RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12632
(395 letters)
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
with. E3 ubiquitin-protein ligases. Can bind to E2
enzymes.
Length = 328
Score = 197 bits (502), Expect = 5e-60
Identities = 88/299 (29%), Positives = 125/299 (41%), Gaps = 75/299 (25%)
Query: 4 TLFYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLA 63
L Y A+ E ++ FR GR+LG L N L LF R K +LG+P+ HDL
Sbjct: 49 YLLYPNPRSGFANEEHLSYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLE 108
Query: 64 FFDPVMYESLRQLVVDSENKNLTSL----------------------------------- 88
DP +Y+SL+ L+++++ L
Sbjct: 109 SLDPELYKSLKWLLLNNDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEY 168
Query: 89 ----------------FSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISID 132
A R G +V+P + L+ PE+ LL+ G +I+V L S
Sbjct: 169 VHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKS-- 226
Query: 133 MCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAET-RMFKSQVKAIEVYFWTGSPALPA 191
TE GG + + ++ + E F ++ + + F TGS LP
Sbjct: 227 -NTEYKGGY------SANSQT--------IKWFWEVVESFTNEERRKLLQFVTGSSRLPV 271
Query: 192 SEDGFQPM-PSVTIRPA--DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIK-TKNF 246
GF + P TIR A DD LPTA+TC +RL +P YSS+ LR KLLLAI K F
Sbjct: 272 --GGFAALSPKFTIRKAGSDDERLPTAHTCFNRLKLPPYSSKEILREKLLLAINEGKGF 328
Score = 163 bits (416), Expect = 2e-47
Identities = 62/148 (41%), Positives = 82/148 (55%), Gaps = 10/148 (6%)
Query: 249 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 308
A R G +V+P + L+ PE+ LL+ G +I+V L S T + S+ + +
Sbjct: 187 AFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKSNTEYKGGYSANSQTI----K 242
Query: 309 WLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPM-PSVTIRPA--DDAHLPTANTCI 365
W W +VE T+ ER L+ F TGS LP GF + P TIR A DD LPTA+TC
Sbjct: 243 WFWEVVESFTNEERRKLLQFVTGSSRLPV--GGFAALSPKFTIRKAGSDDERLPTAHTCF 300
Query: 366 SRLYIPLYSSRATLRHKLLLAIK-TKNF 392
+RL +P YSS+ LR KLLLAI K F
Sbjct: 301 NRLKLPPYSSKEILREKLLLAINEGKGF 328
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
subclass of Ubiquitin-protein ligase (E3). It binds
specific ubiquitin-conjugating enzymes (E2), accepts
ubiquitin from E2, transfers ubiquitin to substrate
lysine side chains, and transfers additional ubiquitin
molecules to the end of growing ubiquitin chains.
Length = 352
Score = 161 bits (409), Expect = 4e-46
Identities = 85/291 (29%), Positives = 115/291 (39%), Gaps = 75/291 (25%)
Query: 13 SPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYES 72
S A + + FR GR+LG L + L L +R K +LG+P+ DL DP +Y+S
Sbjct: 81 SFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKS 140
Query: 73 LRQL-------------------------------------VVDSENK------------ 83
L++L V +ENK
Sbjct: 141 LKELLDNDGDEDDLELTFTIELDSSFGGAVTVELKPGGRDIPVTNENKEEYVDLYVDYRL 200
Query: 84 --NLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGS 141
+ A R G +V+P L TPE+ LL+ G DI++ L TE GG
Sbjct: 201 NKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKN---TEYKGGY 257
Query: 142 IELVPGGRDL-EVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPM- 199
P + EV S F ++ + + F TGS LP GF +
Sbjct: 258 SSDSPTIQWFWEVLES--------------FTNEERKKFLQFVTGSSRLPV--GGFADLN 301
Query: 200 PSVTIRPAD--DAHLPTANTCISRLYIPLYSSRATLRHKLLLAIK-TKNFG 247
P TIR D LPTA+TC + L +P YSS+ LR KLL AI FG
Sbjct: 302 PKFTIRRVGSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAGFG 352
Score = 140 bits (355), Expect = 3e-38
Identities = 55/149 (36%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 249 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 308
A R G +V+P L TPE+ LL+ G DI++ L T + +
Sbjct: 210 AFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEY----KGGYSSDSPTIQ 265
Query: 309 WLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPM-PSVTIRPAD--DAHLPTANTCI 365
W W ++E T+ ER + F TGS LP GF + P TIR D LPTA+TC
Sbjct: 266 WFWEVLESFTNEERKKFLQFVTGSSRLPV--GGFADLNPKFTIRRVGSPDDRLPTAHTCF 323
Query: 366 SRLYIPLYSSRATLRHKLLLAIK-TKNFG 393
+ L +P YSS+ LR KLL AI FG
Sbjct: 324 NLLKLPPYSSKEILREKLLYAINEGAGFG 352
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase). The name
HECT comes from Homologous to the E6-AP Carboxyl
Terminus.
Length = 298
Score = 139 bits (353), Expect = 2e-38
Identities = 78/294 (26%), Positives = 113/294 (38%), Gaps = 69/294 (23%)
Query: 6 FYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFF 65
+ SP S F+ G ++G + L L K +LG+PI DL
Sbjct: 24 LLWPNPGSPESSADEELFKFLGALIGKAIYNGILLDLPFPPAFWKKLLGKPITLEDLEEV 83
Query: 66 DPVMYESLRQL---------------------------------VVDSENKN-------- 84
DP +Y SL+ L V +ENK
Sbjct: 84 DPELYRSLKSLLELDGDEEELCLTFTVSGEGEGTIELIPNGSNIPVTNENKEEYVNLYVD 143
Query: 85 ------LTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEG 138
+ A R G + V+P L TPE+ LL+ G +I+V L +G
Sbjct: 144 YRLNESIKKQLEAFREGFYSVIPKELLSLFTPEELELLICGSPEIDVEDLKKN--TEYDG 201
Query: 139 GGSIELVPGGRDLEVTSSNVYDYVRKY--AETRMFKSQVKAIEVYFWTGSPALPASEDGF 196
G S T ++ + ++ E R F + F TGS LP GF
Sbjct: 202 GYSKN--------SPTIKWFWEVLEEFTQEERRKF--------LKFVTGSSRLPLG--GF 243
Query: 197 QPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAI 250
+ + R DD LPTA+TC +RL +P YSS+ L+ KLL+AI+ + GF +
Sbjct: 244 KKLKITIQRKDDDDRLPTAHTCFNRLKLPPYSSKEILKEKLLIAIEEGSEGFGL 297
Score = 134 bits (339), Expect = 2e-36
Identities = 54/146 (36%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 249 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 308
A R G + V+P L TPE+ LL+ G +I+V L T + + S +
Sbjct: 156 AFREGFYSVIPKELLSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYSKNS----PTIK 211
Query: 309 WLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRL 368
W W ++E+ T ER + F TGS LP GF+ + R DD LPTA+TC +RL
Sbjct: 212 WFWEVLEEFTQEERRKFLKFVTGSSRLPLG--GFKKLKITIQRKDDDDRLPTAHTCFNRL 269
Query: 369 YIPLYSSRATLRHKLLLAIKTKNFGF 394
+P YSS+ L+ KLL+AI+ + GF
Sbjct: 270 KLPPYSSKEILKEKLLIAIEEGSEGF 295
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 90.2 bits (224), Expect = 2e-19
Identities = 70/292 (23%), Positives = 115/292 (39%), Gaps = 79/292 (27%)
Query: 18 ERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLV 77
E ++ F+ GR++G + + + + ++ K +LG+P+ DL DP +Y SL L+
Sbjct: 600 EHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLL 659
Query: 78 ------------------------------------VDSENKNL-----------TSL-- 88
V +ENK +
Sbjct: 660 NNDIDETILDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEK 719
Query: 89 -FSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD-INVTVLISIDMCTEEGGGSIELVP 146
FSA ++G +++P L+ + LL+ G+ + I++ S T G
Sbjct: 720 QFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSN---TAYHG------- 769
Query: 147 GGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGF---QPMPSV- 202
S + + +E F + +A + F TG+ +P + GF Q V
Sbjct: 770 ----YTEDSPIIVWFWEIISE---FDFEERAKLLQFVTGTSRIPIN--GFKDLQGSDGVR 820
Query: 203 --TIRPA--DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAI-KTKNFGFA 249
TI DD LP+A+TC +RL +P YSS+ LR KLL AI + FG
Sbjct: 821 KFTIEKGGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAGFGLL 872
Score = 80.2 bits (198), Expect = 3e-16
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 19/157 (12%)
Query: 249 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGD-INVTVLISYTSFIDESG-EPSERLIKF 306
A ++G +++P L+ + LL+ G+ + I++ + S G +I
Sbjct: 723 AFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDID---DWKSNTAYHGYTEDSPIIV- 778
Query: 307 KRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGF---QPMPSV---TIRPA--DDAHL 358
W W I+ + ER L+ F TG+ +P + GF Q V TI DD L
Sbjct: 779 --WFWEIISEFDFEERAKLLQFVTGTSRIPIN--GFKDLQGSDGVRKFTIEKGGTDDDRL 834
Query: 359 PTANTCISRLYIPLYSSRATLRHKLLLAI-KTKNFGF 394
P+A+TC +RL +P YSS+ LR KLL AI + FG
Sbjct: 835 PSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAGFGL 871
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 34.1 bits (78), Expect = 0.16
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 311 WSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRL 368
W +E+ T+L+R+ L Y G P+ AS D F T+ P + L TANT +S L
Sbjct: 339 WYPIERETYLDRLSLRYEKEGKPSELASVDVFVS----TVDPMKEPPLITANTVLSIL 392
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase.
Length = 1040
Score = 32.7 bits (74), Expect = 0.35
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 303 LIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTAN 362
L +F +W +++ T+L+R+ L Y G P + + D F T+ P + L TAN
Sbjct: 299 LDQFPKWF--PIDRETYLDRLSLRYEREGEPNMLSPVDIFVS----TVDPLKEPPLVTAN 352
Query: 363 TCISRL 368
T +S L
Sbjct: 353 TVLSIL 358
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic
subunit.
Length = 1079
Score = 32.6 bits (74), Expect = 0.40
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 311 WSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYI 370
W V + T+L+R+ L Y G P+ A+ D F T+ P + L TANT +S L +
Sbjct: 323 WLPVNRETYLDRLALRYDREGEPSQLAAVDIFVS----TVDPLKEPPLVTANTVLSILAV 378
>gnl|CDD|236057 PRK07578, PRK07578, short chain dehydrogenase; Provisional.
Length = 199
Score = 30.2 bits (69), Expect = 1.2
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 78 VDSENKN-LTSLFSAIRAGIFD-VVPAS------CLENLTPEDFRLLLNG--VGDINVTV 127
VD + + +LF + G D VV A+ L +T EDF + L +G +N+ V
Sbjct: 38 VDITDPASIRALFEKV--GKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNL-V 94
Query: 128 LISIDMCTEEGGGSIELVPG 147
LI + GGS L G
Sbjct: 95 LIGQHYLND--GGSFTLTSG 112
>gnl|CDD|238176 cd00284, Cytochrome_b_N, Cytochrome b (N-terminus)/b6/petB:
Cytochrome b is a subunit of cytochrome bc1, an
11-subunit mitochondrial respiratory enzyme. Cytochrome
b spans the mitochondrial membrane with 8 transmembrane
helices (A-H) in eukaryotes. In plants and
cyanobacteria, cytochrome b6 is analogous to eukaryote
cytochrome b, containing two chains: helices A-D are
encoded by the petB gene and helices E-H are encoded by
the petD gene in these organisms. Cytochrome b/b6
contains two bound hemes and two ubiquinol/ubiquinone
binding sites. The C-terminal portion of cytochrome b
is described in a separate CD.
Length = 200
Score = 28.9 bits (65), Expect = 3.2
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 1 MFLTLFYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRH 47
L ++ + P I+ + N G +LG CL+ L +FL H
Sbjct: 1 PKLIEVNNSLIDLPPPS-NISYWWNFGSLLGTCLVIQILTGVFLAMH 46
>gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase.
Length = 1085
Score = 29.6 bits (66), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 311 WSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYI 370
W + + T+L+R+ L Y G P+ A D F T+ P + L TANT +S L +
Sbjct: 330 WYPINRETYLDRLALRYDRDGEPSQLAPVDVFVS----TVDPLKEPPLVTANTVLSILAV 385
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 28.7 bits (64), Expect = 6.2
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 311 WSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYI 370
W + + T+L+R+ + + G P A D F T+ P + + TANT +S L +
Sbjct: 261 WFPINRETYLDRLSMRFERDGEPNRLAPVDVFVS----TVDPLKEPPIITANTVLSILAV 316
>gnl|CDD|215556 PLN03064, PLN03064, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 934
Score = 28.6 bits (64), Expect = 8.1
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 155 SSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRP 206
+S V++Y KYA+ + Q + + + WTG P A+ D Q SV +RP
Sbjct: 716 TSLVWNY--KYADVEFGRLQARDMLQHLWTG-PISNAAVDVVQGSRSVEVRP 764
>gnl|CDD|200387 TIGR04136, rSAM_FibroRumin, radical SAM peptide maturase,
FibroRumin system. Members of this protein family are
radical SAM enzymes proposed to act on small, Cys-rich
peptides encoded by tandem gene pairs. Members occur in
enzymes Fibrobacter succinogenes subsp. succinogenes S85
(genes for their target peptides missed) and in
Ruminococcus albus 8. This enzyme family is similar in
sequence to the SCIFF (Six Cysteines in Forty-Five)
system maturase (TIGR03974).
Length = 458
Score = 28.4 bits (63), Expect = 8.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 13/44 (29%)
Query: 104 CLENLTPEDFRLLLNGV----------GDINVTVLISIDMCTEE 137
CLEN +F ++ NG+ D+ V++ ISID C E
Sbjct: 186 CLENA---EFSMVSNGLLLSEERIIELRDLGVSIAISIDGCDEA 226
>gnl|CDD|220926 pfam10988, DUF2807, Protein of unknown function (DUF2807). This
bacterial family of proteins shows structural similarity
to other pectin lyase families. Although structures from
this family align with acetyl-transferases, there is no
conservation of catalytic residues found. It is likely
that the function is one of cell-adhesion. In PDB:3jx8,
it is interesting to note that the sequence of contains
several well defined sequence repeats, centred around
GSG motifs defining the tight beta turn between the two
sheets of the super-helix; there are 8 such repeats in
the C-terminal half of the protein, which could be
grouped into 4 repeats of two. It seems likely that this
family belongs to the superfamily of trimeric
autotransporter adhesins (TAAs), which are important
virulence factors in Gram-negative pathogens. In the
case of Parabacteroides distasonis, which is a cmoponent
of the normal distal human gut microbiota, TAA-like
complexes probably modulate adherence to the host
(information derived from TOPSAN).
Length = 181
Score = 27.5 bits (62), Expect = 9.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 106 ENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSS 156
L ++ L ++G GDIN+ + + G G I+L +LE++ S
Sbjct: 82 GTLKADNLELSISGSGDINLDLDADNLDVSASGSGDIKLSGKADNLELSVS 132
>gnl|CDD|177102 MTH00016, CYTB, cytochrome b; Validated.
Length = 378
Score = 28.1 bits (63), Expect = 9.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 20 INAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAF 64
++ + N G +LGLCL+ L LFL+ H +I DLAF
Sbjct: 28 LSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHI--------DLAF 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.421
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,798,657
Number of extensions: 2070373
Number of successful extensions: 1569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1552
Number of HSP's successfully gapped: 33
Length of query: 395
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 296
Effective length of database: 6,546,556
Effective search space: 1937780576
Effective search space used: 1937780576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.8 bits)