RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12631
         (185 letters)



>2r8u_A Microtubule-associated protein RP/EB family member 1;
          cytoskeleton, acetylation, cell cycle, cell division,
          cytoplasm, mitosis, phosphorylation; 1.35A {Homo
          sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A
          2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
          Length = 268

 Score =  108 bits (271), Expect = 2e-29
 Identities = 42/54 (77%), Positives = 50/54 (92%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
          MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG
Sbjct: 1  MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPG 54


>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member
          3; CH domain, microtubule-binding, structural genomics,
          NPPSFA; NMR {Homo sapiens}
          Length = 159

 Score =  101 bits (253), Expect = 6e-28
 Identities = 44/54 (81%), Positives = 50/54 (92%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
          MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG
Sbjct: 8  MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPG 61


>4abo_I MAL3, microtubule integrity protein MAL3; structural protein,
          cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A
          {Schizosaccharomyces pombe}
          Length = 145

 Score = 82.8 bits (204), Expect = 9e-21
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 11 TSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGL 55
             + SR ++L W+N        +IE+   G A  Q  D ++  +
Sbjct: 2  AMGSESRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQDI 46


>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin
          homology domain, microtubule plus END, +TIP, protein
          binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB:
          1pa7_A 1ueg_A 3co1_A 1v5k_A
          Length = 123

 Score = 78.8 bits (194), Expect = 1e-19
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 12 SENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
          S+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG
Sbjct: 2  SDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPG 44


>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A
          {Saccharomyces cerevisiae}
          Length = 127

 Score = 74.2 bits (182), Expect = 1e-17
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 7  STNVTS-ENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFI 60
           +++++    SR ++L W+N  L  ++ KIEE  +GAAYCQ MD ++  L    +
Sbjct: 1  GSHMSAGIGESRTELLTWLNGLLNLNYKKIEECGTGAAYCQIMDSIYGDLPMNRV 55


>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken
          structural genomics/proteomics initiative, RSGI,
          protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB:
          2d85_A
          Length = 124

 Score = 28.8 bits (64), Expect = 0.48
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 19 DMLHWVNDTLQ--------SSFGKIEELCSGAAYCQFMDMLFPG 54
           +++WVN TL          SF K + + S  A    +D + PG
Sbjct: 11 IIVNWVNRTLSEAGKSTSIQSF-KDKTISSSLAVVDLIDAIQPG 53


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.5 bits (63), Expect = 1.6
 Identities = 16/103 (15%), Positives = 25/103 (24%), Gaps = 37/103 (35%)

Query: 21  LHWVNDTLQSSFGKI-----------------EELCSGAAYCQFMDMLF-PGLYSIF--I 60
             ++   LQ  F KI                  EL     +  ++  L  P     F  +
Sbjct: 26  SFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV--GKFLGYVSSLVEPSKVGQFDQV 83

Query: 61  LRNLL-------------HTFVLHLILKAQQDSKNRRA--KGY 88
           L   L             H     L+ +        +   K Y
Sbjct: 84  LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,959,294
Number of extensions: 170232
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 12
Length of query: 185
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,244,745
Effective search space: 411740265
Effective search space used: 411740265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.0 bits)