Query psy12630
Match_columns 160
No_of_seqs 162 out of 1151
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 15:33:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h4p_a Proteasome subunit beta 100.0 2.9E-34 1E-38 221.9 10.8 140 1-142 44-200 (219)
2 1ryp_K 20S proteasome; multica 100.0 1.6E-32 5.6E-37 208.6 15.1 136 1-136 44-196 (198)
3 1j2q_H Proteasome beta subunit 100.0 6.8E-33 2.3E-37 211.4 12.8 138 1-141 43-197 (202)
4 1ryp_A 20S proteasome; multica 100.0 5.6E-33 1.9E-37 217.5 11.4 141 1-141 72-236 (243)
5 1yar_H Proteasome beta subunit 100.0 3.3E-32 1.1E-36 210.0 13.4 138 1-142 51-205 (217)
6 1iru_B 20S proteasome; cell cy 100.0 6.5E-32 2.2E-36 210.2 15.1 140 1-141 73-229 (233)
7 1iru_L 20S proteasome; cell cy 100.0 7.3E-32 2.5E-36 205.9 13.5 138 1-141 43-196 (204)
8 1iru_D 20S proteasome; cell cy 100.0 8.9E-32 3E-36 211.4 14.2 141 1-141 71-229 (248)
9 1iru_H 20S proteasome; cell cy 100.0 1.8E-31 6.3E-36 203.9 15.6 139 1-142 43-199 (205)
10 1yar_A Proteasome alpha subuni 100.0 2E-31 6.8E-36 207.5 15.7 139 1-140 76-232 (233)
11 1ryp_L 20S proteasome; multica 100.0 6.8E-32 2.3E-36 207.3 12.8 139 1-141 43-197 (212)
12 1ryp_D 20S proteasome; multica 100.0 2E-31 7E-36 208.4 15.3 141 1-141 71-231 (241)
13 3unf_H Proteasome subunit beta 100.0 2.3E-31 8E-36 207.7 15.3 137 1-141 43-195 (234)
14 1ryp_N 20S proteasome; multica 100.0 1.1E-31 3.8E-36 209.0 13.3 139 1-140 51-217 (233)
15 3h4p_A Proteasome subunit alph 100.0 3.8E-31 1.3E-35 209.8 15.3 140 1-141 80-237 (264)
16 3nzj_K Proteasome component PR 100.0 1.6E-31 5.5E-36 214.1 13.2 139 1-141 118-272 (287)
17 1ryp_F 20S proteasome; multica 100.0 2.2E-31 7.6E-36 207.3 13.5 140 1-141 71-233 (233)
18 1iru_N 20S proteasome; cell cy 100.0 1.9E-31 6.4E-36 205.8 12.1 139 1-141 51-209 (219)
19 1iru_F 20S proteasome; cell cy 100.0 6.5E-31 2.2E-35 208.3 15.3 140 1-141 72-233 (263)
20 3mi0_A Proteasome subunit alph 100.0 9.9E-31 3.4E-35 205.7 16.0 142 1-142 62-235 (248)
21 1iru_A 20S proteasome; cell cy 100.0 2.9E-31 9.8E-36 208.2 12.6 141 1-141 78-239 (246)
22 1iru_K 20S proteasome; cell cy 100.0 8.9E-31 3.1E-35 199.5 14.7 135 1-136 44-195 (201)
23 1ryp_C 20S proteasome; multica 100.0 8.9E-31 3.1E-35 205.0 14.6 141 1-141 74-238 (244)
24 1iru_G 20S proteasome; cell cy 100.0 7.8E-31 2.7E-35 206.8 13.8 141 1-141 75-236 (254)
25 1iru_M 20S proteasome; cell cy 100.0 2.4E-30 8.1E-35 198.7 15.7 130 1-132 52-206 (213)
26 1ryp_E 20S proteasome; multica 100.0 5.6E-31 1.9E-35 206.0 11.9 141 1-141 68-232 (242)
27 1iru_C 20S proteasome; cell cy 100.0 1.3E-30 4.6E-35 206.1 14.1 141 1-141 74-237 (261)
28 1g0u_M Proteasome component PR 100.0 8.8E-31 3E-35 207.8 13.0 139 1-140 84-250 (266)
29 1ryp_M 20S proteasome; multica 100.0 2.8E-30 9.5E-35 199.8 15.5 130 1-132 52-215 (222)
30 1ryp_I 20S proteasome; multica 100.0 5.1E-30 1.8E-34 198.4 15.1 135 1-139 43-194 (222)
31 1iru_E 20S proteasome; cell cy 100.0 3.1E-30 1.1E-34 201.7 11.9 140 1-141 76-238 (241)
32 1iru_I 20S proteasome; cell cy 100.0 1.7E-29 5.8E-34 197.0 15.7 136 1-140 43-194 (234)
33 1q5q_H Proteasome beta-type su 100.0 7.6E-30 2.6E-34 199.0 13.3 141 1-141 43-214 (235)
34 1j2p_A Alpha-ring, proteasome 100.0 6.9E-30 2.4E-34 200.4 13.1 139 1-141 76-233 (246)
35 1ryp_B 20S proteasome; multica 100.0 1.5E-29 5.2E-34 198.8 14.9 141 1-141 73-247 (250)
36 1ryp_G 20S proteasome; multica 100.0 1.1E-29 3.8E-34 199.1 14.0 138 1-139 72-233 (244)
37 3nzj_H Proteasome component PU 100.0 2.5E-29 8.6E-34 199.0 15.8 136 1-140 72-224 (261)
38 3unf_N Proteasome subunit beta 100.0 2.6E-29 8.7E-34 191.0 14.6 136 1-141 43-197 (199)
39 1ryp_J 20S proteasome; multica 100.0 4E-29 1.4E-33 190.7 14.6 129 1-131 50-196 (204)
40 1ryp_H 20S proteasome; multica 100.0 5.4E-29 1.9E-33 190.2 14.6 128 1-132 52-195 (205)
41 1q5q_A Proteasome alpha-type s 100.0 3.3E-29 1.1E-33 198.1 13.4 140 1-141 62-232 (259)
42 1iru_J 20S proteasome; cell cy 100.0 4.1E-29 1.4E-33 190.8 13.3 129 1-131 51-197 (205)
43 3nzj_F Proteasome component C1 100.0 3.7E-29 1.3E-33 200.5 13.0 136 1-137 76-235 (288)
44 1q5r_H Proteasome beta-type su 100.0 6E-29 2E-33 199.8 13.5 141 1-141 108-279 (294)
45 2jay_A Proteasome; hydrolase; 99.9 4.5E-28 1.5E-32 194.5 10.9 141 1-141 100-271 (291)
46 1g3k_A ATP-dependent protease 99.9 1.4E-21 4.8E-26 145.7 9.8 113 1-125 44-173 (174)
47 1m4y_A ATP-dependent protease 99.9 1.3E-21 4.5E-26 145.4 8.8 112 1-124 44-171 (171)
48 2z3b_A ATP-dependent protease 99.8 1.9E-20 6.7E-25 140.3 10.7 113 1-125 50-180 (180)
49 1b66_A 6-pyruvoyl tetrahydropt 46.0 21 0.00072 24.6 3.6 46 4-49 62-117 (140)
50 1ug8_A Poly(A)-specific ribonu 34.1 11 0.00037 24.3 0.5 48 3-50 2-50 (87)
51 3d7j_A Uncharacterized protein 32.8 51 0.0018 23.0 4.0 47 4-50 66-120 (152)
52 1y13_A PTPS, 6-pyruvoyl tetrah 31.4 63 0.0022 23.0 4.4 20 30-49 131-150 (181)
53 3lx3_A 6-pyruvoyl tetrahydrobi 30.9 61 0.0021 23.2 4.2 20 30-49 130-149 (180)
54 2oba_A Probable 6-pyruvoyl tet 28.9 89 0.0031 21.3 4.6 45 4-48 66-116 (138)
55 2g64_A Putative 6-pyruvoyl tet 26.5 68 0.0023 21.9 3.7 46 4-49 62-116 (140)
56 1sau_A Sulfite reductase, desu 25.6 1.5E+02 0.0052 19.8 5.4 33 7-43 47-79 (115)
57 4fqn_A Malcavernin; helical do 21.8 1.2E+02 0.0041 19.7 3.8 30 23-55 41-75 (98)
58 2dj6_A Hypothetical protein PH 21.0 1.5E+02 0.0052 19.2 4.5 44 5-49 44-92 (115)
59 1yx3_A Hypothetical protein DS 20.0 2.2E+02 0.0075 19.5 5.5 34 8-45 64-97 (132)
No 1
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.9e-34 Score=221.86 Aligned_cols=140 Identities=24% Similarity=0.393 Sum_probs=128.7
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|+.+|++.++++++.+++.|+++++++++++.+++++++++|++ | +|||+|++||||||+++||+||++||+|+
T Consensus 44 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~-~-~~P~~v~~lvaG~D~~~gp~Ly~idp~G~ 121 (219)
T 3h4p_a 44 MTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSS-R-MFPFLTQIIIGGYDLLEGAKLFSLDPLGG 121 (219)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHT-T-TTTCCCCCEEEEEETTTEEEEEEECSSCC
T ss_pred EEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh-c-CCCceEEEEEEEEeCCCCcEEEEECCCCc
Confidence 578999999999999999999999999999999999999999999998 6 78999999999999767899999999999
Q ss_pred eeeeC-EEEEecChHHHHHHHhccCCH----H----HHHH--------HhhcCCCEEEEEEcCCCeEEcCCccccCccc
Q psy12630 81 LIEIP-YITHGYPGIVTLSIMGEYHRS----E----VQKR--------LIINVPNFKVTMVSKDGIKHLPPIKAKNIPE 142 (160)
Q Consensus 81 ~~~~~-~~a~G~gs~~a~~~Le~~~~~----e----l~~~--------~~~s~~~i~i~iitk~g~~~~~~~~~~~~~~ 142 (160)
+.+++ ++++|+|+..++++||+.|++ + ++.+ +..++++++|++|+++|+++++++|++.+..
T Consensus 122 ~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~ 200 (219)
T 3h4p_a 122 MNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILD 200 (219)
T ss_dssp EEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHH
T ss_pred eEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHH
Confidence 99999 999999999999999999998 2 2222 2247899999999999999999999999973
No 2
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.6e-32 Score=208.55 Aligned_cols=136 Identities=45% Similarity=0.834 Sum_probs=123.3
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcC-CCCCEEEEEcCCc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDP-EEGPQLFFIDYLA 79 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~-~~gp~Ly~vD~~G 79 (160)
++++|..+|++.++++++.+++.|+++++++++++.+++++++.+|.++|.++||++++||||||+ ++||+||++||+|
T Consensus 44 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G 123 (198)
T 1ryp_K 44 MSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLG 123 (198)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTC
T ss_pred EEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCC
Confidence 578999999999999999999999999999999999999999999998663359999999999996 5799999999999
Q ss_pred ceeeeCEEEEecChHHHHHHHhccCCH----H----H--------HHHHhhcCCCEEEEEEcCCCeEEcCCcc
Q psy12630 80 SLIEIPYITHGYPGIVTLSIMGEYHRS----E----V--------QKRLIINVPNFKVTMVSKDGIKHLPPIK 136 (160)
Q Consensus 80 ~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l--------~~~~~~s~~~i~i~iitk~g~~~~~~~~ 136 (160)
++.+++++++|+|+..++++||+.|++ + + ..+++.++++++|++|+++|++++++++
T Consensus 124 ~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~ 196 (198)
T 1ryp_K 124 TKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQ 196 (198)
T ss_dssp CEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCS
T ss_pred CEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecccc
Confidence 999999999999999999999999997 1 1 2233457999999999999999998865
No 3
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=6.8e-33 Score=211.36 Aligned_cols=138 Identities=25% Similarity=0.395 Sum_probs=127.1
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.++++++.+++.|+++++++++++.+++++++++|.+ | +|||++++||||||+ +||+||++||+|+
T Consensus 43 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~-r-~rp~~~~~lvaG~D~-~gp~Ly~id~~G~ 119 (202)
T 1j2q_H 43 MTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSY-R-YFPYLVQLLIGGIDS-EGKSIYSIDPIGG 119 (202)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT-T-TSCCCEEEEEEEEET-TEEEEEEECTTCC
T ss_pred EEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh-C-CCCceEEEEEEEEeC-CCCEEEEECCCCC
Confidence 578999999999999999999999999999999999999999999997 6 789999999999997 7899999999999
Q ss_pred eeeeC-EEEEecChHHHHHHHhccCCH----H----HHH--------HHhhcCCCEEEEEEcCCCeEEcCCccccCcc
Q psy12630 81 LIEIP-YITHGYPGIVTLSIMGEYHRS----E----VQK--------RLIINVPNFKVTMVSKDGIKHLPPIKAKNIP 141 (160)
Q Consensus 81 ~~~~~-~~a~G~gs~~a~~~Le~~~~~----e----l~~--------~~~~s~~~i~i~iitk~g~~~~~~~~~~~~~ 141 (160)
+.+++ ++++|+|+..++++||+.|++ + ++. ++..++++++|++|+++|++++++++++.+.
T Consensus 120 ~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~ 197 (202)
T 1j2q_H 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQIL 197 (202)
T ss_dssp EEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHG
T ss_pred eeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHH
Confidence 99999 999999999999999999997 2 222 2234789999999999999999999998876
No 4
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=5.6e-33 Score=217.54 Aligned_cols=141 Identities=15% Similarity=0.157 Sum_probs=127.7
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|+.+|++.+++.++.+++.|+++++++|+++.+|++++++++.++| ++|||+|++||||||+++||+||++||+
T Consensus 72 ~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~ 151 (243)
T 1ryp_A 72 MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPA 151 (243)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTT
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCC
Confidence 57899999999999999999999999999999999999999999976665 3799999999999997679999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH-------H--------HHHHHh-------hcCCCEEEEEEcCCCeEEcCCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS-------E--------VQKRLI-------INVPNFKVTMVSKDGIKHLPPIK 136 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~-------e--------l~~~~~-------~s~~~i~i~iitk~g~~~~~~~~ 136 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+.+ +++++++|++|+++|++++++++
T Consensus 152 G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g~~~l~~~e 231 (243)
T 1ryp_A 152 GYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAEN 231 (243)
T ss_dssp SCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTEEEECCHHH
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCeEECCHHH
Confidence 9999999999999999999999999976 3 122221 47899999999999999999999
Q ss_pred ccCcc
Q psy12630 137 AKNIP 141 (160)
Q Consensus 137 ~~~~~ 141 (160)
++.+.
T Consensus 232 i~~~~ 236 (243)
T 1ryp_A 232 IEERL 236 (243)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98886
No 5
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.98 E-value=3.3e-32 Score=209.98 Aligned_cols=138 Identities=20% Similarity=0.361 Sum_probs=127.0
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.++++++.+++.|+++++++++++.+++++++.+|.+ | +|||++++|||||| +||+||++||+|+
T Consensus 51 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~-r-~rp~~v~~lvaG~D--~gp~Ly~idp~G~ 126 (217)
T 1yar_H 51 MTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQV-K-YMPYMVQLLVGGID--TAPHVFSIDAAGG 126 (217)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT-T-TSCCCEEEEEEEES--SSEEEEEECTTCC
T ss_pred EEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc-C-CCCceEEEEEEEEC--CCCEEEEECCCCC
Confidence 578999999999999999999999999999999999999999999998 6 79999999999999 6899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----HH--------HHHhhcCCCEEEEEEcC-CCeEEcCCccccCccc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----VQ--------KRLIINVPNFKVTMVSK-DGIKHLPPIKAKNIPE 142 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~--------~~~~~s~~~i~i~iitk-~g~~~~~~~~~~~~~~ 142 (160)
+.+++++++|+|+..++++||+.|++ + ++ .++..++++++|++|++ +|++++++++++.+..
T Consensus 127 ~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~ 205 (217)
T 1yar_H 127 SVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIR 205 (217)
T ss_dssp EEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHH
T ss_pred eEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHH
Confidence 99999999999999999999999997 1 22 23345789999999999 8999999999988863
No 6
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.98 E-value=6.5e-32 Score=210.21 Aligned_cols=140 Identities=16% Similarity=0.219 Sum_probs=128.2
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.++++++.+++.|+++++++++++.+++++++++|.++| .+|||+|++||||||+ +||+||++||+
T Consensus 73 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~ 151 (233)
T 1iru_B 73 LVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPS 151 (233)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTT
T ss_pred EEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCC
Confidence 57899999999999999999999999999999999999999999999876 3799999999999995 79999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHHh-------hcCCCEEEEEEcCCCeEEcCCccccCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRLI-------INVPNFKVTMVSKDGIKHLPPIKAKNIP 141 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~~-------~s~~~i~i~iitk~g~~~~~~~~~~~~~ 141 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+.+ .++++++|++|+++|++++++++++.+.
T Consensus 152 G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g~~~l~~~ei~~~~ 229 (233)
T 1iru_B 152 GAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYL 229 (233)
T ss_dssp SCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTEEEECCHHHHHHHH
T ss_pred CCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCEEECCHHHHHHHH
Confidence 9999999999999999999999999997 2 233222 3689999999999999999999998876
No 7
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.98 E-value=7.3e-32 Score=205.95 Aligned_cols=138 Identities=18% Similarity=0.291 Sum_probs=126.9
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+.+.++.+++.|+++++++++++.+++++++++|.+ | .+||+|++||||||+ +||+||++||+|+
T Consensus 43 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~-r-~~~~~v~~lvaG~D~-~gp~Ly~idp~G~ 119 (204)
T 1iru_L 43 GTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQY-K-GMGLSMGTMICGWDK-RGPGLYYVDSEGN 119 (204)
T ss_dssp EECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTT-T-TSCCCBEEEEEEECS-SSEEEEEEESSSC
T ss_pred EEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHh-C-CCCeeEEEEEEEEeC-CCCEEEEECCCCc
Confidence 478999999999999999999999999999999999999999999998 5 469999999999997 7999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----HH--------HHHhhcCCCEEEEEEcCCCeEEcCCccccCcc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----VQ--------KRLIINVPNFKVTMVSKDGIKHLPPIKAKNIP 141 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~--------~~~~~s~~~i~i~iitk~g~~~~~~~~~~~~~ 141 (160)
+.+++++++|+|+..++++||+.|++ + ++ .+++.++++++|++|+++|++.+++++++.+.
T Consensus 120 ~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~ 196 (204)
T 1iru_L 120 RISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLH 196 (204)
T ss_dssp EEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHH
T ss_pred EEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHH
Confidence 99999999999999999999999997 1 22 23345899999999999999999999998876
No 8
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.97 E-value=8.9e-32 Score=211.43 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=128.7
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.++++++.+++.|+++++++++++.+++++++++|.++| ++|||+|++||||||+++||+||++||+
T Consensus 71 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~ 150 (248)
T 1iru_D 71 MAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPS 150 (248)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTT
T ss_pred EEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCC
Confidence 57899999999999999999999999999999999999999999999977 3689999999999995589999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCHHH----------HHHHh-----hcCCCEEEEEEcCCC-eEEcCCccccCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRSEV----------QKRLI-----INVPNFKVTMVSKDG-IKHLPPIKAKNIP 141 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~el----------~~~~~-----~s~~~i~i~iitk~g-~~~~~~~~~~~~~ 141 (160)
|++.+++++++|+|+..++++||+.|++++ +.+.+ .++++++|++|+++| ++++++++++.+.
T Consensus 151 G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~~sg~~i~v~vi~~~g~~~~l~~~ei~~~~ 229 (248)
T 1iru_D 151 GTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYV 229 (248)
T ss_dssp SCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSCTTSTTCCEEEEESSSCEECCCHHHHHHHT
T ss_pred CcEEEeeEEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEECCCcEEECCHHHHHHHH
Confidence 999999999999999999999999998632 33332 368999999999998 9999999998886
No 9
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.97 E-value=1.8e-31 Score=203.85 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=126.5
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+++ ||++++||||||+++||+||++||+|+
T Consensus 43 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~---p~~~~~lvaG~D~~~gp~ly~~d~~G~ 119 (205)
T 1iru_H 43 CCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE---DLMAGIIIAGWDPQEGGQVYSVPMGGM 119 (205)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTT---TCCEEEEEEEEETTTEEEEEEECTTSC
T ss_pred EEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCc---CccEEEEEEEEeCCCCCEEEEECCCCc
Confidence 57899999999999999999999999999999999999999999999943 999999999999767899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----HH--------HHHhhcCCCEEEEEEcCCC--eEEcCCccccCccc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----VQ--------KRLIINVPNFKVTMVSKDG--IKHLPPIKAKNIPE 142 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~--------~~~~~s~~~i~i~iitk~g--~~~~~~~~~~~~~~ 142 (160)
+.+++++++|+|+..++++||+.|++ + ++ .++..++++++|++|+++| ++.+++++++.+..
T Consensus 120 ~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 199 (205)
T 1iru_H 120 MVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAV 199 (205)
T ss_dssp CEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCC
T ss_pred EEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHh
Confidence 99999999999999999999999997 1 22 2334579999999999998 46899999999884
No 10
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.97 E-value=2e-31 Score=207.46 Aligned_cols=139 Identities=16% Similarity=0.220 Sum_probs=126.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.+.++++.+++.|+++++++++++.+|+++++++|.++| ++|||+|++||||||+ +||+||++||+
T Consensus 76 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~ 154 (233)
T 1yar_A 76 AVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPA 154 (233)
T ss_dssp EEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTT
T ss_pred EEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCC
Confidence 57899999999999999999999999999999999999999999999876 4789999999999997 79999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHHh-------hcCCCEEEEEEcCCC-eEEcCCccccCc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRLI-------INVPNFKVTMVSKDG-IKHLPPIKAKNI 140 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~~-------~s~~~i~i~iitk~g-~~~~~~~~~~~~ 140 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+.+ .++++++|++|+++| ++++++++++.+
T Consensus 155 G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~~~~~~~~ei~~~ 232 (233)
T 1yar_A 155 GTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKF 232 (233)
T ss_dssp CCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSCCEECCHHHHHTT
T ss_pred CCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCEEECCHHHHHhh
Confidence 9999999999999999999999999987 2 232222 268999999999998 999999998775
No 11
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.97 E-value=6.8e-32 Score=207.31 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=127.3
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+++ .||++++||||||+++||+||++||+|+
T Consensus 43 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~--~p~~v~~lvaG~D~~~gp~Ly~idp~G~ 120 (212)
T 1ryp_L 43 GTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG--AGLSMGTMICGYTRKEGPTIYYVDSDGT 120 (212)
T ss_dssp EECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT--SCCCBEEEEEEEETTTEEEEEEEETTCC
T ss_pred EEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCC--CCceEEEEEEEEeCCCCCEEEEEcCCce
Confidence 57899999999999999999999999999999999999999999999954 5999999999999657999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----HH--------HHHhhcCCCEEEEEEcCCCeEEcCCccccCcc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----VQ--------KRLIINVPNFKVTMVSKDGIKHLPPIKAKNIP 141 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~--------~~~~~s~~~i~i~iitk~g~~~~~~~~~~~~~ 141 (160)
+.+++++++|+|+..++++||+.|++ + ++ .++..++++++|++|+++|++++++++++++.
T Consensus 121 ~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~~ 197 (212)
T 1ryp_L 121 RLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELF 197 (212)
T ss_dssp EEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHH
T ss_pred eEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHHHHH
Confidence 99999999999999999999999997 1 22 23345799999999999999999999998875
No 12
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.97 E-value=2e-31 Score=208.43 Aligned_cols=141 Identities=18% Similarity=0.231 Sum_probs=128.3
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCC-CCCEEEEEcC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPE-EGPQLFFIDY 77 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~-~gp~Ly~vD~ 77 (160)
|+++|..+|++.+++.++.+++.|+++++++|+++.+|+++++++|.++| ++|||+|++||||||++ +||+||++||
T Consensus 71 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp 150 (241)
T 1ryp_D 71 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEP 150 (241)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECT
T ss_pred EEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECC
Confidence 57899999999999999999999999999999999999999999999977 36899999999999975 7899999999
Q ss_pred CcceeeeCEEEEecChHHHHHHHhccC---CH----H----HHHHHh-----hcCCCEEEEEEcCCC-eEEcCCccccCc
Q psy12630 78 LASLIEIPYITHGYPGIVTLSIMGEYH---RS----E----VQKRLI-----INVPNFKVTMVSKDG-IKHLPPIKAKNI 140 (160)
Q Consensus 78 ~G~~~~~~~~a~G~gs~~a~~~Le~~~---~~----e----l~~~~~-----~s~~~i~i~iitk~g-~~~~~~~~~~~~ 140 (160)
+|++.+++++++|+|+..++++||+.| ++ + ++.+.+ .++++++|++|+++| ++++++++++.+
T Consensus 151 ~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~~~ 230 (241)
T 1ryp_D 151 SGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQY 230 (241)
T ss_dssp TSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHCSCSTTEEEEEEETTTEEEECCHHHHHHH
T ss_pred CCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcEEECCHHHHHHH
Confidence 999999999999999999999999999 66 2 232222 478999999999996 999999999887
Q ss_pred c
Q psy12630 141 P 141 (160)
Q Consensus 141 ~ 141 (160)
.
T Consensus 231 ~ 231 (241)
T 1ryp_D 231 V 231 (241)
T ss_dssp H
T ss_pred H
Confidence 6
No 13
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.97 E-value=2.3e-31 Score=207.65 Aligned_cols=137 Identities=18% Similarity=0.274 Sum_probs=125.1
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+++.++.+++.|++++|++++++.+++++++++|.+ ++||++++||||||+ +||+||++||+|+
T Consensus 43 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~---~~p~~v~llvaG~D~-~gp~Ly~idp~G~ 118 (234)
T 3unf_H 43 CCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY---QGHVGASLVVGGVDL-NGPQLYEVHPHGS 118 (234)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT---TTCSCEEEEEEEEET-TEEEEEEECTTSC
T ss_pred EEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhc---CCCccEEEEEEEEeC-CCCEEEEECCCCC
Confidence 578999999999999999999999999999999999999999999987 369999999999997 7999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----HH--------HHHhhcCCCEEEEEEcCCCeEEcCCccccCcc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----VQ--------KRLIINVPNFKVTMVSKDGIKHLPPIKAKNIP 141 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~--------~~~~~s~~~i~i~iitk~g~~~~~~~~~~~~~ 141 (160)
+.+++++++|+|+..++++||+.|++ + ++ .+++.++++++|++|++||++++++++++.-.
T Consensus 119 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~ 195 (234)
T 3unf_H 119 YSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEP 195 (234)
T ss_dssp EEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCC
T ss_pred EEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceeccccc
Confidence 99999999999999999999999997 2 22 23335799999999999999999999887654
No 14
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.97 E-value=1.1e-31 Score=208.97 Aligned_cols=139 Identities=14% Similarity=0.273 Sum_probs=127.2
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHhc-cCCCceEeEEEEEEcCCCCCEEEE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKM-----RNGYELSPRAAAYYTRKQLAEYLR-SRSPYNCNMLIAGHDPEEGPQLFF 74 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~-----~~~~~~~~~~la~~ls~~l~~~~r-~~rP~~vs~ii~G~D~~~gp~Ly~ 74 (160)
|+++|..+|++.|.++++.+++.|++ +++++++++.+|+++++++|.+ | ++|||+|++||||||+++||+||+
T Consensus 51 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~-r~~~~P~~v~~lvaG~D~~~gp~Ly~ 129 (233)
T 1ryp_N 51 VGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQR-RSKMNPLWNAIIVAGVQSNGDQFLRY 129 (233)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHH-HHTTCCCCEEEEEEEECTTSCEEEEE
T ss_pred EEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHHHHh-cCCCCCceEEEEEEEEcCCCCEEEEE
Confidence 57899999999999999999999999 8999999999999999999988 6 579999999999999756999999
Q ss_pred EcCCcceeeeCEEEEecChHHHHHHHhccCCH-----H--------H--------HHHHhhcCCCEEEEEEcCC-CeEEc
Q psy12630 75 IDYLASLIEIPYITHGYPGIVTLSIMGEYHRS-----E--------V--------QKRLIINVPNFKVTMVSKD-GIKHL 132 (160)
Q Consensus 75 vD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~-----e--------l--------~~~~~~s~~~i~i~iitk~-g~~~~ 132 (160)
+||+|++.+++++++|+|+..++++||+.|++ + + ..+++.++++++|++|+++ |++++
T Consensus 130 id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~ 209 (233)
T 1ryp_N 130 VNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK 209 (233)
T ss_dssp EETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred ECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEc
Confidence 99999999999999999999999999999976 3 1 1233357999999999999 99999
Q ss_pred CCccccCc
Q psy12630 133 PPIKAKNI 140 (160)
Q Consensus 133 ~~~~~~~~ 140 (160)
++++++++
T Consensus 210 ~~~~i~~~ 217 (233)
T 1ryp_N 210 KNLQVENM 217 (233)
T ss_dssp EEEECCSC
T ss_pred ChHhcccc
Confidence 99999888
No 15
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=3.8e-31 Score=209.77 Aligned_cols=140 Identities=22% Similarity=0.299 Sum_probs=127.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|+.+|++.++++++.+++.|+++++++++++.+|++|++++|.++| ++|||+|++||||||+ +||+||++||+
T Consensus 80 ~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~ 158 (264)
T 3h4p_A 80 AATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPS 158 (264)
T ss_dssp EEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTT
T ss_pred EEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCC
Confidence 57899999999999999999999999999999999999999999999876 4799999999999996 79999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHHh------hcCCCEEEEEEcCC--CeEEcCCccccCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRLI------INVPNFKVTMVSKD--GIKHLPPIKAKNIP 141 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~~------~s~~~i~i~iitk~--g~~~~~~~~~~~~~ 141 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+.+ +++++++|++|+++ +++++++++++.+.
T Consensus 159 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~~sg~~iev~vi~~~~~~~~~l~~~ei~~~~ 237 (264)
T 3h4p_A 159 GALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLI 237 (264)
T ss_dssp CCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSSCCTTSEEEEEEETTTTEEEECCTTTTGGGT
T ss_pred ceEEecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCCcEEECCHHHHHHHH
Confidence 9999999999999999999999999998 2 222222 47899999999986 49999999999887
No 16
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.97 E-value=1.6e-31 Score=214.12 Aligned_cols=139 Identities=14% Similarity=0.222 Sum_probs=127.7
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+ | .+||++++||||||+++||+||++||+|+
T Consensus 118 ~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~-r-~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~ 195 (287)
T 3nzj_K 118 GTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQY-K-GAGLSMGTMICGYTRKEGPTIYYVDSDGT 195 (287)
T ss_dssp EECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT-T-TSCCCEEEEEEEEETTTEEEEEEEETTCC
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh-c-CCCceEEEEEEEEcCCCCCEEEEECCCce
Confidence 578999999999999999999999999999999999999999999999 4 46999999999999668999999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----H--------HHHHhhcCCCEEEEEEcCCCeEEcCCccccCcc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----V--------QKRLIINVPNFKVTMVSKDGIKHLPPIKAKNIP 141 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l--------~~~~~~s~~~i~i~iitk~g~~~~~~~~~~~~~ 141 (160)
+.+++++++|+|+..++++||+.|++ + + ..|++.++++++|++|++||++++++++++++.
T Consensus 196 ~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~~~l 272 (287)
T 3nzj_K 196 RLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELF 272 (287)
T ss_dssp EEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHH
T ss_pred EEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHHHHH
Confidence 99999999999999999999999997 1 2 223345889999999999999999999998775
No 17
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.97 E-value=2.2e-31 Score=207.28 Aligned_cols=140 Identities=14% Similarity=0.184 Sum_probs=126.2
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.+++.++.+++.|+++++++|+++.++++++++++.++| ..|||+|++||||||+ +||+||++||+
T Consensus 71 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~ 149 (233)
T 1ryp_F 71 LSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPS 149 (233)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTT
T ss_pred EEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCC
Confidence 57899999999999999999999999999999999999999999998876 4789999999999997 78999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH--HH----------HHHH--------hhcCCCEEEEEEcCC-CeEEcCCccc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS--EV----------QKRL--------IINVPNFKVTMVSKD-GIKHLPPIKA 137 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~--el----------~~~~--------~~s~~~i~i~iitk~-g~~~~~~~~~ 137 (160)
|++.+++++++|+|+..++++||+.|++ ++ +.+. .+++++++|++|+++ |+++++++++
T Consensus 150 G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~~d~~~s~~~i~v~vi~~~~~~~~l~~~ei 229 (233)
T 1ryp_F 150 GNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAV 229 (233)
T ss_dssp SCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEEEEEEGGGG
T ss_pred CCeeeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEECCCCEEECCHHHH
Confidence 9999999999999999999999999875 22 2222 136889999999999 6999999999
Q ss_pred cCcc
Q psy12630 138 KNIP 141 (160)
Q Consensus 138 ~~~~ 141 (160)
+.+.
T Consensus 230 ~~~l 233 (233)
T 1ryp_F 230 AKYI 233 (233)
T ss_dssp GGGC
T ss_pred HhhC
Confidence 8763
No 18
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.97 E-value=1.9e-31 Score=205.79 Aligned_cols=139 Identities=19% Similarity=0.290 Sum_probs=126.0
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHHhc-cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKM-RNGYELSPRAAAYYTRKQLAEYLR-SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~-~~~~~~~~~~la~~ls~~l~~~~r-~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.+++.++.+++.|++ +++++++++.+++++++.+|.+ | ++|||++++||||+|+ +||+||++||+
T Consensus 51 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~-r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~ 128 (219)
T 1iru_N 51 LGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSR-RSKMNPLWNTMVIGGYAD-GESFLGYVDML 128 (219)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHH-HHTTCCCCEEEEEEEEET-TEEEEEEECSS
T ss_pred EEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh-cccCCCceEEEEEEEEEC-CCCEEEEECCC
Confidence 57899999999999999999999998 9999999999999999999987 5 5799999999999997 69999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH--H--------HH--------HHHhhcCCCEEEEEEcCCCeEEcCCccccCc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS--E--------VQ--------KRLIINVPNFKVTMVSKDGIKHLPPIKAKNI 140 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~--e--------l~--------~~~~~s~~~i~i~iitk~g~~~~~~~~~~~~ 140 (160)
|++.+++++++|+|+..++++||+.|++ + ++ .+++.++++++|++|+++|++++++++++..
T Consensus 129 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~ 208 (219)
T 1iru_N 129 GVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETN 208 (219)
T ss_dssp CCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCC
T ss_pred CCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccch
Confidence 9999999999999999999999999976 2 22 2333579999999999999999999988765
Q ss_pred c
Q psy12630 141 P 141 (160)
Q Consensus 141 ~ 141 (160)
-
T Consensus 209 ~ 209 (219)
T 1iru_N 209 W 209 (219)
T ss_dssp C
T ss_pred h
Confidence 4
No 19
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.97 E-value=6.5e-31 Score=208.25 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=127.5
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.|+++++.+++.|+++++++|+++.+++++++++|.++| +.|||+|++||||||+ +||+||++||+
T Consensus 72 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~ 150 (263)
T 1iru_F 72 ISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPS 150 (263)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSS
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCC
Confidence 57899999999999999999999999999999999999999999999876 4799999999999997 78999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH--H--------HHHHHh---------hcCCCEEEEEEcCC-CeEEcCCcccc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS--E--------VQKRLI---------INVPNFKVTMVSKD-GIKHLPPIKAK 138 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~--e--------l~~~~~---------~s~~~i~i~iitk~-g~~~~~~~~~~ 138 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+.+ +++++++|++|+++ +++++++++++
T Consensus 151 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~ 230 (263)
T 1iru_F 151 ANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVS 230 (263)
T ss_dssp SCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGH
T ss_pred CCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHH
Confidence 9999999999999999999999999985 2 222221 46789999999999 79999999998
Q ss_pred Ccc
Q psy12630 139 NIP 141 (160)
Q Consensus 139 ~~~ 141 (160)
.+.
T Consensus 231 ~~~ 233 (263)
T 1iru_F 231 PFL 233 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.97 E-value=9.9e-31 Score=205.69 Aligned_cols=142 Identities=11% Similarity=0.144 Sum_probs=124.5
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHH-HHHHHHhccCCCceEeEEEEEEcC---CCCCEEEEE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNG-YELSPRAAAYYTR-KQLAEYLRSRSPYNCNMLIAGHDP---EEGPQLFFI 75 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~-~~~~~~~la~~ls-~~l~~~~r~~rP~~vs~ii~G~D~---~~gp~Ly~v 75 (160)
|+++|+.+|++.|.+.++.+++.|+++++ ++++++.++++++ ++.+.++|++|||+|++||||||+ ++||+||++
T Consensus 62 ~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~ 141 (248)
T 3mi0_A 62 FAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRI 141 (248)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEE
T ss_pred EEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEE
Confidence 57899999999999999999999999999 9999999999999 555556556899999999999997 479999999
Q ss_pred cCCcceee-eCEEEEecChHHHHHHHhccCCH----H----HHHHH--------------hhcCCCEEEEEEcCCC----
Q psy12630 76 DYLASLIE-IPYITHGYPGIVTLSIMGEYHRS----E----VQKRL--------------IINVPNFKVTMVSKDG---- 128 (160)
Q Consensus 76 D~~G~~~~-~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~--------------~~s~~~i~i~iitk~g---- 128 (160)
||+|++.+ ++++|+|+|+..++++||+.|++ + ++.+. .+++++++|++|+++|
T Consensus 142 Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~ 221 (248)
T 3mi0_A 142 TYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRA 221 (248)
T ss_dssp CTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCC
T ss_pred CCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCccc
Confidence 99999995 99999999999999999999998 1 22211 2467899999999997
Q ss_pred eEEcCCccccCccc
Q psy12630 129 IKHLPPIKAKNIPE 142 (160)
Q Consensus 129 ~~~~~~~~~~~~~~ 142 (160)
++++++++++.+..
T Consensus 222 f~~l~~~ei~~~l~ 235 (248)
T 3mi0_A 222 FRRITGSALQALLV 235 (248)
T ss_dssp EEECCHHHHHHTC-
T ss_pred EEECCHHHHHHHHH
Confidence 99999999999873
No 21
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.97 E-value=2.9e-31 Score=208.16 Aligned_cols=141 Identities=16% Similarity=0.241 Sum_probs=127.0
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.++++++.+++.|+++++++++++.+|++++++++.++| .+|||+|++||||||+++||+||++||+
T Consensus 78 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~ 157 (246)
T 1iru_A 78 CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPA 157 (246)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTT
T ss_pred EEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCC
Confidence 57899999999999999999999999999999999999999999877765 3799999999999997679999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH--H--------HHHHHh-------hcCCCEEEEEEcCCC--eEEcCCccccC
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS--E--------VQKRLI-------INVPNFKVTMVSKDG--IKHLPPIKAKN 139 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~--e--------l~~~~~-------~s~~~i~i~iitk~g--~~~~~~~~~~~ 139 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+.+ .++++++|++|+++| ++++++++++.
T Consensus 158 G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~ 237 (246)
T 1iru_A 158 GYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237 (246)
T ss_dssp SCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHH
T ss_pred eeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHH
Confidence 9999999999999999999999999986 2 222222 478999999999999 69999999988
Q ss_pred cc
Q psy12630 140 IP 141 (160)
Q Consensus 140 ~~ 141 (160)
+.
T Consensus 238 ~~ 239 (246)
T 1iru_A 238 HL 239 (246)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 22
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.97 E-value=8.9e-31 Score=199.47 Aligned_cols=135 Identities=53% Similarity=0.965 Sum_probs=119.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQL-AEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLA 79 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l-~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G 79 (160)
++++|..+|++.++++++.+++.|+++++++++++.+++++++.+ |.. |.++||++++||||||+++||+||++||+|
T Consensus 44 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~-~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G 122 (201)
T 1iru_K 44 LLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCL-RSRTPYHVNLLLAGYDEHEGPALYYMDYLA 122 (201)
T ss_dssp EEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-TSSSCCCEEEEEEEEETTTEEEEEEECTTC
T ss_pred EEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hcCCCccEEEEEEEEeCCCCeEEEEECCCc
Confidence 578999999999999999999999999999999999999999877 443 534799999999999976789999999999
Q ss_pred ceeeeCEEEEecChHHHHHHHhccCCH----H----HH--------HHHhhcCCCEEEEEEcCCCeEEcCCcc
Q psy12630 80 SLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQ--------KRLIINVPNFKVTMVSKDGIKHLPPIK 136 (160)
Q Consensus 80 ~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~--------~~~~~s~~~i~i~iitk~g~~~~~~~~ 136 (160)
++.+++++++|+|+..++++||+.|++ + ++ .|++.++++++|++|+++|++.++++.
T Consensus 123 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~ 195 (201)
T 1iru_K 123 ALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNIS 195 (201)
T ss_dssp CEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCBC
T ss_pred CeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEeeccc
Confidence 999999999999999999999999997 1 22 233357899999999999999887653
No 23
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.97 E-value=8.9e-31 Score=205.04 Aligned_cols=141 Identities=14% Similarity=0.180 Sum_probs=127.4
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.++++++.+++.|+++++++++++.+++++++++|.++| ++|||+|++||||||+++||+||++||+
T Consensus 74 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~ 153 (244)
T 1ryp_C 74 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPS 153 (244)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTT
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCC
Confidence 57899999999999999999999999999999999999999999998876 4799999999999995489999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHHh--------hcCCCEEEEEEc--CCC----eEEcCCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRLI--------INVPNFKVTMVS--KDG----IKHLPPIK 136 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~~--------~s~~~i~i~iit--k~g----~~~~~~~~ 136 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+.+ +++++++|++|+ ++| ++.+++++
T Consensus 154 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~e 233 (244)
T 1ryp_C 154 GNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQE 233 (244)
T ss_dssp CCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHH
T ss_pred ccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHH
Confidence 9999999999999999999999999997 2 222221 358899999999 986 78999999
Q ss_pred ccCcc
Q psy12630 137 AKNIP 141 (160)
Q Consensus 137 ~~~~~ 141 (160)
++.+.
T Consensus 234 i~~~~ 238 (244)
T 1ryp_C 234 IKDIL 238 (244)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 24
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.97 E-value=7.8e-31 Score=206.77 Aligned_cols=141 Identities=16% Similarity=0.227 Sum_probs=126.9
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.++++++.+++.|+++++++|+++.+++++++++|.+++ ++|||+|++||||||+++||+||++||+
T Consensus 75 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~ 154 (254)
T 1iru_G 75 MAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPS 154 (254)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTT
T ss_pred EEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCC
Confidence 57899999999999999999999999999999999999999999999965 3799999999999995589999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHHh--------hcCCCEEEEEEcCC--C-eEEcCCccccC
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRLI--------INVPNFKVTMVSKD--G-IKHLPPIKAKN 139 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~~--------~s~~~i~i~iitk~--g-~~~~~~~~~~~ 139 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+.+ .++++++|++|+++ | +++++++++++
T Consensus 155 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~ 234 (254)
T 1iru_G 155 GVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREE 234 (254)
T ss_dssp CCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHH
T ss_pred CCEEeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHH
Confidence 9999999999999999999999999987 2 222222 15677999999987 6 99999999988
Q ss_pred cc
Q psy12630 140 IP 141 (160)
Q Consensus 140 ~~ 141 (160)
+.
T Consensus 235 ~~ 236 (254)
T 1iru_G 235 AE 236 (254)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 25
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.97 E-value=2.4e-30 Score=198.73 Aligned_cols=130 Identities=19% Similarity=0.327 Sum_probs=117.2
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+++.++.+++.|+++++++++++.+|+++++++|.+ | +|||++++||||||++++|+||++||+|+
T Consensus 52 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~-r-~~P~~v~~lvaG~D~~g~p~Ly~id~~G~ 129 (213)
T 1iru_M 52 IGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSR-R-FFPYYVYNIIGGLDEEGKGAVYSFDPVGS 129 (213)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT-T-TSCCCEEEEEEEECTTSCEEEEEECTTSC
T ss_pred EEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhh-C-CCCceEEEEEEEEcCCCCEEEEEECCCCC
Confidence 578999999999999999999999999999999999999999999877 6 79999999999999756799999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhcc---------CCH----H----H--------HHHHhhcCCCEEEEEEcCCCeEEc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEY---------HRS----E----V--------QKRLIINVPNFKVTMVSKDGIKHL 132 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~---------~~~----e----l--------~~~~~~s~~~i~i~iitk~g~~~~ 132 (160)
+.+++++++|+|+..++++||+. |++ + + ..+++.++++++|++|+++|++..
T Consensus 130 ~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 206 (213)
T 1iru_M 130 YQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 206 (213)
T ss_dssp EEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred EEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEE
Confidence 99999999999999999999999 765 2 2 223345799999999999997653
No 26
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.97 E-value=5.6e-31 Score=205.98 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=127.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--c------CCCceEeEEEEEEcCCCCCEE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--S------RSPYNCNMLIAGHDPEEGPQL 72 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~------~rP~~vs~ii~G~D~~~gp~L 72 (160)
|+++|..+|++.++++++.+++.|+++++++++++.+++++++++|.+++ + .|||+|++||||||+++||+|
T Consensus 68 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~L 147 (242)
T 1ryp_E 68 CAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQL 147 (242)
T ss_dssp EEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEE
T ss_pred EEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEE
Confidence 57899999999999999999999999999999999999999999998765 3 789999999999996589999
Q ss_pred EEEcCCcceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHHh-------hcCCCEEEEEEcCCC-eEEcCCcc
Q psy12630 73 FFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRLI-------INVPNFKVTMVSKDG-IKHLPPIK 136 (160)
Q Consensus 73 y~vD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~~-------~s~~~i~i~iitk~g-~~~~~~~~ 136 (160)
|++||+|++.+++++++|+|+..++++||+.|++ + ++.+.+ .++++++|++|+++| ++++++++
T Consensus 148 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~e 227 (242)
T 1ryp_E 148 FHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEK 227 (242)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTEEEECCHHH
T ss_pred EEECCCCCEeccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCeEECCHHH
Confidence 9999999999999999999999999999999998 2 222222 478999999999998 79999999
Q ss_pred ccCcc
Q psy12630 137 AKNIP 141 (160)
Q Consensus 137 ~~~~~ 141 (160)
++.+.
T Consensus 228 i~~~~ 232 (242)
T 1ryp_E 228 TAELI 232 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 27
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.97 E-value=1.3e-30 Score=206.13 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=128.1
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.++++++.+++.|+++++++++++.+|+++++++|.+++ .+|||+|++||||||+++||+||++||+
T Consensus 74 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~ 153 (261)
T 1iru_C 74 CSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPS 153 (261)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETT
T ss_pred EEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCC
Confidence 57899999999999999999999999999999999999999999999975 4799999999999996578999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH-H--------HHHHH--------hhcCCCEEEEEEcCCC----eEEcCCccc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS-E--------VQKRL--------IINVPNFKVTMVSKDG----IKHLPPIKA 137 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~-e--------l~~~~--------~~s~~~i~i~iitk~g----~~~~~~~~~ 137 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+. ..++++++|++|+++| +++++++++
T Consensus 154 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei 233 (261)
T 1iru_C 154 GNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEV 233 (261)
T ss_dssp TEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHH
T ss_pred ceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHH
Confidence 9999999999999999999999999987 3 22222 2468999999999997 799999999
Q ss_pred cCcc
Q psy12630 138 KNIP 141 (160)
Q Consensus 138 ~~~~ 141 (160)
+.+.
T Consensus 234 ~~~l 237 (261)
T 1iru_C 234 EQLI 237 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8886
No 28
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.97 E-value=8.8e-31 Score=207.79 Aligned_cols=139 Identities=14% Similarity=0.272 Sum_probs=127.0
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHhc-cCCCceEeEEEEEEcCCCCCEEEE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKM-----RNGYELSPRAAAYYTRKQLAEYLR-SRSPYNCNMLIAGHDPEEGPQLFF 74 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~-----~~~~~~~~~~la~~ls~~l~~~~r-~~rP~~vs~ii~G~D~~~gp~Ly~ 74 (160)
|+++|..+|++.|++.++.+++.|++ +++++++++.+++++++++|.+ | ++|||+|++||||||+++||+||+
T Consensus 84 ~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~-r~~~~P~~v~~lvaG~D~~~gp~Ly~ 162 (266)
T 1g0u_M 84 VGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQR-RSKMNPLWNAIIVAGVQSNGDQFLRY 162 (266)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHH-HHTTCCCCEEEEEEEECTTSCEEEEE
T ss_pred EEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHh-ccCCCCceEEEEEEEEcCCCCEEEEE
Confidence 57899999999999999999999998 8999999999999999999988 5 579999999999999756999999
Q ss_pred EcCCcceeeeCEEEEecChHHHHHHHhccCCH-----H--------HH--------HHHhhcCCCEEEEEEcCC-CeEEc
Q psy12630 75 IDYLASLIEIPYITHGYPGIVTLSIMGEYHRS-----E--------VQ--------KRLIINVPNFKVTMVSKD-GIKHL 132 (160)
Q Consensus 75 vD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~-----e--------l~--------~~~~~s~~~i~i~iitk~-g~~~~ 132 (160)
+||+|++.+++++++|+|+..++++||+.|++ + ++ .+++.++++++|++|+++ |++++
T Consensus 163 idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~ 242 (266)
T 1g0u_M 163 VNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK 242 (266)
T ss_dssp EETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred ECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEc
Confidence 99999999999999999999999999999976 3 11 233357999999999999 99999
Q ss_pred CCccccCc
Q psy12630 133 PPIKAKNI 140 (160)
Q Consensus 133 ~~~~~~~~ 140 (160)
++++++++
T Consensus 243 ~~~ei~~~ 250 (266)
T 1g0u_M 243 KNLQVENM 250 (266)
T ss_dssp EEEECCCC
T ss_pred CHHHhhhh
Confidence 99999888
No 29
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.97 E-value=2.8e-30 Score=199.83 Aligned_cols=130 Identities=20% Similarity=0.281 Sum_probs=117.4
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNG-YELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLA 79 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~-~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G 79 (160)
|+++|+.+|++.+++.++.+++.|+++++ ++++++.+|+++++++|.+ | ++||++++||||||++++|+||++||+|
T Consensus 52 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~-r-~~P~~v~~ivaG~D~~g~p~Ly~~dp~G 129 (222)
T 1ryp_M 52 MSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGK-R-FFPYYVHTIIAGLDEDGKGAVYSFDPVG 129 (222)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTT-T-TSCCCEEEEEEEECTTSCEEEEEECTTS
T ss_pred EEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhc-C-CCCceEEEEEEEEcCCCCeEEEEECCCc
Confidence 57899999999999999999999999999 9999999999999999987 6 7899999999999975679999999999
Q ss_pred ceeeeCEEEEecChHHHHHHHhcc-----------------CCH----H----H--------HHHHhhcCCCEEEEEEcC
Q psy12630 80 SLIEIPYITHGYPGIVTLSIMGEY-----------------HRS----E----V--------QKRLIINVPNFKVTMVSK 126 (160)
Q Consensus 80 ~~~~~~~~a~G~gs~~a~~~Le~~-----------------~~~----e----l--------~~~~~~s~~~i~i~iitk 126 (160)
++.+++++++|+|+.+++++||+. |++ + + ..+++.++++++|++|++
T Consensus 130 ~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~ 209 (222)
T 1ryp_M 130 SYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTK 209 (222)
T ss_dssp CEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEET
T ss_pred CEEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcC
Confidence 999999999999999999999998 665 2 2 234446799999999999
Q ss_pred CCeEEc
Q psy12630 127 DGIKHL 132 (160)
Q Consensus 127 ~g~~~~ 132 (160)
+|+++.
T Consensus 210 ~g~~~~ 215 (222)
T 1ryp_M 210 DGVRKE 215 (222)
T ss_dssp TEEEEE
T ss_pred CCeEEE
Confidence 997653
No 30
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.97 E-value=5.1e-30 Score=198.40 Aligned_cols=135 Identities=21% Similarity=0.275 Sum_probs=121.5
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.++++++.+++.|+++++++++++.+++++++.+|.+ .+||++++||||+|+ +||+||++||+|+
T Consensus 43 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~---~~p~~v~~lvaG~D~-~gp~Ly~idp~G~ 118 (222)
T 1ryp_I 43 CAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY---QGHIGAYLIVAGVDP-TGSHLFSIHAHGS 118 (222)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT---TTCSCEEEEEEEEET-TEEEEEEECTTSC
T ss_pred EEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---CCCCCeeEEEEEEeC-CCCEEEEECCCCC
Confidence 578999999999999999999999999999999999999999999987 379999999999997 7899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----HHH--------HHhhcCCCEEEEEEcCCC-eEEcCCccccC
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----VQK--------RLIINVPNFKVTMVSKDG-IKHLPPIKAKN 139 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~--------~~~~s~~~i~i~iitk~g-~~~~~~~~~~~ 139 (160)
+.+++++++|+|+..++++||+.|++ + ++. ++..++++++|++|+++| ++++++.++..
T Consensus 119 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~ 194 (222)
T 1ryp_I 119 TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPN 194 (222)
T ss_dssp EEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCC
T ss_pred EEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEeceecCC
Confidence 99999999999999999999999997 2 222 223478999999999999 99887766543
No 31
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.97 E-value=3.1e-30 Score=201.72 Aligned_cols=140 Identities=14% Similarity=0.190 Sum_probs=126.3
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--c-----CCCceEeEEEEEEcCCCCCEEE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--S-----RSPYNCNMLIAGHDPEEGPQLF 73 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~-----~rP~~vs~ii~G~D~~~gp~Ly 73 (160)
|+++|..+|++.+++.++.+++.|+++++++++++.++++++++++.++| + .|||+|++||||||+ +||+||
T Consensus 76 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly 154 (241)
T 1iru_E 76 CAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLF 154 (241)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEE
T ss_pred EEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEE
Confidence 57899999999999999999999999999999999999999999977755 2 689999999999994 899999
Q ss_pred EEcCCcceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHH-------hhcCCCEEEEEEcCCC-eEEcCCccc
Q psy12630 74 FIDYLASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRL-------IINVPNFKVTMVSKDG-IKHLPPIKA 137 (160)
Q Consensus 74 ~vD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~-------~~s~~~i~i~iitk~g-~~~~~~~~~ 137 (160)
++||+|++.+++++++|+|+..++++||+.|++ + ++.+. ..++++++|++|+++| +++++++++
T Consensus 155 ~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei 234 (241)
T 1iru_E 155 HMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEEL 234 (241)
T ss_dssp EECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSCCEECCHHHH
T ss_pred EECCCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCCeEECCHHHH
Confidence 999999999999999999999999999999998 2 22222 2478999999999998 799999999
Q ss_pred cCcc
Q psy12630 138 KNIP 141 (160)
Q Consensus 138 ~~~~ 141 (160)
+.+.
T Consensus 235 ~~~~ 238 (241)
T 1iru_E 235 EEVI 238 (241)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 32
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.97 E-value=1.7e-29 Score=196.98 Aligned_cols=136 Identities=22% Similarity=0.343 Sum_probs=122.0
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+|.+ + +||++++||||||+ +||+||++||+|+
T Consensus 43 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-~--~~~~v~llvaG~D~-~gp~Ly~idp~G~ 118 (234)
T 1iru_I 43 CCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRY-R--GYIGAALVLGGVDV-TGPHLYSIYPHGS 118 (234)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT-T--TCSCEEEEEEEECS-SCEEEEEECTTSC
T ss_pred EEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-C--CCCceeEEEEEEcC-CCCEEEEECCCCC
Confidence 578999999999999999999999999999999999999999999988 3 59999999999997 7899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----HH--------HHHhhcCCCEEEEEEcCCCeEEcCCccccCc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----VQ--------KRLIINVPNFKVTMVSKDGIKHLPPIKAKNI 140 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~--------~~~~~s~~~i~i~iitk~g~~~~~~~~~~~~ 140 (160)
+.+++++++|+|++.++++||+.|++ + ++ .+++.++++++|++|+++|++.++++++..-
T Consensus 119 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~ 194 (234)
T 1iru_I 119 TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNK 194 (234)
T ss_dssp EEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCC
T ss_pred EEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEEcceecCcc
Confidence 99999999999999999999999997 1 22 2233468999999999999998887655443
No 33
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.97 E-value=7.6e-30 Score=198.97 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=124.4
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc-cCCCceEeEEEEEEcCCCC-----CEEEE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR-SRSPYNCNMLIAGHDPEEG-----PQLFF 74 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r-~~rP~~vs~ii~G~D~~~g-----p~Ly~ 74 (160)
|+++|..+|++.++++++.+++.|+++++++++++.++++|++++|.+++ .+|||+|++||||||+++| |+||+
T Consensus 43 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~ 122 (235)
T 1q5q_H 43 AGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVS 122 (235)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEE
T ss_pred EEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEE
Confidence 57899999999999999999999999999999999999999999998754 3789999999999997557 99999
Q ss_pred EcCCcceeee--CEEEEecChHHHHHHHhccCCH----H----HHHHH--------hhcCC--CE-----EEEEEcCCCe
Q psy12630 75 IDYLASLIEI--PYITHGYPGIVTLSIMGEYHRS----E----VQKRL--------IINVP--NF-----KVTMVSKDGI 129 (160)
Q Consensus 75 vD~~G~~~~~--~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~--------~~s~~--~i-----~i~iitk~g~ 129 (160)
+||+|++.++ +++++|+|+.+++++||+.|++ + ++.+. +.+++ ++ +|++|+++|+
T Consensus 123 idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~ 202 (235)
T 1q5q_H 123 YDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGA 202 (235)
T ss_dssp ECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEE
T ss_pred ECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCe
Confidence 9999999999 9999999999999999999997 2 22222 22443 23 9999999999
Q ss_pred EEcCCccccCcc
Q psy12630 130 KHLPPIKAKNIP 141 (160)
Q Consensus 130 ~~~~~~~~~~~~ 141 (160)
+++++++++++.
T Consensus 203 ~~l~~~ei~~~~ 214 (235)
T 1q5q_H 203 VHVSEETTSELA 214 (235)
T ss_dssp EECCHHHHHHHH
T ss_pred EEeCHHHHHHHH
Confidence 999999998886
No 34
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.97 E-value=6.9e-30 Score=200.36 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=126.0
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
++++|..+|++.+++.++.+++.|+++++++++++.+|+++++++|.++| +.|||++++|||||| +||+||++||+
T Consensus 76 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~ 153 (246)
T 1j2p_A 76 AATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPS 153 (246)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTT
T ss_pred EEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCC
Confidence 57899999999999999999999999999999999999999999998876 468999999999999 78999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHH-------hhcCCCEEEEEEc-CC-CeEEcCCccccCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRL-------IINVPNFKVTMVS-KD-GIKHLPPIKAKNIP 141 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~-------~~s~~~i~i~iit-k~-g~~~~~~~~~~~~~ 141 (160)
|++.+++++++|+|+..++++||+.|++ + ++.+. ..++++++|++|+ ++ |++++++++++.+.
T Consensus 154 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~ 233 (246)
T 1j2p_A 154 GALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYV 233 (246)
T ss_dssp CCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEECCHHHHHHHH
T ss_pred ceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEECCHHHHHHHH
Confidence 9999999999999999999999999997 2 22222 2478999999999 64 79999999998876
No 35
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.96 E-value=1.5e-29 Score=198.85 Aligned_cols=141 Identities=16% Similarity=0.209 Sum_probs=126.4
Q ss_pred CceecChhHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQL-YKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDY 77 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~-~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~ 77 (160)
|+++|..+|++.++++++.+++. |++.++.+++++.+++.++++++.+++ ++|||+|++||||||+++||+||++||
T Consensus 73 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp 152 (250)
T 1ryp_B 73 AVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDP 152 (250)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECT
T ss_pred EEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECC
Confidence 57899999999999999999999 999999999999999999999999877 368999999999999767899999999
Q ss_pred CcceeeeCEEEEecChHHHHHHHhccCCH----H----HHHHHh-------hcCCCEEEEEEcCCC--------------
Q psy12630 78 LASLIEIPYITHGYPGIVTLSIMGEYHRS----E----VQKRLI-------INVPNFKVTMVSKDG-------------- 128 (160)
Q Consensus 78 ~G~~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~~-------~s~~~i~i~iitk~g-------------- 128 (160)
+|++.+++++++|+|+..++++||+.|++ + ++.+.+ +++++++|++|+++|
T Consensus 153 ~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~ 232 (250)
T 1ryp_B 153 SGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKG 232 (250)
T ss_dssp TSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCC
T ss_pred CCCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCC
Confidence 99999999999999999999999999997 2 222222 378999999999862
Q ss_pred --eEEcCCccccCcc
Q psy12630 129 --IKHLPPIKAKNIP 141 (160)
Q Consensus 129 --~~~~~~~~~~~~~ 141 (160)
+++++++|++.+.
T Consensus 233 ~~~~~l~~~ei~~~l 247 (250)
T 1ryp_B 233 PRFRKLTSQEINDRL 247 (250)
T ss_dssp CSEEECCHHHHHHHH
T ss_pred CCeEECCHHHHHHHH
Confidence 8999999988776
No 36
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.96 E-value=1.1e-29 Score=199.11 Aligned_cols=138 Identities=12% Similarity=0.080 Sum_probs=123.2
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|..+|++.++++++.+++.|+++++++++++.+|+++++++|.+++ ++|||+|++||||||+ +||+||++||+
T Consensus 72 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~ 150 (244)
T 1ryp_G 72 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPS 150 (244)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTT
T ss_pred EEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCC
Confidence 57899999999999999999999999999999999999999999999876 3699999999999996 79999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhcc---CCH----H----HHHH--------HhhcCCCEEEEEEcC---CCeEEcCCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEY---HRS----E----VQKR--------LIINVPNFKVTMVSK---DGIKHLPPIK 136 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~---~~~----e----l~~~--------~~~s~~~i~i~iitk---~g~~~~~~~~ 136 (160)
|++.+++++++|+|+..++++||+. |++ + ++.+ +..++++++|++|++ +|++++.+.+
T Consensus 151 G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~ 230 (244)
T 1ryp_G 151 GSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGD 230 (244)
T ss_dssp SCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTH
T ss_pred CCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHH
Confidence 9999999999999999999999997 987 2 2222 223678999999998 8999888876
Q ss_pred ccC
Q psy12630 137 AKN 139 (160)
Q Consensus 137 ~~~ 139 (160)
+..
T Consensus 231 ~~~ 233 (244)
T 1ryp_G 231 LLQ 233 (244)
T ss_dssp HHH
T ss_pred HHH
Confidence 633
No 37
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.96 E-value=2.5e-29 Score=199.01 Aligned_cols=136 Identities=21% Similarity=0.271 Sum_probs=121.9
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+++.++.+++.|+++++++++++.+++++++.+|++ .+||++++||||||+ +||+||++||+|+
T Consensus 72 ~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~---~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~ 147 (261)
T 3nzj_H 72 CAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY---QGHIGAYLIVAGVDP-TGSHLFSIHAHGS 147 (261)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT---TTCSCEEEEEEEEET-TEEEEEEECTTSC
T ss_pred EEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHh---cCcccEEEEEEEEeC-CCCEEEEECCCcc
Confidence 578999999999999999999999999999999999999999999987 369999999999997 7899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----HH--------HHHhhcCCCEEEEEEcCCC-eEEcCCccccCc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----VQ--------KRLIINVPNFKVTMVSKDG-IKHLPPIKAKNI 140 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l~--------~~~~~s~~~i~i~iitk~g-~~~~~~~~~~~~ 140 (160)
+.+++++++|+|+..++++||+.|++ | ++ .++..++++++|++|++|| ++++.++.+..-
T Consensus 148 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~ 224 (261)
T 3nzj_H 148 TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNV 224 (261)
T ss_dssp EEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCC
T ss_pred EEecCeEEeccchHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCc
Confidence 99999999999999999999999997 2 22 2333578999999999999 788877655444
No 38
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.96 E-value=2.6e-29 Score=191.04 Aligned_cols=136 Identities=16% Similarity=0.184 Sum_probs=121.1
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+ | |||++++||||||+++||+||+ |+|+
T Consensus 43 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-~--~p~~v~~lvaG~D~~~~p~ly~--p~G~ 117 (199)
T 3unf_N 43 CALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKY-R--EDLLAHLIVAGWDQREGGQVYG--TMGG 117 (199)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHT-T--TTCCCCEEEEEEETTTEEEEEE--CGGG
T ss_pred EEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-C--CCceEEEEEEEEeCCCCcEEEE--ECCC
Confidence 578999999999999999999999999999999999999999999988 3 6999999999999767899999 9999
Q ss_pred eeee-CEEEEecChHHHHHHHhccCCH----H----HH--------HHHhhcCCCEEEEEEcCCC--eEEcCCccccCcc
Q psy12630 81 LIEI-PYITHGYPGIVTLSIMGEYHRS----E----VQ--------KRLIINVPNFKVTMVSKDG--IKHLPPIKAKNIP 141 (160)
Q Consensus 81 ~~~~-~~~a~G~gs~~a~~~Le~~~~~----e----l~--------~~~~~s~~~i~i~iitk~g--~~~~~~~~~~~~~ 141 (160)
+.++ .++++|+|+..++++||+.|++ + ++ .+++.++++++|++|+++| ++.++++|++++.
T Consensus 118 ~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 118 MLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFY 197 (199)
T ss_dssp CCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred ceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence 7666 5667899999999999999998 1 22 2333578999999999999 6789999998876
No 39
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.96 E-value=4e-29 Score=190.74 Aligned_cols=129 Identities=19% Similarity=0.280 Sum_probs=114.7
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcC-CCCCEEEEEcCCc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDP-EEGPQLFFIDYLA 79 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~-~~gp~Ly~vD~~G 79 (160)
|+++|..+|++.+++.++.+++.|+++++++++++.+|+++++.+|.+ | ..||++++||||||+ ++||+||++||+|
T Consensus 50 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~-~-~~P~~v~~lvaG~D~~~~gp~Ly~idp~G 127 (204)
T 1ryp_J 50 LGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYER-R-FGPYFVGPVVAGINSKSGKPFIAGFDLIG 127 (204)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTT-T-TSCCCEEEEEEEECTTTCCEEEEEECTTC
T ss_pred EEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHh-c-CCCceEEEEEEEEeCCCCceEEEEECCCC
Confidence 578999999999999999999999999999999999999999999877 6 569999999999996 5789999999999
Q ss_pred ceeee-CEEEEecChHHHHHHHhccCCH----H----HHH--------HHhhcCCCEEEEEEcCCCeEE
Q psy12630 80 SLIEI-PYITHGYPGIVTLSIMGEYHRS----E----VQK--------RLIINVPNFKVTMVSKDGIKH 131 (160)
Q Consensus 80 ~~~~~-~~~a~G~gs~~a~~~Le~~~~~----e----l~~--------~~~~s~~~i~i~iitk~g~~~ 131 (160)
++.++ .++++|+|+..++++||+.|++ + ++. +++.++++++|++|+++|++.
T Consensus 128 ~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 196 (204)
T 1ryp_J 128 CIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVK 196 (204)
T ss_dssp CEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred CccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEE
Confidence 99766 6799999999999999999997 2 222 223478999999999999754
No 40
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.96 E-value=5.4e-29 Score=190.21 Aligned_cols=128 Identities=19% Similarity=0.287 Sum_probs=115.3
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+.++++.+++.|++++++ ++++.+++++++++|.+ | .+ |++++||||||+++||+||++||+|+
T Consensus 52 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~-~-~~-~~~~~lvaG~D~~~gp~Ly~id~~G~ 127 (205)
T 1ryp_H 52 CCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYEN-K-DN-LTAGIIVAGYDDKNKGEVYTIPLGGS 127 (205)
T ss_dssp EEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHT-T-TT-CCEEEEEEEEETTTEEEEEEECTTSC
T ss_pred EEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhh-h-cC-ceEEEEEEEEecCCCcEEEEECCCcc
Confidence 578999999999999999999999999999 99999999999999999 4 23 99999999999767899999999999
Q ss_pred eeeeCEEEEecChHHHHHHHhccCCH----H----H--------HHHHhhcCCCEEEEEEcCCCeEEc
Q psy12630 81 LIEIPYITHGYPGIVTLSIMGEYHRS----E----V--------QKRLIINVPNFKVTMVSKDGIKHL 132 (160)
Q Consensus 81 ~~~~~~~a~G~gs~~a~~~Le~~~~~----e----l--------~~~~~~s~~~i~i~iitk~g~~~~ 132 (160)
+.+++++++|+|+..++++||+.|++ + + ..+++.++++++|++|+++|++..
T Consensus 128 ~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~ 195 (205)
T 1ryp_H 128 VHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 195 (205)
T ss_dssp CEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEE
T ss_pred EEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEE
Confidence 99999999999999999999999997 1 2 223345799999999999996543
No 41
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.96 E-value=3.3e-29 Score=198.11 Aligned_cols=140 Identities=17% Similarity=0.283 Sum_probs=121.3
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHH-HHHhccCCCceEeEEEEEEc--C-CCCCEEEEE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNG-YELSPRAAAYYTRKQL-AEYLRSRSPYNCNMLIAGHD--P-EEGPQLFFI 75 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~-~~~~~~~la~~ls~~l-~~~~r~~rP~~vs~ii~G~D--~-~~gp~Ly~v 75 (160)
|+++|..+|++.|++.++.+++.|++.++ .+|+++.+|+++++.+ +.++..+|||+|++|||||| + ++||+||++
T Consensus 62 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~i 141 (259)
T 1q5q_A 62 FAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRI 141 (259)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEE
T ss_pred EEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEE
Confidence 57899999999999999999999999987 4999999999999953 33322479999999999999 3 489999999
Q ss_pred cCCccee-eeCEEEEecChHHHHHHHhccCCH----H----HH-------------HHHhhcCCCEEEEEEcCC----Ce
Q psy12630 76 DYLASLI-EIPYITHGYPGIVTLSIMGEYHRS----E----VQ-------------KRLIINVPNFKVTMVSKD----GI 129 (160)
Q Consensus 76 D~~G~~~-~~~~~a~G~gs~~a~~~Le~~~~~----e----l~-------------~~~~~s~~~i~i~iitk~----g~ 129 (160)
||+|++. +++++++|+|++.++++||+.|++ + ++ .+++ ++++++|++|+++ ++
T Consensus 142 dp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~ 220 (259)
T 1q5q_A 142 TYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAF 220 (259)
T ss_dssp ETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCE
T ss_pred CCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCe
Confidence 9999999 789999999999999999999997 1 22 2333 6889999999999 69
Q ss_pred EEcCCccccCcc
Q psy12630 130 KHLPPIKAKNIP 141 (160)
Q Consensus 130 ~~~~~~~~~~~~ 141 (160)
+++++++++.+.
T Consensus 221 ~~l~~~ei~~~~ 232 (259)
T 1q5q_A 221 RRIAGTALEQLV 232 (259)
T ss_dssp EECCHHHHHTTS
T ss_pred EECCHHHHHHHH
Confidence 999999998886
No 42
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.96 E-value=4.1e-29 Score=190.77 Aligned_cols=129 Identities=19% Similarity=0.306 Sum_probs=114.6
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcC-CCCCEEEEEcCCc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDP-EEGPQLFFIDYLA 79 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~-~~gp~Ly~vD~~G 79 (160)
|+++|..+|++.++++++.+++.|+++++++++++.+|+++++++|.+ | ..||++++||||||+ ++||+||++||+|
T Consensus 51 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~-r-~~P~~v~~lvaG~D~~~~~p~Ly~idp~G 128 (205)
T 1iru_J 51 IGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEK-R-FGPYYTEPVIAGLDPKTFKPFICSLDLIG 128 (205)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTT-T-TSCCSCCCEEEEECTTSCCEEEEEECTTC
T ss_pred EEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh-c-CCCceEEEEEEEEeCCCCCeEEEEECCCC
Confidence 578999999999999999999999999999999999999999999877 5 569999999999995 4789999999999
Q ss_pred ceeee-CEEEEecChHHHHHHHhccCCH----H----HHH--------HHhhcCCCEEEEEEcCCCeEE
Q psy12630 80 SLIEI-PYITHGYPGIVTLSIMGEYHRS----E----VQK--------RLIINVPNFKVTMVSKDGIKH 131 (160)
Q Consensus 80 ~~~~~-~~~a~G~gs~~a~~~Le~~~~~----e----l~~--------~~~~s~~~i~i~iitk~g~~~ 131 (160)
++.++ .|+++|+|+..++++||+.|++ + ++. +++.++++++|++|+++|++.
T Consensus 129 ~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 197 (205)
T 1iru_J 129 CPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT 197 (205)
T ss_dssp CEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred CccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEE
Confidence 99766 6799999999999999999997 2 222 223468999999999999654
No 43
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.96 E-value=3.7e-29 Score=200.50 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=119.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc--cCCCceEeEEEEEEcCCCCCEEEEEcCC
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCNMLIAGHDPEEGPQLFFIDYL 78 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r--~~rP~~vs~ii~G~D~~~gp~Ly~vD~~ 78 (160)
|+++|+.+|++.|+++++.+++.|+++++++|+++.+|+++++++|.+++ .+|||+|++||||||+ +||+||++||+
T Consensus 76 ~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~ 154 (288)
T 3nzj_F 76 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPS 154 (288)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTT
T ss_pred EEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCC
Confidence 57899999999999999999999999999999999999999999999976 4799999999999997 78999999999
Q ss_pred cceeeeCEEEEecChHHHHHHHhcc---CCH----H----HHHHHh--------hcCCCEEEEEEcC---CCeEEcCCcc
Q psy12630 79 ASLIEIPYITHGYPGIVTLSIMGEY---HRS----E----VQKRLI--------INVPNFKVTMVSK---DGIKHLPPIK 136 (160)
Q Consensus 79 G~~~~~~~~a~G~gs~~a~~~Le~~---~~~----e----l~~~~~--------~s~~~i~i~iitk---~g~~~~~~~~ 136 (160)
|++.+++++++|+|+..++++||+. |++ + ++.+.+ .+++.++|++|++ +|.+++.|.+
T Consensus 155 G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~ 234 (288)
T 3nzj_F 155 GSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGD 234 (288)
T ss_dssp SCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHH
T ss_pred CCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHH
Confidence 9999999999999999999999999 887 2 222222 3577899999999 3566666554
Q ss_pred c
Q psy12630 137 A 137 (160)
Q Consensus 137 ~ 137 (160)
+
T Consensus 235 ~ 235 (288)
T 3nzj_F 235 L 235 (288)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.96 E-value=6e-29 Score=199.80 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=124.7
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc-cCCCceEeEEEEEEcCCCC-----CEEEE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR-SRSPYNCNMLIAGHDPEEG-----PQLFF 74 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r-~~rP~~vs~ii~G~D~~~g-----p~Ly~ 74 (160)
|+++|..+|++.++++++.+++.|+++++++++++.++++|++++|.+++ .+|||+|++||||||+++| |+||+
T Consensus 108 ~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~ 187 (294)
T 1q5r_H 108 AGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVS 187 (294)
T ss_dssp EEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEE
T ss_pred EEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEE
Confidence 57899999999999999999999999999999999999999999998854 4799999999999997546 99999
Q ss_pred EcCCcceeee--CEEEEecChHHHHHHHhccCCH----H----HHHHH--------hhcCC--CE-----EEEEEcCCCe
Q psy12630 75 IDYLASLIEI--PYITHGYPGIVTLSIMGEYHRS----E----VQKRL--------IINVP--NF-----KVTMVSKDGI 129 (160)
Q Consensus 75 vD~~G~~~~~--~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~--------~~s~~--~i-----~i~iitk~g~ 129 (160)
+||+|++.++ +++++|+|+.+++++||+.|++ + ++.+. +.+++ ++ +|++|+++|+
T Consensus 188 iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~ 267 (294)
T 1q5r_H 188 YDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGA 267 (294)
T ss_dssp ECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEE
T ss_pred ECCCCeEEecCCCeEEEecCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCE
Confidence 9999999999 8999999999999999999997 2 22222 22343 35 9999999999
Q ss_pred EEcCCccccCcc
Q psy12630 130 KHLPPIKAKNIP 141 (160)
Q Consensus 130 ~~~~~~~~~~~~ 141 (160)
+++++++++++.
T Consensus 268 ~~l~~~ei~~~l 279 (294)
T 1q5r_H 268 VHVSEETTSELA 279 (294)
T ss_dssp EECCHHHHHHHH
T ss_pred EEcCHHHHHHHH
Confidence 999999998886
No 45
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.95 E-value=4.5e-28 Score=194.48 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=121.4
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc-cCCCceEeEEEEEEcCCCC-----CEEEE
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR-SRSPYNCNMLIAGHDPEEG-----PQLFF 74 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r-~~rP~~vs~ii~G~D~~~g-----p~Ly~ 74 (160)
|+++|..+|++.++++++.+++.|++.++++++++.+++++++++|.+++ .+|||+|++||||||++++ |+||+
T Consensus 100 ~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~ 179 (291)
T 2jay_A 100 TGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVS 179 (291)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEE
T ss_pred EEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEE
Confidence 57899999999999999999999999999999999999999999998743 3679999999999997555 89999
Q ss_pred EcCCccee--eeCEEEEecChHHHHHHHhccCCH----H----HHHHHh--------hcCCC--E-----EEEEEcCCCe
Q psy12630 75 IDYLASLI--EIPYITHGYPGIVTLSIMGEYHRS----E----VQKRLI--------INVPN--F-----KVTMVSKDGI 129 (160)
Q Consensus 75 vD~~G~~~--~~~~~a~G~gs~~a~~~Le~~~~~----e----l~~~~~--------~s~~~--i-----~i~iitk~g~ 129 (160)
+||+|++. +++++++|+|+.+++++||+.|++ + ++.+.+ .+++. + +|++|+++|+
T Consensus 180 iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~ 259 (291)
T 2jay_A 180 FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGA 259 (291)
T ss_dssp ECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEE
T ss_pred ECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCe
Confidence 99999998 889999999999999999999998 2 222222 23432 1 6999999999
Q ss_pred EEcCCccccCcc
Q psy12630 130 KHLPPIKAKNIP 141 (160)
Q Consensus 130 ~~~~~~~~~~~~ 141 (160)
+++++++++.+.
T Consensus 260 ~~l~~~ei~~~~ 271 (291)
T 2jay_A 260 VDVPESRIAELA 271 (291)
T ss_dssp EECCHHHHHHHH
T ss_pred EEcCHHHHHHHH
Confidence 999999998886
No 46
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.86 E-value=1.4e-21 Score=145.68 Aligned_cols=113 Identities=13% Similarity=0.198 Sum_probs=95.9
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
++++|..+|++.|.++++.+++.|++ +....+..|++.++++ |.+||+ +++++|+| ||+||++||+|+
T Consensus 44 ~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~-~~~r~~--~~~l~g~d---~p~Ly~~d~~G~ 111 (174)
T 1g3k_A 44 AGFAGGTADAFTLFELFERKLEMHQG------HLLKSAVELAKDWRTD-RALRKL--EAMLIVAD---EKESLIITGIGD 111 (174)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHS-TTGGGC--CCEEEEEC---SSCEEEEETTTE
T ss_pred EEeCccHHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHHhc-cCcCcc--eEEEEEEC---CCEEEEEcCCCc
Confidence 57899999999999999999999985 4566677888888877 655675 56788887 699999999999
Q ss_pred eeeeC---EEEEecChHHHHHHHhccCC-H-----HH--------HHHHhhcCCCEEEEEEc
Q psy12630 81 LIEIP---YITHGYPGIVTLSIMGEYHR-S-----EV--------QKRLIINVPNFKVTMVS 125 (160)
Q Consensus 81 ~~~~~---~~a~G~gs~~a~~~Le~~~~-~-----el--------~~~~~~s~~~i~i~iit 125 (160)
+.+++ ++|+|+|+++++++||+.|+ + ++ ..|++.++++++|.+|+
T Consensus 112 ~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 112 VVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp EECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred EEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHhccccCCceEEEEec
Confidence 99988 99999999999999999998 5 22 34555689999999986
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.85 E-value=1.3e-21 Score=145.38 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=93.2
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
|+++|..+|++.+.++++.+++.|+++ .++.++++.+ .++++ +..|||++++|+| | ||+||++||+|+
T Consensus 44 ~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~-~~~~~-~~~~~~~~~~lv~--D---~p~Ly~~d~~G~ 111 (171)
T 1m4y_A 44 AGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAAVELAK-DWRTD-RVLRRLEALLLVA--D---KENIFIISGNGE 111 (171)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHH-HHHHC-TTGGGCCCEEEEE--C---SSCEEEECTTSC
T ss_pred EEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHH-HHHHh-CCCCceEEEEEEE--c---CCEEEEECCCCC
Confidence 578999999999999999999998754 3777777654 66665 4456899999888 5 799999999999
Q ss_pred eeeeC--EEEEecChHHHHHHHhccCC-H-----HH--------HHHHhhcCCCEEEEEE
Q psy12630 81 LIEIP--YITHGYPGIVTLSIMGEYHR-S-----EV--------QKRLIINVPNFKVTMV 124 (160)
Q Consensus 81 ~~~~~--~~a~G~gs~~a~~~Le~~~~-~-----el--------~~~~~~s~~~i~i~ii 124 (160)
+.+++ +.++|+|+.+++++||+.|+ + ++ ..|++.++++++|.++
T Consensus 112 ~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 112 VIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp EECCSSSEEEESTTHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred EEecCCCEEEECCcHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 99987 99999999999999999998 5 22 3345568999998764
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.83 E-value=1.9e-20 Score=140.34 Aligned_cols=113 Identities=13% Similarity=0.177 Sum_probs=92.8
Q ss_pred CceecChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccCCCceEeEEEEEEcCCCCCEEEEEcCCcc
Q psy12630 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLAS 80 (160)
Q Consensus 1 ~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~r~~rP~~vs~ii~G~D~~~gp~Ly~vD~~G~ 80 (160)
++++|..+|++.|.++++.+++.|+ | ..++.++ .+++.++++ +.+|||++++||| | ||+||++||+|+
T Consensus 50 ~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~~~~~~-~l~~~~~~~-~~~rp~~~~~lva--d---~p~ly~~d~~G~ 117 (180)
T 2z3b_A 50 AGFAGSVADAFTLFEKFEAKLEEYN---G--NLKRAAV-ELAKEWRSD-KVLRKLEAMLIVM--N---QDTLLLVSGTGE 117 (180)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHHTT---T--CHHHHHH-HHHHHHHHC-TTGGGCCCCEEEE--C---SSCEEEECTTCC
T ss_pred EEeCchHHHHHHHHHHHHHHHHHhc---C--ChHHHHH-HHHHHHHhh-hCcCcceEEEEEE--c---CCeEEEECCCCc
Confidence 5789999999999999999999987 3 3344444 356666555 4578999999999 4 599999999999
Q ss_pred eee--eCEEEEecChHHHHHHHhccCCH---H-----H--------HHHHhhcCCCEEEEEEc
Q psy12630 81 LIE--IPYITHGYPGIVTLSIMGEYHRS---E-----V--------QKRLIINVPNFKVTMVS 125 (160)
Q Consensus 81 ~~~--~~~~a~G~gs~~a~~~Le~~~~~---e-----l--------~~~~~~s~~~i~i~iit 125 (160)
+.+ ++++|+|+|+.+++++||+.|++ + + .+|++.++++++|.+|+
T Consensus 118 ~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~eel~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 118 VIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp EECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred EEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 998 49999999999999999999975 3 2 33455789999999873
No 49
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=45.97 E-value=21 Score=24.64 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=32.7
Q ss_pred ecChhHHHHHHHHHHHHH-H--HHHHhc-------CCCCCHHHHHHHHHHHHHHHh
Q psy12630 4 TGDSGDTVQFAEFIAKNI-Q--LYKMRN-------GYELSPRAAAYYTRKQLAEYL 49 (160)
Q Consensus 4 sG~~aD~~~l~~~l~~~~-~--~~~~~~-------~~~~~~~~la~~ls~~l~~~~ 49 (160)
.|+.-|+..+.+.++..+ . .|++-+ +..++.+.+|.+|-+.|...+
T Consensus 62 ~GmV~Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~~~l 117 (140)
T 1b66_A 62 TGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLL 117 (140)
T ss_dssp TCCSSCHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHHHhc
Confidence 577778888888777622 2 233333 457899999999999987764
No 50
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=34.09 E-value=11 Score=24.25 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=36.7
Q ss_pred eecChhHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHhc
Q psy12630 3 VTGDSGDTVQFAEFIAKNIQLYKMRNG-YELSPRAAAYYTRKQLAEYLR 50 (160)
Q Consensus 3 ~sG~~aD~~~l~~~l~~~~~~~~~~~~-~~~~~~~la~~ls~~l~~~~r 50 (160)
++....|-+.+++.+...+..|--... ..+.+.-+-.++++++|+-++
T Consensus 2 ~i~ip~e~k~~id~i~~kIe~FL~s~~~~~l~l~pCN~f~RkLIYQ~~~ 50 (87)
T 1ug8_A 2 SSGSSGDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLS 50 (87)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHCSSCCEEECCCCCSHHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHHHHhCCCCCceecCCchHHHHHHHHHHHH
Confidence 455678888999999888887755544 336666688899999998866
No 51
>3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A {Streptomyces coelicolor}
Probab=32.75 E-value=51 Score=22.98 Aligned_cols=47 Identities=15% Similarity=0.035 Sum_probs=33.6
Q ss_pred ecChhHHHHHHHHHHHHHHHH--HHhc------CCCCCHHHHHHHHHHHHHHHhc
Q psy12630 4 TGDSGDTVQFAEFIAKNIQLY--KMRN------GYELSPRAAAYYTRKQLAEYLR 50 (160)
Q Consensus 4 sG~~aD~~~l~~~l~~~~~~~--~~~~------~~~~~~~~la~~ls~~l~~~~r 50 (160)
.|+.-|+..+.+.++.-...+ ++.+ +..++.+.+|.++-+.+...+.
T Consensus 66 ~GmVvDF~~lK~~ik~i~~~lDH~~Ln~~p~f~~~npTaEnlA~~i~~~L~~~L~ 120 (152)
T 3d7j_A 66 DNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVH 120 (152)
T ss_dssp TSSSSCHHHHHHHHHHHHHTTTTEEGGGCGGGTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHhcCCcccccccccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 477788888888887744322 2222 3478999999999999987754
No 52
>1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of pathogenic protozoa consortium, SGPP, structural genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum} SCOP: d.96.1.2
Probab=31.36 E-value=63 Score=23.00 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy12630 30 YELSPRAAAYYTRKQLAEYL 49 (160)
Q Consensus 30 ~~~~~~~la~~ls~~l~~~~ 49 (160)
..++++.+|.++.+.+...+
T Consensus 131 ~~pTaEnlA~~i~~~L~~~L 150 (181)
T 1y13_A 131 KHSSTEEIGQYILNQLIEEM 150 (181)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 46899999999999997764
No 53
>3lx3_A 6-pyruvoyl tetrahydrobiopterin synthase; PTS, PTP synthase, PTPS, metal-binding, tetrahydrobiopterin biosynthesis, folate biosynthesis; HET: XTN; 1.55A {Plasmodium vivax} SCOP: d.96.1.2 PDB: 2a0s_A* 3m0n_A* 3lze_A*
Probab=30.90 E-value=61 Score=23.21 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy12630 30 YELSPRAAAYYTRKQLAEYL 49 (160)
Q Consensus 30 ~~~~~~~la~~ls~~l~~~~ 49 (160)
..++++.+|.+|.+.|...+
T Consensus 130 ~npTaEnlA~~i~~~L~~~L 149 (180)
T 3lx3_A 130 KHSSTEEIGLYILNQLIEEI 149 (180)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 36899999999999987764
No 54
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A 3qn9_A 3qna_A*
Probab=28.88 E-value=89 Score=21.35 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=29.9
Q ss_pred ecChhHHHHHHHHHHHHHHHHH--HhcC----CCCCHHHHHHHHHHHHHHH
Q psy12630 4 TGDSGDTVQFAEFIAKNIQLYK--MRNG----YELSPRAAAYYTRKQLAEY 48 (160)
Q Consensus 4 sG~~aD~~~l~~~l~~~~~~~~--~~~~----~~~~~~~la~~ls~~l~~~ 48 (160)
.|+.-|+..+.+.++..+..+. +.+. ..++++.+|.+|.+.+...
T Consensus 66 ~GmV~Df~~lk~~~~~vi~~lDH~~Lndv~~~~~pTaEnlA~~i~~~L~~~ 116 (138)
T 2oba_A 66 TGWIRDFAEIKAIFKPIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPL 116 (138)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHTTSBGGGSTTCSSCCHHHHHHHHHHHHGGG
T ss_pred CCEEEeHHHHHHHHHHHHHhCCCccchhcCCCCCCCHHHHHHHHHHHHHHh
Confidence 4677778777777776443322 2222 4689999999888887554
No 55
>2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; 1.80A {Caenorhabditis elegans} SCOP: d.96.1.2
Probab=26.46 E-value=68 Score=21.89 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=31.3
Q ss_pred ecChhHHHHHHHHHHHHHH--HHHHhc-------CCCCCHHHHHHHHHHHHHHHh
Q psy12630 4 TGDSGDTVQFAEFIAKNIQ--LYKMRN-------GYELSPRAAAYYTRKQLAEYL 49 (160)
Q Consensus 4 sG~~aD~~~l~~~l~~~~~--~~~~~~-------~~~~~~~~la~~ls~~l~~~~ 49 (160)
.|+.-|+..+.+.++.-.. .|++-+ +..++++.+|.+|.+.+...+
T Consensus 62 ~Gmv~Df~~lk~~~~~i~~~lDH~~Ln~dv~~f~~~~pT~EnlA~~i~~~l~~~l 116 (140)
T 2g64_A 62 SGMVYDLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVM 116 (140)
T ss_dssp TCCSSCHHHHHHHHHHHHHTTTTEEHHHHCGGGGTSCCCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEHHHHHHHHHHHHhcCCCcccchhhcccCCCCCCHHHHHHHHHHHHHHhc
Confidence 5677777777777763222 222222 357899999999999997763
No 56
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=25.57 E-value=1.5e+02 Score=19.75 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy12630 7 SGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRK 43 (160)
Q Consensus 7 ~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~ 43 (160)
..|--.+++.+|. |..++|..++++.+++.+..
T Consensus 47 Te~HW~VI~flR~----~Y~e~~~~P~iR~l~K~~~~ 79 (115)
T 1sau_A 47 TEEHWKIIRYLRD----YFIKYGVAPPVRMLVKHCKK 79 (115)
T ss_dssp CHHHHHHHHHHHH----HHHHHSSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHH
Confidence 3455566777766 55678888999999998833
No 57
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=21.84 E-value=1.2e+02 Score=19.72 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhc-----cCCCc
Q psy12630 23 LYKMRNGYELSPRAAAYYTRKQLAEYLR-----SRSPY 55 (160)
Q Consensus 23 ~~~~~~~~~~~~~~la~~ls~~l~~~~r-----~~rP~ 55 (160)
.++|+.| ++++..|+.+.++.-.. | ++|||
T Consensus 41 lr~YR~G--~~I~~Fc~kLl~LyG~~-Rk~LL~gmRpF 75 (98)
T 4fqn_A 41 LHEYRNG--ASIHEFCINLRQLYGDS-RKFLLLGLRPF 75 (98)
T ss_dssp HHHHHTT--CCHHHHHHHHHHHHCGG-GGGGGGGGGGG
T ss_pred HHHHHcC--CCHHHHHHHHHHHhchH-HHHHHhhccCC
Confidence 3556666 68888888887766444 4 36776
No 58
>2dj6_A Hypothetical protein PH0634; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS), structural G NPPSFA; 2.10A {Pyrococcus horikoshii} PDB: 2dtt_A*
Probab=21.03 E-value=1.5e+02 Score=19.23 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=29.5
Q ss_pred cChhHHHHHHHHHHHHHHH--HHHh---cCCCCCHHHHHHHHHHHHHHHh
Q psy12630 5 GDSGDTVQFAEFIAKNIQL--YKMR---NGYELSPRAAAYYTRKQLAEYL 49 (160)
Q Consensus 5 G~~aD~~~l~~~l~~~~~~--~~~~---~~~~~~~~~la~~ls~~l~~~~ 49 (160)
|+.-|+..+.+.++.-... |++- . ..++++.+|.++.+.+...+
T Consensus 44 gmv~Df~~lk~~~~~i~~~lDH~~Ln~v~-~~pT~E~lA~~i~~~l~~~l 92 (115)
T 2dj6_A 44 GYVMDFLELRKIVEEITKELDHRNLNNIF-ENPTTENIALWIGERIRDKL 92 (115)
T ss_dssp TBSSCHHHHHHHHHHHHTTTTTSBHHHHC-SSCCHHHHHHHHHHHHHHHC
T ss_pred CceeeHHHHHHHHHHHHHcCCCcchhheE-CCCCHHHHHHHHHHHHHHhc
Confidence 5666777777776662211 1111 1 68999999999999997763
No 59
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=20.01 E-value=2.2e+02 Score=19.49 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy12630 8 GDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQL 45 (160)
Q Consensus 8 aD~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~l 45 (160)
.|--.+++.+|. |..+++..++++.+++.+...+
T Consensus 64 e~HWeVI~flR~----fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 64 EEHWDIINFLRE----YYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp HHHHHHHHHHHH----HHHHHCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHCCCChHHHHHHHHHHHh
Confidence 344556666665 5567888899999999885444
Done!