Query psy1263
Match_columns 115
No_of_seqs 105 out of 374
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 15:32:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 99.8 4.1E-21 1.4E-25 159.5 9.1 114 2-115 212-336 (621)
2 1w63_A Adapter-related protein 99.8 2.3E-19 8E-24 148.3 11.9 113 2-114 207-319 (618)
3 3tjz_B Coatomer subunit gamma; 98.9 1.3E-10 4.5E-15 91.6 -0.8 71 38-114 221-293 (355)
4 2vgl_B AP-2 complex subunit be 98.1 2.7E-06 9.3E-11 69.5 4.3 54 41-100 214-267 (591)
5 4gmo_A Putative uncharacterize 74.0 12 0.00041 30.9 7.7 58 43-103 553-612 (684)
6 3pes_A Uncharacterized protein 45.1 3.6 0.00012 25.3 -0.4 19 31-49 34-66 (85)
7 2vxg_A LD41624, GE-1, CG6181-P 40.0 9.3 0.00032 25.9 1.0 49 29-77 37-107 (139)
8 3fga_B Serine/threonine-protei 34.5 1.3E+02 0.0046 23.6 7.0 29 49-77 131-159 (403)
9 3ul1_B Importin subunit alpha- 33.5 73 0.0025 24.8 5.4 24 42-65 114-137 (510)
10 3tpo_A Importin subunit alpha- 33.0 1.4E+02 0.0048 23.2 7.0 62 52-113 425-492 (529)
11 1zrv_A Spinigerin; helical pep 32.6 24 0.00081 16.8 1.5 10 46-55 15-24 (26)
12 2jak_A Serine/threonine-protei 31.5 1.3E+02 0.0043 23.7 6.4 29 49-77 176-204 (392)
13 4gmj_A CCR4-NOT transcription 30.6 78 0.0027 23.1 4.7 39 12-57 144-182 (229)
14 3ul1_B Importin subunit alpha- 28.0 2.1E+02 0.0072 22.1 7.9 61 53-113 407-473 (510)
15 1e9k_A CAMP specific phosphodi 27.9 15 0.00052 19.2 0.3 22 33-54 2-23 (38)
16 2ccq_A P97, peptide N-glycanas 24.9 55 0.0019 20.6 2.7 45 7-51 13-57 (99)
17 3tpo_A Importin subunit alpha- 24.6 1.6E+02 0.0054 22.9 5.9 16 43-58 134-149 (529)
18 4b89_A General negative regula 24.0 85 0.0029 23.3 3.9 38 13-57 168-205 (249)
19 2npp_B PP2A, B subunit, serine 23.3 2.8E+02 0.0097 22.0 10.1 57 17-77 135-192 (449)
20 2vj4_A Protein MXIC, MXIC; sec 23.1 1.4E+02 0.0047 22.5 5.0 61 35-96 49-110 (294)
21 4hat_C Exportin-1; heat repeat 22.8 3.5E+02 0.012 23.6 8.1 30 82-111 602-631 (1023)
22 2vgl_B AP-2 complex subunit be 22.1 2.9E+02 0.01 21.8 7.2 36 38-76 43-78 (591)
23 3htu_A Vacuolar protein-sortin 22.1 1.4E+02 0.0048 18.1 4.1 49 8-57 6-63 (79)
24 4b8j_A Importin subunit alpha- 21.5 1.9E+02 0.0066 22.0 5.7 57 58-114 425-492 (528)
25 1w63_A Adapter-related protein 21.1 2.6E+02 0.0088 22.4 6.6 17 38-54 64-80 (618)
26 2ls2_A High affinity copper up 24.8 23 0.00078 17.1 0.0 9 86-94 17-25 (26)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.84 E-value=4.1e-21 Score=159.53 Aligned_cols=114 Identities=21% Similarity=0.283 Sum_probs=102.8
Q ss_pred cccChhcHHHHHhhHHHHHHHHHHHHhcC-CC-CCccccCCCchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhC
Q psy1263 2 CENSIDTLHHFKKIVPNLVRNLKNLILAG-YS-PEHDVSGVSDPFLQVKILKLLRILGK-NDVEASEAMNDILAQVATNT 78 (115)
Q Consensus 2 ~~~~~~~~~~~~~~vp~lv~iL~~lv~~~-~~-~eY~y~gvp~PwLQvklLrlL~~l~~-~d~~~~~~l~~vL~~i~~~~ 78 (115)
|++.+++|+.|..++|.++++|++++..+ ++ +||+|||+|+||+|+++|++|+.+++ +|++.++.++++|.+++++.
T Consensus 212 ~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~ 291 (621)
T 2vgl_A 212 TTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA 291 (621)
T ss_dssp HHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 56777888999999999999999999876 66 99999999999999999999999998 57899999999999999873
Q ss_pred -CCC-------cchhHHHHHHHHHHHHhcCCChhHHHHHHHHhcC
Q psy1263 79 -ETS-------KNVGNTILYETVLSIMDIKSESGLRSFFTTFTAK 115 (115)
Q Consensus 79 -~~~-------~na~~AILyEav~ti~~~~~~~~L~~~av~~lgk 115 (115)
+.. +|+++||+|||++++++++++++++..+++.|++
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~ 336 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQ 336 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 333 4899999999999999999999999999998863
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.80 E-value=2.3e-19 Score=148.26 Aligned_cols=113 Identities=76% Similarity=1.113 Sum_probs=104.5
Q ss_pred cccChhcHHHHHhhHHHHHHHHHHHHhcCCCCCccccCCCchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC
Q psy1263 2 CENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETS 81 (115)
Q Consensus 2 ~~~~~~~~~~~~~~vp~lv~iL~~lv~~~~~~eY~y~gvp~PwLQvklLrlL~~l~~~d~~~~~~l~~vL~~i~~~~~~~ 81 (115)
|+.+|+..+.|.+++|.++++|++++.+++++||+|+|+++||+|++++++|+.++..|++..+++.++|.+++++++..
T Consensus 207 ~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 207 CERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETS 286 (618)
T ss_dssp CCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCS
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Confidence 34445555689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCChhHHHHHHHHhc
Q psy1263 82 KNVGNTILYETVLSIMDIKSESGLRSFFTTFTA 114 (115)
Q Consensus 82 ~na~~AILyEav~ti~~~~~~~~L~~~av~~lg 114 (115)
+|+++||+|||+++++++.+++.++..+++.|+
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~ 319 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKSESGLRVLAINILG 319 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999999999999998999888888875
No 3
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.88 E-value=1.3e-10 Score=91.63 Aligned_cols=71 Identities=11% Similarity=0.237 Sum_probs=39.0
Q ss_pred cCCCchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHhcCC-ChhHHHHHHHHhc
Q psy1263 38 SGVSDPFLQVKILKLLRILGKND-VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESGLRSFFTTFTA 114 (115)
Q Consensus 38 ~gvp~PwLQvklLrlL~~l~~~d-~~~~~~l~~vL~~i~~~~~~~~na~~AILyEav~ti~~~~~-~~~L~~~av~~lg 114 (115)
.|+.+||.|+.++|++..+.++| +..++.+.++|...+ +|++.||+|||+++|+.+.. +..++..|++.|+
T Consensus 221 ~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L------~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~ 293 (355)
T 3tjz_B 221 HGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCL------RNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQ 293 (355)
T ss_dssp SCCSCHHHHHHHHHHHTCC-----------------CCC------CCSSHHHHHHHHHHHTC-----------CCCTHH
T ss_pred CCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH------cCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 46889999999999999999887 788899999888776 47899999999999999977 4556666666553
No 4
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.06 E-value=2.7e-06 Score=69.50 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=40.7
Q ss_pred CchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHhcC
Q psy1263 41 SDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK 100 (115)
Q Consensus 41 p~PwLQvklLrlL~~l~~~d~~~~~~l~~vL~~i~~~~~~~~na~~AILyEav~ti~~~~ 100 (115)
++||+|+++||+|+.+.+.++...+.+.+.+ ... -++.+.+|+|||++++..+.
T Consensus 214 ~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l---~~~---l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 214 CTEWGQIFILDCLSNYNPKDDREAQSICERV---TPR---LSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp CCHHHHHHHHHHHHTSCCCSHHHHHHHHHHH---TTC---SCSSTTHHHHHHHHHHHHSC
T ss_pred CCchHHHHHHHHHHHhCCCChHHHHHHHHHH---HHH---HcCCChHHHHHHHHHHHHHh
Confidence 5899999999999999987665544443333 222 23556799999999999985
No 5
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=74.04 E-value=12 Score=30.86 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHhcCCCh
Q psy1263 43 PFLQVKILKLLRILGK--NDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSES 103 (115)
Q Consensus 43 PwLQvklLrlL~~l~~--~d~~~~~~l~~vL~~i~~~~~~~~na~~AILyEav~ti~~~~~~~ 103 (115)
-|+++|++-+|..++. ++.+....+-.-|-.++..+. ...-.++.||++.++.+..+.
T Consensus 553 ~~lrv~~ig~Lg~LA~~~~~~~~n~~Ig~fLl~~l~~~~---~~~~~v~~EalnaifDIyaD~ 612 (684)
T 4gmo_A 553 QGLGVKCIGVVGSLAHDPAPIEVNREVGVFLVTLLRQSN---NVPPAEIVEALNQLFDIYGDE 612 (684)
T ss_dssp TSHHHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTCT---TCCHHHHHHHHHHHHHHSCCT
T ss_pred hhhhhhHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHhcCC
Confidence 3799999999999987 355666666666666665421 233478999999999998874
No 6
>3pes_A Uncharacterized protein GP49; PSI2, structural genomics, protein structure initiative, MID center for structural genomics, MCSG; 1.30A {Pseudomonas phage yua}
Probab=45.13 E-value=3.6 Score=25.32 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=14.4
Q ss_pred CCCCcccc--------------CCCchHHHHHH
Q psy1263 31 YSPEHDVS--------------GVSDPFLQVKI 49 (115)
Q Consensus 31 ~~~eY~y~--------------gvp~PwLQvkl 49 (115)
.++||+|- |-|+|||-.|+
T Consensus 34 ~~~~~~Y~~e~~~~~W~i~DRRGR~A~WLE~K~ 66 (85)
T 3pes_A 34 GPPEYCYPAEGGCGEWEVRDRRGRPAPWLERKL 66 (85)
T ss_dssp SCGGGCBCCBCCEEEEEEECTTSCBCHHHHTTC
T ss_pred CCccccccCCCCccceeeeeccCCccHHHHhHh
Confidence 57788884 47899997764
No 7
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=40.02 E-value=9.3 Score=25.86 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=33.6
Q ss_pred cCCCCCccccCCCchHHHHHHHHHHHhhCCC----------------------CHHHHHHHHHHHHHHHhh
Q psy1263 29 AGYSPEHDVSGVSDPFLQVKILKLLRILGKN----------------------DVEASEAMNDILAQVATN 77 (115)
Q Consensus 29 ~~~~~eY~y~gvp~PwLQvklLrlL~~l~~~----------------------d~~~~~~l~~vL~~i~~~ 77 (115)
+++.|+|.++..|.|.=|.=+|.+.+-+..+ |+.+++.+..|+.++.++
T Consensus 37 ~~~dp~~~~~~~~~~Lsq~vLLSLiqqls~dL~~~~~~Kl~WLe~vl~aid~~dp~i~~~~p~Il~~l~~~ 107 (139)
T 2vxg_A 37 RHTDSNQAFAPEGCRLEQKVLLSLIQQISADMTNHNELKQRYLNEALLAINMADPITREHAPKVLTELYRN 107 (139)
T ss_dssp HHSCHHHHTC----CCCHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHCCTTSHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHhcCCCCCCccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 4477888888889999999999999988642 667777766666666654
No 8
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=34.49 E-value=1.3e+02 Score=23.61 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=25.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy1263 49 ILKLLRILGKNDVEASEAMNDILAQVATN 77 (115)
Q Consensus 49 lLrlL~~l~~~d~~~~~~l~~vL~~i~~~ 77 (115)
++++|..|...|+..++.+.++|.+|..+
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~k 159 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGK 159 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHh
Confidence 67888888889999999999999998765
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=33.46 E-value=73 Score=24.81 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=13.7
Q ss_pred chHHHHHHHHHHHhhCCCCHHHHH
Q psy1263 42 DPFLQVKILKLLRILGKNDVEASE 65 (115)
Q Consensus 42 ~PwLQvklLrlL~~l~~~d~~~~~ 65 (115)
+|-+|..-...|..+..++++...
T Consensus 114 ~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 114 CSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 456666666666666554444333
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=33.01 E-value=1.4e+02 Score=23.18 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=42.5
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhhCC-CCcchhHHHHHH---HHHHHHhc--CCChhHHHHHHHHh
Q psy1263 52 LLRILGKNDVEASEAMNDILAQVATNTE-TSKNVGNTILYE---TVLSIMDI--KSESGLRSFFTTFT 113 (115)
Q Consensus 52 lL~~l~~~d~~~~~~l~~vL~~i~~~~~-~~~na~~AILyE---av~ti~~~--~~~~~L~~~av~~l 113 (115)
++.+|...|+++.....+.|..+++..+ ......++.++| .+..|-.+ ..+.+.+..|.++|
T Consensus 425 L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 492 (529)
T 3tpo_A 425 LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492 (529)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3445556788888888888888887644 334455666665 35666555 45678888888876
No 11
>1zrv_A Spinigerin; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic} PDB: 1zrw_A
Probab=32.63 E-value=24 Score=16.81 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=5.4
Q ss_pred HHHHHHHHHh
Q psy1263 46 QVKILKLLRI 55 (115)
Q Consensus 46 QvklLrlL~~ 55 (115)
|.+|||+|..
T Consensus 15 qlrimrlltr 24 (26)
T 1zrv_A 15 QLRIMRLLTR 24 (26)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 4555555544
No 12
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=31.47 E-value=1.3e+02 Score=23.68 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=25.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy1263 49 ILKLLRILGKNDVEASEAMNDILAQVATN 77 (115)
Q Consensus 49 lLrlL~~l~~~d~~~~~~l~~vL~~i~~~ 77 (115)
++|+|..|...|+..++.+..+|.++..+
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~K 204 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGK 204 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH
Confidence 57888888889999999999999999876
No 13
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=30.59 E-value=78 Score=23.10 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHhhHHHHHHHHHHHHhcCCCCCccccCCCchHHHHHHHHHHHhhC
Q psy1263 12 FKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILG 57 (115)
Q Consensus 12 ~~~~vp~lv~iL~~lv~~~~~~eY~y~gvp~PwLQvklLrlL~~l~ 57 (115)
..-.+|-+.++|.++-.++ +.+-|+||+. .||++|.-+.
T Consensus 144 L~~viPFVcKvLe~~~~S~------iFkPPNPW~~-~IL~lL~Ely 182 (229)
T 4gmj_A 144 LLYVVPFVAKVLESSIRSV------VFRPPNPWTM-AIMNVLAELH 182 (229)
T ss_dssp HHHHHHHHHHHHHTTTTCT------TTSTTCHHHH-HHHHHHHHHH
T ss_pred EEEeehhHHHHHHhcccCC------cCCCCChhHH-HHHHHHHHHH
Confidence 3447788888888854333 3457999995 7788777664
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=27.99 E-value=2.1e+02 Score=22.12 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=41.4
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHhhCC-CCcchhHHHHHH---HHHHHHhc--CCChhHHHHHHHHh
Q psy1263 53 LRILGKNDVEASEAMNDILAQVATNTE-TSKNVGNTILYE---TVLSIMDI--KSESGLRSFFTTFT 113 (115)
Q Consensus 53 L~~l~~~d~~~~~~l~~vL~~i~~~~~-~~~na~~AILyE---av~ti~~~--~~~~~L~~~av~~l 113 (115)
+.+|...|+++....-+.|..+++..+ ......++.++| .+..|-.+ ..+++.+..|.++|
T Consensus 407 ~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 473 (510)
T 3ul1_B 407 MNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473 (510)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344555688888888888888887643 334455666665 35555555 35677888888876
No 15
>1e9k_A CAMP specific phosphodiesterase PDE4D5; hydrolase; NMR {Homo sapiens} SCOP: j.87.1.1
Probab=27.89 E-value=15 Score=19.18 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=16.8
Q ss_pred CCccccCCCchHHHHHHHHHHH
Q psy1263 33 PEHDVSGVSDPFLQVKILKLLR 54 (115)
Q Consensus 33 ~eY~y~gvp~PwLQvklLrlL~ 54 (115)
||-+--..+.|||--.+.+.|+
T Consensus 2 pevdnphc~~~~lnedlvk~lr 23 (38)
T 1e9k_A 2 PEVDNPHCPNPWLNEDLVKSLR 23 (38)
T ss_dssp CCSSCSSSSTHHHHHHHTTTTT
T ss_pred CCCCCCCCCCccccHHHHHHHH
Confidence 4556667899999888877765
No 16
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=24.92 E-value=55 Score=20.56 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=38.2
Q ss_pred hcHHHHHhhHHHHHHHHHHHHhcCCCCCccccCCCchHHHHHHHH
Q psy1263 7 DTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILK 51 (115)
Q Consensus 7 ~~~~~~~~~vp~lv~iL~~lv~~~~~~eY~y~gvp~PwLQvklLr 51 (115)
++++.+..++..+.+++..|+.+.-.+.|.-=...+|-.|-+++.
T Consensus 13 n~~~~~~~a~~tL~k~l~Nil~~P~e~KyR~Ir~~N~~f~~~v~~ 57 (99)
T 2ccq_A 13 NTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLP 57 (99)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCTTCGGGGEEETTCHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCCcccceeecCCHHHHHHhcC
Confidence 346788899999999999999887777788888999999998754
No 17
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=24.58 E-value=1.6e+02 Score=22.88 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHhhCC
Q psy1263 43 PFLQVKILKLLRILGK 58 (115)
Q Consensus 43 PwLQvklLrlL~~l~~ 58 (115)
|-+|......|..+..
T Consensus 134 ~~~q~~Aa~aL~nia~ 149 (529)
T 3tpo_A 134 SPIQFESAWALTNIAS 149 (529)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4444444444444443
No 18
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=23.96 E-value=85 Score=23.27 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=26.0
Q ss_pred HhhHHHHHHHHHHHHhcCCCCCccccCCCchHHHHHHHHHHHhhC
Q psy1263 13 KKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILG 57 (115)
Q Consensus 13 ~~~vp~lv~iL~~lv~~~~~~eY~y~gvp~PwLQvklLrlL~~l~ 57 (115)
.-.+|-+.++|.+.-.++ +..=|+||+ +.||++|.-+.
T Consensus 168 ~~vIPFVcKvLe~~k~Sk------iFkPPNPWt-~~IL~lL~Ely 205 (249)
T 4b89_A 168 EIVVPFVTKILQRASESK------IFKPPNPWT-VGILKLLIELN 205 (249)
T ss_dssp HHHHHHHHHHHGGGTTCS------SSSTTCHHH-HHHHHHHHHHH
T ss_pred EEEeeHHHHHHHhcccCC------ccCCCCchH-HHHHHHHHHHH
Confidence 357888889988864433 345689998 45777776554
No 19
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=23.27 E-value=2.8e+02 Score=22.03 Aligned_cols=57 Identities=11% Similarity=0.221 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcC-CCCCccccCCCchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy1263 17 PNLVRNLKNLILAG-YSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATN 77 (115)
Q Consensus 17 p~lv~iL~~lv~~~-~~~eY~y~gvp~PwLQvklLrlL~~l~~~d~~~~~~l~~vL~~i~~~ 77 (115)
.-+-++|-+.+.+. +.+...-.-+... =++++|..|...|+..++.+.++|.+|..+
T Consensus 135 qlVYe~llrfv~s~~f~~~~~k~~id~~----Fi~~Ll~lfdSeDpRERd~LktiLhrIY~K 192 (449)
T 2npp_B 135 QLVYEFFLRFLESPDFQPNIAKKYIDQK----FVLQLLELFDSEDPRERDFLKTTLHRIYGK 192 (449)
T ss_dssp HHHHHHHHHHHTSTTCCSTTGGGTSCHH----HHHHHHHTTTSSTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCChhhhhhhCCHH----HHHHHHHHcCCCChHHHHHHHHHHHHHHHH
Confidence 34556666776543 4443333334433 458899999999999999999999999876
No 20
>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS, virulence, TR type three secretion system; HET: MLY; 2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A
Probab=23.06 E-value=1.4e+02 Score=22.53 Aligned_cols=61 Identities=23% Similarity=0.172 Sum_probs=38.9
Q ss_pred ccccCCCchHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHH
Q psy1263 35 HDVSGVSDPFLQVKILKLL-RILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSI 96 (115)
Q Consensus 35 Y~y~gvp~PwLQvklLrlL-~~l~~~d~~~~~~l~~vL~~i~~~~~~~~na~~AILyEav~ti 96 (115)
|.-.-.||||.|+.-|+-| +.-. -+....+.+.+.+.++.+.....-.+|--|...|=.+.
T Consensus 49 ~l~~~F~D~Sd~~~AL~~Ll~r~~-l~~~~~~~l~~al~~le~~~~~~i~aGiNial~Ar~F~ 110 (294)
T 2vj4_A 49 RLXRYFXDPSDQVLALRELLNEXD-LTAEQVELLTXIINEIISGSEXSVNAGINSAIQAXLFG 110 (294)
T ss_dssp HHHHHCCSHHHHHHHHHHHTTCSC-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhccchhhhhcchHHHHHhhhh
Confidence 5558899999999999975 2222 34566788888888887772122235555555553333
No 21
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=22.84 E-value=3.5e+02 Score=23.57 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=19.6
Q ss_pred cchhHHHHHHHHHHHHhcCCChhHHHHHHH
Q psy1263 82 KNVGNTILYETVLSIMDIKSESGLRSFFTT 111 (115)
Q Consensus 82 ~na~~AILyEav~ti~~~~~~~~L~~~av~ 111 (115)
.+.....+||||.+++.-.++...+...++
T Consensus 602 ~~~~~~~lyeai~~vi~~~~~~~~~~~~l~ 631 (1023)
T 4hat_C 602 QPQQVHTFYKACGIIISEERSVAERNRLLS 631 (1023)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 345556888888888887776654544443
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=22.15 E-value=2.9e+02 Score=21.78 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=24.3
Q ss_pred cCCCchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy1263 38 SGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVAT 76 (115)
Q Consensus 38 ~gvp~PwLQvklLrlL~~l~~~d~~~~~~l~~vL~~i~~ 76 (115)
.|.+.+|+...+++ .+..+|...+...+-.+.....
T Consensus 43 ~G~d~~~~~~~vi~---l~~s~~~~~Krl~yl~l~~~~~ 78 (591)
T 2vgl_B 43 VGKDVSSLFPDVVN---CMQTDNLELKKLVYLYLMNYAK 78 (591)
T ss_dssp TTCCCGGGHHHHHH---TTSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHcc
Confidence 56677999888777 4566677776666666655543
No 23
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=22.12 E-value=1.4e+02 Score=18.08 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=33.5
Q ss_pred cHHHHHhhHHHHHH---------HHHHHHhcCCCCCccccCCCchHHHHHHHHHHHhhC
Q psy1263 8 TLHHFKKIVPNLVR---------NLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILG 57 (115)
Q Consensus 8 ~~~~~~~~vp~lv~---------iL~~lv~~~~~~eY~y~gvp~PwLQvklLrlL~~l~ 57 (115)
.|+.|.+++-..+. .++-|....-+..-.+||+|-+ +-.|.|++|..=+
T Consensus 6 speeWa~~Iy~Wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~-~L~kaL~~L~k~g 63 (79)
T 3htu_A 6 RPEEWGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEA-TLLRALQALQQEH 63 (79)
T ss_dssp CHHHHHHHHHHHHHTTCCSCSEECHHHHHHSSTTTTSTTTTCCHH-HHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCCCceEEEeeeccCCCCCCCcccCCCHH-HHHHHHHHHHHcC
Confidence 46677777766654 3666666666777888998754 5577778886544
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=21.47 E-value=1.9e+02 Score=22.01 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCC-------CcchhHHHHHHH--HHHHHhc--CCChhHHHHHHHHhc
Q psy1263 58 KNDVEASEAMNDILAQVATNTET-------SKNVGNTILYET--VLSIMDI--KSESGLRSFFTTFTA 114 (115)
Q Consensus 58 ~~d~~~~~~l~~vL~~i~~~~~~-------~~na~~AILyEa--v~ti~~~--~~~~~L~~~av~~lg 114 (115)
.+|+.+.....++|..++...+. ..|.....+.|+ +..+..+ +.+++.+..|..++.
T Consensus 425 ~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~ 492 (528)
T 4b8j_A 425 CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 492 (528)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34666666666777777654322 222333333333 4555544 456778888877663
No 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=21.11 E-value=2.6e+02 Score=22.38 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.5
Q ss_pred cCCCchHHHHHHHHHHH
Q psy1263 38 SGVSDPFLQVKILKLLR 54 (115)
Q Consensus 38 ~gvp~PwLQvklLrlL~ 54 (115)
.|.+-+|++..++++++
T Consensus 64 ~G~d~~~~~~~vik~~~ 80 (618)
T 1w63_A 64 LGYPAHFGQLECLKLIA 80 (618)
T ss_dssp TTCCCGGGHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHc
Confidence 57788999999998876
No 26
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=24.84 E-value=23 Score=17.13 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=5.9
Q ss_pred HHHHHHHHH
Q psy1263 86 NTILYETVL 94 (115)
Q Consensus 86 ~AILyEav~ 94 (115)
-|++||+++
T Consensus 17 l~~~YE~Lk 25 (26)
T 2ls2_A 17 LAMFYEGLK 25 (26)
Confidence 466777765
Done!