Query psy12630
Match_columns 160
No_of_seqs 162 out of 1151
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 15:33:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03758 proteasome_beta_type_2 100.0 1.9E-33 4.1E-38 214.7 17.0 133 1-133 44-192 (193)
2 cd03759 proteasome_beta_type_3 100.0 1E-32 2.2E-37 211.0 15.4 130 1-132 46-192 (195)
3 cd03761 proteasome_beta_type_5 100.0 1.8E-32 3.9E-37 208.5 16.4 129 1-132 43-187 (188)
4 KOG0177|consensus 100.0 8.4E-33 1.8E-37 205.1 11.2 138 1-138 44-197 (200)
5 cd03760 proteasome_beta_type_4 100.0 1.2E-31 2.7E-36 205.2 16.5 134 1-134 45-197 (197)
6 PTZ00488 Proteasome subunit be 100.0 4.4E-32 9.6E-37 214.3 13.4 138 1-141 82-235 (247)
7 cd03757 proteasome_beta_type_1 100.0 9.3E-32 2E-36 208.1 14.8 130 1-132 51-205 (212)
8 cd03764 proteasome_beta_archea 100.0 2.7E-31 5.9E-36 201.7 16.3 130 1-133 43-188 (188)
9 cd03750 proteasome_alpha_type_ 100.0 2.1E-31 4.6E-36 208.0 15.1 140 1-141 69-226 (227)
10 TIGR03690 20S_bact_beta protea 100.0 1.2E-31 2.5E-36 208.6 12.8 141 1-141 45-211 (219)
11 COG0638 PRE1 20S proteasome, a 100.0 2.5E-31 5.4E-36 208.8 13.9 140 1-141 73-229 (236)
12 TIGR03634 arc_protsome_B prote 100.0 1.4E-30 3.1E-35 197.2 15.5 126 1-129 44-185 (185)
13 cd03763 proteasome_beta_type_7 100.0 2.1E-30 4.6E-35 197.1 16.3 131 1-135 43-189 (189)
14 cd03762 proteasome_beta_type_6 100.0 2.1E-30 4.5E-35 196.9 16.1 128 1-131 43-186 (188)
15 cd03765 proteasome_beta_bacter 100.0 3.5E-30 7.5E-35 202.1 15.5 134 1-135 46-208 (236)
16 PTZ00246 proteasome subunit al 100.0 1.6E-30 3.5E-35 206.1 13.6 141 1-141 74-238 (253)
17 TIGR03633 arc_protsome_A prote 100.0 8.2E-30 1.8E-34 198.6 16.6 135 1-136 71-224 (224)
18 cd01912 proteasome_beta protea 100.0 2E-29 4.3E-34 191.2 16.3 130 1-132 43-188 (189)
19 PRK03996 proteasome subunit al 100.0 8.2E-30 1.8E-34 200.6 14.5 140 1-141 78-236 (241)
20 cd03755 proteasome_alpha_type_ 100.0 3E-29 6.5E-34 193.4 15.1 124 1-124 69-207 (207)
21 KOG0176|consensus 100.0 1.3E-29 2.8E-34 189.6 11.4 140 1-141 76-238 (241)
22 cd03749 proteasome_alpha_type_ 100.0 1.3E-28 2.8E-33 190.4 15.5 124 1-125 67-211 (211)
23 cd03751 proteasome_alpha_type_ 100.0 1.7E-28 3.6E-33 190.0 15.2 105 1-106 72-178 (212)
24 KOG0181|consensus 100.0 1.8E-29 3.9E-34 188.4 8.7 140 1-141 74-230 (233)
25 TIGR03691 20S_bact_alpha prote 100.0 1E-28 2.2E-33 193.1 12.7 140 1-140 62-227 (228)
26 cd03752 proteasome_alpha_type_ 100.0 3.5E-28 7.6E-33 188.2 14.5 124 1-124 72-213 (213)
27 cd03754 proteasome_alpha_type_ 100.0 7.8E-28 1.7E-32 186.6 15.1 106 1-106 71-178 (215)
28 cd03756 proteasome_alpha_arche 100.0 1.1E-27 2.5E-32 185.0 15.2 124 1-125 70-210 (211)
29 KOG0179|consensus 100.0 3.9E-28 8.4E-33 182.9 11.6 130 1-132 72-228 (235)
30 KOG0182|consensus 100.0 3.5E-28 7.7E-33 183.5 10.9 141 1-141 78-239 (246)
31 cd01911 proteasome_alpha prote 100.0 1.9E-27 4E-32 183.5 13.8 123 1-124 69-209 (209)
32 cd03753 proteasome_alpha_type_ 99.9 5.3E-27 1.1E-31 181.6 15.3 123 1-124 69-213 (213)
33 cd01906 proteasome_protease_Hs 99.9 6.3E-27 1.4E-31 176.0 13.9 124 1-124 43-182 (182)
34 KOG0183|consensus 99.9 8.1E-28 1.8E-32 181.8 8.9 141 1-141 72-230 (249)
35 PF00227 Proteasome: Proteasom 99.9 7.2E-26 1.6E-30 171.3 13.8 124 1-124 48-190 (190)
36 KOG0178|consensus 99.9 4.3E-26 9.4E-31 172.1 11.9 141 1-141 74-237 (249)
37 KOG0175|consensus 99.9 2.8E-24 6E-29 166.3 10.3 137 2-141 115-267 (285)
38 KOG0180|consensus 99.9 1.4E-23 3.1E-28 154.1 11.4 128 1-130 51-195 (204)
39 KOG0185|consensus 99.9 1E-23 2.2E-28 161.4 10.3 139 1-140 84-243 (256)
40 KOG0863|consensus 99.9 4.7E-23 1E-27 157.5 13.2 140 1-141 72-233 (264)
41 KOG0174|consensus 99.9 2.4E-21 5.2E-26 144.8 10.8 138 1-141 62-217 (224)
42 KOG0184|consensus 99.8 3.1E-20 6.8E-25 141.3 9.9 140 1-141 76-235 (254)
43 KOG0173|consensus 99.8 1.3E-19 2.8E-24 140.1 12.8 133 1-137 80-228 (271)
44 cd01901 Ntn_hydrolase The Ntn 99.8 2.6E-19 5.6E-24 130.4 12.7 104 1-106 43-147 (164)
45 PRK05456 ATP-dependent proteas 99.7 2.4E-17 5.3E-22 123.8 11.8 111 1-123 45-171 (172)
46 cd01913 protease_HslV Protease 99.7 1.1E-16 2.4E-21 119.8 11.0 109 1-122 44-169 (171)
47 TIGR03692 ATP_dep_HslV ATP-dep 99.7 3E-16 6.5E-21 117.6 10.5 110 1-123 44-170 (171)
48 COG5405 HslV ATP-dependent pro 96.4 0.033 7.2E-07 41.4 8.5 116 2-131 49-172 (178)
49 COG3484 Predicted proteasome-t 89.3 8.7 0.00019 29.9 10.3 129 2-131 48-205 (255)
50 PF01242 PTPS: 6-pyruvoyl tetr 47.9 41 0.00089 23.2 4.3 46 4-49 43-98 (123)
51 PF12385 Peptidase_C70: Papain 42.1 79 0.0017 23.6 5.1 42 35-81 95-148 (166)
52 COG4990 Uncharacterized protei 41.7 19 0.00041 27.5 1.8 19 59-80 151-169 (195)
53 COG4537 ComGC Competence prote 37.5 72 0.0016 22.0 3.9 28 10-37 49-77 (107)
54 PF04539 Sigma70_r3: Sigma-70 37.0 68 0.0015 19.9 3.7 30 15-44 4-33 (78)
55 PF10632 He_PIG_assoc: He_PIG 34.3 51 0.0011 17.3 2.2 23 57-80 4-26 (29)
56 PF01726 LexA_DNA_bind: LexA D 32.9 1E+02 0.0022 19.0 3.9 20 23-42 17-36 (65)
57 PF13778 DUF4174: Domain of un 30.5 49 0.0011 23.0 2.4 22 108-129 69-90 (118)
58 TIGR00039 6PTHBS 6-pyruvoyl te 30.2 62 0.0013 22.6 2.9 45 4-48 45-97 (124)
59 PRK04043 tolB translocation pr 28.8 1.7E+02 0.0037 24.9 5.9 46 34-81 131-180 (419)
60 PRK11508 sulfur transfer prote 28.6 2E+02 0.0043 20.0 5.1 34 8-45 41-74 (109)
61 KOG1559|consensus 28.2 1.6E+02 0.0035 23.8 5.1 54 6-66 282-335 (340)
62 PHA02754 hypothetical protein; 28.2 85 0.0019 19.4 2.8 38 92-131 4-57 (67)
63 KOG3652|consensus 27.0 1.3E+02 0.0029 27.8 4.9 63 5-80 194-260 (1215)
64 PF14593 PH_3: PH domain; PDB: 26.3 69 0.0015 22.0 2.5 17 68-84 36-52 (104)
65 PF08958 DUF1871: Domain of un 24.9 2E+02 0.0044 18.6 4.5 33 9-45 36-68 (79)
66 COG2096 cob(I)alamin adenosylt 24.7 2.1E+02 0.0045 21.9 5.0 41 10-50 125-165 (184)
67 TIGR03112 6_pyr_pter_rel 6-pyr 24.6 2.4E+02 0.0053 19.4 6.3 45 5-50 39-91 (113)
68 TIGR03367 queuosine_QueD queuo 22.2 1.1E+02 0.0024 20.1 2.9 42 4-45 43-90 (92)
69 PF11211 DUF2997: Protein of u 21.7 1.4E+02 0.0031 17.4 2.9 32 73-104 3-34 (48)
70 TIGR03342 dsrC_tusE_dsvC sulfu 21.6 2.8E+02 0.0062 19.1 5.1 34 8-45 40-73 (108)
71 KOG3361|consensus 21.4 94 0.002 22.6 2.4 34 73-106 71-104 (157)
72 TIGR00636 PduO_Nterm ATP:cob(I 20.7 2.6E+02 0.0057 20.9 4.8 41 10-50 117-157 (171)
73 cd01262 PH_PDK1 3-Phosphoinosi 20.4 75 0.0016 21.3 1.7 13 68-80 24-36 (89)
No 1
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-33 Score=214.71 Aligned_cols=133 Identities=59% Similarity=1.059 Sum_probs=121.3
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|+.+|+|.|+++++.+++.|++.++++++++.+++++++++|.++|..|||+|++||||||+++||+||++||+|+
T Consensus 44 ~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~ 123 (193)
T cd03758 44 MACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGT 123 (193)
T ss_pred EEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcc
Confidence 57899999999999999999999999999999999999999999988767447999999999999767999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H------------HHHHHhhcCCCEEEEEEcCCCeEEcC
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E------------VQKRLIINVPNFKVTMVSKDGIKHLP 133 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e------------l~~~~~~s~~~i~i~iitk~g~~~~~ 133 (160)
+.+++++|+|+|+..++++||+.|++ + +..|+..++++++|++|+++|++.++
T Consensus 124 ~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~ 192 (193)
T cd03758 124 LVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDLE 192 (193)
T ss_pred eEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeCC
Confidence 99999999999999999999999997 1 23455578999999999999987643
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-32 Score=210.99 Aligned_cols=130 Identities=19% Similarity=0.309 Sum_probs=118.4
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|+.+|++.++++++.+++.|+++++++|+++.+|++|++++|.+ | .+||+|++||||||+++||+||++||+|+
T Consensus 46 ~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~ly~~-r-~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~ 123 (195)
T cd03759 46 IGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLLYEK-R-FGPYFVEPVVAGLDPDGKPFICTMDLIGC 123 (195)
T ss_pred EEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh-c-CCCceEEEEEEEEcCCCCEEEEEEcCCCc
Confidence 578999999999999999999999999999999999999999999988 7 78999999999999767899999999999
Q ss_pred eeeeC-EEEEecChHHHHHHHhccCCH----H----H--------HHHHhhcCCCEEEEEEcCCCeEEc
Q psy12630 81 LIEIP-YITHGYPGIVTLSIMGEYHRS----E----V--------QKRLIINVPNFKVTMVSKDGIKHL 132 (160)
Q Consensus 81 ~~~~~-~~a~G~gs~~a~~~Le~~~~~----e----l--------~~~~~~s~~~i~i~iitk~g~~~~ 132 (160)
+..++ ++|+|+|+..++++||+.|++ + + ..|+..++++++|++|+++|+++.
T Consensus 124 ~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 192 (195)
T cd03759 124 PSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTR 192 (195)
T ss_pred ccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEE
Confidence 98887 999999999999999999997 1 2 234456899999999999997653
No 3
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-32 Score=208.49 Aligned_cols=129 Identities=19% Similarity=0.333 Sum_probs=119.4
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|+.+|++.|++++|.+++.|++++|++|+++.+|+++++++|.+ | .+||+|++||||||+ +||+||++||+|+
T Consensus 43 ~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~-~-~~~~~v~~li~G~D~-~g~~L~~~dp~G~ 119 (188)
T cd03761 43 GTMAGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQY-K-GMGLSMGTMICGWDK-TGPGLYYVDSDGT 119 (188)
T ss_pred EEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc-C-CCCeEEEEEEEEEeC-CCCEEEEEcCCce
Confidence 578999999999999999999999999999999999999999999999 5 569999999999996 8999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCHH----------------HHHHHhhcCCCEEEEEEcCCCeEEc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRSE----------------VQKRLIINVPNFKVTMVSKDGIKHL 132 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~e----------------l~~~~~~s~~~i~i~iitk~g~~~~ 132 (160)
+.+++++++|+|+.+++++||+.|+++ ...|++.++++++|++|+++|+++.
T Consensus 120 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 120 RLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred EEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 999999999999999999999999981 1334557899999999999998765
No 4
>KOG0177|consensus
Probab=100.00 E-value=8.4e-33 Score=205.13 Aligned_cols=138 Identities=59% Similarity=1.039 Sum_probs=131.9
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|+-++.+++++++++|+++||+++||+++||++++.+.+++|+.+||.|++++||+|++.||.||++|..|+
T Consensus 44 m~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~ 123 (200)
T KOG0177|consen 44 MATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLAT 123 (200)
T ss_pred eeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----------------HHHHHHhhcCCCEEEEEEcCCCeEEcCCcccc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----------------EVQKRLIINVPNFKVTMVSKDGIKHLPPIKAK 138 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----------------el~~~~~~s~~~i~i~iitk~g~~~~~~~~~~ 138 (160)
..+.+++++|+|+.++.++||++|+| |+++|++++..++.|.+|||||++.++.....
T Consensus 124 ~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~~i~~~ 197 (200)
T KOG0177|consen 124 LVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLDDINFI 197 (200)
T ss_pred cccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceeccccccc
Confidence 99999999999999999999999998 46889999999999999999999998876543
No 5
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-31 Score=205.21 Aligned_cols=134 Identities=20% Similarity=0.370 Sum_probs=119.9
Q ss_pred CceecChhHHHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQ-LYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLA 79 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~-~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G 79 (160)
|+++|+.+|++.+++++|.+++ .|+++++++|+++.+++++++++|.+...+|||+|++||||||+++||+||++||+|
T Consensus 45 ~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G 124 (197)
T cd03760 45 LGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLG 124 (197)
T ss_pred EEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCc
Confidence 5789999999999999999987 577889999999999999999999872258999999999999976799999999999
Q ss_pred ceeeeCEEEEecChHHHHHHHhccCCH--H----------------HHHHHhhcCCCEEEEEEcCCCeEEcCC
Q psy12630 80 SLIEIPYITHGYPGIVTLSIMGEYHRS--E----------------VQKRLIINVPNFKVTMVSKDGIKHLPP 134 (160)
Q Consensus 80 ~~~~~~~~a~G~gs~~a~~~Le~~~~~--e----------------l~~~~~~s~~~i~i~iitk~g~~~~~~ 134 (160)
++.+++++|+|+|+.+++++||+.|++ + ...|++.++++++|++|+++|+++..|
T Consensus 125 ~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 197 (197)
T cd03760 125 TAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEGP 197 (197)
T ss_pred cEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCCC
Confidence 999999999999999999999999996 2 133445789999999999999987654
No 6
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.98 E-value=4.4e-32 Score=214.34 Aligned_cols=138 Identities=20% Similarity=0.279 Sum_probs=127.1
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|+.+|++.++++++.+++.|++++|++|+++.+|++|++++|++ | ..|+.+++||||||+ +||+||++||+|+
T Consensus 82 ~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~-R-~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs 158 (247)
T PTZ00488 82 GTMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNY-K-GMGLSMGTMICGWDK-KGPGLFYVDNDGT 158 (247)
T ss_pred EEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc-C-CCCeeEEEEEEEEeC-CCCEEEEEcCCcc
Confidence 578999999999999999999999999999999999999999999998 7 446777799999996 7899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H------------HHHHHhhcCCCEEEEEEcCCCeEEcCCccccCcc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E------------VQKRLIINVPNFKVTMVSKDGIKHLPPIKAKNIP 141 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e------------l~~~~~~s~~~i~i~iitk~g~~~~~~~~~~~~~ 141 (160)
+.+++++++|+|+..++++||+.|++ + +..|++.++++++|++|+++|++.++++|++.+.
T Consensus 159 ~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l 235 (247)
T PTZ00488 159 RLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLH 235 (247)
T ss_pred eeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHH
Confidence 99999999999999999999999998 1 2344557899999999999999999999999987
No 7
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.98 E-value=9.3e-32 Score=208.15 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=118.4
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+++.++.+++.|++++|++|+++.+++++++++|.+ | .+||+|++||||||++++|+||++||+|+
T Consensus 51 ~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly~~-R-~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~ 128 (212)
T cd03757 51 LGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSR-R-FFPYYVFNILAGIDEEGKGVVYSYDPVGS 128 (212)
T ss_pred EEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHHHhh-c-CCCeEEEEEEEEEcCCCCEEEEEEcCccC
Confidence 578999999999999999999999999999999999999999999987 7 68999999999999767899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCC---------H----H----H--------HHHHhhcCCCEEEEEEcCCCeEEc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHR---------S----E----V--------QKRLIINVPNFKVTMVSKDGIKHL 132 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~---------~----e----l--------~~~~~~s~~~i~i~iitk~g~~~~ 132 (160)
+.+++++|+|+|+.+++++||+.|+ + + + ..|++.++++++|++||++|+++.
T Consensus 129 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~ 205 (212)
T cd03757 129 YERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEE 205 (212)
T ss_pred eeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEE
Confidence 9999999999999999999999884 4 1 2 334457899999999999997654
No 8
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.98 E-value=2.7e-31 Score=201.69 Aligned_cols=130 Identities=28% Similarity=0.470 Sum_probs=120.1
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
++++|+.+|++.+.++++.+++.|++.++++++++.+++++++++|.+ + +|||+|++||||+|+ ++|+||++||+|+
T Consensus 43 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~-~~P~~~~~lvaG~d~-~~~~ly~~D~~G~ 119 (188)
T cd03764 43 MTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSS-K-YFPYIVQLLIGGVDE-EGPHLYSLDPLGS 119 (188)
T ss_pred EEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc-C-CCCcEEEEEEEEEeC-CCCEEEEECCCCC
Confidence 578999999999999999999999999999999999999999999998 6 899999999999997 7899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCHH--------H--------HHHHhhcCCCEEEEEEcCCCeEEcC
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRSE--------V--------QKRLIINVPNFKVTMVSKDGIKHLP 133 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~e--------l--------~~~~~~s~~~i~i~iitk~g~~~~~ 133 (160)
+.+++++|+|+|+.+++++||+.|+++ + ..|++.++++++|++|+++|+++++
T Consensus 120 ~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~~ 188 (188)
T cd03764 120 IIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKELE 188 (188)
T ss_pred EEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeCC
Confidence 999999999999999999999999871 1 2344568999999999999988764
No 9
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.1e-31 Score=208.02 Aligned_cols=140 Identities=19% Similarity=0.242 Sum_probs=126.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.+++.++.+++.|++++|++|+++.++++|++++|.++| ++|||+|++||||||+ .||+||++||+
T Consensus 69 ~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~ 147 (227)
T cd03750 69 MVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPS 147 (227)
T ss_pred EEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCC
Confidence 57899999999999999999999999999999999999999999998887 3799999999999996 69999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHH-------hhcCCCEEEEEEcCC-CeEEcCCccccCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRL-------IINVPNFKVTMVSKD-GIKHLPPIKAKNIP 141 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~-------~~s~~~i~i~iitk~-g~~~~~~~~~~~~~ 141 (160)
|++.+++++|+|+|+..++++||++|++ + ++.+. .+++++++|++|+++ |++.+++++++++.
T Consensus 148 G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 148 GSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred CCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 9999999999999999999999999997 1 22211 147899999999996 79999999987764
No 10
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.97 E-value=1.2e-31 Score=208.57 Aligned_cols=141 Identities=15% Similarity=0.221 Sum_probs=124.0
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc-cCCCceEeEEEEEEcCC-CCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR-SRSPYNCNMLIAGHDPE-EGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r-~~rP~~vs~ii~G~D~~-~gp~Ly~vD~~ 78 (160)
|+++|+.+|++.++++++.+++.|+++++++|+++.+|++|++++|.+++ .+|||+|++||||||++ ++|+||++||+
T Consensus 45 ~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~ 124 (219)
T TIGR03690 45 VGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVT 124 (219)
T ss_pred EEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCC
Confidence 57899999999999999999999999999999999999999999998754 48999999999999964 67999999999
Q ss_pred cc-eeeeCEEEEecChHHHHHHHhccCCHH--------HHHH--------HhhcCCC-------EEEEEEcCCCeEEcCC
Q psy12630 79 AS-LIEIPYITHGYPGIVTLSIMGEYHRSE--------VQKR--------LIINVPN-------FKVTMVSKDGIKHLPP 134 (160)
Q Consensus 79 G~-~~~~~~~a~G~gs~~a~~~Le~~~~~e--------l~~~--------~~~s~~~-------i~i~iitk~g~~~~~~ 134 (160)
|+ +..++++|+|+|++.++++||+.|+++ ++.+ +..+++. ++|++|+++|++++++
T Consensus 125 G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~ 204 (219)
T TIGR03690 125 GGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPE 204 (219)
T ss_pred CCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCH
Confidence 95 777799999999999999999999971 2222 2234543 3999999999999999
Q ss_pred ccccCcc
Q psy12630 135 IKAKNIP 141 (160)
Q Consensus 135 ~~~~~~~ 141 (160)
+|++.+.
T Consensus 205 ~ei~~~~ 211 (219)
T TIGR03690 205 SELEELA 211 (219)
T ss_pred HHHHHHH
Confidence 9999887
No 11
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=208.84 Aligned_cols=140 Identities=26% Similarity=0.396 Sum_probs=126.4
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|+.+|+|.|+++++.+++.|++.+|++|+++.+++++++++|.++++.|||+|++||||+|+ ++|+||++||+|+
T Consensus 73 ~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~ 151 (236)
T COG0638 73 MAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGS 151 (236)
T ss_pred EEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCc
Confidence 579999999999999999999999999999999999999999999999554599999999999998 8999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----HH--------HHHhhcCCCEEEEEEcC-CCeEEcCCccccCcc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----VQ--------KRLIINVPNFKVTMVSK-DGIKHLPPIKAKNIP 141 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~--------~~~~~s~~~i~i~iitk-~g~~~~~~~~~~~~~ 141 (160)
+.+++++|+|+|+..++++||+.|++ | ++ +|+..++++++|++|++ +|++.+++++++.+.
T Consensus 152 ~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~ 229 (236)
T COG0638 152 YNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLL 229 (236)
T ss_pred eeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHH
Confidence 99999999999999999999999987 2 22 22334788899999999 689999998877554
No 12
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.97 E-value=1.4e-30 Score=197.23 Aligned_cols=126 Identities=26% Similarity=0.479 Sum_probs=116.6
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+.++++.+++.|++.++++++++.++++|++++|.+ + +|||+|++||||||+ +||+||++||+|+
T Consensus 44 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~-~-~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~ 120 (185)
T TIGR03634 44 MTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSN-R-FFPFIVQLLVGGVDE-EGPHLYSLDPAGG 120 (185)
T ss_pred EEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc-C-CCCeEEEEEEEEEeC-CCCEEEEECCCCC
Confidence 578999999999999999999999999999999999999999999998 6 899999999999996 7899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCHH----------------HHHHHhhcCCCEEEEEEcCCCe
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRSE----------------VQKRLIINVPNFKVTMVSKDGI 129 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~e----------------l~~~~~~s~~~i~i~iitk~g~ 129 (160)
+.+++++++|+|+.+++++||+.|+++ ..+|.+.++++++|++|+++|+
T Consensus 121 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 121 IIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred eEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 999999999999999999999999971 1234456899999999999985
No 13
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.1e-30 Score=197.10 Aligned_cols=131 Identities=20% Similarity=0.359 Sum_probs=120.1
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+.+.++.+++.|+++++++++++.++++|++.+|.+ + .||+|++||||||+ +||+||++||+|+
T Consensus 43 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~-~--~p~~v~~ivaG~d~-~g~~ly~~d~~G~ 118 (189)
T cd03763 43 CCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRY-Q--GHIGAALVLGGVDY-TGPHLYSIYPHGS 118 (189)
T ss_pred EEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc-C--CccceeEEEEeEcC-CCCEEEEECCCCC
Confidence 578999999999999999999999999999999999999999999988 4 49999999999996 6899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCHH--------H--------HHHHhhcCCCEEEEEEcCCCeEEcCCc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRSE--------V--------QKRLIINVPNFKVTMVSKDGIKHLPPI 135 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~e--------l--------~~~~~~s~~~i~i~iitk~g~~~~~~~ 135 (160)
+.+++++++|+|+..++++||+.|+++ + ..|++.++++++|++|+++|+++.+|+
T Consensus 119 ~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~~ 189 (189)
T cd03763 119 TDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRNY 189 (189)
T ss_pred EEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEecCC
Confidence 999999999999999999999999981 1 234456899999999999999988774
No 14
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.1e-30 Score=196.87 Aligned_cols=128 Identities=17% Similarity=0.284 Sum_probs=117.9
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|+.+|++.+.++++.+++.|++.++++++++.+++++++++|.+ | |||+|++||||+|+++||+||++||.|+
T Consensus 43 ~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~-~--~~~~~~~ii~G~d~~~gp~ly~~d~~G~ 119 (188)
T cd03762 43 CCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNY-K--EMLSAGIIVAGWDEQNGGQVYSIPLGGM 119 (188)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhc-c--ccceeeEEEEEEcCCCCcEEEEECCCCC
Confidence 578999999999999999999999999999999999999999999988 3 6999999999999767899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCHH----------------HHHHHhhcCCCEEEEEEcCCCeEE
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRSE----------------VQKRLIINVPNFKVTMVSKDGIKH 131 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~e----------------l~~~~~~s~~~i~i~iitk~g~~~ 131 (160)
+.+++++++|+|+..++++||+.|+++ ...|++.++++++|++|+++|+++
T Consensus 120 ~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 120 LIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred EEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 999999999999999999999999971 234455789999999999999865
No 15
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=3.5e-30 Score=202.09 Aligned_cols=134 Identities=16% Similarity=0.234 Sum_probs=115.7
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHh-c--c-----CCCceEeEEEEEEcCCCCCE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGY-ELSPRAAAYYTRKQLAEYL-R--S-----RSPYNCNMLIAGHDPEEGPQ 71 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~-~~~~~~la~~ls~~l~~~~-r--~-----~rP~~vs~ii~G~D~~~gp~ 71 (160)
|++||..+|+|.+++++|.+++.|++++|+ +++++.+|+++++++++.+ | + .|||+|++||||||++.||+
T Consensus 46 ~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~ 125 (236)
T cd03765 46 LLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPR 125 (236)
T ss_pred EEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCE
Confidence 578999999999999999999999999999 8999999999999977632 2 1 38999999999999667999
Q ss_pred EEEEcCCcceeee----CEEEEecChHHHHHHHhccCCH----H----HH--------HHHhhcCCCEEEEEEcCCCeEE
Q psy12630 72 LFFIDYLASLIEI----PYITHGYPGIVTLSIMGEYHRS----E----VQ--------KRLIINVPNFKVTMVSKDGIKH 131 (160)
Q Consensus 72 Ly~vD~~G~~~~~----~~~a~G~gs~~a~~~Le~~~~~----e----l~--------~~~~~s~~~i~i~iitk~g~~~ 131 (160)
||++||+|++.++ +|+|+|. +..++++||+.|++ + ++ .|+..++++|+|++|+|+|+++
T Consensus 126 LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~ 204 (236)
T cd03765 126 LFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQV 204 (236)
T ss_pred EEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeee
Confidence 9999999999998 5689996 79999999999998 1 22 2334689999999999999877
Q ss_pred cCCc
Q psy12630 132 LPPI 135 (160)
Q Consensus 132 ~~~~ 135 (160)
....
T Consensus 205 ~~~~ 208 (236)
T cd03765 205 GHYR 208 (236)
T ss_pred eeeE
Confidence 4433
No 16
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.97 E-value=1.6e-30 Score=206.09 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=127.9
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|+.+|++.+.+.++.+++.|++.++++++++.+++.+++.++.++| .+|||+|++||||||+++||+||++||+
T Consensus 74 ~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~ 153 (253)
T PTZ00246 74 CAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPS 153 (253)
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCC
Confidence 57899999999999999999999999999999999999999999998876 4799999999999997679999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH----H----HHHH--------HhhcCCCEEEEEEcCCC------eEEcCCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKR--------LIINVPNFKVTMVSKDG------IKHLPPIK 136 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~--------~~~s~~~i~i~iitk~g------~~~~~~~~ 136 (160)
|++.+++++|+|+|+..++++||+.|++ + ++.+ ...++++++|++|+++| ++.++++|
T Consensus 154 Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~e 233 (253)
T PTZ00246 154 GNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKE 233 (253)
T ss_pred CCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHH
Confidence 9999999999999999999999999997 1 2222 22468999999999874 89999999
Q ss_pred ccCcc
Q psy12630 137 AKNIP 141 (160)
Q Consensus 137 ~~~~~ 141 (160)
++++.
T Consensus 234 i~~~l 238 (253)
T PTZ00246 234 IAELL 238 (253)
T ss_pred HHHHH
Confidence 99887
No 17
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.97 E-value=8.2e-30 Score=198.62 Aligned_cols=135 Identities=19% Similarity=0.253 Sum_probs=122.5
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|++||+.+|++.+.+.++.++..|+++++++++++.++++|++++|.++| ++|||+|++||||+|+ +||+||++||.
T Consensus 71 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~ 149 (224)
T TIGR03633 71 AATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPS 149 (224)
T ss_pred EEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCC
Confidence 57899999999999999999999999999999999999999999998877 4799999999999995 79999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH----H----HHHH-------HhhcCCCEEEEEEcCCC--eEEcCCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKR-------LIINVPNFKVTMVSKDG--IKHLPPIK 136 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~-------~~~s~~~i~i~iitk~g--~~~~~~~~ 136 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+ ...++++++|++|+++| ++.++++|
T Consensus 150 G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 150 GALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVEDKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred CCeecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 9999999999999999999999999997 1 2222 23578999999999988 88888765
No 18
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2e-29 Score=191.21 Aligned_cols=130 Identities=32% Similarity=0.584 Sum_probs=118.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|+.+|++.+.++++.+++.|++.++++++++.+++++++++|.+ + +|||++++||||+|++++|+||++||+|+
T Consensus 43 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~-~~P~~~~~iv~G~d~~~~~~l~~id~~G~ 120 (189)
T cd01912 43 LGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSY-R-GFPYYVSLIVGGVDKGGGPFLYYVDPLGS 120 (189)
T ss_pred EEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-C-CCCeEEEEEEEEEcCCCCeEEEEECCCCC
Confidence 478999999999999999999999999999999999999999999999 4 38999999999999767999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----H--------HHHHhhcCCCEEEEEEcCCCeEEc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----V--------QKRLIINVPNFKVTMVSKDGIKHL 132 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l--------~~~~~~s~~~i~i~iitk~g~~~~ 132 (160)
+.+++++++|+++.+++++||+.|++ + + ..+++.++++++|++|+++|+++.
T Consensus 121 ~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 121 LIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred eEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 99999999999999999999999997 1 1 234446899999999999998754
No 19
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.97 E-value=8.2e-30 Score=200.64 Aligned_cols=140 Identities=15% Similarity=0.237 Sum_probs=126.7
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.+++.++.+++.|+++++++++++.+++++++.+|.++| +.|||+|++||||||+ .||+||++||+
T Consensus 78 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~ 156 (241)
T PRK03996 78 AASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPS 156 (241)
T ss_pred EEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCC
Confidence 57899999999999999999999999999999999999999999998877 4799999999999996 78999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCHH--------HHHHH-------hhcCCCEEEEEEcCCC--eEEcCCccccCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRSE--------VQKRL-------IINVPNFKVTMVSKDG--IKHLPPIKAKNIP 141 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~e--------l~~~~-------~~s~~~i~i~iitk~g--~~~~~~~~~~~~~ 141 (160)
|++.+++++|+|+|+..++++||+.|+++ ++.+. ..++++++|++|+++| ++.+++++++.+.
T Consensus 157 G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~ 236 (241)
T PRK03996 157 GAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYL 236 (241)
T ss_pred CCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHH
Confidence 99999999999999999999999999971 22221 2478999999999987 9999999887765
No 20
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=3e-29 Score=193.39 Aligned_cols=124 Identities=14% Similarity=0.206 Sum_probs=112.0
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|++||+.+|++.+.++++.+++.|++++|++|+++.+++++++++|+++| ++|||+|++||||||+++||+||++||+
T Consensus 69 ~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~ 148 (207)
T cd03755 69 LAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPS 148 (207)
T ss_pred EEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCC
Confidence 57899999999999999999999999999999999999999999988877 4799999999999997679999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHHh-----hcCCCEEEEEE
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRLI-----INVPNFKVTMV 124 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~~-----~s~~~i~i~ii 124 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+.+ .+++++||+++
T Consensus 149 G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~~~~~e~~~~ 207 (207)
T cd03755 149 GTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQSGSKNIELAVM 207 (207)
T ss_pred cCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 9999999999999999999999999997 2 233322 36788998874
No 21
>KOG0176|consensus
Probab=99.96 E-value=1.3e-29 Score=189.59 Aligned_cols=140 Identities=20% Similarity=0.259 Sum_probs=125.2
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcc-------CCCceEeEEEEEEcCCCCCEEE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRS-------RSPYNCNMLIAGHDPEEGPQLF 73 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~-------~rP~~vs~ii~G~D~~~gp~Ly 73 (160)
|++||+.+|++++++..|.++++|+|.||++|+++.+++.++++-..+--. .|||||++|+||+|+ .||+||
T Consensus 76 ca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~ 154 (241)
T KOG0176|consen 76 CAMSGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLY 154 (241)
T ss_pred eeccccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEE
Confidence 689999999999999999999999999999999999999999987655211 499999999999996 899999
Q ss_pred EEcCCcceeeeCEEEEecChHHHHHHHhccCCHH----HHHHH-----------hhcCCCEEEEEEcCC-CeEEcCCccc
Q psy12630 74 FIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSE----VQKRL-----------IINVPNFKVTMVSKD-GIKHLPPIKA 137 (160)
Q Consensus 74 ~vD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~e----l~~~~-----------~~s~~~i~i~iitk~-g~~~~~~~~~ 137 (160)
..||+|++..+++-|+|+|+..+.+.|++.|++. .+.+. -++.+|+++.+|++. +++.++++|+
T Consensus 155 h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~~~t~EE~ 234 (241)
T KOG0176|consen 155 HLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFHIYTPEEV 234 (241)
T ss_pred EeCCCCceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceEecCHHHH
Confidence 9999999999999999999999999999999982 22222 258999999999998 5999999999
Q ss_pred cCcc
Q psy12630 138 KNIP 141 (160)
Q Consensus 138 ~~~~ 141 (160)
+.+.
T Consensus 235 ~~~i 238 (241)
T KOG0176|consen 235 EQVI 238 (241)
T ss_pred HHHH
Confidence 8765
No 22
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=1.3e-28 Score=190.42 Aligned_cols=124 Identities=18% Similarity=0.275 Sum_probs=111.4
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|++||+.+|++.++++++.+++.|+++++++|+++.+|+++++.+|.+|| +.|||+|++||+|||+ .||+||++||+
T Consensus 67 ~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~ 145 (211)
T cd03749 67 IAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPS 145 (211)
T ss_pred EEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCC
Confidence 57899999999999999999999999999999999999999999999876 4799999999999996 68999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH------H----HHHHH--------h-hcCCCEEEEEEc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS------E----VQKRL--------I-INVPNFKVTMVS 125 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~------e----l~~~~--------~-~s~~~i~i~iit 125 (160)
|++.+++++|+|+|+..++++||++|++ + ++.+. . +++++|||++|+
T Consensus 146 G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 146 GNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred cCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9999999999999999999999999982 1 22221 2 567899999874
No 23
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=1.7e-28 Score=190.04 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=100.9
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|+.+|++.++++++.+++.|++++|++++++.++++|+++++.+++ ++|||+|++||||||+ +||+||++||+
T Consensus 72 ~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~ 150 (212)
T cd03751 72 IAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPS 150 (212)
T ss_pred EEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCC
Confidence 57899999999999999999999999999999999999999999999876 4799999999999996 78999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS 106 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~ 106 (160)
|++.+++++|+|+|+..++++||+.|++
T Consensus 151 Gs~~~~~~~a~G~g~~~a~~~Lek~~~~ 178 (212)
T cd03751 151 GVSYGYFGCAIGKGKQAAKTELEKLKFS 178 (212)
T ss_pred CCEEeeEEEEECCCCHHHHHHHHHhccC
Confidence 9999999999999999999999999998
No 24
>KOG0181|consensus
Probab=99.96 E-value=1.8e-29 Score=188.41 Aligned_cols=140 Identities=17% Similarity=0.268 Sum_probs=128.3
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|..||+.+|++.+++..|..++.|...|+++|++..+.+.++..||++|| +.|||||+++++|||+ ++|.||++||+
T Consensus 74 ~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPS 152 (233)
T KOG0181|consen 74 CVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPS 152 (233)
T ss_pred eEEecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCc
Confidence 56899999999999999999999999999999999999999999999999 4899999999999997 79999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCHHHH----H-HHh----------hcCCCEEEEEEcCCCeEEcCCccccCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRSEVQ----K-RLI----------INVPNFKVTMVSKDGIKHLPPIKAKNIP 141 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~el~----~-~~~----------~s~~~i~i~iitk~g~~~~~~~~~~~~~ 141 (160)
|+++.|+++|.|.+...+..+||++|.++|. . ..+ ++.+++||+++..++|+.+++.|++.+.
T Consensus 153 Gsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~~F~~lt~~eI~d~l 230 (233)
T KOG0181|consen 153 GSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENGFRRLTPAEIEDYL 230 (233)
T ss_pred cceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccccccCceEEEEecCCceeecCHHHHHHHH
Confidence 9999999999999999999999999998321 1 111 3789999999999999999999998776
No 25
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.96 E-value=1e-28 Score=193.08 Aligned_cols=140 Identities=11% Similarity=0.212 Sum_probs=122.0
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHhc-cCCCceEeEEEEEEcC-CCCCEEEEEcC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNG-YELSPRAAAYYTRKQLAEYLR-SRSPYNCNMLIAGHDP-EEGPQLFFIDY 77 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~-~~~~~~~la~~ls~~l~~~~r-~~rP~~vs~ii~G~D~-~~gp~Ly~vD~ 77 (160)
|+++|+.+|++.+++.++.+++.|++.++ .+++++.+|+++++.++.+++ ..|||+|++||||||+ +.||+||++||
T Consensus 62 ~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDp 141 (228)
T TIGR03691 62 FAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITF 141 (228)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECC
Confidence 57899999999999999999999999997 789999999988888876543 3689999999999985 47899999999
Q ss_pred CcceeeeC-EEEEecChHHHHHHHhccCCH--------HHHH----------HHhhcCCCEEEEEEcCCC----eEEcCC
Q psy12630 78 LASLIEIP-YITHGYPGIVTLSIMGEYHRS--------EVQK----------RLIINVPNFKVTMVSKDG----IKHLPP 134 (160)
Q Consensus 78 ~G~~~~~~-~~a~G~gs~~a~~~Le~~~~~--------el~~----------~~~~s~~~i~i~iitk~g----~~~~~~ 134 (160)
+|++.+++ ++|+|+|+..++++||++|++ +++. ++.++++++||++|++++ |+.+++
T Consensus 142 sG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~ 221 (228)
T TIGR03691 142 DGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITG 221 (228)
T ss_pred CCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCH
Confidence 99999976 899999999999999999997 1222 223678999999999754 999999
Q ss_pred ccccCc
Q psy12630 135 IKAKNI 140 (160)
Q Consensus 135 ~~~~~~ 140 (160)
+|++.+
T Consensus 222 ~ei~~~ 227 (228)
T TIGR03691 222 EALERL 227 (228)
T ss_pred HHHHhh
Confidence 998765
No 26
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=3.5e-28 Score=188.17 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=111.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|++||+.+|++.++++++.+++.|++++|++|+++.++++|+..++.++| +.|||+|++|++|||++.||+||++||+
T Consensus 72 ~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~ 151 (213)
T cd03752 72 CAVAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPS 151 (213)
T ss_pred EEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCC
Confidence 57999999999999999999999999999999999999999999998887 4799999999999997679999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCHH--------HHHH--------HhhcCCCEEEEEE
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRSE--------VQKR--------LIINVPNFKVTMV 124 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~e--------l~~~--------~~~s~~~i~i~ii 124 (160)
|++.+++++|+|+|+..++++||+.|+++ ++.+ +..++++++|+++
T Consensus 152 G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 152 GNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred CCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999999981 2222 2346788888764
No 27
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=7.8e-28 Score=186.63 Aligned_cols=106 Identities=19% Similarity=0.221 Sum_probs=100.2
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|++||+.+|++.+.+++|.+++.|+++++++|+++.+|++++++++.+++ ..|||+|++||||||+++||+||++||+
T Consensus 71 ~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~ 150 (215)
T cd03754 71 CVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPA 150 (215)
T ss_pred EEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCC
Confidence 57899999999999999999999999999999999999999999777765 4689999999999997679999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS 106 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~ 106 (160)
|++.+++++|+|+|+..++++||+.|++
T Consensus 151 Gs~~~~~~~a~G~gs~~~~~~Le~~~~~ 178 (215)
T cd03754 151 GYFAGYKATAAGVKEQEATNFLEKKLKK 178 (215)
T ss_pred ccEEeEEEEEECCCcHHHHHHHHHHhcc
Confidence 9999999999999999999999999876
No 28
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=1.1e-27 Score=185.04 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=112.5
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|++||+.+|++.+.+.++.+++.|+++++++++++.+++++++.++.++| ++|||+|++||||||+ .||+||++||+
T Consensus 70 ~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~ 148 (211)
T cd03756 70 AATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPS 148 (211)
T ss_pred EEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCC
Confidence 57899999999999999999999999999999999999999999998877 4799999999999996 79999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHHh-------hcCCCEEEEEEc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRLI-------INVPNFKVTMVS 125 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~~-------~s~~~i~i~iit 125 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+.+ +++++++|++|+
T Consensus 149 G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 149 GAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred CCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 9999999999999999999999999997 1 222211 478999999986
No 29
>KOG0179|consensus
Probab=99.95 E-value=3.9e-28 Score=182.88 Aligned_cols=130 Identities=20% Similarity=0.266 Sum_probs=120.2
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
++.+|+++|+..|.+.++.+++.|++.++..|++.++|++||.+||.+ | ++||++..||+|+|+++++.+|++||.|+
T Consensus 72 l~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~k-R-FFPYYv~~ilaGiDeeGKG~VySyDPvGs 149 (235)
T KOG0179|consen 72 LGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSK-R-FFPYYVFNILAGIDEEGKGAVYSYDPVGS 149 (235)
T ss_pred EecccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhc-c-cccceeeeeeecccccCceeEEeecCCcc
Confidence 478999999999999999999999999999999999999999999999 8 89999999999999989999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH---------------H------------HHHHHhhcCCCEEEEEEcCCCeEEc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS---------------E------------VQKRLIINVPNFKVTMVSKDGIKHL 132 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~---------------e------------l~~~~~~s~~~i~i~iitk~g~~~~ 132 (160)
+...-+.|.|+++.+++|+||+.... | .++|.+.+|++++|+|++|||++..
T Consensus 150 yer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e 228 (235)
T KOG0179|consen 150 YERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVE 228 (235)
T ss_pred eeeeeeecCCcchhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEE
Confidence 99999999999999999999986532 1 3667778999999999999997653
No 30
>KOG0182|consensus
Probab=99.95 E-value=3.5e-28 Score=183.46 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=128.9
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|+.+|++..++++|.++..++|+||++||++.||++++++.|.+|| .+||++|.+++.|+|++.||.||.+||.
T Consensus 78 ~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpA 157 (246)
T KOG0182|consen 78 CVITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPA 157 (246)
T ss_pred EEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCc
Confidence 57899999999999999999999999999999999999999999999999 5999999999999999899999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCHH----------HHHHHh-------hcCCCEEEEEEcCCC--eEEcCCccccC
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRSE----------VQKRLI-------INVPNFKVTMVSKDG--IKHLPPIKAKN 139 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~e----------l~~~~~-------~s~~~i~i~iitk~g--~~~~~~~~~~~ 139 (160)
|.+.++++++.|.....+.++||++||++ .+.... +..+.+||++++++. |+.|+.+|++.
T Consensus 158 Gyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~ 237 (246)
T KOG0182|consen 158 GYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEE 237 (246)
T ss_pred cccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHH
Confidence 99999999999999999999999999871 222111 246789999999986 99999999988
Q ss_pred cc
Q psy12630 140 IP 141 (160)
Q Consensus 140 ~~ 141 (160)
.+
T Consensus 238 hL 239 (246)
T KOG0182|consen 238 HL 239 (246)
T ss_pred HH
Confidence 87
No 31
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.95 E-value=1.9e-27 Score=183.52 Aligned_cols=123 Identities=19% Similarity=0.249 Sum_probs=111.4
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.+.+.++.++..|++++|++|+++.+|++++++++.++| +.|||+|++||||+|+++||+||++||.
T Consensus 69 ~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~ 148 (209)
T cd01911 69 CAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPS 148 (209)
T ss_pred EEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCC
Confidence 57899999999999999999999999999999999999999999988876 4789999999999997669999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCHH--------H--------HHHHhhcCCCEEEEEE
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRSE--------V--------QKRLIINVPNFKVTMV 124 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~e--------l--------~~~~~~s~~~i~i~ii 124 (160)
|++.+++++++|+|+..++++||+.|+++ + ..+++ ++++++|+++
T Consensus 149 G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 149 GTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred CCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 99999999999999999999999999981 1 23444 7888888764
No 32
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=5.3e-27 Score=181.55 Aligned_cols=123 Identities=19% Similarity=0.243 Sum_probs=109.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcc-------CCCceEeEEEEEEcCCCCCEEE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRS-------RSPYNCNMLIAGHDPEEGPQLF 73 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~-------~rP~~vs~ii~G~D~~~gp~Ly 73 (160)
|+++|+.+|++.+.+.++.+++.|++++|++|+++.++++|++++|.++|. .|||+|++||||||+ +||+||
T Consensus 69 ~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly 147 (213)
T cd03753 69 CAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLF 147 (213)
T ss_pred EEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEE
Confidence 578999999999999999999999999999999999999999999988652 489999999999996 799999
Q ss_pred EEcCCcceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHHh-------hcCCCEEEEEE
Q psy12630 74 FIDYLASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRLI-------INVPNFKVTMV 124 (160)
Q Consensus 74 ~vD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~~-------~s~~~i~i~ii 124 (160)
++||+|++.+++++++|+|++.++++||+.|++ + ++.+.+ +++++++|++|
T Consensus 148 ~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 148 HTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred EECCCCCeecccEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 999999999999999999999999999999997 2 222222 46788888764
No 33
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.95 E-value=6.3e-27 Score=176.04 Aligned_cols=124 Identities=30% Similarity=0.410 Sum_probs=111.2
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+.+.++.++..|+++++++++++.+++++++.+|.+++++|||++++|+||+|++++|+||.+||.|+
T Consensus 43 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~ 122 (182)
T cd01906 43 CAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGS 122 (182)
T ss_pred EEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCC
Confidence 57899999999999999999999999999999999999999999999955569999999999999767999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----HHH--------HHhhcCCCEEEEEE
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----VQK--------RLIINVPNFKVTMV 124 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~--------~~~~s~~~i~i~ii 124 (160)
+.+++++++|+|+..++++||+.|++ + ++. ++..+++.++|++|
T Consensus 123 ~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 123 YIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred EeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 99999999999999999999999998 1 222 22246788888864
No 34
>KOG0183|consensus
Probab=99.95 E-value=8.1e-28 Score=181.79 Aligned_cols=141 Identities=18% Similarity=0.250 Sum_probs=129.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|+.+|++.+++..|.+|+.|++..+.+++++.++.+|+.+-+.||| +.||||++++|+|+|+.+.|+||++||+
T Consensus 72 mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePs 151 (249)
T KOG0183|consen 72 MAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPS 151 (249)
T ss_pred EEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCC
Confidence 68999999999999999999999999999999999999999999999999 5899999999999998778999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCHH----------HHHHHhh-----cCCCEEEEEEcCCC-eEEcCCccccCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRSE----------VQKRLII-----NVPNFKVTMVSKDG-IKHLPPIKAKNIP 141 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~e----------l~~~~~~-----s~~~i~i~iitk~g-~~~~~~~~~~~~~ 141 (160)
|.+.+|++.|+|-++..+..+||+.|+++ |+.+.++ .+++++++++++++ ++.++.++|+.+.
T Consensus 152 G~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs~~~nie~aVm~~~~~~~~l~~~~I~~~v 230 (249)
T KOG0183|consen 152 GIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQSGGKNIEVAVMKRRKDLKMLESEEIDDIV 230 (249)
T ss_pred cchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhcCCCeeEEEEEecCCceeecCHHHHHHHH
Confidence 99999999999999999999999999872 3333332 57899999999987 9999999998876
No 35
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.94 E-value=7.2e-26 Score=171.32 Aligned_cols=124 Identities=26% Similarity=0.407 Sum_probs=110.3
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
++++|..+|++.+.++++.+++.|++.++.+++++.+++.+++.++..++ .+||+++++|+||||++++|+||.+||+
T Consensus 48 ~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~ 127 (190)
T PF00227_consen 48 IGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPS 127 (190)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETT
T ss_pred eeccccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccc
Confidence 47899999999999999999999999999999999888888887777665 4799999999999997667999999999
Q ss_pred cceeee-CEEEEecChHHHHHHHhccCCH----H------------HHHHHhhcCCCEEEEEE
Q psy12630 79 ASLIEI-PYITHGYPGIVTLSIMGEYHRS----E------------VQKRLIINVPNFKVTMV 124 (160)
Q Consensus 79 G~~~~~-~~~a~G~gs~~a~~~Le~~~~~----e------------l~~~~~~s~~~i~i~ii 124 (160)
|++.++ +++++|+|+..++++||+.|++ + ...++..++++++|++|
T Consensus 128 G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 128 GSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp SEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred cccccccccccchhcchhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999 6999999999999999999987 1 13344568999999986
No 36
>KOG0178|consensus
Probab=99.94 E-value=4.3e-26 Score=172.09 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=127.7
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|+.+|+..|++.+|..+|.|.+++|++||.+.|++.++++-+.+|| +.||||||+|.+|||+.-|.+||+-||+
T Consensus 74 C~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPS 153 (249)
T KOG0178|consen 74 CAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPS 153 (249)
T ss_pred EEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCC
Confidence 57899999999999999999999999999999999999999999999999 5799999999999998779999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCHH---------HHHHHh--------hcCCCEEEEEEcCCC----eEEcCCccc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRSE---------VQKRLI--------INVPNFKVTMVSKDG----IKHLPPIKA 137 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~e---------l~~~~~--------~s~~~i~i~iitk~g----~~~~~~~~~ 137 (160)
|++..|++.++|..+..++++|++.|+++ ++.++. ++.+.+|++.++++. ++++.+.|+
T Consensus 154 Gny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev 233 (249)
T KOG0178|consen 154 GNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEV 233 (249)
T ss_pred CCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHH
Confidence 99999999999999999999999999871 333332 367899999999874 678888888
Q ss_pred cCcc
Q psy12630 138 KNIP 141 (160)
Q Consensus 138 ~~~~ 141 (160)
..+.
T Consensus 234 ~kll 237 (249)
T KOG0178|consen 234 LKLL 237 (249)
T ss_pred HHHH
Confidence 7776
No 37
>KOG0175|consensus
Probab=99.91 E-value=2.8e-24 Score=166.30 Aligned_cols=137 Identities=19% Similarity=0.315 Sum_probs=127.0
Q ss_pred ceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcce
Q psy12630 2 AVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLASL 81 (160)
Q Consensus 2 ~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~~ 81 (160)
+++|-.+|||++-+.+..+|.+|++++++.|+|.+.+++|++++|+| |+ --+.+.++|+|||+ .||.||+||.-|+.
T Consensus 115 TmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~Y-kG-mGLsmGtMi~G~Dk-~GP~lyYVDseG~R 191 (285)
T KOG0175|consen 115 TMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQY-KG-MGLSMGTMIAGWDK-KGPGLYYVDSEGTR 191 (285)
T ss_pred cccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhc-cC-cchhheeeEeeccC-CCCceEEEcCCCCE
Confidence 57999999999999999999999999999999999999999999999 74 36889999999997 89999999999999
Q ss_pred eeeCEEEEecChHHHHHHHhccCCH--------HHHHHHh--------hcCCCEEEEEEcCCCeEEcCCccccCcc
Q psy12630 82 IEIPYITHGYPGIVTLSIMGEYHRS--------EVQKRLI--------INVPNFKVTMVSKDGIKHLPPIKAKNIP 141 (160)
Q Consensus 82 ~~~~~~a~G~gs~~a~~~Le~~~~~--------el~~~~~--------~s~~~i~i~iitk~g~~~~~~~~~~~~~ 141 (160)
...+..++||||.+|+++||+.||+ +|++|.| .||..+.+..|+.||+..+++.++.+|.
T Consensus 192 l~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L~ 267 (285)
T KOG0175|consen 192 LSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSELH 267 (285)
T ss_pred ecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHHHHH
Confidence 9999999999999999999999998 3666665 5899999999999999999999887773
No 38
>KOG0180|consensus
Probab=99.91 E-value=1.4e-23 Score=154.11 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=119.5
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
++.+|+..|.|.+.++++.+.++|+++.+++|.|+.+++++|+++|++ | +.||.+..++||+|+.++|+|+..|..|+
T Consensus 51 ~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lYek-R-fgpYf~~PvVAGl~~~~kPfIc~mD~IGc 128 (204)
T KOG0180|consen 51 LGLTGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLYEK-R-FGPYFTEPVVAGLDDDNKPFICGMDLIGC 128 (204)
T ss_pred EeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHHHh-h-cCCcccceeEeccCCCCCeeEeecccccC
Confidence 467999999999999999999999999999999999999999999999 8 88999999999999988999999999999
Q ss_pred eee-eCEEEEecChHHHHHHHhccCCH-----H-----------HHHHHhhcCCCEEEEEEcCCCeE
Q psy12630 81 LIE-IPYITHGYPGIVTLSIMGEYHRS-----E-----------VQKRLIINVPNFKVTMVSKDGIK 130 (160)
Q Consensus 81 ~~~-~~~~a~G~gs~~a~~~Le~~~~~-----e-----------l~~~~~~s~~~i~i~iitk~g~~ 130 (160)
... .+|+++|.++...++++|..|+| + ...|+++||++..+.+|+||.+.
T Consensus 129 ~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~ 195 (204)
T KOG0180|consen 129 IDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVT 195 (204)
T ss_pred cCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence 875 58999999999999999999998 1 25678899999999999999854
No 39
>KOG0185|consensus
Probab=99.90 E-value=1e-23 Score=161.36 Aligned_cols=139 Identities=21% Similarity=0.356 Sum_probs=123.1
Q ss_pred CceecChhHHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHhc-cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYK-MRNGYELSPRAAAYYTRKQLAEYLR-SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~-~~~~~~~~~~~la~~ls~~l~~~~r-~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
+++||+.+|+|.|.+.|......-+ +..|+.+.|+.++++|.++||++ | ++.|+|++++|||+|.++.|+|..+|..
T Consensus 84 lG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~r-RsKmnPlwntlvVgGv~~~g~~~lg~V~~~ 162 (256)
T KOG0185|consen 84 LGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYAR-RSKMNPLWNTLVVGGVDNTGEPFLGYVDLL 162 (256)
T ss_pred EecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHh-hhccCchhhheeEeeecCCCCeeEEEEeec
Confidence 4789999999999999998877644 66789999999999999999999 8 6999999999999998678999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH-------HHHH------------HHhhcCCCEEEEEEcCCCeEEcCCccccC
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS-------EVQK------------RLIINVPNFKVTMVSKDGIKHLPPIKAKN 139 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~-------el~~------------~~~~s~~~i~i~iitk~g~~~~~~~~~~~ 139 (160)
|..++.+.+|+|.|.++++++|++.|++ +.++ |++.+.++++|++||++|+++..|+.+++
T Consensus 163 G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~ 242 (256)
T KOG0185|consen 163 GVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKT 242 (256)
T ss_pred cccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeee
Confidence 9999999999999999999999999983 2222 22347899999999999999999988764
Q ss_pred c
Q psy12630 140 I 140 (160)
Q Consensus 140 ~ 140 (160)
-
T Consensus 243 ~ 243 (256)
T KOG0185|consen 243 N 243 (256)
T ss_pred c
Confidence 3
No 40
>KOG0863|consensus
Probab=99.90 E-value=4.7e-23 Score=157.47 Aligned_cols=140 Identities=18% Similarity=0.250 Sum_probs=125.3
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
++++|+.+|++.|+++++.++..+++.+++++++..+...|.+.++..|| +.|||||.++++|||+ .||+||.++|+
T Consensus 72 ~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Ps 150 (264)
T KOG0863|consen 72 ISIAGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPS 150 (264)
T ss_pred eEEeccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCC
Confidence 57899999999999999999999999999999999999999999999998 5899999999999997 89999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH-------HHHH------HHh------hcCCCEEEEEEcCCC-eEEcCCcccc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS-------EVQK------RLI------INVPNFKVTMVSKDG-IKHLPPIKAK 138 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~-------el~~------~~~------~s~~~i~i~iitk~g-~~~~~~~~~~ 138 (160)
|++++++..++|+.|+.+..+||++..+ ||.+ |.. +++.+++|.|+-||- |.+++...+.
T Consensus 151 g~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~ 230 (264)
T KOG0863|consen 151 GNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVA 230 (264)
T ss_pred ccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHH
Confidence 9999999999999999999999998765 3322 211 468899999999986 9999887776
Q ss_pred Ccc
Q psy12630 139 NIP 141 (160)
Q Consensus 139 ~~~ 141 (160)
.+.
T Consensus 231 k~~ 233 (264)
T KOG0863|consen 231 KYV 233 (264)
T ss_pred HHH
Confidence 553
No 41
>KOG0174|consensus
Probab=99.86 E-value=2.4e-21 Score=144.78 Aligned_cols=138 Identities=21% Similarity=0.341 Sum_probs=122.5
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+.||..+|.|.+++.++..+..|..++++++++...|+..+++.|++ | .-+...+|+||||++.|.++|.+-..|+
T Consensus 62 cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~-r--e~L~AgliVAGwD~~~gGqVY~iplGG~ 138 (224)
T KOG0174|consen 62 CCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNY-R--EMLSAGLIVAGWDEKEGGQVYSIPLGGS 138 (224)
T ss_pred EecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhC-H--HhhhcceEEeecccccCceEEEeecCce
Confidence 578999999999999999999999999999999999999999999999 6 3488999999999989999999988899
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----HHHHHHh------------hcCCCEEEEEEcCCCe--EEcCCccccCcc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----EVQKRLI------------INVPNFKVTMVSKDGI--KHLPPIKAKNIP 141 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----el~~~~~------------~s~~~i~i~iitk~g~--~~~~~~~~~~~~ 141 (160)
..+.++...||||.++++++|..||+ |.+.+++ -||..|.+.+|+++|+ +.+.+.++..+.
T Consensus 139 l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 139 LTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFA 217 (224)
T ss_pred EeecceeeccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccc
Confidence 99999999999999999999999998 4444333 3788999999999995 456666665554
No 42
>KOG0184|consensus
Probab=99.83 E-value=3.1e-20 Score=141.35 Aligned_cols=140 Identities=16% Similarity=0.223 Sum_probs=116.3
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|+.+|.+.+++.+|.++..|+-.++.++|.+.++..+++..|-+|+ ..||||++.++++||. +||+||++||+
T Consensus 76 ~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepS 154 (254)
T KOG0184|consen 76 MAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPS 154 (254)
T ss_pred EEEeccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCC
Confidence 68899999999999999999999999999999999999999999999988 4799999999999995 89999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH-----HH---HHHHhh------cCC--CEEEEEEcC--CCeEEcCCccccCc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS-----EV---QKRLII------NVP--NFKVTMVSK--DGIKHLPPIKAKNI 140 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~-----el---~~~~~~------s~~--~i~i~iitk--~g~~~~~~~~~~~~ 140 (160)
|...+++.+|+|.|.+.+...||+.--. |+ +-+.+. .-. .+|+..+.. +|.++.-|.|+.+.
T Consensus 155 G~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~e 234 (254)
T KOG0184|consen 155 GSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEE 234 (254)
T ss_pred CCccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHH
Confidence 9999999999999999999999987543 22 222221 122 366666653 56666666666554
Q ss_pred c
Q psy12630 141 P 141 (160)
Q Consensus 141 ~ 141 (160)
.
T Consensus 235 a 235 (254)
T KOG0184|consen 235 A 235 (254)
T ss_pred H
Confidence 4
No 43
>KOG0173|consensus
Probab=99.83 E-value=1.3e-19 Score=140.14 Aligned_cols=133 Identities=21% Similarity=0.387 Sum_probs=117.9
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
++.+|..+|...+.+.+..+..+|++..++++.+-..-++|.+.|+.| | .-.+..+|+||+|. .||+||.+-|.|+
T Consensus 80 ccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrY-q--G~IgA~LiiGGvD~-TGpHLy~i~phGS 155 (271)
T KOG0173|consen 80 CCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRY-Q--GHIGAALILGGVDP-TGPHLYSIHPHGS 155 (271)
T ss_pred EccCCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHh-c--CcccceeEEccccC-CCCceEEEcCCCC
Confidence 467899999999999999999999999999999999999999999999 6 36899999999997 8999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----HHHHHH----h--------hcCCCEEEEEEcCCCeEEcCCccc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----EVQKRL----I--------INVPNFKVTMVSKDGIKHLPPIKA 137 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----el~~~~----~--------~s~~~i~i~iitk~g~~~~~~~~~ 137 (160)
....+|++.|||+..++++||..|++ |.+..+ + -||.|+++++|++.+.+-+.+...
T Consensus 156 td~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~~~ 228 (271)
T KOG0173|consen 156 TDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLRNYSR 228 (271)
T ss_pred cCccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccccCCC
Confidence 99999999999999999999999998 333333 2 279999999999888766665543
No 44
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.82 E-value=2.6e-19 Score=130.42 Aligned_cols=104 Identities=25% Similarity=0.401 Sum_probs=100.0
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
++++|..+|++.+.++++.+++.|++.++.++++..+++.+++.++.+++ .||+++++|+||+|+ ++|+||.+||.|+
T Consensus 43 ~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~iiag~~~-~~~~l~~id~~g~ 120 (164)
T cd01901 43 WGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQ-GRPFGVNLIVAGVDE-GGGNLYYIDPSGP 120 (164)
T ss_pred EEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-CCCcceEEEEEEEcC-CCCEEEEECCCcC
Confidence 47899999999999999999999999999999999999999999999966 799999999999997 8999999999999
Q ss_pred eeee-CEEEEecChHHHHHHHhccCCH
Q psy12630 81 LIEI-PYITHGYPGIVTLSIMGEYHRS 106 (160)
Q Consensus 81 ~~~~-~~~a~G~gs~~a~~~Le~~~~~ 106 (160)
+.+. .++++|+++..+.++|++.|++
T Consensus 121 ~~~~~~~~~~G~~~~~~~~~l~~~~~~ 147 (164)
T cd01901 121 VIENPGAVATGSRSQRAKSLLEKLYKP 147 (164)
T ss_pred EeecCcEEEECCCCHHHHHHHHHHhcC
Confidence 9999 9999999999999999999986
No 45
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.74 E-value=2.4e-17 Score=123.81 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=88.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|+|.|.+.++.+++.|+. +. ++.++++++.+.. + +..+|+.+++|+ +|+ |+||++|+.|+
T Consensus 45 ~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~~a~l~~~l~~-~-~~~~~l~~~~lv--~d~---~~ly~id~~G~ 112 (172)
T PRK05456 45 AGFAGSTADAFTLFERFEAKLEEHQG--NL---LRAAVELAKDWRT-D-RYLRRLEAMLIV--ADK---EHSLIISGNGD 112 (172)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHccC--cc---HHHHHHHHHHHHh-c-cCCCccEEEEEE--EcC---CcEEEECCCCc
Confidence 57899999999999999999999982 22 5777766654421 2 224688899999 454 69999999999
Q ss_pred eeee--CEEEEecChHHHHHHHhccCC-H-----H--------HHHHHhhcCCCEEEEE
Q psy12630 81 LIEI--PYITHGYPGIVTLSIMGEYHR-S-----E--------VQKRLIINVPNFKVTM 123 (160)
Q Consensus 81 ~~~~--~~~a~G~gs~~a~~~Le~~~~-~-----e--------l~~~~~~s~~~i~i~i 123 (160)
..+. ++.++|||+.+++++||+.|+ + + ..+|++.++++|+|-.
T Consensus 113 ~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~meA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 113 VIEPEDGIIAIGSGGNYALAAARALLENTDLSAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred EeccCCCeEEEecCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 9766 799999999999999999999 5 2 3556667899988754
No 46
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.71 E-value=1.1e-16 Score=119.84 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=84.7
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCce-EeEEEEEEcCCCCCEEEEEcCCc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYN-CNMLIAGHDPEEGPQLFFIDYLA 79 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~-vs~ii~G~D~~~gp~Ly~vD~~G 79 (160)
|+++|..+|+|.|.++++.++++|+++.++ .++++++.++ .+ | .+|+. +.++++ |. ++||.+||.|
T Consensus 44 ~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l~-~~-~-~~~~l~a~~iv~--~~---~~ly~id~~G 110 (171)
T cd01913 44 AGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDWR-TD-R-YLRRLEAMLIVA--DK---EHTLLISGNG 110 (171)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHHH-hc-c-CcCceEEEEEEe--CC---CcEEEECCCC
Confidence 578999999999999999999999988774 5566654443 22 3 34665 555554 32 4899999999
Q ss_pred ceeeeC--EEEEecChHHHHHHHhccCCHH------H--------HHHHhhcCCCEEEE
Q psy12630 80 SLIEIP--YITHGYPGIVTLSIMGEYHRSE------V--------QKRLIINVPNFKVT 122 (160)
Q Consensus 80 ~~~~~~--~~a~G~gs~~a~~~Le~~~~~e------l--------~~~~~~s~~~i~i~ 122 (160)
+..+.+ +.++||||.+++++||..|+++ + .+|++.+|++|.|-
T Consensus 111 ~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms~~~la~~Av~~A~~rd~~tg~~i~~~ 169 (171)
T cd01913 111 DVIEPDDGIAAIGSGGNYALAAARALLDHTDLSAEEIARKALKIAADICIYTNHNITVE 169 (171)
T ss_pred CEeccCCCeEEEeCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhhCcccCCCEEEE
Confidence 999984 9999999999999999999982 2 33445688888764
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.68 E-value=3e-16 Score=117.55 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=83.6
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCC-ceEeEEEEEEcCCCCCEEEEEcCCc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSP-YNCNMLIAGHDPEEGPQLFFIDYLA 79 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP-~~vs~ii~G~D~~~gp~Ly~vD~~G 79 (160)
|+++|..+|+|.|.++++.++++|+++. .+.++++++++ ..+ + .+| +.+.+|++ |. ++||.+|+.|
T Consensus 44 ~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~-~~~-~-~~~~l~a~~iv~--~~---~~ly~i~~~G 110 (171)
T TIGR03692 44 AGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDW-RTD-R-YLRRLEAMLIVA--DK---ETSLLISGTG 110 (171)
T ss_pred EEecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHH-hhc-c-cccccEEEEEEE--cC---CCEEEEcCCC
Confidence 5789999999999999999999988743 47778777763 112 2 233 33666664 42 4899999999
Q ss_pred ceeee--CEEEEecChHHHHHHHhccCC-H-----HH--------HHHHhhcCCCEEEEE
Q psy12630 80 SLIEI--PYITHGYPGIVTLSIMGEYHR-S-----EV--------QKRLIINVPNFKVTM 123 (160)
Q Consensus 80 ~~~~~--~~~a~G~gs~~a~~~Le~~~~-~-----el--------~~~~~~s~~~i~i~i 123 (160)
+..+. ++.++||||.+++++||..|+ + ++ .+|++.+|++|.|-.
T Consensus 111 ~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~sa~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 111 DVIEPEDGIAAIGSGGNYALAAARALLRNTDLSAEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred cEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99996 699999999999999999995 3 23 344456888887643
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.033 Score=41.35 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=72.6
Q ss_pred ceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcce
Q psy12630 2 AVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLASL 81 (160)
Q Consensus 2 ~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~~ 81 (160)
+++|..+|+.+|.+.++.+++.|+ |.- .++.. -++.-.+.- |..|-+-.-+++ .|+ -.++-+--.|-.
T Consensus 49 GFAGstADaftLfe~fe~kle~~~---g~L--~raav-elaKdwr~D-k~lr~LEAmllV--ad~---~~il~isG~gdV 116 (178)
T COG5405 49 GFAGSTADAFTLFERFEAKLEQYQ---GDL--FRAAV-ELAKDWRTD-KYLRKLEAMLLV--ADK---THILIITGNGDV 116 (178)
T ss_pred EecccchhHHHHHHHHHHHHHHcc---CcH--HHHHH-HHHHhhhhh-hHHHHHhhheeE--eCC---CcEEEEecCcce
Confidence 678999999999999999987775 211 12222 222222211 113345565666 454 358888888887
Q ss_pred eee--CEEEEecChHHHHHHHhccCCH------HHHHHHhhcCCCEEEEEEcCCCeEE
Q psy12630 82 IEI--PYITHGYPGIVTLSIMGEYHRS------EVQKRLIINVPNFKVTMVSKDGIKH 131 (160)
Q Consensus 82 ~~~--~~~a~G~gs~~a~~~Le~~~~~------el~~~~~~s~~~i~i~iitk~g~~~ 131 (160)
.+. .+.++|||..++++-....++. |++++.+-. ..+||+.|.+.+.+
T Consensus 117 ~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~eIa~~sl~i--A~eiciyTN~ni~v 172 (178)
T COG5405 117 IEPEDDIIAIGSGGNYALSAARALMENTELSAREIAEKSLKI--AGDICIYTNHNIVV 172 (178)
T ss_pred ecCCCCeEEEcCCchHHHHHHHHHHhccCCCHHHHHHHHHhh--hheEEEecCCcEEE
Confidence 753 4999999999999988877764 344433322 23556666665543
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=8.7 Score=29.86 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=80.6
Q ss_pred ceecChhHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHH---HHHhc----c-CCCceEeEEEEEEcCCCCCEE
Q psy12630 2 AVTGDSGDTVQFAEFIAKNIQLYKMRN-GYELSPRAAAYYTRKQL---AEYLR----S-RSPYNCNMLIAGHDPEEGPQL 72 (160)
Q Consensus 2 ~~sG~~aD~~~l~~~l~~~~~~~~~~~-~~~~~~~~la~~ls~~l---~~~~r----~-~rP~~vs~ii~G~D~~~gp~L 72 (160)
..+|..+=.|.+...+.+..+.-+-.. -..++.-..+.++.... +.+-+ + .--|.|++|+||-=.-+-|.|
T Consensus 48 ~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~L 127 (255)
T COG3484 48 CTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRL 127 (255)
T ss_pred EecCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCcee
Confidence 457888888988888887765221111 12344555555555443 33312 1 245889999999754234899
Q ss_pred EEEcCCcceeee----CEEEEecChHHHHHHHhccCCH----H-HHHHHhh-----------cCCCEEEEEEcCCCeEE
Q psy12630 73 FFIDYLASLIEI----PYITHGYPGIVTLSIMGEYHRS----E-VQKRLII-----------NVPNFKVTMVSKDGIKH 131 (160)
Q Consensus 73 y~vD~~G~~~~~----~~~a~G~gs~~a~~~Le~~~~~----e-l~~~~~~-----------s~~~i~i~iitk~g~~~ 131 (160)
|.+=|-|++.+. .|.-+|..- +-.++|++.+.- + .++...+ -|--+++-+..+|.+++
T Consensus 128 y~IYpqGNFIqaT~etpf~QiGEtK-YGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v 205 (255)
T COG3484 128 YLIYPQGNFIQATPETPFLQIGETK-YGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSV 205 (255)
T ss_pred EEEccCCCeeecCCCCceeEccccc-cCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceee
Confidence 999999999863 577777654 557888887764 3 2333222 24456677777776544
No 50
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=47.90 E-value=41 Score=23.25 Aligned_cols=46 Identities=15% Similarity=0.049 Sum_probs=30.4
Q ss_pred ecChhHHHHHHHHHHHHHHHHHHhcC---------C-CCCHHHHHHHHHHHHHHHh
Q psy12630 4 TGDSGDTVQFAEFIAKNIQLYKMRNG---------Y-ELSPRAAAYYTRKQLAEYL 49 (160)
Q Consensus 4 sG~~aD~~~l~~~l~~~~~~~~~~~~---------~-~~~~~~la~~ls~~l~~~~ 49 (160)
.|+.-|+..+.+.++.-...+..++= . .++++.+|.++...+...+
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 57778888888888875443332211 1 2889999999999998875
No 51
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=42.15 E-value=79 Score=23.63 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhccCCCceE------------eEEEEEEcCCCCCEEEEEcCCcce
Q psy12630 35 RAAAYYTRKQLAEYLRSRSPYNC------------NMLIAGHDPEEGPQLFFIDYLASL 81 (160)
Q Consensus 35 ~~la~~ls~~l~~~~r~~rP~~v------------s~ii~G~D~~~gp~Ly~vD~~G~~ 81 (160)
.--++.++++|.++ .|+++ ..||.|+|. .+-.|...||-+..
T Consensus 95 ~~t~e~~~~LL~~y----GPLwv~~~~P~~~~~~H~~ViTGI~~-dg~~i~~~DP~~gP 148 (166)
T PF12385_consen 95 SYTAEGLANLLREY----GPLWVAWEAPGDSWVAHASVITGIDG-DGDSIHVHDPEQGP 148 (166)
T ss_pred ccCHHHHHHHHHHc----CCeEEEecCCCCcceeeEEEEEeecC-CCCeEEecCcccCC
Confidence 33455566677665 24433 467889996 67889999998754
No 52
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.65 E-value=19 Score=27.50 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.6
Q ss_pred EEEEEEcCCCCCEEEEEcCCcc
Q psy12630 59 MLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 59 ~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
.+|.|+|+ +.+|..||.|.
T Consensus 151 v~itgyDk---~n~yynDpyG~ 169 (195)
T COG4990 151 VLITGYDK---YNIYYNDPYGY 169 (195)
T ss_pred eEeecccc---cceEecccccc
Confidence 46779996 78999999964
No 53
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=37.53 E-value=72 Score=21.97 Aligned_cols=28 Identities=7% Similarity=0.129 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCHHHH
Q psy12630 10 TVQFAEFIAKNIQLYKMRNGY-ELSPRAA 37 (160)
Q Consensus 10 ~~~l~~~l~~~~~~~~~~~~~-~~~~~~l 37 (160)
|..+++.++.+++.|++.++. ++|.+.|
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 445778889999999999888 6665544
No 54
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=36.97 E-value=68 Score=19.95 Aligned_cols=30 Identities=13% Similarity=-0.034 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy12630 15 EFIAKNIQLYKMRNGYELSPRAAAYYTRKQ 44 (160)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~~~~~la~~ls~~ 44 (160)
+.+++-...+..+.|+.++.+.+|..+.--
T Consensus 4 ~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis 33 (78)
T PF04539_consen 4 RKIERARRELEQELGREPTDEEIAEELGIS 33 (78)
T ss_dssp HHHHHHHHHHHHHHSS--BHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHccc
Confidence 445555556677889999999999877433
No 55
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=34.30 E-value=51 Score=17.31 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=16.7
Q ss_pred EeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 57 CNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 57 vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
++..+-|.-+ +.|+||.+-.+|.
T Consensus 4 N~~~v~G~rP-g~pfl~~IpatG~ 26 (29)
T PF10632_consen 4 NSPRVFGARP-GSPFLFTIPATGE 26 (29)
T ss_pred ccCcEEcccC-CCcEEEEeeccCc
Confidence 3445567766 7899999988774
No 56
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=32.91 E-value=1e+02 Score=19.04 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=12.6
Q ss_pred HHHHhcCCCCCHHHHHHHHH
Q psy12630 23 LYKMRNGYELSPRAAAYYTR 42 (160)
Q Consensus 23 ~~~~~~~~~~~~~~la~~ls 42 (160)
.|.-.+|++|+++.++..+.
T Consensus 17 ~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 17 EYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHSS---HHHHHHHHT
T ss_pred HHHHHcCCCCCHHHHHHHhC
Confidence 35567899999999987663
No 57
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=30.51 E-value=49 Score=22.97 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=16.9
Q ss_pred HHHHHhhcCCCEEEEEEcCCCe
Q psy12630 108 VQKRLIINVPNFKVTMVSKDGI 129 (160)
Q Consensus 108 l~~~~~~s~~~i~i~iitk~g~ 129 (160)
+..++-+..+++.+..|.|||-
T Consensus 69 lr~~l~~~~~~f~~vLiGKDG~ 90 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGKDGG 90 (118)
T ss_pred HHHHhCCCCCceEEEEEeCCCc
Confidence 4444556788899999999983
No 58
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=30.16 E-value=62 Score=22.61 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=31.0
Q ss_pred ecChhHHHHHHHHHHHHHHH---HHHhc-----CCCCCHHHHHHHHHHHHHHH
Q psy12630 4 TGDSGDTVQFAEFIAKNIQL---YKMRN-----GYELSPRAAAYYTRKQLAEY 48 (160)
Q Consensus 4 sG~~aD~~~l~~~l~~~~~~---~~~~~-----~~~~~~~~la~~ls~~l~~~ 48 (160)
.|+.-|+..+.+.++..+.. |++-+ ...++.+.+|.++.+.+...
T Consensus 45 ~G~viDf~~lk~~~~~~~~~~lDH~~Ln~~~~~~~~pT~Enia~~i~~~l~~~ 97 (124)
T TIGR00039 45 TGMVMDFSDLKKIVKEVIDEPLDHKLLNDDVNYLENPTSENVAVYIFDNLKEY 97 (124)
T ss_pred ceEEEEHHHHHHHHHHHhccCCCCceeccCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 46667888887777766543 33322 34678999999988877665
No 59
>PRK04043 tolB translocation protein TolB; Provisional
Probab=28.85 E-value=1.7e+02 Score=24.86 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhccCC-CceEeEEEEEEcCCCC---CEEEEEcCCcce
Q psy12630 34 PRAAAYYTRKQLAEYLRSRS-PYNCNMLIAGHDPEEG---PQLFFIDYLASL 81 (160)
Q Consensus 34 ~~~la~~ls~~l~~~~r~~r-P~~vs~ii~G~D~~~g---p~Ly~vD~~G~~ 81 (160)
.+.+||.+++.+|+++-... .|....++.-- +.+ -+|+..|+.|..
T Consensus 131 ~r~~aH~~~d~i~~~l~~~~~~f~~r~~~v~~--~~~~~~~~l~~~d~dg~~ 180 (419)
T PRK04043 131 YPFLAHKSAIDINDYLKAPSIDWMKRKVVFSK--YTGPKKSNIVLADYTLTY 180 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCcCceeeEEEEEE--ccCCCcceEEEECCCCCc
Confidence 56799999999999974223 56666665433 133 489999999985
No 60
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=28.58 E-value=2e+02 Score=19.96 Aligned_cols=34 Identities=6% Similarity=0.102 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy12630 8 GDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQL 45 (160)
Q Consensus 8 aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l 45 (160)
.|--.+++.+|. |..+++..++++.+++.+...+
T Consensus 41 ~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 74 (109)
T PRK11508 41 PEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANKF 74 (109)
T ss_pred HHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 344456666665 4457889999999999876543
No 61
>KOG1559|consensus
Probab=28.17 E-value=1.6e+02 Score=23.83 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=31.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcC
Q psy12630 6 DSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDP 66 (160)
Q Consensus 6 ~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~ 66 (160)
...|+-..++++.........+....+..+ +.+++++|++ . |-++.--.-|+|+
T Consensus 282 HsedAiqvtqhaA~~lVsEARKs~nrp~Se---kvlsnLIYny-k---PtY~Gy~gsg~de 335 (340)
T KOG1559|consen 282 HSEDAIQVTQHAANYLVSEARKSLNRPESE---KVLSNLIYNY-K---PTYCGYAGSGYDE 335 (340)
T ss_pred CChhHHHHHHHHHHHHHHHHHhhcCCccHH---HHHHHHHhcc-C---cceeccccCccce
Confidence 345666666666555433322332333333 6778899988 4 8888655566664
No 62
>PHA02754 hypothetical protein; Provisional
Probab=28.16 E-value=85 Score=19.37 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=21.5
Q ss_pred ChHHHHHHHhccCCH---HHHHHHh-------------hcCCCEEEEEEcCCCeEE
Q psy12630 92 PGIVTLSIMGEYHRS---EVQKRLI-------------INVPNFKVTMVSKDGIKH 131 (160)
Q Consensus 92 gs~~a~~~Le~~~~~---el~~~~~-------------~s~~~i~i~iitk~g~~~ 131 (160)
++..-+.++++.|++ ++..++. .+|+.+ .+|+.|++++
T Consensus 4 AeEi~k~i~eK~Fke~MRelkD~LSe~GiYi~RIkai~~SGdkI--VVi~aD~I~i 57 (67)
T PHA02754 4 AEEIPKAIMEKDFKEAMRELKDILSEAGIYIDRIKAITTSGDKI--VVITADAIKI 57 (67)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhCceEEEEEEEEEecCCEE--EEEEcceEEE
Confidence 345556778887776 3443332 144443 5567777654
No 63
>KOG3652|consensus
Probab=26.96 E-value=1.3e+02 Score=27.78 Aligned_cols=63 Identities=14% Similarity=0.301 Sum_probs=40.8
Q ss_pred cChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc-c---CCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 5 GDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR-S---RSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 5 G~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r-~---~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|-.+-+-.|++..-. -+.|+++....+.++-..+++-- + + .+|..+++++ +||-||..|.-|-
T Consensus 194 GRAaAc~sLcRIfcS------KksgEeIl~a~LS~FY~ll~Q~L-q~kdyvchpmLasl~l------n~p~LFccdLkGI 260 (1215)
T KOG3652|consen 194 GRAAACASLCRIFCS------KKSGEEILNAQLSNFYALLFQCL-QEKDYVCHPMLASLFL------NGPNLFCCDLKGI 260 (1215)
T ss_pred hHHHHHHHHHHhhhc------ccCcccccHHHHHHHHHHHHHHH-hhcccccchhheeeee------cCCceeeecCCch
Confidence 344444444444322 35789999999998887766544 5 1 2455555444 6899999999884
No 64
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=26.35 E-value=69 Score=21.96 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=14.0
Q ss_pred CCCEEEEEcCCcceeee
Q psy12630 68 EGPQLFFIDYLASLIEI 84 (160)
Q Consensus 68 ~gp~Ly~vD~~G~~~~~ 84 (160)
++|+|+++||.+.....
T Consensus 36 d~PrL~Yvdp~~~~~KG 52 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLKG 52 (104)
T ss_dssp TTTEEEEEETTTTEEEE
T ss_pred cCCEEEEEECCCCeECc
Confidence 46999999999876654
No 65
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=24.87 E-value=2e+02 Score=18.65 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy12630 9 DTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQL 45 (160)
Q Consensus 9 D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l 45 (160)
|.+.|++.++.- |.+.++..++.+.+-. ++..+
T Consensus 36 ~~~~LA~~Iq~I---f~~SF~e~~~~e~C~~-iA~kl 68 (79)
T PF08958_consen 36 DPEELAKKIQSI---FEFSFGEWLPIEECEE-IAEKL 68 (79)
T ss_dssp -HHHHHHHHHHH---HHHHHSS---HHHHHH-HHHHH
T ss_pred CHHHHHHHHHHH---HHHHHcccCCHHHHHH-HHHHH
Confidence 566666666554 8888888888877754 44433
No 66
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=24.67 E-value=2.1e+02 Score=21.86 Aligned_cols=41 Identities=10% Similarity=-0.071 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Q psy12630 10 TVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR 50 (160)
Q Consensus 10 ~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r 50 (160)
++.+++++++.+....-..+....+-...|.||+.|+.-.|
T Consensus 125 ARtv~RRAER~~V~l~~~~~~~~~~l~YlNRLSdlLF~~AR 165 (184)
T COG2096 125 ARTVARRAERRLVALSREEEANLVVLKYLNRLSDLLFVLAR 165 (184)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 57788888888766555555566667788999999998766
No 67
>TIGR03112 6_pyr_pter_rel 6-pyruvoyl tetrahydropterin synthase-related domain. Members of this family are small proteins, or small domains of larger proteins, that occur in certain Firmicutes in the same regions as members of families TIGR03110 and TIGR03111. Members of TIGR03110 resemble exosortase, a proposed protein sorting transpeptidase (see TIGR02602). TIGR03111 represents a small clade among the group 2 glycosyltransferases. Members of the current protein family resemble eukaryotic known and prokaryotic predicted 6-pyruvoyl tetrahydropterin synthases.
Probab=24.58 E-value=2.4e+02 Score=19.42 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=29.2
Q ss_pred cChhHHHHHHHHHHHHHHHH--HHhcC------CCCCHHHHHHHHHHHHHHHhc
Q psy12630 5 GDSGDTVQFAEFIAKNIQLY--KMRNG------YELSPRAAAYYTRKQLAEYLR 50 (160)
Q Consensus 5 G~~aD~~~l~~~l~~~~~~~--~~~~~------~~~~~~~la~~ls~~l~~~~r 50 (160)
|+ -|+..|.+.++.-...+ ++-+. ..++.|.+|.++-+.+...+.
T Consensus 39 g~-vDf~~lk~~l~~v~~~~DH~~LNdv~~f~~~~PTaEniA~~i~~~l~~~l~ 91 (113)
T TIGR03112 39 KF-ILFNDVEKKVEKYLKPYQNKYLNDLEPFDKINPTLENIGDYFFDEIKKLLK 91 (113)
T ss_pred eE-EEHHHHHHHHHHHHHcCCCceeccCCccCCCCCCHHHHHHHHHHHHHHhhc
Confidence 44 36666666665544333 33332 357999999999999987754
No 68
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=22.22 E-value=1.1e+02 Score=20.11 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=27.3
Q ss_pred ecChhHHHHHHHHHHHHHHHHH--HhcC----CCCCHHHHHHHHHHHH
Q psy12630 4 TGDSGDTVQFAEFIAKNIQLYK--MRNG----YELSPRAAAYYTRKQL 45 (160)
Q Consensus 4 sG~~aD~~~l~~~l~~~~~~~~--~~~~----~~~~~~~la~~ls~~l 45 (160)
.|+.-|+..+.+.++.-...+. +-+. ..++.+.+|.++-+.+
T Consensus 43 ~g~v~Df~~lk~~~~~i~~~lDh~~Lne~~~~~~pT~E~ia~~i~~~l 90 (92)
T TIGR03367 43 AGMVMDFSDLKAIVKEVVDRLDHALLNDVPGLENPTAENLARWIYDRL 90 (92)
T ss_pred ccEEEEHHHHHHHHHHHHHhCCCcEeeCCCCCCCCCHHHHHHHHHHHH
Confidence 4677788888777766444333 2221 1578899998887765
No 69
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=21.70 E-value=1.4e+02 Score=17.41 Aligned_cols=32 Identities=16% Similarity=-0.063 Sum_probs=25.6
Q ss_pred EEEcCCcceeeeCEEEEecChHHHHHHHhccC
Q psy12630 73 FFIDYLASLIEIPYITHGYPGIVTLSIMGEYH 104 (160)
Q Consensus 73 y~vD~~G~~~~~~~~a~G~gs~~a~~~Le~~~ 104 (160)
|.++|.|.....--...|.....+...||+..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999988777778888888888887643
No 70
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=21.58 E-value=2.8e+02 Score=19.12 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy12630 8 GDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQL 45 (160)
Q Consensus 8 aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l 45 (160)
.|--.+++.+|. |..+++..++++.+++.+...+
T Consensus 40 ~~Hw~vI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 73 (108)
T TIGR03342 40 EAHWEVINFLRD----FYAEYNISPAVRMLVKAMGKKL 73 (108)
T ss_pred HHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 344456666665 4457889999999998877544
No 71
>KOG3361|consensus
Probab=21.39 E-value=94 Score=22.56 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=29.7
Q ss_pred EEEcCCcceeeeCEEEEecChHHHHHHHhccCCH
Q psy12630 73 FFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRS 106 (160)
Q Consensus 73 y~vD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~ 106 (160)
-.+|..|-+...+|-..|-||..+-+-+-..|-+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvk 104 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVK 104 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHc
Confidence 3688899999999999999999999888877743
No 72
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=20.72 E-value=2.6e+02 Score=20.90 Aligned_cols=41 Identities=7% Similarity=-0.123 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Q psy12630 10 TVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR 50 (160)
Q Consensus 10 ~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r 50 (160)
++.+++..++.+-...-..+....+-...|.||+.+|.-.|
T Consensus 117 aRtv~RRAER~~v~l~~~~~v~~~~l~ylNRLSD~lFvlAR 157 (171)
T TIGR00636 117 ARTVARRAERRVVALLKEEEINEVVLVYLNRLSDLLFVLAR 157 (171)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56677777776644322222344556778999999987766
No 73
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.38 E-value=75 Score=21.27 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=10.7
Q ss_pred CCCEEEEEcCCcc
Q psy12630 68 EGPQLFFIDYLAS 80 (160)
Q Consensus 68 ~gp~Ly~vD~~G~ 80 (160)
++|+|+++||.--
T Consensus 24 d~PrL~yvdp~~~ 36 (89)
T cd01262 24 NGPRLIYVDPVKK 36 (89)
T ss_pred cCceEEEEcCCcC
Confidence 4799999999843
Done!