RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12631
         (185 letters)



>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
          N-terminal microtubule binding domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 120

 Score = 85.2 bits (211), Expect = 2e-22
 Identities = 32/42 (76%), Positives = 38/42 (90%)

Query: 13 ENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
          +NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG
Sbjct: 1  DNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPG 42


>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 124

 Score = 24.6 bits (53), Expect = 5.0
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 9/51 (17%)

Query: 13 ENLSRHDMLHWVNDTLQ--------SSFGKIEELCSGAAYCQFMDMLFPGL 55
           + +   +++WVN TL          SF K + + S  A    +D + PG 
Sbjct: 5  SSGNDDIIVNWVNRTLSEAGKSTSIQSF-KDKTISSSLAVVDLIDAIQPGC 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 729,777
Number of extensions: 33200
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 8
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.2 bits)