RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12630
(160 letters)
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 143 bits (362), Expect = 5e-44
Identities = 75/155 (48%), Positives = 103/155 (66%), Gaps = 16/155 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ G++GDTVQFAE+I KN+QLYKMRNGYELSP AAA +TR+ LA+ LRSR+PY+ N+L
Sbjct: 44 LLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLL 103
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
+AG+D EGP L+++DYLA+L + P+ HGY +TLSI+ Y+
Sbjct: 104 LAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKC 163
Query: 106 -SEVQKRLIINVPNFKVTMVSKDGIKHLPPIKAKN 139
E+QKR I+N+P F V ++ K+GI L I
Sbjct: 164 LEELQKRFILNLPTFSVRIIDKNGIHDLDNISFPK 198
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 134 bits (340), Expect = 9e-41
Identities = 62/155 (40%), Positives = 97/155 (62%), Gaps = 17/155 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
M+ G++GDTVQFAE+I NIQLY +R YELSP+A + + R++LA+ +RSR PY N+L
Sbjct: 44 MSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVL 103
Query: 61 IAGHDPEE-GPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR-------------- 105
I G+D ++ P+L+ IDYL + +E+PY HGY G T S++ ++R
Sbjct: 104 IGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKL 163
Query: 106 --SEVQKRLIINVPNFKVTMVSKDGIKHLPPIKAK 138
E++KR+ ++ V +V KDGI+ + +A+
Sbjct: 164 CVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQAQ 198
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 104 bits (263), Expect = 5e-29
Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 20/158 (12%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMR-NGYELSPRAAAYYTRKQLAEYLRSRSPYNCNM 59
+ +GD D + + + + ++ +G+ SPRA + + + +P M
Sbjct: 51 LGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTM 110
Query: 60 LIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR-------------- 105
+I G+ + L ++D L E P + GY + ++ E
Sbjct: 111 VIGGYA-DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLV 169
Query: 106 ----SEVQKRLIINVPNFKVTMVSKDGIKHLPPIKAKN 139
+ R + F+ V++ G++ P+ +
Sbjct: 170 ERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTET 207
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 86.6 bits (215), Expect = 9e-22
Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 20/162 (12%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
G + DT + I+ N++L+ + G A ++ L Y R ++
Sbjct: 43 CCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRY---RGYIGAALV 99
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
+ G D GP L+ I S ++PY+T G + +++ + R
Sbjct: 100 LGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEA 158
Query: 106 -SEVQKRLIINVPNFKVTMVSKDGIKHLPPIKAKNIPEENKG 146
+ + + N + ++SK+ + L P N G
Sbjct: 159 IAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLG 200
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 85.4 bits (212), Expect = 2e-21
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ +G GD + + I +++YK N ++ A A L Y R PY +
Sbjct: 52 IGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTIL--YSRRFFPYYVYNI 109
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGY 91
I G D E ++ D + S + G
Sbjct: 110 IGGLDEEGKGAVYSFDPVGSYQRDSFKAGGS 140
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 79.7 bits (197), Expect = 4e-19
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 5/96 (5%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRN-----GYELSPRAAAYYTRKQLAEYLRSRSPY 55
+ ++GD D + + N L P Y + + +P
Sbjct: 51 VGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPL 110
Query: 56 NCNMLIAGHDPEEGPQLFFIDYLASLIEIPYITHGY 91
+++AG L +++ L P + G+
Sbjct: 111 WNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGF 146
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 78.5 bits (194), Expect = 8e-19
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKM-RNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNM 59
M+ G + D + +++ Y N +LS +AA + L Y + PY +
Sbjct: 52 MSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLL--YGKRFFPYYVHT 109
Query: 60 LIAGHDPEEGPQLFFIDYLASLIEIPYITHGY 91
+IAG D + ++ D + S G
Sbjct: 110 IIAGLDEDGKGAVYSFDPVGSYEREQCRAGGA 141
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 79.0 bits (195), Expect = 1e-18
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 5/96 (5%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRN-----GYELSPRAAAYYTRKQLAEYLRSRSPY 55
+ ++GD D + + N L P Y + + +P
Sbjct: 84 VGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPL 143
Query: 56 NCNMLIAGHDPEEGPQLFFIDYLASLIEIPYITHGY 91
+++AG L +++ L P + G+
Sbjct: 144 WNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGF 179
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 75.3 bits (186), Expect = 9e-18
Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYL-RSRSPYNCNM 59
+G + DT A+ + +++LY + G + AA E ++ +
Sbjct: 52 CCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAA-----SVFKELCYENKDNLTAGI 106
Query: 60 LIAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
++AG+D + +++ I S+ ++PY G
Sbjct: 107 IVAGYDDKNKGEVYTIPLGGSVHKLPYAIAG 137
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 67.6 bits (166), Expect = 7e-15
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+G + DT A+ + + + + AA ++ Y R ++
Sbjct: 43 CCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRY---REDLMAGII 99
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
IAG DP+EG Q++ + ++ + G
Sbjct: 100 IAGWDPQEGGQVYSVPMGGMMVRQSFAIGG 129
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 66.5 bits (163), Expect = 2e-14
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ +TG + D E LYK++ + P L Y R PY +
Sbjct: 50 LGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSL--YERRFGPYFVGPV 107
Query: 61 IAGHDPEEG-PQLFFIDYLASLIEIP-YITHG 90
+AG + + G P + D + + E +I G
Sbjct: 108 VAGINSKSGKPFIAGFDLIGCIDEAKDFIVSG 139
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 66.1 bits (162), Expect = 3e-14
Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSR--SPYNCN 58
+ G + D + ++ +L+++R +S AA+ K L+ + + +
Sbjct: 43 GTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS----KILSNLVYQYKGAGLSMG 98
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
+I G+ +EGP ++++D + ++ G
Sbjct: 99 TMICGYTRKEGPTIYYVDSDGTRLKGDIFCVG 130
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 65.6 bits (161), Expect = 4e-14
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ + G + D A+ + + LY+++ G ++ P L Y + PY +
Sbjct: 51 IGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL--YEKRFGPYYTEPV 108
Query: 61 IAGHDPEE-GPQLFFIDYL-ASLIEIPYITHG 90
IAG DP+ P + +D + ++ ++ G
Sbjct: 109 IAGLDPKTFKPFICSLDLIGCPMVTDDFVVSG 140
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 65.0 bits (159), Expect = 1e-13
Identities = 9/93 (9%), Positives = 14/93 (15%), Gaps = 7/93 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSR--SPYNCN 58
+A V + AAA
Sbjct: 44 IACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAA----TSGLVADARVLIDRARLE 99
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEI-PYITHG 90
I E + + I+ G
Sbjct: 100 AQIYRLTYGEEISIEMLAKKICDIKQAYTQHGG 132
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 64.5 bits (158), Expect = 1e-13
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSR--SPYNCN 58
+ G + D + +A+ ++Y++RN +S AA+ K LA + +
Sbjct: 43 GTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS----KLLANMVYQYKGMGLSMG 98
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
+I G D GP L+++D + I + G
Sbjct: 99 TMICGWDK-RGPGLYYVDSEGNRISGATFSVG 129
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 65.2 bits (159), Expect = 2e-13
Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSR--SPYNCN 58
+ G + D + ++ +L+++R +S AA+ K L+ + + +
Sbjct: 118 GTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS----KILSNLVYQYKGAGLSMG 173
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
+I G+ +EGP ++++D + ++ G
Sbjct: 174 TMICGYTRKEGPTIYYVDSDGTRLKGDIFCVG 205
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 63.4 bits (155), Expect = 3e-13
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
A G + DT + I NI+L+ + E +A ++ L +Y + ++
Sbjct: 43 CAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY---QGHIGAYLI 99
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
+AG D G LF I S Y++ G
Sbjct: 100 VAGVD-PTGSHLFSIHAHGSTDVGYYLSLG 128
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 61.8 bits (151), Expect = 1e-12
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
A++G + D A+ A ++L+ + AAA + +Y R +++
Sbjct: 43 CALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKY---REDLLAHLI 99
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
+AG D + LI P+ G
Sbjct: 100 VAGWDQ-REGGQVYGTMGGMLIRQPFTIGG 128
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 62.0 bits (151), Expect = 2e-12
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
A G + DT + I NI+L+ + E +A ++ L +Y + ++
Sbjct: 72 CAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY---QGHIGAYLI 128
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
+AG D G LF I S Y++ G
Sbjct: 129 VAGVD-PTGSHLFSIHAHGSTDVGYYLSLG 157
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 59.9 bits (146), Expect = 6e-12
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSR--SPYNCN 58
M G GD A I LY++R + + RA A + L S PY
Sbjct: 43 MTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA----TLTSNLLNSYRYFPYLVQ 98
Query: 59 MLIAGHDPEEGPQLFFIDYL-ASLIEIPYITHG 90
+LI G D EG ++ ID + ++ E + G
Sbjct: 99 LLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATG 130
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 59.6 bits (145), Expect = 1e-11
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
G + DT A ++L+ + G E R+ L Y + +++
Sbjct: 43 CCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY---QGHVGASLV 99
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
+ G D GPQL+ + S +P+ G
Sbjct: 100 VGGVD-LNGPQLYEVHPHGSYSRLPFTALG 128
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 58.4 bits (142), Expect = 2e-11
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
M + G GD ++ ++LY+++ + A A L+ L PY
Sbjct: 51 MTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA----TLLSNMLNQVKYMPYMVQ 106
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHG 90
+L+ G D P +F ID +E Y + G
Sbjct: 107 LLVGGID--TAPHVFSIDAAGGSVEDIYASTG 136
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 53.4 bits (128), Expect = 3e-09
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYL-RSRSPYNCNM 59
+ G + V+FA A ++ Y+ G L+ + L +
Sbjct: 100 TGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALP 159
Query: 60 LIAGHD-----PEEGPQLFFIDY--LASLIEIPYITHG 90
L+AG+D P+ ++ D ++ E Y G
Sbjct: 160 LLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVG 197
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 51.4 bits (123), Expect = 1e-08
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 8/98 (8%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYL-RSRSPYNCNM 59
+ G +G ++ A ++ Y+ G L+ A + L +
Sbjct: 43 AGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVP 102
Query: 60 LIAGHD-----PEEGPQLFFIDYLASLIE--IPYITHG 90
L+ G+D ++ D + E Y G
Sbjct: 103 LLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVG 140
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 50.7 bits (121), Expect = 3e-08
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYL-RSRSPYNCNM 59
+ G +G ++ A ++ Y+ G L+ A + L +
Sbjct: 108 AGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVP 167
Query: 60 LIAGHD-----PEEGPQLFFIDYLASLIE 83
L+ G+D ++ D + E
Sbjct: 168 LLVGYDLDADDESRAGRIVSYDVVGGRYE 196
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 45.0 bits (107), Expect = 2e-06
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAA--------YYTRKQLAEYLRSR 52
A++G + D E + + +++ + + E
Sbjct: 68 CAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMS 127
Query: 53 SPYNCNMLIAGHDPEEGPQLFFID 76
P+ +LIAGHD ++G QLF +
Sbjct: 128 RPFGVALLIAGHDADDGYQLFHAE 151
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 42.6 bits (101), Expect = 1e-05
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 1 MAVTGDSGDT---VQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
+TG + D+ VQ A + A N +K + GYE+ K++A+ +
Sbjct: 78 CVMTGMTADSRSQVQRARYEAAN---WKYKYGYEIPVDMLC----KRIADISQVYTQNAE 130
Query: 52 RSPYNCNMLIAGHDPEEGPQLFFID 76
P C M++ G D E+GPQ++ D
Sbjct: 131 MRPLGCCMILIGIDEEQGPQVYKCD 155
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 42.7 bits (101), Expect = 1e-05
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 1 MAVTG---DSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
MAV G D+ A A N ++ GY + + A ++A Y+ +
Sbjct: 75 MAVAGLLADARSLADIAREEASN---FRSNFGYNIPLKHLA----DRVAMYVHAYTLYSA 127
Query: 52 RSPYNCNMLIAGHDPEEGPQLFFID 76
P+ C+ ++ + +G QL+ ID
Sbjct: 128 VRPFGCSFMLGSYSVNDGAQLYMID 152
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 41.9 bits (99), Expect = 2e-05
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 16/85 (18%)
Query: 1 MAVTGDSGDT---VQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
+AV G + D + A A+N Y ++ ++L++ +
Sbjct: 74 VAVAGLTADAEILINTARIHAQN---YLKTYNEDIPVEILV----RRLSDIKQGYTQHGG 126
Query: 52 RSPYNCNMLIAGHDPEEGPQLFFID 76
P+ + + AG+D G QL+ +
Sbjct: 127 LRPFGVSFIYAGYDDRYGYQLYTSN 151
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 41.9 bits (99), Expect = 2e-05
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------SRSP 54
+V G + D + Q Y ++ + L + + + P
Sbjct: 74 CSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLV----TALCDIKQAYTQFGGKRP 129
Query: 55 YNCNMLIAGHDPEEGPQLFFID 76
+ ++L G D G QL+ D
Sbjct: 130 FGVSLLYIGWDKHYGFQLYQSD 151
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 41.8 bits (99), Expect = 3e-05
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 16/85 (18%)
Query: 1 MAVTGDSGDT---VQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
M V G D A+ A ++ + GY++ A K++A +
Sbjct: 72 MVVNGPIPDARNAALRAKAEAAE---FRYKYGYDMPCDVLA----KRMANLSQIYTQRAY 124
Query: 52 RSPYNCNMLIAGHDPEEGPQLFFID 76
P + D E GP ++ D
Sbjct: 125 MRPLGVILTFVSVDEELGPSIYKTD 149
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 40.3 bits (95), Expect = 8e-05
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 1 MAVTGDSGDT---VQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
MA G + D + A ++ +++ ++ + +A +
Sbjct: 71 MAFAGLTADARIVINRARVECQS---HRLTVEDPVTVEYIT----RYIASLKQRYTQSNG 123
Query: 52 RSPYNCNMLIAGHDPEEGPQLFFID 76
R P+ + LI G D + P+L+ D
Sbjct: 124 RRPFGISALIVGFDFDGTPRLYQTD 148
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 39.6 bits (92), Expect = 1e-04
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMR-NGYELSPRAAAYYTRKQLAEYLRSRS-PYNCN 58
A G + + + + +++ R+ A + L + PY
Sbjct: 62 FAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVE 121
Query: 59 MLIA---GHDPEEGPQLFFIDYLASLIEIPY 86
+ +A + PQL+ I Y S+++ +
Sbjct: 122 ICVAEVGRVGSPKAPQLYRITYDGSIVDEQH 152
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 39.1 bits (92), Expect = 2e-04
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 1 MAVTGDSGDT---VQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
+G D V + +A YK G + ++A+ ++
Sbjct: 73 AVYSGMGPDYRVLVDKSRKVAH--TSYKRIYGEYPPTKLLV----SEVAKIMQEATQSGG 126
Query: 52 RSPYNCNMLIAGHDPEEGPQLFFID 76
P+ ++LIAGHD G L+ +D
Sbjct: 127 VRPFGVSLLIAGHDEFNGFSLYQVD 151
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 38.7 bits (91), Expect = 3e-04
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 1 MAVTGDSGDT---VQFAEFIAKNIQLYKMRNGYE-----LSPRAAAY---YTRKQLAEYL 49
A++G D + A +N + ++ + + +
Sbjct: 76 CAMSGLIADAKTLIDKARVETQN---HWFTYNETMTVESVTQAVSNLALQFGEEDADPGA 132
Query: 50 RSRSPYNCNMLIAGHDPEEGPQLFFID 76
SR P+ +L G D E+GPQLF +D
Sbjct: 133 MSR-PFGVALLFGGVD-EKGPQLFHMD 157
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 38.3 bits (90), Expect = 3e-04
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------SRSP 54
+ +G D K Q Y + + +++A ++ P
Sbjct: 73 LVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLV----QRVASVMQEYTQSGGVRP 128
Query: 55 YNCNMLIAGHDPEEGPQLFFID 76
+ ++LI G + E P LF D
Sbjct: 129 FGVSLLICGWN-EGRPYLFQSD 149
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 38.4 bits (90), Expect = 4e-04
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------SRSP 54
+++ G + D + ++ + + +L+ A L + + P
Sbjct: 71 LSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAG----HLLCDKAQKNTQSYGGRP 126
Query: 55 YNCNMLIAGHDPEEGPQLFFID 76
Y +LI G+D + G L
Sbjct: 127 YGVGLLIIGYD-KSGAHLLEFQ 147
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 38.4 bits (90), Expect = 4e-04
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 1 MAVTGDSGDT---VQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
+G D V FA A+ K+ G ++ K++A+ ++
Sbjct: 76 AVTSGLVADARVLVDFARISAQQ---EKVTYGSLVNIENLV----KRVADQMQQYTQYGG 128
Query: 52 RSPYNCNMLIAGHDPEEGPQLFFID 76
PY +++ AG D + GP+LF D
Sbjct: 129 VRPYGVSLIFAGID-QIGPRLFDCD 152
Score = 38.1 bits (89), Expect = 5e-04
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 1 MAVTGDSGDT---VQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
A +G D + A A+ Y++ G E+S A K++ + +
Sbjct: 80 AATSGLVADARVLIDRARLEAQI---YRLTYGEEISIEMLA----KKICDIKQAYTQHGG 132
Query: 52 RSPYNCNMLIAGHDPEEGPQLFFID 76
P+ ++LIAG D + +LF D
Sbjct: 133 VRPFGVSLLIAGID-KNEARLFETD 156
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 38.0 bits (89), Expect = 5e-04
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 17/85 (20%)
Query: 1 MAVTG---DSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
+G D V A + +K + A A +L +Y++ S
Sbjct: 72 CVYSGLIPDGRHLVNRGREEAAS---FKKLYKTPIPIPAFA----DRLGQYVQAHTLYNS 124
Query: 52 RSPYNCNMLIAGHDPEEGPQLFFID 76
P+ + + G D + G L+ ++
Sbjct: 125 VRPFGVSTIFGGVD-KNGAHLYMLE 148
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 38.1 bits (89), Expect = 5e-04
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 17/85 (20%)
Query: 1 MAVTG---DSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
+G D V A + +K + A A +L +Y++ S
Sbjct: 76 CVYSGLIPDGRHLVNRGREEAAS---FKKLYKTPIPIPAFA----DRLGQYVQAHTLYNS 128
Query: 52 RSPYNCNMLIAGHDPEEGPQLFFID 76
P+ + + G D + G L+ ++
Sbjct: 129 VRPFGVSTIFGGVD-KNGAHLYMLE 152
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 37.3 bits (87), Expect = 8e-04
Identities = 14/86 (16%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 1 MAVTGDSGDT---VQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
++ +G + D+ ++ A A++ +++ ++ + +A +
Sbjct: 71 LSFSGLNADSRILIEKARVEAQS---HRLTLEDPVTVEYLT----RYVAGVQQRYTQSGG 123
Query: 52 RSPYNCNMLIAGHDPEE-GPQLFFID 76
P+ + LIAG DP + P+L+ +
Sbjct: 124 VRPFGVSTLIAGFDPRDDEPKLYQTE 149
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 36.9 bits (86), Expect = 0.001
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 18/85 (21%)
Query: 1 MAVTGDSGDT---VQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------S 51
A +G D + A A+ ++ ++ + A K++ ++ +
Sbjct: 76 AATSGLVADARVLIDRARIEAQI---NRLTYDIPITVKELA----KKICDFKQQYTQYGG 128
Query: 52 RSPYNCNMLIAGHDPEEGPQLFFID 76
P+ ++LIAG + E P+L+ D
Sbjct: 129 VRPFGVSLLIAGVN--EVPKLYETD 151
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR------SRSP 54
+++ G + D F+ + + L + + R P
Sbjct: 72 ISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLV----SLIGSKTQIPTQRYGRRP 127
Query: 55 YNCNMLIAGHDPEEGPQLFFID 76
Y +LIAG+D + GP +F
Sbjct: 128 YGVGLLIAGYD-DMGPHIFQTC 148
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 35.3 bits (81), Expect = 0.005
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 13/92 (14%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPR------AAAYYTRKQLAEYLRSRSP 54
A G + + + + + GY R A Y + + P
Sbjct: 62 FAAAGKFNE----FDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKP 117
Query: 55 YNCNMLIAGHDP---EEGPQLFFIDYLASLIE 83
Y + +A + P+L+ I Y S+ +
Sbjct: 118 YEVELCVAEVAHYGETKRPELYRITYDGSIAD 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.18
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 36 AAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLF--FIDYLASLIEIPYITHGYPG 93
A+++ QL E P A +P +L F+ Y++SL+E P +
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE-PSKVGQFDQ 82
Query: 94 IVTLSIMGEYHRS 106
++ L + E+
Sbjct: 83 VLNLCL-TEFENC 94
Score = 26.6 bits (58), Expect = 5.7
Identities = 13/67 (19%), Positives = 17/67 (25%), Gaps = 41/67 (61%)
Query: 37 AAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVT 96
AA+ E L+S+ + AGH SL
Sbjct: 1742 AAF-------EDLKSKGLIPADATFAGH---------------SL--------------- 1764
Query: 97 LSIMGEY 103
GEY
Sbjct: 1765 ----GEY 1767
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 29.2 bits (66), Expect = 0.57
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 40 YTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGI 94
R ++A +R + +L+ HD L +DYL+ +I + Y G PG+
Sbjct: 262 RQRLKVARVIRRLANEGKAVLVVEHD------LAVLDYLSDVIHVVY---GEPGV 307
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 27.3 bits (61), Expect = 2.4
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 40 YTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVT 96
R A +R S ++L+ HD L +DYL+ +I + Y G GI +
Sbjct: 192 RQRLNAARAIRRLSEEGKSVLVVEHD------LAVLDYLSDIIHVVYGEPGVYGIFS 242
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 25.4 bits (56), Expect = 8.4
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 35 RAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEGPQL 72
A + K+L E ++ P + GHD E+
Sbjct: 214 PELALSSIKRLKEVVKKEKPI----IFFGHDIEQEKSC 247
>2i3o_A Gamma-glutamyltransferase related protein; structural genomics,
PSI, protein structure initiative; 2.03A {Thermoplasma
acidophilum} SCOP: d.153.1.6
Length = 516
Score = 25.5 bits (57), Expect = 8.8
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 27 RNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNMLIAGHDPEEG 69
G+ ++ + R A + ++ + G P G
Sbjct: 140 SAGFPITQNYSDSIARS--APVIGQYRGWSSIFMPNGSVPVAG 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.399
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,574,977
Number of extensions: 149549
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 62
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)