RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12626
(205 letters)
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton,
acetylation, cell cycle, cell division, cytoplasm,
mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP:
a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A
3gjo_A 1yib_A 1yig_A
Length = 268
Score = 201 bits (513), Expect = 2e-65
Identities = 102/196 (52%), Positives = 127/196 (64%), Gaps = 4/196 (2%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
+K+VKF+ LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD
Sbjct: 58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117
Query: 61 NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRA 120
N DYDPV AR G+ A K+ + + P P + A
Sbjct: 118 NYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGP 177
Query: 121 GLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE 180
G+ + G N EL Q+ LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE
Sbjct: 178 GVVRKNPGVG---NGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGE 234
Query: 181 -TPVIQNILNILYATE 195
PV+Q I++ILYAT+
Sbjct: 235 NDPVLQRIVDILYATD 250
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein,
cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A
{Schizosaccharomyces pombe}
Length = 145
Score = 126 bits (318), Expect = 1e-37
Identities = 36/89 (40%), Positives = 53/89 (59%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
+K+V F N E++YI N+K+LQ F K +DK+V ++L + + QDN EF+QW K+F+D
Sbjct: 48 LKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQ 107
Query: 61 NNTVADYDPVGARGGEAMGNGSVRSISAT 89
DYD + RG N V + SA
Sbjct: 108 YYPGGDYDALARRGNRGPANTRVMNSSAG 136
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3;
CH domain, microtubule-binding, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 159
Score = 124 bits (313), Expect = 1e-36
Identities = 52/89 (58%), Positives = 66/89 (74%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
+++VKF+ LEHEYI NFK+LQAAFKKM VDKI+P++KLVKG+FQDNFEF+QWFKKFFD
Sbjct: 65 LRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDA 124
Query: 61 NNTVADYDPVGARGGEAMGNGSVRSISAT 89
N DY+P+ AR G+ +
Sbjct: 125 NYDGKDYNPLLARQGQDVAPPPNPGDQIF 153
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin
homology domain, microtubule plus END, +TIP, protein
binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A
1ueg_A 3co1_A 1v5k_A
Length = 123
Score = 123 bits (309), Expect = 2e-36
Identities = 56/76 (73%), Positives = 65/76 (85%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
+K+VKF+ LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD
Sbjct: 48 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 107
Query: 61 NNTVADYDPVGARGGE 76
N DYDPV AR G+
Sbjct: 108 NYDGKDYDPVAARQGQ 123
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A
{Saccharomyces cerevisiae}
Length = 127
Score = 122 bits (307), Expect = 3e-36
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
M RVKF E+E+ N+KILQ+ F + ++K V +DKL++ +FQDN EFLQW KK +
Sbjct: 52 MNRVKFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFLQWLKKHWIR 111
Query: 61 NNTVADYDPVGARGGE 76
+ + YDP R
Sbjct: 112 HKDESVYDPDARRKYR 127
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain,
protein-protein interaction, microtubule BIN
cytoskeleton, protein binding; 2.30A {Homo sapiens}
Length = 82
Score = 91.9 bits (228), Expect = 8e-25
Identities = 43/60 (71%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Query: 137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE-TPVIQNILNILYATE 195
+++ ELN Q++DLKLTVDGLEKERDFYF KLRDIE++CQEHE E +PVI I+ ILYATE
Sbjct: 1 AQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATE 60
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family
member 1; tropomysoin, overlap complex, coiled-coils,
contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB:
3mud_C*
Length = 75
Score = 90.0 bits (223), Expect = 3e-24
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 129 AGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE-TPVIQNI 187
+D ++ L + + E ++DFYFGKLR+IE++CQE+EGE PV+Q I
Sbjct: 1 GASMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRI 60
Query: 188 LNILYATE 195
++ILYAT+
Sbjct: 61 VDILYATD 68
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation,
mitosis, K phosphorylation, mitotic spindle,
microtubules, cell cycle; 2.45A {Saccharomyces
cerevisiae}
Length = 106
Score = 81.9 bits (201), Expect = 1e-20
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 27/103 (26%)
Query: 117 APRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQE 176
P L + + + + LN ++ K TV LE ER+FYF KLRDIE+L
Sbjct: 1 GPLGSLVA---IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57
Query: 177 HE------------------------GETPVIQNILNILYATE 195
+ ++ + +ILYAT
Sbjct: 58 TQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYATA 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.003
Identities = 31/233 (13%), Positives = 58/233 (24%), Gaps = 98/233 (42%)
Query: 5 KFRTNLEHEYIQNFKILQAAFKKMNVDKIV--P--------------------IDKLVKG 42
F N + + +Q+ ++ K +D I+ + K V+
Sbjct: 28 AFVDNFDCKDVQDM--PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 43 RFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPR 102
+ N++FL P I A
Sbjct: 86 VLRINYKFL--MSPIKTEQR-----QPSMMT---------RMYIEQRDRLYNDNQVFAKY 129
Query: 103 PVAPKQPVAKSTAAAPRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLK----LTVDGLEK 158
V SR P +L +++L+ + +DG+
Sbjct: 130 NV-------------------SRLQP----------YLKLRQALLELRPAKNVLIDGV-- 158
Query: 159 ERDFYFGK-------LRDIEVLC------------QEHEGETPVIQNILNILY 192
GK +V C + ET V++ + +LY
Sbjct: 159 ---LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEMLQKLLY 207
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.22
Identities = 39/268 (14%), Positives = 71/268 (26%), Gaps = 117/268 (43%)
Query: 12 HEYIQNFKILQAAFKKM----------NVDKIV---PIDKLV-----KGR---------- 43
Y + K Q + + ++ IV P++ + KG+
Sbjct: 1634 DLY-KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 44 FQDNFEFLQWFKKFF-DVNNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPA---- 98
F+ + +K F ++N Y +SATQ T PA
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSY----------TFRSEKGLLSATQF---TQPALTLM 1739
Query: 99 -VA-----------PRPVAPKQPVA-KS----TAAAPRAG----------LNSRG----- 126
A P A S A A A + RG
Sbjct: 1740 EKAAFEDLKSKGLIPADAT----FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 127 -TPAGRVDNNSSRVDELNSQMMDLKLTVDGLEK------ERDFYF--------------- 164
P + ++ + +N + + + L+ +R +
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 165 -GKLRDIEVLCQEHEGETPVIQNILNIL 191
G LR ++ + N+LN +
Sbjct: 1856 AGDLRALDTVT-----------NVLNFI 1872
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat,
guanine nucleotide exchange factor, disease mutation,
leukodystrophy; 2.00A {Homo sapiens}
Length = 182
Score = 28.8 bits (64), Expect = 0.77
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 167 LRDIEVLCQEHEGETPVIQNILNILYATEI 196
L IE EHE + +L Y EI
Sbjct: 107 LAAIEDFFLEHEALGISMAKVLMAFYQLEI 136
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus,
protein transport, ER-golgi transport, ARF, GTPase,
effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Length = 77
Score = 27.6 bits (61), Expect = 0.95
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIE 171
++VDEL + L+ ++ +++ + K R++E
Sbjct: 37 AKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat
domain, structural genomics, PSI, protein structure
initiative; 1.90A {Homo sapiens}
Length = 168
Score = 27.4 bits (60), Expect = 2.4
Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 6/41 (14%)
Query: 167 LRDIEVLCQEHEGETPVIQNILNILYATE------IFTWRS 201
L ++V C ++ Y E W+
Sbjct: 102 LYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKE 142
>2wt7_B Transcription factor MAFB; transcription, transcription regulation,
nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 2wty_A* 1k1v_A
Length = 90
Score = 26.1 bits (57), Expect = 3.6
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 118 PRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKL 167
+ R + + + +L Q+ LK V L +ERD Y K
Sbjct: 36 RGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer,
hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A*
1r4k_A 1si2_A 1si3_A
Length = 861
Score = 27.1 bits (59), Expect = 5.4
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 90 QIHKRTTPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTP 128
++ PA+AP P P + PR + G
Sbjct: 2 AMYSGAGPALAP-PAPPPPIQGYAFKPPPRPDFGTSGRT 39
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 25.7 bits (56), Expect = 6.1
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 141 ELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE 180
+ Q+ L+ + ++ +R++E + E
Sbjct: 32 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 25.6 bits (56), Expect = 10.0
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 49 EFLQWFKKFFDVNN----TVADYDPVGARGGEAMGNGS 82
+ L+ F F+D N+ D++ + +
Sbjct: 13 KILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPT 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,085,173
Number of extensions: 178669
Number of successful extensions: 390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 27
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)