RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12631
         (185 letters)



>gnl|CDD|227542 COG5217, BIM1, Microtubule-binding protein involved in cell cycle
          control [Cell division and chromosome partitioning /
          Cytoskeleton].
          Length = 342

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 16 SRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLF 52
          SR ++L W N  ++    +IE+   G A  Q  D ++
Sbjct: 8  SREELLFWENVVVRLDLQRIEDCGEGFAMQQIHDSIY 44


>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain.  The CH domain is
          found in both cytoskeletal proteins and signal
          transduction proteins. The CH domain is involved in
          actin binding in some members of the family. However in
          calponins there is evidence that the CH domain is not
          involved in its actin binding activity. Most member
          proteins have from two to four copies of the CH domain,
          however some proteins such as calponin have only a
          single copy.
          Length = 104

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 17 RHDMLHWVNDTLQSSFGKI-----EELCSGAAYCQFMDMLFPGL 55
             +L W+N+ L    G       E+L  G A C  ++ L PGL
Sbjct: 1  EKALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGL 44


>gnl|CDD|184834 PRK14821, PRK14821, putative deoxyribonucleotide triphosphate
           pyrophosphatase; Provisional.
          Length = 184

 Score = 28.0 bits (63), Expect = 2.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 47  FMDML--FPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRA 85
           F++ L  FPG YS F+ +    T     ILK  +  +NRRA
Sbjct: 69  FIEALNGFPGPYSAFVYK----TLGNEGILKLLEGEENRRA 105


>gnl|CDD|214479 smart00033, CH, Calponin homology domain.  Actin binding domains
          present in duplicate at the N-termini of spectrin-like
          proteins (including dystrophin, alpha-actinin). These
          domains cross-link actin filaments into bundles and
          networks. A calponin homology domain is predicted in
          yeasst Cdc24p.
          Length = 101

 Score = 26.5 bits (59), Expect = 4.5
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 5/38 (13%)

Query: 23 WVNDTLQSSFGKIEE-----LCSGAAYCQFMDMLFPGL 55
          WVN  L              L  G A C  ++ L PGL
Sbjct: 6  WVNSLLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGL 43


>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
           ribosomal structure and biogenesis].
          Length = 363

 Score = 27.2 bits (61), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 165 DNRLGYTVESLSVFLDGGKL 184
           D+R+  T+  L   ++GGKL
Sbjct: 322 DHRINLTLYKLDEVMEGGKL 341


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0727    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,777,369
Number of extensions: 940310
Number of successful extensions: 992
Number of sequences better than 10.0: 1
Number of HSP's gapped: 987
Number of HSP's successfully gapped: 21
Length of query: 185
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 94
Effective length of database: 6,901,388
Effective search space: 648730472
Effective search space used: 648730472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.4 bits)