RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12630
(160 letters)
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 81.0 bits (199), Expect = 3e-20
Identities = 62/155 (40%), Positives = 97/155 (62%), Gaps = 17/155 (10%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
M+ G++GDTVQFAE+I NIQLY +R YELSP+A + + R++LA+ +RSR PY N+L
Sbjct: 44 MSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVL 103
Query: 61 IAGHDPEE-GPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRS------------- 106
I G+D ++ P+L+ IDYL + +E+PY HGY G T S++ ++R
Sbjct: 104 IGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKL 163
Query: 107 ---EVQKRLIINVPNFKVTMVSKDGIKHLPPIKAK 138
E++KR+ ++ V +V KDGI+ + +A+
Sbjct: 164 CVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQAQ 198
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 63.6 bits (154), Expect = 1e-13
Identities = 23/177 (12%), Positives = 55/177 (31%), Gaps = 31/177 (17%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRN-----GYELSPRAAAYYTRKQLAEYLRSRSPY 55
+ ++GD D + + N L P Y + + +P
Sbjct: 51 VGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPL 110
Query: 56 NCNMLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSE-------- 107
+++AG L +++ L P + G+ + ++ + E
Sbjct: 111 WNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTV 170
Query: 108 -------------VQKRLIINVPNFKVTMVSKD-GIKHLPPIKAKN----IPEENKG 146
+ R + NF + ++ K+ G+ ++ +N ++ KG
Sbjct: 171 QVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKG 227
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 62.1 bits (150), Expect = 4e-13
Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 20/148 (13%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+G + DT A+ + +++LY + G + AA+ + ++ ++
Sbjct: 52 CCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAASVFKEL----CYENKDNLTAGII 107
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
+AG+D + +++ I S+ ++PY G + R
Sbjct: 108 VAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHS 167
Query: 106 -SEVQKRLIINVPNFKVTMVSKDGIKHL 132
S+ K + ++ +++ G++ L
Sbjct: 168 LSQAIKWDGSSGGVIRMVVLTAAGVERL 195
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 61.4 bits (148), Expect = 6e-13
Identities = 76/159 (47%), Positives = 107/159 (67%), Gaps = 19/159 (11%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ G++GDTVQFAE+I KN+QLYKMRNGYELSP AAA +TR+ LA+ LRSR+PY+ N+L
Sbjct: 44 LLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLL 103
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
+AG+D EGP L+++DYLA+L + P+ HGY +TLSI+ Y+
Sbjct: 104 LAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKC 163
Query: 106 -SEVQKRLIINVPNFKVTMVSKDGIKHLPPIKAKNIPEE 143
E+QKR I+N+P F V ++ K+GI L I + P++
Sbjct: 164 LEELQKRFILNLPTFSVRIIDKNGIHDLDNI---SFPKQ 199
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 59.7 bits (144), Expect = 4e-12
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 2/109 (1%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
MAV G D A+ + ++ GY + + A + Y + P+ C+
Sbjct: 75 MAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCS 134
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSE 107
++ + +G QL+ ID G + + + E
Sbjct: 135 FMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKE 183
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 59.0 bits (142), Expect = 8e-12
Identities = 20/158 (12%), Positives = 40/158 (25%), Gaps = 24/158 (15%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCN 58
M V G D A ++ + GY++ A Y + P
Sbjct: 72 MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVI 131
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSEVQKRLI----- 113
+ D E GP ++ D + G + + + + +
Sbjct: 132 LTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWE 191
Query: 114 -----------------INVPNFKVTMVSKDGIKHLPP 134
+ + +V + +KD L
Sbjct: 192 KVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSA 229
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 58.2 bits (140), Expect = 1e-11
Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 20/159 (12%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
G + DT + I+ N++L+ + G A ++ L Y ++
Sbjct: 43 CCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRG---YIGAALV 99
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
+ G D GP L+ I S ++PY+T G + +++ + R
Sbjct: 100 LGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEA 158
Query: 106 -SEVQKRLIINVPNFKVTMVSKDGIKHLPPIKAKNIPEE 143
+ + + N + ++SK+ + L P N
Sbjct: 159 IAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGT 197
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 55.0 bits (132), Expect = 2e-10
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 10/115 (8%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAA--------YYTRKQLAEYLRSR 52
A++G D + Q + ++ + + + SR
Sbjct: 69 CAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSR 128
Query: 53 SPYNCNMLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSE 107
P+ +L G D E+GPQLF +D + ++ G S + E +
Sbjct: 129 -PFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKS 181
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 54.3 bits (130), Expect = 2e-10
Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 19/147 (12%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+G + DT A+ + + + + AA ++ Y ++
Sbjct: 43 CCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE---DLMAGII 99
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
IAG DP+EG Q++ + ++ + G + +R
Sbjct: 100 IAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANA 159
Query: 106 -SEVQKRLIINVPNFKVTMVSKDGIKH 131
+ +R + ++ +++ G++
Sbjct: 160 LALAMERDGSSGGVIRLAAIAESGVER 186
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 54.3 bits (130), Expect = 3e-10
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 2/109 (1%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRS--RSPYNCN 58
MA G + D Q +++ ++ Y Y +S R P+ +
Sbjct: 70 MAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGIS 129
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSE 107
LI G D + P+L+ D + G + + + E
Sbjct: 130 ALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDE 178
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 53.1 bits (127), Expect = 9e-10
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 2/111 (1%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCN 58
+TG + D+ + +K + GYE+ Y + P C
Sbjct: 77 CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCC 136
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSEVQ 109
M++ G D E+GPQ++ D G + S + + + +
Sbjct: 137 MILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 187
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 52.0 bits (124), Expect = 3e-09
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQL-YKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNC 57
+G D + K YK G + K + E +S P+
Sbjct: 73 AVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGV 132
Query: 58 NMLIAGHDPEEGPQLFFIDYLASLIEIPYITHGY 91
++LIAGHD G L+ +D S G
Sbjct: 133 SLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGK 166
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 51.6 bits (123), Expect = 4e-09
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 3/93 (3%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRS--RSPYNCN 58
+G D + +K + A A + + + P+ +
Sbjct: 72 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVS 131
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGY 91
+ G D G L+ ++ S G
Sbjct: 132 TIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGK 163
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 51.2 bits (122), Expect = 5e-09
Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRS--RSPYNCN 58
+++ G + D F+ + + L + + R PY
Sbjct: 69 ISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVG 128
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSE 107
+LIAG+D + GP +F A+ + ++ G + + +
Sbjct: 129 LLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEF 176
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 50.7 bits (120), Expect = 6e-09
Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 27/155 (17%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ +G GD + + I +++YK N ++ A A L Y R PY +
Sbjct: 52 IGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTIL--YSRRFFPYYVYNI 109
Query: 61 IAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR--------------- 105
I G D E ++ D + S + G + ++
Sbjct: 110 IGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLD 169
Query: 106 ----------SEVQKRLIINVPNFKVTMVSKDGIK 130
+R + ++ +V+K+GI+
Sbjct: 170 RAMRLVKDVFISAAERDVYTGDALRICIVTKEGIR 204
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 50.1 bits (119), Expect = 1e-08
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 2/93 (2%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLR--SRSPYNCN 58
+V G + D + Q Y ++ + Y + + P+ +
Sbjct: 73 CSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVS 132
Query: 59 MLIAGHDPEEGPQLFFIDYLASLIEIPYITHGY 91
+L G D G QL+ D + G
Sbjct: 133 LLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGN 165
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 49.7 bits (118), Expect = 2e-08
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 24/169 (14%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRS--PYNCN 58
++ +G + D+ E Q +++ ++ Y Y +S P+ +
Sbjct: 71 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVS 130
Query: 59 MLIAGHDPEE-GPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSE---------- 107
LIAG DP + P+L+ + T G + + + +
Sbjct: 131 TLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECV 190
Query: 108 ------VQKRLIINVPNFKVTMVSKD-GIKHLPP--IKA--KNIPEENK 145
+ + + N ++T+V D I L I I +E +
Sbjct: 191 KLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEKQ 239
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 48.1 bits (114), Expect = 6e-08
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 5/98 (5%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSP--RAAAYYTRKQLAEYLRSRSPYNCN 58
A G + + + A Y + + PY
Sbjct: 54 FAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVE 113
Query: 59 MLIAGHDP---EEGPQLFFIDYLASLIEIPYITHGYPG 93
+ +A + PQL+ I Y S+++ +
Sbjct: 114 ICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGT 151
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 46.2 bits (109), Expect = 3e-07
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 8/115 (6%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAA--------YYTRKQLAEYLRSR 52
A++G + D E + + +++ + + E
Sbjct: 68 CAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMS 127
Query: 53 SPYNCNMLIAGHDPEEGPQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHRSE 107
P+ +LIAGHD ++G QLF + + G + + S
Sbjct: 128 RPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSS 182
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 44.0 bits (103), Expect = 2e-06
Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 20/148 (13%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ +TG + D E LYK++ + P L E PY +
Sbjct: 50 LGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYER--RFGPYFVGPV 107
Query: 61 IAGHDPEEG-PQLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR-------------- 105
+AG + + G P + D + + E L M E
Sbjct: 108 VAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETIS 167
Query: 106 ---SEVQKRLIINVPNFKVTMVSKDGIK 130
R ++ V ++ KD +
Sbjct: 168 QALLNAADRDALSGWGAVVYIIKKDEVV 195
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 42.1 bits (98), Expect = 7e-06
Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 20/148 (13%)
Query: 1 MAVTGDSGDTVQFAEFIAKNIQLYKMRNGYELSPRAAAYYTRKQLAEYLRSRSPYNCNML 60
+ + G + D A+ + + LY+++ G ++ P L Y + PY +
Sbjct: 50 IGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL--YEKRFGPYYTEPV 107
Query: 61 IAGHDPEEGP-QLFFIDYLASLIEIPYITHGYPGIVTLSIMGEYHR-------------- 105
IAG DP+ + +D + + + M E
Sbjct: 108 IAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETIS 167
Query: 106 ---SEVQKRLIINVPNFKVTMVSKDGIK 130
R ++ V ++ KD I
Sbjct: 168 QAMLNAVDRDAVSGMGVIVHIIEKDKIT 195
>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 333
Score = 25.9 bits (55), Expect = 2.9
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 14 AEFIAKNIQLYKMRNGYELSPRAAAYYTRKQ---LAEYLRSRS-PY 55
AE + + + N + A Y Q ++L PY
Sbjct: 17 AERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPY 62
>d1q5ya_ d.58.18.4 (A:) Nickel responsive regulator NikR, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 84
Score = 23.8 bits (52), Expect = 5.7
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 92 PGIVTLSIMGEYHRSEVQKRLI 113
G LS + E+ + ++ R++
Sbjct: 2 QGFAVLSYVYEHEKRDLASRIV 23
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 24.2 bits (52), Expect = 9.4
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 89 HGYPGIVTLSIMGEYHRSEVQKRLIINVPNFKVTMVSKDGIKHLPPIKAKNIPE--ENKG 146
H + LSI + + +++ VP + + ++ P K K
Sbjct: 342 HTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPT--HPVYNIGPDKVIQATTYFLQKP 399
Query: 147 IP 148
+P
Sbjct: 400 VP 401
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.399
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 625,518
Number of extensions: 28516
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 24
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)