BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12631
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R8U|A Chain A, Structure Of Fragment Of Human End-Binding Protein 1
(Eb1) Containing The N-Terminal Domain At 1.35 A
Resolution
pdb|2R8U|B Chain B, Structure Of Fragment Of Human End-Binding Protein 1
(Eb1) Containing The N-Terminal Domain At 1.35 A
Resolution
Length = 268
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 61/80 (76%), Gaps = 4/80 (5%)
Query: 1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
MA+NVYST+VTS+NLSRHDML W+N++LQ + KIE+LCSGAAYCQFMDMLFPG L
Sbjct: 1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60
Query: 58 IFILRNLLHTFVLHL-ILKA 76
+ L H ++ + IL+A
Sbjct: 61 VKFQAKLEHEYIQNFKILQA 80
>pdb|3CO1|A Chain A, Crystal Structure Of Microtubule Binding Domain Of Human
Eb3
Length = 132
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 50/54 (92%)
Query: 1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
MA+NVYST+VTSENLSRHDML WVND+L ++ KIE+LCSGAAYCQFMDMLFPG
Sbjct: 3 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPG 56
>pdb|1WYO|A Chain A, Solution Structure Of The Ch Domain Of Human
Microtubule- Associated Protein RpEB FAMILY MEMBER 3
Length = 159
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 50/54 (92%)
Query: 1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
MA+NVYST+VTSENLSRHDML WVND+L ++ KIE+LCSGAAYCQFMDMLFPG
Sbjct: 8 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPG 61
>pdb|1PA7|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
pdb|1UEG|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
Length = 130
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 61/80 (76%), Gaps = 4/80 (5%)
Query: 1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
MA+NVYST+VTS+NLSRHDML W+N++LQ + KIE+LCSGAAYCQFMDMLFPG L
Sbjct: 1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60
Query: 58 IFILRNLLHTFVLHL-ILKA 76
+ L H ++ + IL+A
Sbjct: 61 VKFQAKLEHEYIQNFKILQA 80
>pdb|1VKA|A Chain A, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
pdb|1VKA|B Chain B, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
Length = 153
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 60/79 (75%), Gaps = 4/79 (5%)
Query: 2 AINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYSI 58
A+NVYST+VTS+NLSRHDML W+N++LQ + KIE+LCSGAAYCQFMDMLFPG L +
Sbjct: 15 AVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKV 74
Query: 59 FILRNLLHTFVLHL-ILKA 76
L H ++ + IL+A
Sbjct: 75 KFQAKLEHEYIQNFKILQA 93
>pdb|2QJZ|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
pdb|2QJZ|B Chain B, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 123
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 12 SENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYSIFILRNLLHTF 68
S+NLSRHD L W+N++LQ + KIE+LCSGAAYCQF D LFPG L + L H +
Sbjct: 2 SDNLSRHDXLAWINESLQLNLTKIEQLCSGAAYCQFXDXLFPGSIALKKVKFQAKLEHEY 61
Query: 69 VLHL-ILKA 76
+ + IL+A
Sbjct: 62 IQNFKILQA 70
>pdb|1V5K|A Chain A, Solution Structure Of The Ch Domain From Mouse Eb-1
Length = 115
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 12 SENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYSIFILRNLLHTF 68
S RHDML W+N++LQ + KIE+LCSGAAYCQFMDMLFPG L + L H +
Sbjct: 5 SSGQRRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEY 64
Query: 69 VLHL-ILKA 76
+ + IL+A
Sbjct: 65 IQNFKILQA 73
>pdb|2QJX|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 127
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 16 SRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGL 55
SR ++L W+N L ++ KIEE +GAAYCQ D ++ L
Sbjct: 11 SRTELLTWLNGLLNLNYKKIEECGTGAAYCQIXDSIYGDL 50
>pdb|1V7R|A Chain A, Structure Of Nucleotide Triphosphate Pyrophosphatase From
Pyrococcus Horikoshii Ot3
pdb|2DVN|A Chain A, Structure Of Ph1917 Protein With The Complex Of Imp From
Pyrococcus Horikoshii
pdb|2DVN|B Chain B, Structure Of Ph1917 Protein With The Complex Of Imp From
Pyrococcus Horikoshii
pdb|2DVO|A Chain A, Structure Of Ph1917 Protein With The Complex Of Itp From
Pyrococcus Horikoshii
pdb|2DVP|A Chain A, Structure Of Ntpase From Pyroccous Horikoshii
pdb|2ZTI|A Chain A, Structures Of Dimeric Nonstandard Nucleotide Triphosphate
Pyrophosphatase From Pyrococcus Horikoshii Ot3:
Functional Significance Of Interprotomer Conformational
Changes
Length = 186
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 33 GKIEELCSGAAYCQFMDML--FPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGY 90
GK+ E F++ L FPG+YS ++ R T L ILK + +++RRA
Sbjct: 55 GKVPEPFMIEDSGLFIESLKGFPGVYSSYVYR----TIGLEGILKLMEGAEDRRAYFKSV 110
Query: 91 LGIW---TAWHFVAVIYHRI 107
+G + A+ F V + RI
Sbjct: 111 IGFYIDGKAYKFSGVTWGRI 130
>pdb|2E5X|A Chain A, Structure Of Nucleotide Triphosphate Pyrophosphatase From
Pyrococcus Horikoshii Ot3
Length = 186
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 33 GKIEELCSGAAYCQFMDML--FPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGY 90
GK+ E F++ L FPG+YS ++ R T L ILK + +++RRA
Sbjct: 55 GKVPEPFMIEDSGLFIESLKGFPGVYSSYVYR----TIGLEGILKLMEGAEDRRAYFKSV 110
Query: 91 LGIW---TAWHFVAVIYHRI 107
+G + A+ F V + RI
Sbjct: 111 IGFYIDGKAYKFSGVTWGRI 130
>pdb|3V0A|B Chain B, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|B Chain B, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1196
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 4 NVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYS 57
N+ S N+ NL+ + L +++ Q + ++ + AA C F ++P S
Sbjct: 716 NISSDNLALMNLTTTNTLRDISNESQIAMNNVDSFLNNAAICVFESNIYPKFIS 769
>pdb|4ABO|I Chain I, Mal3 Ch Domain Homology Model And Mammalian Tubulin
(2xrp) Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 145
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 16 SRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLF 52
SR ++L W+N +IE+ G A Q D ++
Sbjct: 7 SRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIY 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,421,419
Number of Sequences: 62578
Number of extensions: 138767
Number of successful extensions: 271
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 12
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)