RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1263
         (115 letters)



>d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA,
          N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId:
          1245]}
          Length = 132

 Score = 26.3 bits (57), Expect = 0.70
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 26 LILAGYSPEHDVSGVS 41
          LI  G S EHDVS  S
Sbjct: 6  LIFGGNSSEHDVSKRS 21


>d1e4ea1 c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA,
          N-domain {Enterococcus faecium [TaxId: 1352]}
          Length = 130

 Score = 25.6 bits (55), Expect = 1.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 26 LILAGYSPEHDVSGVS 41
          ++  G S EHDVS  S
Sbjct: 7  ILFGGCSEEHDVSVKS 22


>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain
          {Escherichia coli, gene ddlB [TaxId: 562]}
          Length = 96

 Score = 22.7 bits (48), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 26 LILAGYSPEHDVSGVS 41
          ++L G S E +VS  S
Sbjct: 7  VLLGGTSAEREVSLNS 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.361 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,631
Number of extensions: 14132
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 6
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)