Query psy12632
Match_columns 395
No_of_seqs 196 out of 1657
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 15:36:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 100.0 5.6E-64 1.9E-68 505.3 18.9 273 8-395 123-405 (405)
2 1zvd_A SMAD ubiquitination reg 100.0 2.4E-63 8.1E-68 498.5 22.0 270 9-394 101-379 (380)
3 1c4z_A E6AP, ubiquitin-protein 100.0 2.3E-63 7.7E-68 495.1 17.2 263 19-395 91-358 (358)
4 1nd7_A WW domain-containing pr 100.0 4.3E-62 1.5E-66 488.7 23.1 266 10-390 101-373 (374)
5 2oni_A E3 ubiquitin-protein li 100.0 1.2E-61 4.1E-66 487.7 20.8 259 15-389 127-392 (392)
6 3olm_A E3 ubiquitin-protein li 100.0 1.1E-61 3.9E-66 492.8 20.5 269 10-394 152-428 (429)
7 3pt3_A E3 ubiquitin-protein li 100.0 8.7E-42 3E-46 287.1 8.2 117 279-395 2-118 (118)
8 3h1d_A E3 ubiquitin-protein li 100.0 1.4E-33 4.9E-38 284.0 11.0 163 69-250 234-404 (405)
9 1zvd_A SMAD ubiquitination reg 100.0 1.8E-33 6.2E-38 281.9 11.1 161 69-248 210-379 (380)
10 1c4z_A E6AP, ubiquitin-protein 100.0 6.3E-33 2.2E-37 275.9 10.0 159 71-248 195-357 (358)
11 1nd7_A WW domain-containing pr 100.0 2.4E-32 8.2E-37 273.3 12.4 157 69-244 210-373 (374)
12 3olm_A E3 ubiquitin-protein li 100.0 2E-32 6.9E-37 278.0 11.7 161 68-247 259-427 (429)
13 2oni_A E3 ubiquitin-protein li 100.0 4E-32 1.4E-36 273.1 8.6 154 72-243 232-392 (392)
14 3pt3_A E3 ubiquitin-protein li 100.0 1.4E-30 5E-35 218.8 5.6 115 122-248 3-117 (118)
15 2diu_A KIAA0430 protein; struc 24.8 60 0.002 25.4 3.4 33 357-389 4-36 (96)
16 1l6x_B Minimized B-domain of p 21.9 79 0.0027 19.8 2.8 21 307-327 6-28 (34)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=5.6e-64 Score=505.34 Aligned_cols=273 Identities=26% Similarity=0.483 Sum_probs=231.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhHHHHHHHhcCcccCCCCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHhhccccHHH
Q psy12632 8 SASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTS 87 (395)
Q Consensus 8 ~p~~~~~~~~~~l~~f~~~G~lig~al~~~~~~~~~f~~~~~k~llg~~~~~~DL~~~D~~~~~sl~~l~~~~~~k~i~~ 87 (395)
.|++.+..+++++++|+|+|++||+||++|.++|++|+++|||+|+|.+++++||+++||+++++|.+|+.++..
T Consensus 123 ~~np~s~~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~~~----- 197 (405)
T 3h1d_A 123 TINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVS----- 197 (405)
T ss_dssp EECCC-----CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSCGG-----
T ss_pred eeCCccccChhHHHHHHHHhHHHHHHHhCCCccCCCccHHHHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCChh-----
Confidence 345555667899999999999999999999999999999999999999999999999999999999999743211
Q ss_pred HHHHHHhccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCCcccccchhhHHHHHHHHHH
Q psy12632 88 LFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAE 167 (395)
Q Consensus 88 ~~~af~~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g~~~~vt~~n~~e~i~~~~~ 167 (395)
+++++..|+++....+....+||+|||+++.||.+|+.+|++.+++
T Consensus 198 ----------------------------------~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~ 243 (405)
T 3h1d_A 198 ----------------------------------TLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQ 243 (405)
T ss_dssp ----------------------------------GSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHH
T ss_pred ----------------------------------hhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHHHHHH
Confidence 1122234443322222235679999999999999999999999999
Q ss_pred HhhchhHHHHHHHhhhcCCCCCCCCCCCCCCCCeeEecCCCCCCCCCCcccceeeecCCCCCHHHHHHHHHHHHHcCchh
Q psy12632 168 TRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFG 247 (395)
Q Consensus 168 ~~l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l~~~~i~~~~~~~LP~ahTCfn~L~LP~Yss~e~l~ekL~~AI~~~~~g 247 (395)
+++.++.++|..
T Consensus 244 ~~l~~~v~~q~~-------------------------------------------------------------------- 255 (405)
T 3h1d_A 244 MRMTGAIRKQLA-------------------------------------------------------------------- 255 (405)
T ss_dssp HHHTGGGHHHHH--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 999999999988
Q ss_pred hHHhhhcccccCchhhcCCCHHHHHhhcCCCCCCCHHHHHhcccccCCCCCCchHHHHHHHHHHHHHHhCCHHHHHhhhh
Q psy12632 248 FAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVY 327 (395)
Q Consensus 248 fa~~~Gf~~v~p~~~l~~f~~~el~~l~~G~~~i~~~~l~~~~~~~~~~~~~s~~~~~~i~~fw~v~~~~~~~~~~~~L~ 327 (395)
||++||++|+|..+|++|+|+||+.++||.++||+++|+++|.|. +|+.+| ++|+|||+++++||+++|++||+
T Consensus 256 -aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~-gy~~~~----~~i~~FW~v~~~~s~eer~~fL~ 329 (405)
T 3h1d_A 256 -AFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYH-KYQSNS----IQIQWFWRALRSFDQADRAKFLQ 329 (405)
T ss_dssp -HHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEE-SSCTTC----HHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -HHHHHHHHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCccc-CCCCCC----chHhhHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 477776 47999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCC------CeeEecC--CCCCCCcccccccccccCCCCCCHHHHHHHHHHHHhc--CCcccC
Q psy12632 328 FWTGSPALPASEDGFQPM------PSVTIRP--ADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKT--KNFGFV 395 (395)
Q Consensus 328 F~TG~~~~P~~~~g~~~~------~~i~~~~--~~~~~LP~a~TC~~~L~lP~Y~s~e~l~~kL~~ai~~--~~fg~~ 395 (395)
|||||+|+|+ +||+.+ ++++|.+ .++++||+||||||+|+||+|+|+|+||+||++||++ +|||||
T Consensus 330 FvTGs~rlP~--~Gf~~L~~~~~~~~f~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI~e~~~GFgla 405 (405)
T 3h1d_A 330 FVTGTSKVPL--QGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGLA 405 (405)
T ss_dssp HHHSSSCCCT--TCGGGCBCSSSBCCEEEEEECSCTTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHHHC--------
T ss_pred HHcCCCCCCC--CccccccccCCCceEEEeeCCCCCCCCccceeccCEeECCCCCCHHHHHHHHHHHHHhCCCCcCCC
Confidence 9999999999 588776 3677753 4678999999999999999999999999999999995 799986
No 2
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-63 Score=498.50 Aligned_cols=270 Identities=27% Similarity=0.439 Sum_probs=235.9
Q ss_pred CCCCCCCCHHHHHHHHHHhHHHHHHHhcCcccCCCCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHhhccccHHHH
Q psy12632 9 ASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSL 88 (395)
Q Consensus 9 p~~~~~~~~~~l~~f~~~G~lig~al~~~~~~~~~f~~~~~k~llg~~~~~~DL~~~D~~~~~sl~~l~~~~~~k~i~~~ 88 (395)
|++.+..+++++++|+|+|+++|+|+++|.+++++|+++|||+++|.+++++||+++||+++++|.+|+.++..
T Consensus 101 ~np~s~~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d~~------ 174 (380)
T 1zvd_A 101 INPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDIT------ 174 (380)
T ss_dssp ECTTGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHSCCT------
T ss_pred cCchhhcChHHHHHHHHhHHHHHHHHhCCceeCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhCCcc------
Confidence 44444557889999999999999999999999999999999999999999999999999999999998743100
Q ss_pred HHHHHhccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCCcccccchhhHHHHHHHHHHH
Q psy12632 89 FSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAET 168 (395)
Q Consensus 89 ~~af~~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g~~~~vt~~n~~e~i~~~~~~ 168 (395)
+ .+++.|+++....+....+||+|||+++.||.+|+.+|++.++++
T Consensus 175 ---------------------------------~-~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~ 220 (380)
T 1zvd_A 175 ---------------------------------G-VLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNW 220 (380)
T ss_dssp ---------------------------------T-TSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHH
T ss_pred ---------------------------------c-cccceeEEeeecCCcEeEEecCCCCCCCccccccHHHHHHHHHHH
Confidence 0 122556665544444568899999999999999999999999999
Q ss_pred hhchhHHHHHHHhhhcCCCCCCCCCCCCCCCCeeEecCCCCCCCCCCcccceeeecCCCCCHHHHHHHHHHHHHcCchhh
Q psy12632 169 RMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGF 248 (395)
Q Consensus 169 ~l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l~~~~i~~~~~~~LP~ahTCfn~L~LP~Yss~e~l~ekL~~AI~~~~~gf 248 (395)
++..+.++|..
T Consensus 221 ~l~~~i~~q~~--------------------------------------------------------------------- 231 (380)
T 1zvd_A 221 RFLRGIEAQFL--------------------------------------------------------------------- 231 (380)
T ss_dssp HHTTTTHHHHH---------------------------------------------------------------------
T ss_pred HHHHhHHHHHH---------------------------------------------------------------------
Confidence 99999999888
Q ss_pred HHhhhcccccCchhhcCCCHHHHHhhcCCCCCCCHHHHHhcccccCCCCCCchHHHHHHHHHHHHHHhCCHHHHHhhhhh
Q psy12632 249 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYF 328 (395)
Q Consensus 249 a~~~Gf~~v~p~~~l~~f~~~el~~l~~G~~~i~~~~l~~~~~~~~~~~~~s~~~~~~i~~fw~v~~~~~~~~~~~~L~F 328 (395)
||++||++|+|.++|++|+|+||+.++||.++||+++|+++|.|.| |+.++ ++|+|||+|+++||+++|++||+|
T Consensus 232 af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~g-y~~~~----~~i~~FW~vv~~~s~eer~~fL~F 306 (380)
T 1zvd_A 232 ALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKH-CTPDS----NIVKWFWKAVEFFDEERRARLLQF 306 (380)
T ss_dssp HHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEES-SCTTS----HHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEecC-CCCCc----chhhhHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985 66666 479999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCC------eeEec--CCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHhc-CCccc
Q psy12632 329 WTGSPALPASEDGFQPMP------SVTIR--PADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKT-KNFGF 394 (395)
Q Consensus 329 ~TG~~~~P~~~~g~~~~~------~i~~~--~~~~~~LP~a~TC~~~L~lP~Y~s~e~l~~kL~~ai~~-~~fg~ 394 (395)
||||+|+|+ +||+.+. +++|+ ..++++||+||||||+|+||+|+|+|+||+||++||++ +|||+
T Consensus 307 vTGs~rlP~--~Gf~~L~~~~gp~~f~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GF~l 379 (380)
T 1zvd_A 307 VTGSSRVPL--QGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAV 379 (380)
T ss_dssp HHSCSSBCT--TCGGGCEETTEECCEEEEECCCCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC------
T ss_pred HhCCCCCCC--cchhhccccCCCCceEEEecCCCCCCCCEEecCcCEEECCCCCCHHHHHHHHHHHHHhCCCcCc
Confidence 999999999 5998872 45664 56789999999999999999999999999999999997 79996
No 3
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=2.3e-63 Score=495.08 Aligned_cols=263 Identities=27% Similarity=0.431 Sum_probs=229.5
Q ss_pred HHHHHHHHhHHHHHHHhcCcccCCCCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHhhccccHHHHHHHHHhcccc
Q psy12632 19 RINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIRAGIFD 98 (395)
Q Consensus 19 ~l~~f~~~G~lig~al~~~~~~~~~f~~~~~k~llg~~~~~~DL~~~D~~~~~sl~~l~~~~~~k~i~~~~~af~~Gf~~ 98 (395)
+.++|+|+|++||+|+++|.+++++|+++|||+++|.+++++||+++||++++++++++.+.. ++++.
T Consensus 91 ~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~--d~~~~---------- 158 (358)
T 1c4z_A 91 TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEG--NVEDD---------- 158 (358)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCS--CHHHH----------
T ss_pred chHHHHhHHHHHHHHHHCCCCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCC--chhhh----------
Confidence 357899999999999999999999999999999999999999999999999999999986432 22211
Q ss_pred ccCcccccCCCHHHHHhhhcCCCcccccceEEEeee-ccCCCceEeecCCCcccccchhhHHHHHHHHHHHhhchhHHHH
Q psy12632 99 VVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMC-TEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKA 177 (395)
Q Consensus 99 vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~-~~~~~~~~eL~~~g~~~~vt~~n~~e~i~~~~~~~l~~~~e~~ 177 (395)
+++.|+++.. ..+....+||+|||+++.||.+|+.+|++.++++++..+.++|
T Consensus 159 --------------------------l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q 212 (358)
T 1c4z_A 159 --------------------------MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQ 212 (358)
T ss_dssp --------------------------TCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHH
T ss_pred --------------------------ccceEEEeccccCCCeeeeecCCCCcccccccccHHHHHHHHHHHHhcccHHHH
Confidence 1245555432 2333457899999999999999999999999999999999998
Q ss_pred HHHhhhcCCCCCCCCCCCCCCCCeeEecCCCCCCCCCCcccceeeecCCCCCHHHHHHHHHHHHHcCchhhHHhhhcccc
Q psy12632 178 IEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAIRAGIFDV 257 (395)
Q Consensus 178 ~~L~F~TG~~rlP~~~~gf~~l~~~~i~~~~~~~LP~ahTCfn~L~LP~Yss~e~l~ekL~~AI~~~~~gfa~~~Gf~~v 257 (395)
.. ||++||++|
T Consensus 213 ~~---------------------------------------------------------------------af~~Gf~~v 223 (358)
T 1c4z_A 213 FK---------------------------------------------------------------------AFRRGFHMV 223 (358)
T ss_dssp HH---------------------------------------------------------------------HHHHHHHHH
T ss_pred HH---------------------------------------------------------------------HHHHHHHHh
Confidence 88 999999999
Q ss_pred cCchhhc-CCCHHHHHhhcCCCCCCCHHHHHhcccccCCCCCCchHHHHHHHHHHHHHHhCCHHHHHhhhhhccCCCCCC
Q psy12632 258 VPASCLE-NLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALP 336 (395)
Q Consensus 258 ~p~~~l~-~f~~~el~~l~~G~~~i~~~~l~~~~~~~~~~~~~s~~~~~~i~~fw~v~~~~~~~~~~~~L~F~TG~~~~P 336 (395)
+|...|. +|+|+||+.++||.++||+++|+++|+|.++|+.++ ++|+|||+++++||+++|++||+|||||+|+|
T Consensus 224 ip~~~L~~lF~~~ELe~li~G~~~id~~~l~~~t~y~~gy~~~~----~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP 299 (358)
T 1c4z_A 224 TNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDS----VLIREFWEIVHSFTDEQKRLFLQFTTGTDRAP 299 (358)
T ss_dssp HSSSCSCSCSSTHHHHHHHHCBCCCCCTTTSTTCEEESSCCSSC----HHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBC
T ss_pred cCcchhhcCCCHHHHHHHhhcccCCCHHHHHHHceeCCCCCCCc----chhhhHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 9999886 899999999999999999999999999999998887 47999999999999999999999999999999
Q ss_pred CCCCCCCCCCeeEec--CCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHhc-CCcccC
Q psy12632 337 ASEDGFQPMPSVTIR--PADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKT-KNFGFV 395 (395)
Q Consensus 337 ~~~~g~~~~~~i~~~--~~~~~~LP~a~TC~~~L~lP~Y~s~e~l~~kL~~ai~~-~~fg~~ 395 (395)
+ +||+.+. ++|. +.++++||+||||||+|+||+|+|+|+||+||++||++ +||||+
T Consensus 300 ~--~Gf~~l~-~~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GFgl~ 358 (358)
T 1c4z_A 300 V--GGLGKLK-MIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 358 (358)
T ss_dssp T--TCGGGGC-CEEEEEEESCSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHHHC------
T ss_pred C--CCcccce-eeeecCCCCCCCCeEEEccCCEeECCCCCCHHHHHHHHHHHHHhCCCCCcC
Confidence 9 6998884 5553 45778999999999999999999999999999999997 899986
No 4
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=4.3e-62 Score=488.68 Aligned_cols=266 Identities=25% Similarity=0.418 Sum_probs=237.8
Q ss_pred CCCCCCCHHHHHHHHHHhHHHHHHHhcCcccCCCCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHhhccccHHHHH
Q psy12632 10 SLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLF 89 (395)
Q Consensus 10 ~~~~~~~~~~l~~f~~~G~lig~al~~~~~~~~~f~~~~~k~llg~~~~~~DL~~~D~~~~~sl~~l~~~~~~k~i~~~~ 89 (395)
++.+..+++|+++|+|+|++||+|+++|.+++++|+++|||+++|.+++++||+++||+++++|.++..++
T Consensus 101 ~p~s~~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~--------- 171 (374)
T 1nd7_A 101 NPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNN--------- 171 (374)
T ss_dssp CGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSSC---------
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHhcCCeeCCcCCHHHHHHHhCCCCCHHHHHHhhHHHHHhhhhhccCC---------
Confidence 33344678899999999999999999999999999999999999999999999999999999999987321
Q ss_pred HHHHhccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCCcccccchhhHHHHHHHHHHHh
Q psy12632 90 SAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETR 169 (395)
Q Consensus 90 ~af~~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g~~~~vt~~n~~e~i~~~~~~~ 169 (395)
..++++++.|+++....+....+||+|||+++.||.+|+.+|++.+++++
T Consensus 172 ------------------------------~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~ 221 (374)
T 1nd7_A 172 ------------------------------IEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWR 221 (374)
T ss_dssp ------------------------------SCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHH
T ss_pred ------------------------------hhhhhcceeEEEeeccCCceeeEecCCCCcCceeccccHHHHHHHHHHHH
Confidence 11223445666655444445789999999999999999999999999999
Q ss_pred hchhHHHHHHHhhhcCCCCCCCCCCCCCCCCeeEecCCCCCCCCCCcccceeeecCCCCCHHHHHHHHHHHHHcCchhhH
Q psy12632 170 MFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFA 249 (395)
Q Consensus 170 l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l~~~~i~~~~~~~LP~ahTCfn~L~LP~Yss~e~l~ekL~~AI~~~~~gfa 249 (395)
+..+.++|.. |
T Consensus 222 l~~~i~~q~~---------------------------------------------------------------------a 232 (374)
T 1nd7_A 222 FSRGVQEQTK---------------------------------------------------------------------A 232 (374)
T ss_dssp HHTTTHHHHH---------------------------------------------------------------------H
T ss_pred HhccHHHHHH---------------------------------------------------------------------H
Confidence 9999988888 9
Q ss_pred HhhhcccccCchhhcCCCHHHHHhhcCCCCCCCHHHHHhcccccCCCCCCchHHHHHHHHHHHHHHhCCHHHHHhhhhhc
Q psy12632 250 IRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFW 329 (395)
Q Consensus 250 ~~~Gf~~v~p~~~l~~f~~~el~~l~~G~~~i~~~~l~~~~~~~~~~~~~s~~~~~~i~~fw~v~~~~~~~~~~~~L~F~ 329 (395)
|++||++|+|.++|++|+|+||+.++||.++||+++|+++|.|.| |+.++ ++|+|||+||++||+++|++||+||
T Consensus 233 f~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~g-y~~~~----~~i~~FW~vv~~~~~eer~~fL~Fv 307 (374)
T 1nd7_A 233 FLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH-YTRNS----KQIIWFWQFVKETDNEVRMRLLQFV 307 (374)
T ss_dssp HHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEES-CCTTS----HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHhhhhhCCHHHHhcCCHHHHHHHhcCCCCCCHHHHhhheEEcC-CCCCC----cceeeHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 77776 4799999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCC------CeeEecC-CCCCCCcccccccccccCCCCCCHHHHHHHHHHHHhcC
Q psy12632 330 TGSPALPASEDGFQPM------PSVTIRP-ADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTK 390 (395)
Q Consensus 330 TG~~~~P~~~~g~~~~------~~i~~~~-~~~~~LP~a~TC~~~L~lP~Y~s~e~l~~kL~~ai~~~ 390 (395)
|||+|+|+ +||+.+ ++++|.+ .++++||+||||||+|+||+|+|+|+||+||++||+++
T Consensus 308 TGs~rlP~--~Gf~~L~~~~gp~~f~I~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~ 373 (374)
T 1nd7_A 308 TGTCRLPL--GGFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 373 (374)
T ss_dssp HSCSCCCT--TCGGGCEETTEECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSC
T ss_pred hCCCCCCC--cchhhccccCCCCceEEEeCCCCCcCCEEEcccCEEECCCCCCHHHHHHHHHHHHHhc
Confidence 99999999 588887 2577764 46789999999999999999999999999999999974
No 5
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=1.2e-61 Score=487.72 Aligned_cols=259 Identities=25% Similarity=0.483 Sum_probs=233.1
Q ss_pred CCHHHHHHHHHHhHHHHHHHhcCcccCCCCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHhhccccHHHHHHHHHh
Q psy12632 15 ASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIRA 94 (395)
Q Consensus 15 ~~~~~l~~f~~~G~lig~al~~~~~~~~~f~~~~~k~llg~~~~~~DL~~~D~~~~~sl~~l~~~~~~k~i~~~~~af~~ 94 (395)
.+++++++|+|+|+++|+|+++|.++|++|+++|||+++|.+++++||+++||+++++|.++..++. .
T Consensus 127 ~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~d~-~----------- 194 (392)
T 2oni_A 127 CNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDP-T----------- 194 (392)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHHHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHHSCC-G-----------
T ss_pred ccHHHHHHHHhcchhhhhhhcCCcccCccchHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHhcCCh-h-----------
Confidence 3578999999999999999999999999999999999999999999999999999999999874311 0
Q ss_pred ccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCCcccccchhhHHHHHHHHHHHhhchhH
Q psy12632 95 GIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQ 174 (395)
Q Consensus 95 Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g~~~~vt~~n~~e~i~~~~~~~l~~~~ 174 (395)
|+++.|+++....+....+||+|||+++.||.+|+.+|++.++++++..+.
T Consensus 195 -----------------------------~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i 245 (392)
T 2oni_A 195 -----------------------------ELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRV 245 (392)
T ss_dssp -----------------------------GGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHHHHHHTTTS
T ss_pred -----------------------------HceeeEEEeeecCCceeEEecCCCCccCccchhhHHHHHHHHHHHHHhhhH
Confidence 122456655444444458999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCCCCCeeEecCCCCCCCCCCcccceeeecCCCCCHHHHHHHHHHHHHcCchhhHHhhhc
Q psy12632 175 VKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAIRAGI 254 (395)
Q Consensus 175 e~~~~L~F~TG~~rlP~~~~gf~~l~~~~i~~~~~~~LP~ahTCfn~L~LP~Yss~e~l~ekL~~AI~~~~~gfa~~~Gf 254 (395)
+++.. ||++||
T Consensus 246 ~~q~~---------------------------------------------------------------------af~~Gf 256 (392)
T 2oni_A 246 QKQMN---------------------------------------------------------------------AFLEGF 256 (392)
T ss_dssp HHHHH---------------------------------------------------------------------HHHHHH
T ss_pred HHHHH---------------------------------------------------------------------HHHHHH
Confidence 88888 999999
Q ss_pred ccccCchhhcCCCHHHHHhhcCCCCCCCHHHHHhcccccCCCCCCchHHHHHHHHHHHHHHhCCHHHHHhhhhhccCCCC
Q psy12632 255 FDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPA 334 (395)
Q Consensus 255 ~~v~p~~~l~~f~~~el~~l~~G~~~i~~~~l~~~~~~~~~~~~~s~~~~~~i~~fw~v~~~~~~~~~~~~L~F~TG~~~ 334 (395)
++|+|..+|++|+|+||+.++||.++||+++|+++|.|.++|+.++ ++|+|||+|+++||+++|++||+|||||+|
T Consensus 257 ~~vip~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~~~~----~~i~~FW~vv~~~s~eer~~fL~FvTGs~r 332 (392)
T 2oni_A 257 TELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNH----PVIQWFWKAVLLMDAEKRIRLLQFVTGTSR 332 (392)
T ss_dssp HHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCCTTC----HHHHHHHHHHHHSCHHHHHHHHHHHHSCSC
T ss_pred HHhccHHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCCCCC----chheeHHHHHHhCCHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999998887 479999999999999999999999999999
Q ss_pred CCCCCCCCCCC------CeeEecC-CCCCCCcccccccccccCCCCCCHHHHHHHHHHHHhc
Q psy12632 335 LPASEDGFQPM------PSVTIRP-ADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKT 389 (395)
Q Consensus 335 ~P~~~~g~~~~------~~i~~~~-~~~~~LP~a~TC~~~L~lP~Y~s~e~l~~kL~~ai~~ 389 (395)
+|+ +||+.+ ++++|.+ .++++||+||||||+|+||+|+|+|+||+||++||++
T Consensus 333 lP~--~Gf~~L~~~~gp~~f~I~~~~~~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~~AI~n 392 (392)
T 2oni_A 333 VPM--NGFAELYGSNGPQLFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAVEN 392 (392)
T ss_dssp CCT--TCGGGCEETTEECCCEEEECSCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHC-
T ss_pred CCC--cchhhhcccCCCCceEEEeCCCCCcCcEEEcccCEeECCCCCCHHHHHHHHHHHHhC
Confidence 999 588877 2466654 4678999999999999999999999999999999985
No 6
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-61 Score=492.76 Aligned_cols=269 Identities=25% Similarity=0.469 Sum_probs=235.5
Q ss_pred CCCCCCCHHHHHHHHHHhHHHHHHHhcCcccCCCCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHhhccccHHHHH
Q psy12632 10 SLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLF 89 (395)
Q Consensus 10 ~~~~~~~~~~l~~f~~~G~lig~al~~~~~~~~~f~~~~~k~llg~~~~~~DL~~~D~~~~~sl~~l~~~~~~k~i~~~~ 89 (395)
++.+..+++++++|+|+|++||+||++|.+++++|+++|||+|+|.+++++||+++||+++++|.+++.++ ..+
T Consensus 152 np~s~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d-~~~----- 225 (429)
T 3olm_A 152 NPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENS-IDG----- 225 (429)
T ss_dssp CGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTCCCCHHHHHHHCHHHHHHHHHHTTSC-CTT-----
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHhcCCccCCCcCHHHHHhhcCCCCCHHHHHHHhHHHHHHHHHHHhCC-HHH-----
Confidence 33344567899999999999999999999999999999999999999999999999999999999986321 100
Q ss_pred HHHHhccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCCcccccchhhHHHHHHHHHHHh
Q psy12632 90 SAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETR 169 (395)
Q Consensus 90 ~af~~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g~~~~vt~~n~~e~i~~~~~~~ 169 (395)
.+++.|+++....+....+||+|||+++.||.+|+.+|++.+++++
T Consensus 226 ----------------------------------~l~l~F~~~~~~~g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~ 271 (429)
T 3olm_A 226 ----------------------------------VLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWR 271 (429)
T ss_dssp ----------------------------------TCCCBSEEEEEETTEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHH
T ss_pred ----------------------------------hhcCceEEEeccCCceeeEeccCCCcccccCchhHHHHHHHHHHHH
Confidence 0224555554443444678999999999999999999999999999
Q ss_pred hchhHHHHHHHhhhcCCCCCCCCCCCCCCCCeeEecCCCCCCCCCCcccceeeecCCCCCHHHHHHHHHHHHHcCchhhH
Q psy12632 170 MFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFA 249 (395)
Q Consensus 170 l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l~~~~i~~~~~~~LP~ahTCfn~L~LP~Yss~e~l~ekL~~AI~~~~~gfa 249 (395)
+.++.+++.. |
T Consensus 272 l~~~v~~q~~---------------------------------------------------------------------a 282 (429)
T 3olm_A 272 IVDRVQEQFK---------------------------------------------------------------------A 282 (429)
T ss_dssp HTTTTHHHHH---------------------------------------------------------------------H
T ss_pred HHHhHHHHHH---------------------------------------------------------------------H
Confidence 9999999888 9
Q ss_pred HhhhcccccCchhhcCCCHHHHHhhcCCCCCCCHHHHHhcccccCCCCCCchHHHHHHHHHHHHHHhCCHHHHHhhhhhc
Q psy12632 250 IRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFW 329 (395)
Q Consensus 250 ~~~Gf~~v~p~~~l~~f~~~el~~l~~G~~~i~~~~l~~~~~~~~~~~~~s~~~~~~i~~fw~v~~~~~~~~~~~~L~F~ 329 (395)
|++||++|+|..+|++|+|+||+.++||.++||+++|+++|.|.| |+.++ ++|+|||+|+++||+++|++||+||
T Consensus 283 F~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~id~~dl~~~t~y~G-y~~~~----~~I~~FW~vv~~~s~eer~~fL~Fv 357 (429)
T 3olm_A 283 FMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRG-YQESD----EVIQWFWKCVSEWDNEQRARLLQFT 357 (429)
T ss_dssp HHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCCCHHHHHHTEEEES-CCTTS----HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhhhcCCHHHHhcCCHHHHHHHhcCCCCCCHHHHHHhccccC-CCCCc----hHHHHHHHHHHhCCHHHHHHHHhHh
Confidence 999999999999999999999999999999999999999999975 76666 4799999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCC------eeEecC-CCCCCCcccccccccccCCCCCCHHHHHHHHHHHHhc-CCccc
Q psy12632 330 TGSPALPASEDGFQPMP------SVTIRP-ADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKT-KNFGF 394 (395)
Q Consensus 330 TG~~~~P~~~~g~~~~~------~i~~~~-~~~~~LP~a~TC~~~L~lP~Y~s~e~l~~kL~~ai~~-~~fg~ 394 (395)
|||+|+|+ +||+.++ +++|.. .++++||+||||||+|+||.|+|+|+||+||++||++ +|||.
T Consensus 358 TGs~rlP~--~Gf~~L~~~~g~~~f~I~~~~~~~~LP~A~TCfN~L~LP~Yss~e~L~ekL~~AI~~~~GFg~ 428 (429)
T 3olm_A 358 TGTSRIPV--NGFKDLQGSDGPRRFTIEKAGEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIGFGQ 428 (429)
T ss_dssp HSCSCBCT--TCGGGCEETTEECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHHTC----
T ss_pred cCCCCCCC--cccccccCcCCCceEEEeeCCCCCCCCccccccCEeECCCCCCHHHHHHHHHHHHHcCCCCCC
Confidence 99999999 6998884 577764 4678999999999999999999999999999999997 89985
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=100.00 E-value=8.7e-42 Score=287.11 Aligned_cols=117 Identities=74% Similarity=1.230 Sum_probs=85.0
Q ss_pred CCCCHHHHHhcccccCCCCCCchHHHHHHHHHHHHHHhCCHHHHHhhhhhccCCCCCCCCCCCCCCCCeeEecCCCCCCC
Q psy12632 279 GDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHL 358 (395)
Q Consensus 279 ~~i~~~~l~~~~~~~~~~~~~s~~~~~~i~~fw~v~~~~~~~~~~~~L~F~TG~~~~P~~~~g~~~~~~i~~~~~~~~~L 358 (395)
+-||+++|++||.|.++++.+++..+++|+|||+++++||+++|++||+|||||+|+|+++.||+.+|+++|.+.++++|
T Consensus 2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l~~~~i~~~~~~~L 81 (118)
T 3pt3_A 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHL 81 (118)
T ss_dssp ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC------------CEEEEESCCTTSC
T ss_pred CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccCCcEEEECCCCCCC
Confidence 56899999999999999988887777899999999999999999999999999999999656999999999998899999
Q ss_pred cccccccccccCCCCCCHHHHHHHHHHHHhcCCcccC
Q psy12632 359 PTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFV 395 (395)
Q Consensus 359 P~a~TC~~~L~lP~Y~s~e~l~~kL~~ai~~~~fg~~ 395 (395)
|+||||||+|+||.|+|+|+||+||++||+++|||||
T Consensus 82 P~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~~gfGfv 118 (118)
T 3pt3_A 82 PTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV 118 (118)
T ss_dssp CEEETTTTEEEEECCSSHHHHHHHHHHHHC-------
T ss_pred ccceehhceeECCCCCCHHHHHHHHHHHHHhCCcCCC
Confidence 9999999999999999999999999999999999997
No 8
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=1.4e-33 Score=283.98 Aligned_cols=163 Identities=25% Similarity=0.424 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHhccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCC
Q psy12632 69 MYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGG 148 (395)
Q Consensus 69 ~~~sl~~l~~~~~~k~i~~~~~af~~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g 148 (395)
..+.++.+.....+++++.|++||++||++|+|.++++.|+|+||+.|+||.++||++++...+.+. |.
T Consensus 234 k~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~-----------gy 302 (405)
T 3h1d_A 234 KKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYH-----------KY 302 (405)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEE-----------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCccc-----------CC
Confidence 3344444555556778999999999999999999999999999999999999999999886654332 23
Q ss_pred cccccchhhHHHHHHHHHHHhhchhHHHHHHHhhhcCCCCCCCCCCCCCCC------CeeEecC--CCCCCCCCCcccce
Q psy12632 149 RDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPM------PSVTIRP--ADDAHLPTANTCIS 220 (395)
Q Consensus 149 ~~~~vt~~n~~e~i~~~~~~~l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l------~~~~i~~--~~~~~LP~ahTCfn 220 (395)
...+.++.|+|+++.. +++++|+.+|+|+||++|+|+ +||+.+ ++|+|++ .++++||+||||||
T Consensus 303 ~~~~~~i~~FW~v~~~------~s~eer~~fL~FvTGs~rlP~--~Gf~~L~~~~~~~~f~i~~~~~~~~~LP~a~TCfn 374 (405)
T 3h1d_A 303 QSNSIQIQWFWRALRS------FDQADRAKFLQFVTGTSKVPL--QGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFN 374 (405)
T ss_dssp CTTCHHHHHHHHHHHH------SCHHHHHHHHHHHHSSSCCCT--TCGGGCBCSSSBCCEEEEEECSCTTSCCEEEGGGT
T ss_pred CCCCchHhhHHHHHHh------CCHHHHHHHHHHHcCCCCCCC--CccccccccCCCceEEEeeCCCCCCCCccceeccC
Confidence 3456778999999987 999999999999999999999 888876 5788864 46789999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHcCchhhHH
Q psy12632 221 RLYIPLYSSRATLRHKLLLAIKTKNFGFAI 250 (395)
Q Consensus 221 ~L~LP~Yss~e~l~ekL~~AI~~~~~gfa~ 250 (395)
+|+||+|+|+|+||+||.+||++++.||++
T Consensus 375 ~L~LP~Yss~e~l~ekL~~AI~e~~~GFgl 404 (405)
T 3h1d_A 375 QLDLPAYESFEKLRHMLLLAIQEASEGFGL 404 (405)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHC-------
T ss_pred EeECCCCCCHHHHHHHHHHHHHhCCCCcCC
Confidence 999999999999999999999986555543
No 9
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=281.86 Aligned_cols=161 Identities=27% Similarity=0.387 Sum_probs=134.3
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHhccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCC
Q psy12632 69 MYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGG 148 (395)
Q Consensus 69 ~~~sl~~l~~~~~~k~i~~~~~af~~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g 148 (395)
..+.++.+.....+++++.|++||++||.+|+|.++++.|+++||+.|+||.++||++++...+.+. |.
T Consensus 210 ~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~-----------gy 278 (380)
T 1zvd_A 210 KKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLK-----------HC 278 (380)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEE-----------SS
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEec-----------CC
Confidence 3344444555556778999999999999999999999999999999999999999999776543331 23
Q ss_pred cccccchhhHHHHHHHHHHHhhchhHHHHHHHhhhcCCCCCCCCCCCCCCCC------eeEec--CCCCCCCCCCcccce
Q psy12632 149 RDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMP------SVTIR--PADDAHLPTANTCIS 220 (395)
Q Consensus 149 ~~~~vt~~n~~e~i~~~~~~~l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l~------~~~i~--~~~~~~LP~ahTCfn 220 (395)
...+.++.|+|+++.. +++++|+.+|+|+||++|+|+ +||+.++ +|+|+ ..++++||+||||||
T Consensus 279 ~~~~~~i~~FW~vv~~------~s~eer~~fL~FvTGs~rlP~--~Gf~~L~~~~gp~~f~I~~~~~~~~~LP~a~TCfn 350 (380)
T 1zvd_A 279 TPDSNIVKWFWKAVEF------FDEERRARLLQFVTGSSRVPL--QGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFN 350 (380)
T ss_dssp CTTSHHHHHHHHHHHH------SCHHHHHHHHHHHHSCSSBCT--TCGGGCEETTEECCEEEEECCCCTTSCCEEEGGGT
T ss_pred CCCcchhhhHHHHHHh------CCHHHHHHHHHHHhCCCCCCC--cchhhccccCCCCceEEEecCCCCCCCCEEecCcC
Confidence 3456778999999987 899999999999999999999 8999883 68886 467889999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHcC-chhh
Q psy12632 221 RLYIPLYSSRATLRHKLLLAIKTK-NFGF 248 (395)
Q Consensus 221 ~L~LP~Yss~e~l~ekL~~AI~~~-~~gf 248 (395)
+|+||+|+|+|+||+||++||+++ |||+
T Consensus 351 ~L~LP~Y~s~e~l~~kL~~AI~~~~GF~l 379 (380)
T 1zvd_A 351 RIDIPPYESYEKLYEKLLTAIEETCGFAV 379 (380)
T ss_dssp EEEECCCSSHHHHHHHHHHHHCC------
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcCc
Confidence 999999999999999999999986 5543
No 10
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=99.98 E-value=6.3e-33 Score=275.93 Aligned_cols=159 Identities=28% Similarity=0.431 Sum_probs=130.9
Q ss_pred HHHHHHHHhhccccHHHHHHHHHhccccccCccccc-CCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCCc
Q psy12632 71 ESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLE-NLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGR 149 (395)
Q Consensus 71 ~sl~~l~~~~~~k~i~~~~~af~~Gf~~vi~~~~l~-~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g~ 149 (395)
+.++.+.....++.++.|++||++||.+|+|...+. .|+|+||+.++||.++||++++...+.+. .|..
T Consensus 195 eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~id~~~l~~~t~y~----------~gy~ 264 (358)
T 1c4z_A 195 EFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYD----------GGYT 264 (358)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCCCCCTTTSTTCEEE----------SSCC
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhhcccCCCHHHHHHHceeC----------CCCC
Confidence 344444445556789999999999999999999886 89999999999999999999776544332 1223
Q ss_pred ccccchhhHHHHHHHHHHHhhchhHHHHHHHhhhcCCCCCCCCCCCCCCCCeeEec--CCCCCCCCCCcccceeeecCCC
Q psy12632 150 DLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIR--PADDAHLPTANTCISRLYIPLY 227 (395)
Q Consensus 150 ~~~vt~~n~~e~i~~~~~~~l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l~~~~i~--~~~~~~LP~ahTCfn~L~LP~Y 227 (395)
..+.++.|+|+++.. +++++|+.+|+|+||++|+|+ +||+.+ +++|. +.++++||+||||||+|+||+|
T Consensus 265 ~~~~~i~~FW~vv~~------~~~eer~~fL~FvTGs~rlP~--~Gf~~l-~~~I~~~~~~~~~LP~a~TCfn~L~LP~Y 335 (358)
T 1c4z_A 265 RDSVLIREFWEIVHS------FTDEQKRLFLQFTTGTDRAPV--GGLGKL-KMIIAKNGPDTERLPTSHTCFNVLLLPEY 335 (358)
T ss_dssp SSCHHHHHHHHHHHT------SCHHHHHHHHHHHSSSSSBCT--TCGGGG-CCEEEEEEESCSCCCEEEGGGTEEEEEEC
T ss_pred CCcchhhhHHHHHHh------CCHHHHHHHHHHHcCCCCCCC--CCcccc-eeeeecCCCCCCCCeEEEccCCEeECCCC
Confidence 346778999999987 999999999999999999999 899888 36664 3567899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcC-chhh
Q psy12632 228 SSRATLRHKLLLAIKTK-NFGF 248 (395)
Q Consensus 228 ss~e~l~ekL~~AI~~~-~~gf 248 (395)
+|+|+||+||.+||+++ |||+
T Consensus 336 ~s~e~l~~kL~~AI~~~~GFgl 357 (358)
T 1c4z_A 336 SSKEKLKERLLKAITYAKGFGM 357 (358)
T ss_dssp SCHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999987 5543
No 11
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=99.97 E-value=2.4e-32 Score=273.31 Aligned_cols=157 Identities=22% Similarity=0.358 Sum_probs=133.7
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHhccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCC
Q psy12632 69 MYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGG 148 (395)
Q Consensus 69 ~~~sl~~l~~~~~~k~i~~~~~af~~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g 148 (395)
..+.++.+.....++.++.|++||++||.+|+|.++++.|+++||+.|+||.++||++++...+.+. |.
T Consensus 210 ~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~-----------gy 278 (374)
T 1nd7_A 210 KDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYR-----------HY 278 (374)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEE-----------SC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCCCCCHHHHhhheEEc-----------CC
Confidence 3344444444455667999999999999999999999999999999999999999999776544332 22
Q ss_pred cccccchhhHHHHHHHHHHHhhchhHHHHHHHhhhcCCCCCCCCCCCCCCC------CeeEecC-CCCCCCCCCccccee
Q psy12632 149 RDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPM------PSVTIRP-ADDAHLPTANTCISR 221 (395)
Q Consensus 149 ~~~~vt~~n~~e~i~~~~~~~l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l------~~~~i~~-~~~~~LP~ahTCfn~ 221 (395)
...+.++.|+|+++.. +++++|+.+|+|+||++|+|+ +||+.+ ++|+|+. +++++||+||||||+
T Consensus 279 ~~~~~~i~~FW~vv~~------~~~eer~~fL~FvTGs~rlP~--~Gf~~L~~~~gp~~f~I~~~~~~~~LP~a~TCfn~ 350 (374)
T 1nd7_A 279 TRNSKQIIWFWQFVKE------TDNEVRMRLLQFVTGTCRLPL--GGFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNR 350 (374)
T ss_dssp CTTSHHHHHHHHHHHH------SCHHHHHHHHHHHHSCSCCCT--TCGGGCEETTEECCEEEECCSCTTSCCEEEGGGTE
T ss_pred CCCCcceeeHHHHHHh------cCHHHHHHHHHHHhCCCCCCC--cchhhccccCCCCceEEEeCCCCCcCCEEEcccCE
Confidence 3456778999999987 999999999999999999999 899988 3799975 467899999999999
Q ss_pred eecCCCCCHHHHHHHHHHHHHcC
Q psy12632 222 LYIPLYSSRATLRHKLLLAIKTK 244 (395)
Q Consensus 222 L~LP~Yss~e~l~ekL~~AI~~~ 244 (395)
|+||+|+|+|+||+||++||+++
T Consensus 351 L~LP~Y~s~e~l~~kL~~AI~~~ 373 (374)
T 1nd7_A 351 LDLPPYKSYEQLKEKLLFAIEET 373 (374)
T ss_dssp EECCCCSSHHHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999985
No 12
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-32 Score=278.01 Aligned_cols=161 Identities=20% Similarity=0.401 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHhccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCC
Q psy12632 68 VMYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPG 147 (395)
Q Consensus 68 ~~~~sl~~l~~~~~~k~i~~~~~af~~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~ 147 (395)
...+.++.+.....++.++.|++||++||.+|+|.++++.|+++||+.|+||.++||++++...+.+. |
T Consensus 259 Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~id~~dl~~~t~y~-----------G 327 (429)
T 3olm_A 259 NKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYR-----------G 327 (429)
T ss_dssp THHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCCCHHHHHHTEEEE-----------S
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCCCCHHHHHHhcccc-----------C
Confidence 33344444555556677999999999999999999999999999999999999999999876544331 3
Q ss_pred CcccccchhhHHHHHHHHHHHhhchhHHHHHHHhhhcCCCCCCCCCCCCCCCC------eeEecC-CCCCCCCCCcccce
Q psy12632 148 GRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMP------SVTIRP-ADDAHLPTANTCIS 220 (395)
Q Consensus 148 g~~~~vt~~n~~e~i~~~~~~~l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l~------~~~i~~-~~~~~LP~ahTCfn 220 (395)
....+.++.|+|+++.. +++++|+.+|+|+||++|+|+ +||+.++ +|+|+. +++++||+||||||
T Consensus 328 y~~~~~~I~~FW~vv~~------~s~eer~~fL~FvTGs~rlP~--~Gf~~L~~~~g~~~f~I~~~~~~~~LP~A~TCfN 399 (429)
T 3olm_A 328 YQESDEVIQWFWKCVSE------WDNEQRARLLQFTTGTSRIPV--NGFKDLQGSDGPRRFTIEKAGEVQQLPKSHTCFN 399 (429)
T ss_dssp CCTTSHHHHHHHHHHHH------SCHHHHHHHHHHHHSCSCBCT--TCGGGCEETTEECCEEEECCSCTTSCCEEEGGGT
T ss_pred CCCCchHHHHHHHHHHh------CCHHHHHHHHhHhcCCCCCCC--cccccccCcCCCceEEEeeCCCCCCCCccccccC
Confidence 33456778999999987 899999999999999999999 8999884 699865 46789999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHcC-chh
Q psy12632 221 RLYIPLYSSRATLRHKLLLAIKTK-NFG 247 (395)
Q Consensus 221 ~L~LP~Yss~e~l~ekL~~AI~~~-~~g 247 (395)
+|+||.|+|+|+||+||.+||+++ |||
T Consensus 400 ~L~LP~Yss~e~L~ekL~~AI~~~~GFg 427 (429)
T 3olm_A 400 RVDLPQYVDYDSMKQKLTLAVEETIGFG 427 (429)
T ss_dssp EEECCCCSSHHHHHHHHHHHHHHTC---
T ss_pred EeECCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999986 554
No 13
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=99.97 E-value=4e-32 Score=273.07 Aligned_cols=154 Identities=22% Similarity=0.377 Sum_probs=130.1
Q ss_pred HHHHHHHhhccccHHHHHHHHHhccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCCccc
Q psy12632 72 SLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDL 151 (395)
Q Consensus 72 sl~~l~~~~~~k~i~~~~~af~~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g~~~ 151 (395)
.++.+.....+++++.|++||++||.+|+|.++++.|+++||+.|+||.++||++++...+.+. .|....
T Consensus 232 Yv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~----------~gy~~~ 301 (392)
T 2oni_A 232 YIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYK----------NGYCPN 301 (392)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEE----------TTCCTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEEC----------CCCCCC
Confidence 3333444445667999999999999999999999999999999999999999998775443321 122344
Q ss_pred ccchhhHHHHHHHHHHHhhchhHHHHHHHhhhcCCCCCCCCCCCCCCC------CeeEecC-CCCCCCCCCcccceeeec
Q psy12632 152 EVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPM------PSVTIRP-ADDAHLPTANTCISRLYI 224 (395)
Q Consensus 152 ~vt~~n~~e~i~~~~~~~l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l------~~~~i~~-~~~~~LP~ahTCfn~L~L 224 (395)
+.++.|+|+++.. +++++|+.+|+|+||++|+|+ +||+.+ ++|+|++ +++++||+||||||+|+|
T Consensus 302 ~~~i~~FW~vv~~------~s~eer~~fL~FvTGs~rlP~--~Gf~~L~~~~gp~~f~I~~~~~~~~LP~a~TCfn~L~L 373 (392)
T 2oni_A 302 HPVIQWFWKAVLL------MDAEKRIRLLQFVTGTSRVPM--NGFAELYGSNGPQLFTIEQWGSPEKLPRAHTCFNRLDL 373 (392)
T ss_dssp CHHHHHHHHHHHH------SCHHHHHHHHHHHHSCSCCCT--TCGGGCEETTEECCCEEEECSCTTSCCEEEGGGTEEEE
T ss_pred CchheeHHHHHHh------CCHHHHHHHHHHHhCCCCCCC--cchhhhcccCCCCceEEEeCCCCCcCcEEEcccCEeEC
Confidence 6678999999987 999999999999999999999 899987 3688865 467899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q psy12632 225 PLYSSRATLRHKLLLAIKT 243 (395)
Q Consensus 225 P~Yss~e~l~ekL~~AI~~ 243 (395)
|+|+|+|+||+||++||+|
T Consensus 374 P~Yss~e~L~~kL~~AI~n 392 (392)
T 2oni_A 374 PPYETFEDLREKLLMAVEN 392 (392)
T ss_dssp CCCSSHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 9999999999999999975
No 14
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=99.96 E-value=1.4e-30 Score=218.79 Aligned_cols=115 Identities=58% Similarity=0.914 Sum_probs=74.5
Q ss_pred cccccceEEEeeeccCCCceEeecCCCcccccchhhHHHHHHHHHHHhhchhHHHHHHHhhhcCCCCCCCCCCCCCCCCe
Q psy12632 122 DINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPS 201 (395)
Q Consensus 122 ~id~~~~f~~~~~~~~~~~~~eL~~~g~~~~vt~~n~~e~i~~~~~~~l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l~~ 201 (395)
-||+++|...+.+..+.....+ ..+.+++|+|++++. +++++|+.+|+|+||++|+|++++||+.+|+
T Consensus 3 ~~Dv~dLr~~T~Y~~~~~~~~~------~~~~~i~wFW~vv~~------~~~eer~~fL~FvTGs~rlP~~~~Gf~~l~~ 70 (118)
T 3pt3_A 3 LGSVQMLISFTSFNDESGENAE------KLLQFKRWFWSIVEK------MSMTERQDLVYFWTSSPSLPASEEGFQPMPS 70 (118)
T ss_dssp ---------CCEEEECSCCCHH------HHHHHHHHHHHHHHH------CCHHHHHHHHHHHHSCC------------CE
T ss_pred ccCHHHHHhhcEEcCCcCCCcc------ccchHHHHHHHHHHH------CCHHHHHHHHhHhcCCCCCCCcccCcccCCc
Confidence 4778888776555433222110 113678999999988 9999999999999999999998789999999
Q ss_pred eEecCCCCCCCCCCcccceeeecCCCCCHHHHHHHHHHHHHcCchhh
Q psy12632 202 VTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGF 248 (395)
Q Consensus 202 ~~i~~~~~~~LP~ahTCfn~L~LP~Yss~e~l~ekL~~AI~~~~~gf 248 (395)
|+|.+.++++||+||||||+|+||.|+|+|+|++||.+||++++|||
T Consensus 71 ~~i~~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~~gfGf 117 (118)
T 3pt3_A 71 ITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGF 117 (118)
T ss_dssp EEEESCCTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC------
T ss_pred EEEECCCCCCCccceehhceeECCCCCCHHHHHHHHHHHHHhCCcCC
Confidence 99998899999999999999999999999999999999999988876
No 15
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.80 E-value=60 Score=25.40 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=28.5
Q ss_pred CCcccccccccccCCCCCCHHHHHHHHHHHHhc
Q psy12632 357 HLPTANTCISRLYIPLYSSRATLRHKLLLAIKT 389 (395)
Q Consensus 357 ~LP~a~TC~~~L~lP~Y~s~e~l~~kL~~ai~~ 389 (395)
..|-.+||+..--||.=-+.+.|++.|...-.+
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~ 36 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDN 36 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 467789998889999999999999999887775
No 16
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=21.89 E-value=79 Score=19.83 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHHHHHHHH--hCCHHHHHhhhh
Q psy12632 307 KRWLWSIVE--KMTHLERMDLVY 327 (395)
Q Consensus 307 i~~fw~v~~--~~~~~~~~~~L~ 327 (395)
-+-|.+||+ .+|+++|-.+++
T Consensus 6 QnaFYevLh~~nLtEeQrn~yI~ 28 (34)
T 1l6x_B 6 QRRFYEALHDPNLNEEQRNAKIK 28 (34)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHhHHH
Confidence 467999997 899999998875
Done!