|223010 PHA03215, PHA03215, nuclear protein UL24; Provisional.
Length = 262
Score = 27.6 bits (61), Expect = 4.4
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 68 DPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRAG 121
+P R G G RS + P V P AP++P A T + R G
Sbjct: 192 EPRTTRRGRRRGARRPRSRRRPR-GGAAGPPVPAEPAAPERPPADPTPTSARGG 244
>gnl|CDD|148437 pfam06825, HSBP1, Heat shock factor binding protein 1. Heat shock
factor binding protein 1 (HSBP1) appears to be a
negative regulator of the heat shock response.
Length = 54
Score = 25.3 bits (56), Expect = 5.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 130 GRVDNNSSRVDELNSQMMDL 149
++D S R+DEL + DL
Sbjct: 28 SKIDEMSKRIDELEKSINDL 47
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 27.2 bits (60), Expect = 5.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 95 TTPAVAPRPVAPKQPVAKSTAAAPRAGLN--SRGTPA 129
TP+ P + P +T AAP+AG + GTPA
Sbjct: 222 PTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPA 258
>gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional.
Length = 607
Score = 27.4 bits (60), Expect = 6.8
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 131 RVDNNSSRVDELNSQMMDLKLTVDGLEKERDF---YFGKLRDIEVLCQEHEGE--TPVIQ 185
+VD +R D + Q+ DL + +D +++ DF Y L I L E E TP+ Q
Sbjct: 129 KVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQ 188
Query: 186 NILNILYATEI 196
I++ + A ++
Sbjct: 189 AIVDHVPAPDV 199
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 27.3 bits (60), Expect = 7.5
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 69 PVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTP 128
G +G + + + ++ P+ AP +P+ P + A PR+G+ R P
Sbjct: 399 TPGTQGPQGTAPAAGMT-PSSAAPATPAPSAAP---SPRVPWDDAPPAPPRSGIPPRPAP 454
Query: 129 A--------GRVDNNSSRVD 140
G D+ +S D
Sbjct: 455 RMPEASPVPGAPDSVASASD 474
>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor. The Pfam entry
includes the basic region and the leucine zipper region.
Length = 64
Score = 25.0 bits (55), Expect = 8.4
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 131 RVDNNSSRVDELNSQMMDLKLTVDGLEKERD 161
++ +V EL ++ L+ ++ L+KE
Sbjct: 27 YIEELEEKVKELEAENKTLRSELERLKKECA 57
>gnl|CDD|217692 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase
family, NAD binding domain. The UDP-glucose/GDP-mannose
dehydrogenaseses are a small group of enzymes which
possesses the ability to catalyze the NAD-dependent
2-fold oxidation of an alcohol to an acid without the
release of an aldehyde intermediate.
Length = 188
Score = 26.4 bits (59), Expect = 8.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 120 AGLNSRGTPAGRVDNNSSRVDELNS 144
L G VD N S++D+LN+
Sbjct: 17 VCLAEIGHDVVGVDINQSKIDKLNN 41
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr;
Provisional.
Length = 1490
Score = 26.8 bits (59), Expect = 9.8
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 94 RTTPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPAGRVDNNSSRVDELNSQMM 147
R T + RP A + S P G+ S P G S RV EL+ +M+
Sbjct: 479 RETGILTARPGA-QLLAVTSGGTIPDRGMYSVLLPEGEEQAGSRRVGELDEEMV 531
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,416,597
Number of extensions: 968846
Number of successful extensions: 1149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1133
Number of HSP's successfully gapped: 42
Length of query: 205
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 113
Effective length of database: 6,857,034
Effective search space: 774844842
Effective search space used: 774844842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)