BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12630
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40307|PSB2_RAT Proteasome subunit beta type-2 OS=Rattus norvegicus GN=Psmb2 PE=1
SV=1
Length = 201
Score = 152 bits (384), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 104/151 (68%), Gaps = 16/151 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ G++GDTVQFAE+I KN+QLYKMRNGYELSP AAA +TR+ LA+ LRSR+PY+ N+L
Sbjct: 44 LLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLL 103
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
+AG+D EGP L+++DYLA+L + P+ HGY +TLSI+ Y+
Sbjct: 104 LAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKC 163
Query: 106 -SEVQKRLIINVPNFKVTMVSKDGIKHLPPI 135
E+QKR I+N+P F V ++ KDGI +L I
Sbjct: 164 LEELQKRFILNLPTFSVRVIDKDGIHNLENI 194
>sp|Q9R1P3|PSB2_MOUSE Proteasome subunit beta type-2 OS=Mus musculus GN=Psmb2 PE=1 SV=1
Length = 201
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 104/151 (68%), Gaps = 16/151 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ G++GDTVQFAE+I KN+QLYKMRNGYELSP AAA +TR+ LA+ LRSR+PY+ N+L
Sbjct: 44 LLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLL 103
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
+AG+D EGP L+++DYLA+L + P+ HGY +TLSI+ Y+
Sbjct: 104 LAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKC 163
Query: 106 -SEVQKRLIINVPNFKVTMVSKDGIKHLPPI 135
E+QKR I+N+P F V ++ KDGI +L I
Sbjct: 164 LEELQKRFILNLPTFSVRVIDKDGIHNLENI 194
>sp|Q5E9K0|PSB2_BOVIN Proteasome subunit beta type-2 OS=Bos taurus GN=PSMB2 PE=1 SV=1
Length = 201
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 104/151 (68%), Gaps = 16/151 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ G++GDTVQFAE+I KN+QLYKMRNGYELSP AAA +TR+ LA+YLRSR+PY+ N+L
Sbjct: 44 LLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADYLRSRTPYHVNLL 103
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
+AG+D EGP L+++DYLA+L + P+ HGY +TLSI+ Y+
Sbjct: 104 LAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISREKAVELLRKC 163
Query: 106 -SEVQKRLIINVPNFKVTMVSKDGIKHLPPI 135
E+QKR I+N+P F V ++ ++GI L I
Sbjct: 164 LEELQKRFILNLPTFSVRIIDRNGIHDLDNI 194
>sp|P49721|PSB2_HUMAN Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1
Length = 201
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 103/151 (68%), Gaps = 16/151 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ G++GDTVQFAE+I KN+QLYKMRNGYELSP AAA +TR+ LA+ LRSR+PY+ N+L
Sbjct: 44 LLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLL 103
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
+AG+D EGP L+++DYLA+L + P+ HGY +TLSI+ Y+
Sbjct: 104 LAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKC 163
Query: 106 -SEVQKRLIINVPNFKVTMVSKDGIKHLPPI 135
E+QKR I+N+P F V ++ K+GI L I
Sbjct: 164 LEELQKRFILNLPTFSVRIIDKNGIHDLDNI 194
>sp|Q9P6U7|PSB4_NEUCR Probable proteasome subunit beta type-4 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=15E6.60 PE=3 SV=1
Length = 203
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 88/146 (60%), Gaps = 17/146 (11%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA +G++GDTVQFAE+ N QLY MRNG +LSP A A + R +LA LRSR PYN N+L
Sbjct: 44 MAFSGEAGDTVQFAEYTQANAQLYSMRNGTDLSPSALANFVRGELATSLRSRKPYNVNLL 103
Query: 61 IAGHDP-EEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR-------------- 105
+ G DP P L+++DYLASL ++PY HGY LSI+ ++H
Sbjct: 104 LGGVDPITHKPSLYWLDYLASLAKVPYAAHGYAQYYCLSILDKHHHPDITLHQGIKLLNL 163
Query: 106 --SEVQKRLIINVPNFKVTMVSKDGI 129
E+++RL I+ V V+KDGI
Sbjct: 164 CTDELKRRLPIDFKGMTVKAVTKDGI 189
>sp|P22141|PSB4_YEAST Proteasome subunit beta type-4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE1 PE=1 SV=2
Length = 198
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 97/155 (62%), Gaps = 17/155 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
M+ G++GDTVQFAE+I NIQLY +R YELSP+A + + R++LA+ +RSR PY N+L
Sbjct: 44 MSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVL 103
Query: 61 IAGHDPEEG-PQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR-------------- 105
I G+D ++ P+L+ IDYL + +E+PY HGY G T S++ ++R
Sbjct: 104 IGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKL 163
Query: 106 --SEVQKRLIINVPNFKVTMVSKDGIKHLPPIKAK 138
E++KR+ ++ V +V KDGI+ + +A+
Sbjct: 164 CVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQAQ 198
>sp|Q9VQE5|PSB2_DROME Probable proteasome subunit beta type-2 OS=Drosophila melanogaster
GN=Prosbeta4R2 PE=2 SV=3
Length = 210
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 16/160 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA GD GDT+QF +FI+KN+ LYK+ +GY LS ++AA++TRK LA+Y+R+ + Y ML
Sbjct: 46 MATVGDGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRYQVAML 105
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRS-------------- 106
+AG+D EGP L +ID + I + HG+ + SI+ Y S
Sbjct: 106 LAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSILQRYWNSKLSQEDAYSLMKKC 165
Query: 107 --EVQKRLIINVPNFKVTMVSKDGIKHLPPIKAKNIPEEN 144
E+Q+RLIIN NF+V +V G++ + I ++ +E+
Sbjct: 166 VLEIQRRLIINQRNFEVYVVDSKGMRKMEAINPGSLNKES 205
>sp|Q09720|PSB4_SCHPO Probable proteasome subunit beta type-4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC31A2.04c PE=3
SV=1
Length = 194
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 87/149 (58%), Gaps = 17/149 (11%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
M G++GDT FAE+IA NI LY +R+ LSP A A +TRKQLA LRSR PY N+L
Sbjct: 44 MLYCGEAGDTTNFAEYIAANISLYTLRHNLNLSPEATASFTRKQLATSLRSRKPYQVNIL 103
Query: 61 IAGHDPEEG-PQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR-------------- 105
+AG++ G P+LF++DYLA+ + +PY GY LSI Y++
Sbjct: 104 LAGYETNLGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFDRYYKPDLTIDEAVRIMKL 163
Query: 106 --SEVQKRLIINVPNFKVTMVSKDGIKHL 132
E++KR+ I+ F +V KDGI+ +
Sbjct: 164 CFDELKKRMPIDFKGFICKVVDKDGIREI 192
>sp|A5DB52|PSB4_PICGU Probable proteasome subunit beta type-4 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PRO2 PE=3 SV=1
Length = 194
Score = 119 bits (298), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 89/148 (60%), Gaps = 18/148 (12%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMR-NGYELSPRAAAYYTRKQLAEYLRSRSPYNCNM 59
MA +G++GDTVQFAE+I N QLY MR N ELSP+A A + R QLA +RSR PY N+
Sbjct: 44 MAYSGEAGDTVQFAEYIQANTQLYTMRENDTELSPKATASFVRNQLATSIRSRKPYQVNV 103
Query: 60 LIAGHDPEEG-PQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR------------- 105
L+AG+D G P L +IDYL + +E+PY HGY G S++ ++++
Sbjct: 104 LLAGYDTNTGKPSLNWIDYLGTQVELPYAAHGYAGFYCTSLLDKHYKKGMNFEDGLDLLK 163
Query: 106 ---SEVQKRLIINVPNFKVTMVSKDGIK 130
E++ R+ I+ + +V K+GIK
Sbjct: 164 KCIKELETRMPIDFKGCYIKVVDKEGIK 191
>sp|O23714|PSB2A_ARATH Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1
PE=1 SV=1
Length = 204
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 89/146 (60%), Gaps = 17/146 (11%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+A +G+ GD VQF E++ KN+ LYK RNG L+ AAA +TR +LA LR ++PY+ N+L
Sbjct: 44 VAASGEPGDRVQFTEYVQKNVSLYKFRNGIPLTTAAAANFTRGELATALR-KNPYSVNIL 102
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRS-------------- 106
+AG+D E G L++IDY+A+L ++ GY +LS M ++RS
Sbjct: 103 MAGYDDESGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKC 162
Query: 107 --EVQKRLIINVPNFKVTMVSKDGIK 130
E++ RL++ PNF + +V KDG +
Sbjct: 163 ILEIRSRLVVAPPNFVIKIVDKDGAR 188
>sp|O24633|PSB2B_ARATH Proteasome subunit beta type-2-B OS=Arabidopsis thaliana GN=PBD2
PE=1 SV=1
Length = 199
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 17/146 (11%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+A +G+ GD VQF E++ KN+ LY+ RNG LS AAA +TR +LA LR ++PY+ N+L
Sbjct: 44 VAASGEPGDRVQFTEYVQKNVSLYQFRNGIPLSTAAAANFTRGELATALR-KNPYSVNIL 102
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRS-------------- 106
+AG+D E G L++IDY+A+L ++ GY +LS M ++RS
Sbjct: 103 MAGYDKEAGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKC 162
Query: 107 --EVQKRLIINVPNFKVTMVSKDGIK 130
E++ RL+I PNF + +V KDG +
Sbjct: 163 ILEIRSRLVIAPPNFVIKIVDKDGAR 188
>sp|P0CQ12|PSB4_CRYNJ Probable proteasome subunit beta type-4 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CPR1 PE=3 SV=1
Length = 224
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA +G+ GDT FAE+I +N++LY +RN + L P AA+ + R+ LAE +RSR PY N+L
Sbjct: 44 MAFSGEPGDTNNFAEYIERNMRLYNIRNHFPLLPPAASAWVRRTLAEAIRSRHPYAVNLL 103
Query: 61 IAGHDPEEG-PQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR-------------- 105
+ G D P L++IDYL + +PY HG V+LS M ++
Sbjct: 104 LGGFDTTTSKPHLYWIDYLGTKAIVPYAAHGMGVYVSLSTMDKWWYEDMDKKEGVDLLRK 163
Query: 106 --SEVQKRLIINVPNFKVTMVSKDGIKHLPPIKAKNIPEENKGIPETEQYAAIP 157
E +KRL I +F ++ K+GI + +A I + ETE A P
Sbjct: 164 CIDETEKRLTIKF-DFNCILIDKNGIHKVDLSQADPIANIQEHPQETEVEAPHP 216
>sp|P0CQ13|PSB4_CRYNB Probable proteasome subunit beta type-4 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=CPR1 PE=3
SV=1
Length = 224
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA +G+ GDT FAE+I +N++LY +RN + L P AA+ + R+ LAE +RSR PY N+L
Sbjct: 44 MAFSGEPGDTNNFAEYIERNMRLYNIRNHFPLLPPAASAWVRRTLAEAIRSRHPYAVNLL 103
Query: 61 IAGHDPEEG-PQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR-------------- 105
+ G D P L++IDYL + +PY HG V+LS M ++
Sbjct: 104 LGGFDTTTSKPHLYWIDYLGTKAIVPYAAHGMGVYVSLSTMDKWWYEDMDKKEGVDLLRK 163
Query: 106 --SEVQKRLIINVPNFKVTMVSKDGIKHLPPIKAKNIPEENKGIPETEQYAAIP 157
E +KRL I +F ++ K+GI + +A I + ETE A P
Sbjct: 164 CIDETEKRLTIKF-DFNCILIDKNGIHKVDLSQADPIANIQEHPQETEVEAPHP 216
>sp|P91477|PSB2_CAEEL Proteasome subunit beta type-2 OS=Caenorhabditis elegans GN=pbs-4
PE=3 SV=2
Length = 199
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 18/153 (11%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
M G+ GD QF ++ +N+QLY +RNGYE+SP A ++ R+ +AE LRS+ Y ++L
Sbjct: 45 MMCIGEEGDVAQFGDWTKRNLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVL 104
Query: 61 IAGHDPEEGPQ-LFFIDYLAS-LIEIPYITHGYPGIVTLSIMG-EYHRS----------- 106
I G+D +E L +DYLA+ L + PY+ G+ G +IM EY +
Sbjct: 105 IGGYDDKEDKAFLGSVDYLANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMN 164
Query: 107 ----EVQKRLIINVPNFKVTMVSKDGIKHLPPI 135
E ++R + N+P +KV ++ K G + L +
Sbjct: 165 KCIGEAKRRFVANIPGYKVVIIDKKGYRKLDDV 197
>sp|Q9LST6|PSB2_ORYSJ Proteasome subunit beta type-2 OS=Oryza sativa subsp. japonica
GN=PBD1 PE=2 SV=2
Length = 212
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 17/146 (11%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
M +G+ GD VQF EFI KN+ LY+ RN LS A A +TR +LA LR ++PY N+L
Sbjct: 44 MGASGEPGDRVQFTEFIQKNLHLYQFRNNIPLSTAATANFTRGELATALR-KNPYYVNVL 102
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
+AG+D + G L++IDY+A+ +I GY LS+M + +R
Sbjct: 103 LAGYDSDVGASLYYIDYIATFHKIEKGAFGYGSYFCLSLMDKLYRPDMSVEEAVDLVDKC 162
Query: 106 -SEVQKRLIINVPNFKVTMVSKDGIK 130
E++ RL++ NF + +V K+G +
Sbjct: 163 IKEIRLRLVVAPQNFIIKIVDKEGAR 188
>sp|Q55DY7|PSB2_DICDI Proteasome subunit beta type-2 OS=Dictyostelium discoideum GN=psmB2
PE=3 SV=1
Length = 198
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 87/148 (58%), Gaps = 21/148 (14%)
Query: 5 GDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGH 64
G++GD VQF E+I+KNI+LY +RN Y +S AAA + R +LA +RS PY+ N+++AG+
Sbjct: 48 GEAGDRVQFTEYISKNIKLYSLRNSYPMSTPAAANFIRNELATSIRSH-PYSINLILAGY 106
Query: 65 DPE---EGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR---------------- 105
D E G L+++DYL SL ++ + HGY L ++ +H+
Sbjct: 107 DKEVEDGGTSLYYMDYLGSLQKLNFGCHGYASYFLLGLLDRHHKCDLSLEDGINLMHLCT 166
Query: 106 SEVQKRLIINVPNFKVTMVSKDGIKHLP 133
+E++ R +++ + + VS +GIK LP
Sbjct: 167 TELKTRFLVS-GKYTLKFVSSEGIKVLP 193
>sp|Q9NHC6|PSB2_TRYBB Proteasome subunit beta type-2 OS=Trypanosoma brucei brucei GN=PSB4
PE=2 SV=1
Length = 206
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 30/163 (18%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMR-NGYELSPRAAAYYTRKQLAEYLRSRS---PYN 56
+A G++G F E++ N+ L KMR +G +S A A + R LA LRSR P N
Sbjct: 45 VACAGENGPRTHFVEYVKCNMALKKMREHGRMISTHATASFMRNTLAGALRSRDGLYPVN 104
Query: 57 CNMLIAG--------HDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--- 105
C L+AG D G L+++DYL +L E+PY HGY +++ R
Sbjct: 105 C--LLAGFDVPASAEDDVATGAHLYYLDYLGTLQEVPYGCHGYGAPFVTAMLDRMWRPNL 162
Query: 106 -------------SEVQKRLIINVPNFKVTMVSKDGIKHLPPI 135
EV KR++++ F V KDG++ + +
Sbjct: 163 TAQEGVELMQKCCDEVNKRVVVSNNTFICKAVPKDGVERVQSV 205
>sp|Q8SRF1|PSB4_ENCCU Probable proteasome subunit beta type-4 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE1 PE=1 SV=1
Length = 197
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 21/156 (13%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA+TG+ GD + +++++ +++NG ELSP A+ + ++ E LR R + + +
Sbjct: 44 MAMTGNQGDAFRTMLYVSESALYEEIQNGIELSPSVLAHMIQNKVHESLR-RRQLDISSI 102
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSEV------------ 108
+AG PE+ L+ +D ++ +P+ GY I+ + ++
Sbjct: 103 VAGRGPEK-YDLWSVDKYGAISSVPFCASGYAAYFVYGILDREYSEDITIDAALSIMQKC 161
Query: 109 ----QKRLIINVPNFKVTMVSKDGI---KHLPPIKA 137
++RL+IN+ F V +V+ DGI +P IK
Sbjct: 162 VNLLKERLMINLEGFMVKIVTDDGILTRTLVPEIKG 197
>sp|A5UM14|PSB_METS3 Proteasome subunit beta OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmB PE=3 SV=1
Length = 204
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 3 VTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIA 62
+ G GD + I + LY+MRN ++S +AAA T A LRS P L+
Sbjct: 53 IAGSVGDAQNLMKIIEAEVSLYQMRNNDKISVKAAASVT----ANILRS-GPMYVQTLLG 107
Query: 63 GHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSEV-------------- 108
G D ++ P L+ +D +IE YI+ G IV ++ + + E+
Sbjct: 108 GMDGDK-PSLYSLDPAGGMIEDTYISTGSGSIVAYGVLEDRYHEEITTDEGLEIAVRAIK 166
Query: 109 --QKRLIINVPNFKVTMVSKDGIKHLPPIKAKNI 140
+R + + V V+KDG + L K +I
Sbjct: 167 AASERDTFSGNGYLVAKVTKDGFEMLDKEKVNDI 200
>sp|Q4JAY3|PSB1_SULAC Proteasome subunit beta 1 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=psmB1 PE=3 SV=1
Length = 195
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+A G GD + I+ Y+M N ++S RAAA L Y PY +L
Sbjct: 47 IAGAGIVGDIQTLTRIMNVEIKYYEMYNSRKISARAAAKLLSVIL--YQNKVLPYISELL 104
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM-GEYHR---SEVQKRLIINV 116
G D E+GP+LF +D + SLIE Y G V + ++ EY+ SE K L I
Sbjct: 105 FGGVD-EDGPKLFILDPIGSLIEDSYAAVGSGARVAIGVLEAEYNESLTSEAAKELAIKS 163
Query: 117 PNFKV--TMVSKDGIKHLPPIKAKNIPEE 143
V ++S DGI L I NI E+
Sbjct: 164 MKSAVERDVMSGDGIDIL-IINKNNIYED 191
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 23/152 (15%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
M + G GD + +LYKMR G +SPRA A L+ L S P+
Sbjct: 49 MTIAGSVGDAQAIVRALIAEARLYKMRTGKNISPRACATL----LSNILHSSRMFPFLTQ 104
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPG--IVTLSIMGEYHRS-EVQKRLIIN 115
++I G+D +GP+LF +D L + E T G I + EY R +++ L +
Sbjct: 105 IIIGGYDLTDGPKLFSLDPLGGMNEEKTFTSTGSGSPIAYGVLEAEYDRDMSIEEGLKLA 164
Query: 116 VPNFK--------------VTMVSKDGIKHLP 133
+ K V +++K+G+K L
Sbjct: 165 LKALKSAMERDTYSGNGVSVAVITKEGVKLLS 196
>sp|A3DN27|PSB2_STAMF Proteasome subunit beta 2 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB2 PE=3 SV=1
Length = 208
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 1 MAVTGDSGDTVQFAE---FIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNC 57
M ++G D AE FIA+ YK+ G + A A L YLR SPY
Sbjct: 52 MTISGLVADAEIIAEQARFIARK---YKLELGRPIKVSALASNLSIILNAYLR-MSPYIV 107
Query: 58 NMLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSEVQ 109
+L+ G+D + GP LF+ID SL E Y+ G ++ E +RS++
Sbjct: 108 QLLLGGYD-DNGPHLFYIDLFGSLSEEKYMATGSGSPTAFGVLEEEYRSDLS 158
>sp|C7P6N4|PSB_METFA Proteasome subunit beta OS=Methanocaldococcus fervens (strain DSM
4213 / JCM 157852 / AG86) GN=psmB PE=3 SV=1
Length = 224
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
+ + G GD + +LYKMR G +SP A A L+ L S P+
Sbjct: 49 LTIAGSVGDAQAIVRLLTAEAKLYKMRTGKNISPLACATL----LSNILHSNRYFPFLTQ 104
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIE 83
++I G+D EG +LF +D L + E
Sbjct: 105 LIIGGYDLLEGAKLFSLDPLGGMNE 129
>sp|Q975U8|PSB1_SULTO Proteasome subunit beta 1 OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=psmB1 PE=3 SV=1
Length = 197
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+A G GD + I+ Y+M N +S +AAA L +Y +P+ +L
Sbjct: 47 IAGAGIMGDIQTLTRLMNVEIKYYEMYNNKPISVKAAAKLLSVILYQY--KWTPFISELL 104
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM-GEYHRS---EVQKRLIINV 116
G D +EGP+LF +D + SLIE Y G V + ++ EY S + K +++
Sbjct: 105 FGGVD-DEGPKLFVLDPIGSLIEDNYAAVGSGARVAIGVLESEYDPSMNLDKGKEIVLKA 163
Query: 117 PNFKV--TMVSKDGIKHLPPIKAKNIPEEN 144
+ + S DGI L IK N E+
Sbjct: 164 LKAAIERDVTSGDGIDIL-TIKRDNTSSED 192
>sp|D3S8M7|PSB_METSF Proteasome subunit beta OS=Methanocaldococcus sp. (strain FS406-22)
GN=psmB PE=3 SV=1
Length = 224
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
M + G GD + +LYKMR G + P A A L+ L S P+
Sbjct: 49 MTIAGSVGDAQAIVRLLTAEAKLYKMRTGRNIPPLACATL----LSNILHSSRVFPFLTQ 104
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIE 83
++I G+D EG +LF +D L + E
Sbjct: 105 IIIGGYDLLEGAKLFSLDPLGGMNE 129
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 24/149 (16%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
+A GD GD + + LYK G E+S +A A LA L PY
Sbjct: 53 IAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALA----TLLANILNGSKYFPYLGW 108
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSEVQ--------- 109
L+ G+D E P+LF +D + + E Y G SI+ +R E+
Sbjct: 109 FLVGGYD--EKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAV 166
Query: 110 -------KRLIINVPNFKVTMVSKDGIKH 131
KR + V ++KDG K
Sbjct: 167 KAINVAIKRDVFTGDGLLVVTITKDGYKE 195
>sp|A2BN27|PSB2_HYPBU Proteasome subunit beta 2 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB2 PE=3 SV=1
Length = 212
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
M G D AE++A + Y++ N +S AAA Y L+ L S PY
Sbjct: 58 MTTAGLVADAQMLAEWLANHTHYYEIVNKRRMSIHAAAQY----LSIILHSAKFYPYIVQ 113
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
+L+ G+D + P+L+ ID+ S+ E Y+ G
Sbjct: 114 LLLGGYDTQ--PRLYNIDWFGSVTEEKYVATG 143
>sp|A3DN21|PSB1_STAMF Proteasome subunit beta 1 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB1 PE=3 SV=1
Length = 213
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 14 AEFIAKNIQL----YKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEG 69
A+FI + +++ Y+++ G E+ R A L Y +P +++ G D E+G
Sbjct: 69 AQFIIRALRMEAENYELQLGREIRVRGLAKILSLILYSY--KLAPLMTEVVVGGFD-EKG 125
Query: 70 PQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSEVQ 109
PQ++ +D + SLIE Y+ G G + L I+ + +R ++
Sbjct: 126 PQIYVLDPVGSLIEDKYVALGSGGPIALGIIEKEYREDID 165
>sp|Q58634|PSB_METJA Proteasome subunit beta OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmB PE=1 SV=1
Length = 224
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
M + G GD + +LYKMR G + P A A L+ L S P+
Sbjct: 49 MTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATL----LSNILHSSRMFPFLTQ 104
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPG 93
++I G+D EG +LF +D L + E T G
Sbjct: 105 IIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSG 139
>sp|A6USJ3|PSB_METVS Proteasome subunit beta OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=psmB PE=3 SV=1
Length = 219
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
M + G GD ++ ++YKMR G ++P + T L + P ++
Sbjct: 57 MTIAGSVGDAQSLIRLLSAEAKIYKMRTGNNMTPLSCTTLTSNVL--HGNRHYPLLTQLI 114
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTL-SIMGEYHRSE--VQKRLIINV 116
I G+D GP+LF +D + + E T G T ++ ++SE ++K L+I V
Sbjct: 115 IGGYDLINGPKLFSLDPVGGINEESSFTATGSGSPTAYGVLEAEYKSEINIEKGLLIAV 173
>sp|C6A2V9|PSB1_THESM Proteasome subunit beta 1 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB1 PE=3 SV=1
Length = 207
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+A G GD + + +LY+ + G E+S +A A T L+ R PY L
Sbjct: 52 LAGAGAVGDILSLVRALRAESKLYRAKVGKEMSTKALATLTSNILSG--RKYLPYFGWFL 109
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
I G+D E P L+ ID + E Y++ G
Sbjct: 110 IGGYD--EKPSLYSIDMAGGITEDKYVSAG 137
>sp|A6UT20|PSB_META3 Proteasome subunit beta OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=psmB PE=3 SV=1
Length = 217
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
M + G GD I+ LYK+R G + P + A L + P+ ++
Sbjct: 57 MTIAGSVGDAQSLVRIISAEANLYKLRTGNNIPPHSCAMLLSNVL--HGSRHFPFLIQLI 114
Query: 61 IAGHDPEEGPQLFFIDYLASLIE 83
I G+D G +LF +D + L E
Sbjct: 115 IGGYDTIHGAKLFSLDAVGGLNE 137
>sp|Q980L4|PSB1_SULSO Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA G GD + I+ Y++ G +S AAA L +Y P+ +L
Sbjct: 47 MAGAGIYGDLQTLTRIMNVEIKYYEVSTGKPISVHAAAKLLSVILYQY--KVMPFISEIL 104
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM-GEYH---RSEVQKRLIINV 116
G D E+GPQL+ +D + SLIE Y G + + ++ EY +V +LI
Sbjct: 105 FGGVD-EKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMSLDVATQLITKA 163
Query: 117 --PNFKVTMVSKDGIKHLPPIKAKNIPEENKGIP 148
+ + + S DGI K N ENK IP
Sbjct: 164 IKASIERDITSGDGIDLAIIDKKGNY--ENKFIP 195
>sp|D0KRX1|PSB1_SULS9 Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain 98/2)
GN=psmB1 PE=3 SV=1
Length = 196
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA G GD + I+ Y++ G +S AAA L +Y P+ +L
Sbjct: 47 MAGAGIYGDLQTLTRIMNVEIKYYEVSTGKPISVHAAAKLLSVILYQY--KVMPFISEIL 104
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM-GEYH---RSEVQKRLIINV 116
G D E+GPQL+ +D + SLIE Y G + + ++ EY +V +LI
Sbjct: 105 FGGVD-EKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMSLDVATQLITKA 163
Query: 117 --PNFKVTMVSKDGIKHLPPIKAKNIPEENKGIP 148
+ + + S DGI K N ENK IP
Sbjct: 164 IKASIERDITSGDGIDLAIIDKKGNY--ENKFIP 195
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSR--SPYNCN 58
M + G GD Q I LY++R G ++S AAA L+ YL SPY
Sbjct: 54 MTIAGGVGDAQQLVRIINVECNLYEIRRGQKISVGAAATI----LSNYLNQNRFSPYYVQ 109
Query: 59 MLIAGHDPEEGPQLFFIDYL-ASLIEIPYITHGYPGIVTLSIM 100
+L+ G D GP ++ +D + +E +++ G + ++
Sbjct: 110 LLVGGVDT-SGPSVYSVDAAGGATLEENFVSTGSGSLTAYGVL 151
>sp|C3N7K2|PSB2_SULIY Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA G GD + I+ Y++ G +S AAA L +Y P+ +L
Sbjct: 47 MAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQY--KVMPFISEIL 104
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM-GEYH---RSEVQKRLIINV 116
G D E+GPQL+ +D + SLIE Y G + + ++ EY ++ +LI
Sbjct: 105 FGGVD-EKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKA 163
Query: 117 --PNFKVTMVSKDGIKHLPPIKAKNIPEENKGIP 148
+ + + S DGI I K ENK IP
Sbjct: 164 IKASIERDITSGDGIDL--AIMDKKGNYENKFIP 195
>sp|C3MY41|PSB2_SULIM Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA G GD + I+ Y++ G +S AAA L +Y P+ +L
Sbjct: 47 MAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQY--KVMPFISEIL 104
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM-GEYH---RSEVQKRLIINV 116
G D E+GPQL+ +D + SLIE Y G + + ++ EY ++ +LI
Sbjct: 105 FGGVD-EKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKA 163
Query: 117 --PNFKVTMVSKDGIKHLPPIKAKNIPEENKGIP 148
+ + + S DGI I K ENK IP
Sbjct: 164 IKASIERDITSGDGIDL--AIMDKKGNYENKFIP 195
>sp|C3MRE5|PSB2_SULIL Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA G GD + I+ Y++ G +S AAA L +Y P+ +L
Sbjct: 47 MAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQY--KVMPFISEIL 104
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM-GEYH---RSEVQKRLIINV 116
G D E+GPQL+ +D + SLIE Y G + + ++ EY ++ +LI
Sbjct: 105 FGGVD-EKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKA 163
Query: 117 --PNFKVTMVSKDGIKHLPPIKAKNIPEENKGIP 148
+ + + S DGI I K ENK IP
Sbjct: 164 IKASIERDITSGDGIDL--AIMDKKGNYENKFIP 195
>sp|C4KIR0|PSB2_SULIK Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=psmB2 PE=3 SV=1
Length = 196
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA G GD + I+ Y++ G +S AAA L +Y P+ +L
Sbjct: 47 MAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQY--KVMPFISEIL 104
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM-GEYH---RSEVQKRLIINV 116
G D E+GPQL+ +D + SLIE Y G + + ++ EY ++ +LI
Sbjct: 105 FGGVD-EKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKA 163
Query: 117 --PNFKVTMVSKDGIKHLPPIKAKNIPEENKGIP 148
+ + + S DGI I K ENK IP
Sbjct: 164 IKASIERDITSGDGIDL--AIMDKKGNYENKFIP 195
>sp|D2PDG6|PSB2_SULID Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.D.8.5
/ Lassen #2) GN=psmB2 PE=3 SV=1
Length = 196
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA G GD + I+ Y++ G +S AAA L +Y P+ +L
Sbjct: 47 MAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQY--KVMPFISEIL 104
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM-GEYH---RSEVQKRLIINV 116
G D E+GPQL+ +D + SLIE Y G + + ++ EY ++ +LI
Sbjct: 105 FGGVD-EKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKA 163
Query: 117 --PNFKVTMVSKDGIKHLPPIKAKNIPEENKGIP 148
+ + + S DGI I K ENK IP
Sbjct: 164 IKASIERDITSGDGIDL--AIMDKKGNYENKFIP 195
>sp|C3MZI0|PSB2_SULIA Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.27)
GN=psmB2 PE=3 SV=1
Length = 196
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA G GD + I+ Y++ G +S AAA L +Y P+ +L
Sbjct: 47 MAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQY--KVMPFISEIL 104
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM-GEYH---RSEVQKRLIINV 116
G D E+GPQL+ +D + SLIE Y G + + ++ EY ++ +LI
Sbjct: 105 FGGVD-EKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKA 163
Query: 117 --PNFKVTMVSKDGIKHLPPIKAKNIPEENKGIP 148
+ + + S DGI I K ENK IP
Sbjct: 164 IKASIERDITSGDGIDL--AIMDKKGNYENKFIP 195
>sp|C3NFX2|PSB1_SULIN Proteasome subunit beta 1 OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
MA G GD + I+ Y++ G +S AAA L +Y P+ +L
Sbjct: 47 MAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQY--KVMPFISEIL 104
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM-GEYH---RSEVQKRLIINV 116
G D E+GPQL+ +D + SLIE Y G + + ++ EY ++ +LI
Sbjct: 105 FGGVD-EKGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKA 163
Query: 117 --PNFKVTMVSKDGIKHLPPIKAKNIPEENKGIP 148
+ + + S DGI I K ENK IP
Sbjct: 164 IKASIERDITSGDGIDL--AIMDKKGNYENKFIP 195
>sp|Q46G14|PSB_METBF Proteasome subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmB PE=3 SV=1
Length = 211
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 24/159 (15%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
M G GD Q + QLYKMR ++ + A ++ +L S P
Sbjct: 52 MTTAGSVGDAQQLVRLVNVESQLYKMRRNESMTIKGIATL----MSNFLNSNRYYPMMVQ 107
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGI-VTLSIMGEYHRSEV--------- 108
+LI G D + GP ++ +D L IE I+ G + ++ + +R ++
Sbjct: 108 LLIGGVD-KNGPGIYSLDALGGSIEETRISATGSGSPMAYGVLEDQYREDMTVKEGLDLA 166
Query: 109 -------QKRLIINVPNFKVTMVSKDGIKHLPPIKAKNI 140
KR + N V +++K+ + L P + K+I
Sbjct: 167 IRAIHNATKRDSASGENIDVVVITKEAFRRLDPEEVKSI 205
>sp|Q9V0N9|PSB2_PYRAB Proteasome subunit beta 2 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQL--AEYLRSRSPYNCN 58
+A GD GD + + +LY ++G +S +A A L A L PY
Sbjct: 53 IAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARML----PYLAW 108
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSEVQKRLIINV-- 116
L+ G D E P+L+ +D + + E Y+ G S++ +R +++ R I +
Sbjct: 109 FLVGGFD--EKPRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAV 166
Query: 117 ----PNFKVTMVSKDGI 129
K + S DGI
Sbjct: 167 EAINSAIKRDVFSGDGI 183
>sp|D3E0A3|PSB_METRM Proteasome subunit beta OS=Methanobrevibacter ruminantium (strain
ATCC 35063 / DSM 1093 / JCM 13430 / M1) GN=psmB PE=3
SV=1
Length = 207
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 22/157 (14%)
Query: 3 VTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIA 62
+ G D + I+ LY++RNG ++S AAA + L SP LI
Sbjct: 54 IAGSVADAQTLMKVISAETSLYRLRNGKDISLEAAAAVSSNIL-----HSSPAYVQTLIG 108
Query: 63 GHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEY--------HRSEVQKRLI- 113
G D + G ++ +D +I+ +I+ G ++ + +EV R I
Sbjct: 109 GVD-DTGASIYSLDAAGGMIKDTFISTGSGSTFAYGVLEDRFYEDITVEEATEVAIRAIK 167
Query: 114 -------INVPNFKVTMVSKDGIKHLPPIKAKNIPEE 143
+ F V V+KDG K L + I E+
Sbjct: 168 AATERDTFSGNGFLVANVTKDGFKMLEKEEVDAIIEK 204
>sp|B8D673|PSB1_DESK1 Proteasome subunit beta 1 OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=psmB1 PE=3 SV=1
Length = 202
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 2 AVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLI 61
+ GD V+ AKN Y++++G E+ R+ A L Y +P +++
Sbjct: 54 GLMGDVNFLVKVLRLEAKN---YELQHGREIKTRSLAKLLSVILYSY--KLAPMLTEVVV 108
Query: 62 AGHDPEEGPQLFFIDYLASLIEIPYITHG 90
G+D EEGP L+ +D + S+IE Y+ G
Sbjct: 109 GGYD-EEGPSLYILDPVGSVIEEKYVAVG 136
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
M V+G D ++ + + I+LY+M N + S R + L+ L S PY
Sbjct: 68 MTVSGLVADAQILSDVLREEIRLYEMTNKVKPSVR----FVASLLSNILFSSKFFPYIVQ 123
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSEVQKRLIINVPN 118
+++ G+D + P+L+ +D S+ E Y G + ++ E +R ++ I V
Sbjct: 124 LIVGGYDTQ--PRLYTLDLFGSITEDKYTATGSGSPIAYGVLEERYREDLSVEEAIKVAT 181
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
M + G GD Q A I LY++R E++ AA+ L+ YL PY
Sbjct: 54 MTIAGGVGDAQQLARIITVECNLYQIRRSREITVGAASTL----LSNYLNQNRYFPYYVQ 109
Query: 59 MLIAGHDPEEGPQLFFIDYLAS 80
+L+ G D + GP ++ +D +
Sbjct: 110 LLVGGID-DHGPSVYSVDAMGG 130
>sp|Q8PZ04|PSB_METMA Proteasome subunit beta OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmB PE=3 SV=1
Length = 210
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 24/158 (15%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
M G GD Q ++ QLYKMR ++ + A ++ +L + P
Sbjct: 52 MTTAGSVGDAQQLVRLVSVESQLYKMRRNESMTIKGIATL----MSNFLNANRYYPMMVQ 107
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGI-VTLSIMGEYHRSEV--------- 108
+LI G D + GP ++ +D + IE I+ G + ++ + +R ++
Sbjct: 108 LLIGGVD-KNGPAIYSLDPMGGSIEETRISATGSGSPMAYGVLEDQYREDIAVKEGLDLA 166
Query: 109 -------QKRLIINVPNFKVTMVSKDGIKHLPPIKAKN 139
KR + N V +++K+ K L P + K+
Sbjct: 167 IRAIHNATKRDSASGENIDVVVITKEAFKRLDPEEVKS 204
>sp|Q9YES4|PSB1_AERPE Proteasome subunit beta 1 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB1 PE=3
SV=2
Length = 203
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+A G GD + ++L + G + R A + L Y P+N +
Sbjct: 48 IAFAGLYGDMGGLVRIVEGQMRLASLETGKPATVRNVAKFLSSLLYSY--KFFPFNVEAI 105
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIM 100
+ G DP P+L+ +D L S+IE Y+ G ++
Sbjct: 106 VGGIDPGGEPKLYVLDPLGSIIEEDYVAAGTGATTAFGLL 145
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,573,665
Number of Sequences: 539616
Number of extensions: 2363806
Number of successful extensions: 5546
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 5451
Number of HSP's gapped (non-prelim): 147
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)