RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12626
         (205 letters)



>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
           N-terminal microtubule binding domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 120

 Score =  130 bits (329), Expect = 5e-40
 Identities = 56/75 (74%), Positives = 64/75 (85%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 46  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 105

Query: 61  NNTVADYDPVGARGG 75
           N    DYDPV AR G
Sbjct: 106 NYDGKDYDPVAARQG 120


>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1,
           C-terminal dimerization domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 59

 Score = 92.1 bits (229), Expect = 1e-25
 Identities = 38/58 (65%), Positives = 47/58 (81%), Gaps = 1/58 (1%)

Query: 138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE-TPVIQNILNILYAT 194
              EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE  PV+Q I++ILYAT
Sbjct: 2   EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYAT 59


>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit
           QorS, N-domain {Pseudomonas putida [TaxId: 303]}
          Length = 81

 Score = 25.9 bits (57), Expect = 1.4
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 144 SQMMDLKLTVDGLEKERD 161
           SQ+M +  T++G  +   
Sbjct: 1   SQLMRISATINGKPRVFY 18


>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
           domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 26.7 bits (59), Expect = 1.4
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 9/50 (18%)

Query: 12  HEYIQNFKILQAAFKKMNVDKIV-------PIDKLVKGRFQDNFEFLQWF 54
            + I  FK+LQA F       ++             +   +  +  L+  
Sbjct: 81  LKQI--FKLLQAPFTDCGDGPMLRLEELGDQRHAPFRHICRLCYRVLRHS 128


>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 26.0 bits (57), Expect = 2.0
 Identities = 5/30 (16%), Positives = 13/30 (43%)

Query: 167 LRDIEVLCQEHEGETPVIQNILNILYATEI 196
           L  ++ L    E    +++   + LY  ++
Sbjct: 89  LYALQALVVTLEQPPNLLRMFFDALYDEDV 118


>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 85

 Score = 24.8 bits (54), Expect = 3.7
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 1  MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDK---------LVKGRFQDNFEFL 51
          + ++K R     E  ++F  +   ++K  +       +          V   F+   + L
Sbjct: 14 VNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLL 73

Query: 52 QWFKKFF 58
            F +F 
Sbjct: 74 SEFGQFL 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 744,621
Number of extensions: 33549
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 9
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)