RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12632
(395 letters)
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold,
ubiquitin ligase; 1.97A {Homo sapiens}
Length = 118
Score = 154 bits (392), Expect = 1e-46
Identities = 87/116 (75%), Positives = 101/116 (87%)
Query: 280 DINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASE 339
+V +LIS+TSF DESGE +E+L++FKRW WSIVEKM+ ER DLVYFWT SP+LPASE
Sbjct: 3 LGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASE 62
Query: 340 DGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFV 395
+GFQPMPS+TIRP DD HLPTANTCISRLY+PLYSS+ L+ KLLLAIKTKNFGFV
Sbjct: 63 EGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV 118
Score = 108 bits (273), Expect = 3e-29
Identities = 57/69 (82%), Positives = 63/69 (91%)
Query: 180 VYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLL 239
VYFWT SP+LPASE+GFQPMPS+TIRP DD HLPTANTCISRLY+PLYSS+ L+ KLLL
Sbjct: 49 VYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLL 108
Query: 240 AIKTKNFGF 248
AIKTKNFGF
Sbjct: 109 AIKTKNFGF 117
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE,
alternative splicing, chromosomal rearrangement,
cytoplasm, differentiation; 1.89A {Homo sapiens} PDB:
3g1n_A
Length = 405
Score = 99.2 bits (248), Expect = 3e-23
Identities = 67/303 (22%), Positives = 115/303 (37%), Gaps = 88/303 (29%)
Query: 13 SPASY---ERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVM 69
+P+S+ ++ F+ GRI+ + N L + R K+ILG+ +R+ D+ D
Sbjct: 125 NPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHF 184
Query: 70 YESLRQL------------------------------------VVDSENKN--------- 84
Y+ L L +V ENK
Sbjct: 185 YQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQM 244
Query: 85 -LTSL----FSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGG 139
+T +A G ++++P + T ++ LL++G+ I++ L S TE
Sbjct: 245 RMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKS---NTEYHK 301
Query: 140 GSIELVPGGRDLEVTSSNV----YDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDG 195
++S + +R F +A + F TG+ +P G
Sbjct: 302 YQ------------SNSIQIQWFWRALRS------FDQADRAKFLQFVTGTSKVPL--QG 341
Query: 196 F---QPMPSV---TIRPA--DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFG 247
F + M + I LP+A+TC ++L +P Y S LRH LLLAI+ + G
Sbjct: 342 FAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEG 401
Query: 248 FAI 250
F +
Sbjct: 402 FGL 404
Score = 96.9 bits (242), Expect = 2e-22
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 223 YIPLYSSRATLRHKLLLAIK--TKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD 280
Y+ L + ++ AI+ F G ++++P + T ++ LL++G+
Sbjct: 237 YVHLVC-----QMRMTGAIRKQLAAF----LEGFYEIIPKRLISIFTEQELELLISGLPT 287
Query: 281 INVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASED 340
I++ L S T + + I+ W W + +R + F TG+ +P
Sbjct: 288 IDIDDLKSNTEYHKYQ--SNSIQIQ---WFWRALRSFDQADRAKFLQFVTGTSKVPL--Q 340
Query: 341 GF---QPMPSV---TIRPA--DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNF 392
GF + M + I LP+A+TC ++L +P Y S LRH LLLAI+ +
Sbjct: 341 GFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASE 400
Query: 393 GF 394
GF
Sbjct: 401 GF 402
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 98.1 bits (245), Expect = 1e-22
Identities = 56/301 (18%), Positives = 104/301 (34%), Gaps = 87/301 (28%)
Query: 13 SPASY---ERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVM 69
+P S E +N F+ GR++GL + F + K +L + + D+ D +
Sbjct: 152 NPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEV 211
Query: 70 YESLRQL-----------------------------------VVDSENKN---------- 84
Y SL + V NK
Sbjct: 212 YNSLNWMLENSIDGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWR 271
Query: 85 LTSL----FSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGG 140
+ F A G +++P + + LL+ G+ +I++ T+ G
Sbjct: 272 IVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKK---HTDYRGY 328
Query: 141 SIELVPGGRDLEVTSSNV----YDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGF 196
S V + V + + ++ +A + F TG+ +P +GF
Sbjct: 329 Q------------ESDEVIQWFWKCVSE------WDNEQRARLLQFTTGTSRIPV--NGF 368
Query: 197 QPMPSV------TIRPADDA-HLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFA 249
+ + TI A + LP ++TC +R+ +P Y +++ KL LA+ + GF
Sbjct: 369 KDLQGSDGPRRFTIEKAGEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAV-EETIGFG 427
Query: 250 I 250
Sbjct: 428 Q 428
Score = 95.8 bits (239), Expect = 7e-22
Identities = 41/181 (22%), Positives = 84/181 (46%), Gaps = 26/181 (14%)
Query: 223 YIPLYSSRATLRHKLLLAIK--TKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD 280
Y+ LY+ + +++ ++ K F G +++P + + LL+ G+ +
Sbjct: 263 YVELYT-----QWRIVDRVQEQFKAF----MDGFNELIPEDLVTVFDERELELLIGGIAE 313
Query: 281 INVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASED 340
I++ +T + S+ +I+ W W V + + +R L+ F TG+ +P +
Sbjct: 314 IDIEDWKKHTDYRGYQ--ESDEVIQ---WFWKCVSEWDNEQRARLLQFTTGTSRIPV--N 366
Query: 341 GFQPMPSV------TIRPADDA-HLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFG 393
GF+ + TI A + LP ++TC +R+ +P Y +++ KL LA+ + G
Sbjct: 367 GFKDLQGSDGPRRFTIEKAGEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAV-EETIG 425
Query: 394 F 394
F
Sbjct: 426 F 426
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic
mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Length = 380
Score = 96.5 bits (241), Expect = 2e-22
Identities = 66/302 (21%), Positives = 105/302 (34%), Gaps = 88/302 (29%)
Query: 13 SPASY---ERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVM 69
+P S E ++ F GRI+G+ + K +LG+ I D+ DP +
Sbjct: 102 NPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDL 161
Query: 70 YESLRQL-----------------------------------VVDSENKN---------- 84
+ SL + V+ ENK
Sbjct: 162 HNSLVWILENDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWR 221
Query: 85 LTSL----FSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGG 140
F A++ G +V+P L+ ++ L++ G+G I+V T
Sbjct: 222 FLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKV---NTRLKHC 278
Query: 141 SIELVPGGRDLEVTSSNV----YDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGF 196
+ SN+ + V F + +A + F TGS +P GF
Sbjct: 279 T------------PDSNIVKWFWKAVEF------FDEERRARLLQFVTGSSRVPL--QGF 318
Query: 197 QPMPSV------TIRPA--DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGF 248
+ + TI +LP A+TC +R+ IP Y S L KLL AI + GF
Sbjct: 319 KALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAI-EETCGF 377
Query: 249 AI 250
A+
Sbjct: 378 AV 379
Score = 92.6 bits (231), Expect = 5e-21
Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 27/182 (14%)
Query: 223 YIPLYSSRATLRHKLLLAIK--TKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD 280
Y+ LY + L I+ + G +V+P L+ ++ L++ G+G
Sbjct: 213 YVRLYV-----NWRFLRGIEAQFLAL----QKGFNEVIPQHLLKTFDEKELELIICGLGK 263
Query: 281 INVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASED 340
I+V T + P ++K W W VE R L+ F TGS +P
Sbjct: 264 IDVNDWKVNTRL--KHCTPDSNIVK---WFWKAVEFFDEERRARLLQFVTGSSRVPL--Q 316
Query: 341 GFQPMPSV------TIRPA--DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNF 392
GF+ + TI +LP A+TC +R+ IP Y S L KLL AI +
Sbjct: 317 GFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAI-EETC 375
Query: 393 GF 394
GF
Sbjct: 376 GF 377
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta
protein (A + B), E3 ligase, HECT domain, UBL-
conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB:
3jvz_C 3jw0_C 2xbf_A 2xbb_A
Length = 392
Score = 96.9 bits (242), Expect = 2e-22
Identities = 58/299 (19%), Positives = 100/299 (33%), Gaps = 99/299 (33%)
Query: 13 SPASY----ERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPV 68
+P S + ++ F GR+ GL + +L F R K +LG+ I +D+ D
Sbjct: 121 NPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSE 180
Query: 69 MYESLRQL----------------------------------VVDSENKN---------- 84
Y SL+ + +V +ENK
Sbjct: 181 YYNSLKWILENDPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWR 240
Query: 85 LTSL----FSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGG 140
+ +A G +++P ++ + LL+ G+GD++V
Sbjct: 241 FVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVN-------------- 286
Query: 141 SIELVPGGRDLEVTSSNVYDYVRKYAET-----------RMFKSQVKAIEVYFWTGSPAL 189
D Y Y + ++ + + F TG+ +
Sbjct: 287 ---------DWR----QHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRV 333
Query: 190 PASEDGFQPMPS------VTIRPADDA-HLPTANTCISRLYIPLYSSRATLRHKLLLAI 241
P +GF + TI LP A+TC +RL +P Y + LR KLL+A+
Sbjct: 334 PM--NGFAELYGSNGPQLFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV 390
Score = 95.0 bits (237), Expect = 1e-21
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 24/174 (13%)
Query: 223 YIPLYSSRATLRHKLLLAIK--TKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD 280
YI L + + + ++ F G +++P ++ + LL+ G+GD
Sbjct: 232 YIDLVI-----QWRFVNRVQKQMNAF----LEGFTELLPIDLIKIFDENELELLMCGLGD 282
Query: 281 INVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASED 340
++V ++ + + P+ +I+ W W V M +R+ L+ F TG+ +P +
Sbjct: 283 VDVNDWRQHSIYKNGY-CPNHPVIQ---WFWKAVLLMDAEKRIRLLQFVTGTSRVPM--N 336
Query: 341 GFQPMPS------VTIRPADDA-HLPTANTCISRLYIPLYSSRATLRHKLLLAI 387
GF + TI LP A+TC +RL +P Y + LR KLL+A+
Sbjct: 337 GFAELYGSNGPQLFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV 390
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 96.1 bits (240), Expect = 3e-22
Identities = 68/303 (22%), Positives = 103/303 (33%), Gaps = 97/303 (32%)
Query: 13 SPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYES 72
+P+S+E F G +LGL + N + + V + ++G+ F DL PV+Y+S
Sbjct: 85 NPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQS 144
Query: 73 LRQL--------------------------------------VVDSENKN---------- 84
L+ L + +EN+
Sbjct: 145 LKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYI 204
Query: 85 LTSL----FSAIRAGIFDVVPASCLENL-TPEDFRLLLNGVGDINVTVLISIDMCTEEGG 139
L F A R G V S L+ L PE+ LL+ G +++
Sbjct: 205 LNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQ------------- 251
Query: 140 GSIELVPGGRDLEVTSSNVYDYVRKYAET----RMFKSQVKAIEV-------YFWTGSPA 188
LE +Y Y R F V + F TG+
Sbjct: 252 ----------ALE----ETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDR 297
Query: 189 LPASEDGFQPMPSVTIRPA--DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIK-TKN 245
P G + + I D LPT++TC + L +P YSS+ L+ +LL AI K
Sbjct: 298 APV--GGLGKLK-MIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG 354
Query: 246 FGF 248
FG
Sbjct: 355 FGM 357
Score = 95.7 bits (239), Expect = 3e-22
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 223 YIPLYSSRATLRHKLLLAIK--TKNFGFAIRAGIFDVVPASCLENL-TPEDFRLLLNGVG 279
++ LYS + L +++ K F R G V S L+ L PE+ LL+ G
Sbjct: 196 FVNLYS-----DYILNKSVEKQFKAF----RRGFHMVTNESPLKYLFRPEEIELLICGSR 246
Query: 280 DINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASE 339
+++ L T + D LI R W IV T ++ + F TG+ P
Sbjct: 247 NLDFQALEETTEY-DGGYTRDSVLI---REFWEIVHSFTDEQKRLFLQFTTGTDRAPV-- 300
Query: 340 DGFQPMPSVTIRPA--DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIK-TKNFGFV 395
G + + I D LPT++TC + L +P YSS+ L+ +LL AI K FG +
Sbjct: 301 GGLGKLK-MIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 358
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1;
2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Length = 374
Score = 95.7 bits (239), Expect = 4e-22
Identities = 55/293 (18%), Positives = 98/293 (33%), Gaps = 87/293 (29%)
Query: 13 SPASY---ERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVM 69
+PAS + ++ F GR + + L + + K +L + + DL D
Sbjct: 101 NPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF 160
Query: 70 YESLRQL------------------------------------VVDSENKN--------- 84
Y SL + +V ENK+
Sbjct: 161 YNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEW 220
Query: 85 -LTSL----FSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGG 139
+ A G +VVP L+ ++ ++L G+ ++++ T
Sbjct: 221 RFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQR---NTVYRH 277
Query: 140 GSIELVPGGRDLEVTSSNV----YDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDG 195
+ +S + +V++ ++V+ + F TG+ LP G
Sbjct: 278 YT------------RNSKQIIWFWQFVKE------TDNEVRMRLLQFVTGTCRLPL--GG 317
Query: 196 FQPMPSV------TIRPA-DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAI 241
F + I D LP ++TC +RL +P Y S L+ KLL AI
Sbjct: 318 FAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAI 370
Score = 94.2 bits (235), Expect = 1e-21
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 25/174 (14%)
Query: 223 YIPLYSSRATLRHKLLLAIK--TKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD 280
YI L + + ++ TK F G +VVP L+ ++ ++L G+ +
Sbjct: 213 YIGLMT-----EWRFSRGVQEQTKAF----LDGFNEVVPLQWLQYFDEKELEVMLCGMQE 263
Query: 281 INVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASED 340
+++ T + + + + I W W V++ + RM L+ F TG+ LP
Sbjct: 264 VDLADWQRNTVYRHYT--RNSKQII---WFWQFVKETDNEVRMRLLQFVTGTCRLPL--G 316
Query: 341 GFQPMPSV------TIRPA-DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAI 387
GF + I D LP ++TC +RL +P Y S L+ KLL AI
Sbjct: 317 GFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAI 370
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.7 bits (170), Expect = 6e-13
Identities = 91/517 (17%), Positives = 136/517 (26%), Gaps = 247/517 (47%)
Query: 2 FLTLFYSASLCSP---ASYERI-----NAFRNTGRILG--------LCLLQNELCPLFLN 45
FL Y +SL P ++++ F N L LLQ L
Sbjct: 64 FLG--YVSSLVEPSKVGQFDQVLNLCLTEFENC--YLEGNDIHALAAKLLQENDTTLVKT 119
Query: 46 RHVIK-Y-----ILGRPI-RFHDLAFFDPV-----------------------------M 69
+ +IK Y + RP + + A F V
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 70 YESLRQLVVDSENKNLTSL------FSAIRAGIFDV------------------VPASC- 104
Y L ++ + L+ L + ++ +P SC
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 105 ---------------LENLTPEDFRLLLNGV----GDINVTVLISIDMCTEEGGGSIELV 145
L TP + R L G + V I+ S E
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA-------ETDSWE-- 290
Query: 146 PGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGS------P--ALPAS----- 192
F S KAI V F+ G P +LP S
Sbjct: 291 -----------------------SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 193 -EDGFQ---PMPSVT----------IRPADDAHLPTANTCISRLYIPLYSSRATLRHKLL 238
E+ PM S++ + ++HLP ++ I L +
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVN-KTNSHLPAG----KQVEISLVNGA-------- 374
Query: 239 LAIKTKNFGFAIRAGIFDVV--PASCLENLTPEDFRLLLNGVGDINVTVL--ISYTSFID 294
KN VV P L L L S +D
Sbjct: 375 -----KNL----------VVSGPPQSLYGL----------------NLTLRKAKAPSGLD 403
Query: 295 ESGEP-SERLIKF-KRWLWSIVEKMT---HLERMDLVYFWTGSPAL-PASEDGFQ--PMP 346
+S P SER +KF R+L + H S L PAS+ +
Sbjct: 404 QSRIPFSERKLKFSNRFL-----PVASPFH------------SHLLVPASDLINKDLVKN 446
Query: 347 SVTIRPADDAHLPTANTCISRLYIPLYSSR--ATLRH 381
+V+ D + IP+Y + + LR
Sbjct: 447 NVSFNAKD-------------IQIPVYDTFDGSDLRV 470
Score = 57.8 bits (139), Expect = 4e-09
Identities = 66/430 (15%), Positives = 114/430 (26%), Gaps = 157/430 (36%)
Query: 41 PLFLNRHVIKYILGRPIRFHDLA-----FFDPVMYESLRQLVVDSENKNLTSLFSAIRAG 95
PL L+ ++++L P +A F+ ++ E D E L
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 96 IFDVVPASCLENLTPEDF-RLLLNGVGDINVTVLISIDMCTEEGGGSI-----ELVPGGR 149
+ +S +E F ++L + + L G I +L+
Sbjct: 68 V-----SSLVEPSKVGQFDQVLNLCLTEFENCYL---------EGNDIHALAAKLLQ--- 110
Query: 150 DLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADD 209
+ + T + ++ Y R+ + + + S A +G +
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKK----SNSALFRAVGEG-------------N 153
Query: 210 AHLPT-------ANTCISRL------YIPL-----YSSRATLRHKLLLAIKTKNF---GF 248
A L + L Y L S TL + + + G
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 249 AIRA-----------GIFDVVPASC----------------LENLTPEDFRLLLNGV--- 278
I +P SC L TP + R L G
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 279 -GDINVTVLI----SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGS- 332
+ V I S+ SF K L F+ G
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSV-------RKAITVL-----------------FFIGVR 309
Query: 333 -----P--ALPAS------EDGFQ---PMPSVT----------IRPADDAHLPTANTCIS 366
P +LP S E+ PM S++ + ++HLP
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-KTNSHLPAG----K 364
Query: 367 RLYIPLYSSR 376
++ I L +
Sbjct: 365 QVEISLVNGA 374
Score = 48.5 bits (115), Expect = 3e-06
Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 47/181 (25%)
Query: 20 INAFRN---TGRILGLCLLQNEL----CPLFLNRHVIKYILGRPIRFHDLAFFDPV---- 68
+N +N +G L L L P L++ I + R ++F F PV
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-SERKLKFS--NRFLPVASPF 427
Query: 69 ----MYESLRQLVVDSENKNLTSLFSAIRAGIFD--------VVPASCLENLTPEDFRLL 116
+ + + D N++ I+ ++D V+ S E + RL
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 117 LN---------------GVGDIN-VTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYD 160
+ G G + + VL ++G G + ++ G L++ + Y
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLGVLTHR---NKDGTG-VRVIVAG-TLDINPDDDYG 542
Query: 161 Y 161
+
Sbjct: 543 F 543
Score = 30.8 bits (69), Expect = 0.94
Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 65/164 (39%)
Query: 279 GDINVTVLISYTSFI-----------------------DESGEPSERLIKFKRWLWSIVE 315
G + +L+ SF DE P+E + KF ++ S+VE
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 316 K-----MTHLERMDLVYFWTGSPALPASEDGFQPMPS-------VTIRPADDAHLPTANT 363
+ + L F E+ + + + +D L
Sbjct: 74 PSKVGQFDQVLNLCLTEF----------ENCY--LEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 364 CISRLYIPLYSSRATLRHK--------LLLAIKTKN------FG 393
I + Y ++R + L A+ N FG
Sbjct: 122 LI-KNY---ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 2e-09
Identities = 52/346 (15%), Positives = 106/346 (30%), Gaps = 104/346 (30%)
Query: 29 ILGLCL------LQNELC---PLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVD 79
+L L L E+ P L+ I+ IR +++ + +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLS------IIAESIRDG------LATWDNWKHV--- 350
Query: 80 SENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVG----DINVTV-LISI--- 131
LT++ S L L P ++R + + + ++ L+S+
Sbjct: 351 -NCDKLTTIIE------------SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 132 DMCTEEGGGSI-ELVPGG---RDLEVTSSNVYDYVRKYAETRMFKSQV--KAIEVYFWTG 185
D+ + + +L + + ++ ++ + + + ++ Y
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY---- 453
Query: 186 SPALPASEDGFQPMPSVTIRPADDA--------HLPTANTCISRLYIPLYSSRATLRHKL 237
+P + D +P P D HL + R TL +
Sbjct: 454 --NIPKTFDSDDLIP-----PYLDQYFYSHIGHHLKNIE----------HPERMTLFRMV 496
Query: 238 LLAIKTKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG 297
L +F F + I A +LN + L Y +I ++
Sbjct: 497 FL-----DFRF-LEQKIRHDSTAWNASG-------SILNTLQQ-----LKFYKPYICDND 538
Query: 298 EPSERLIK-FKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGF 342
ERL+ +L I E + + DL+ AL A ++
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRI-----ALMAEDEAI 579
Score = 42.5 bits (99), Expect = 2e-04
Identities = 55/439 (12%), Positives = 124/439 (28%), Gaps = 136/439 (30%)
Query: 44 LNRHVIKYILGRPIRFHDLAF-FDPVMY---ESLRQLVVDSENKNLTSLFSAI------- 92
L++ I +I+ F ++ E +++ V + N L S I
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 93 ----------RAGIFDVVPA----------------SCLENLTPEDFRLLLNGVGDINVT 126
R +++ L L P +L++GV T
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKT 164
Query: 127 VLISIDMCTEEGGGSIELVPGGRDLEVTSS---NVYDYVRKYAETRMFKSQVKAIEVYFW 183
+ +D+C +V ++ ++ ++ ++ ++ +
Sbjct: 165 WVA-LDVC--------------LSYKVQCKMDFKIF-WL-NLKNCNSPETVLEMLQKLLY 207
Query: 184 TGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLL-LA-I 241
P + D + + + + RL + LL L +
Sbjct: 208 QIDPNWTSRSDHSSNIKL---------RIHSIQAELRRLL-----KSKPYENCLLVLLNV 253
Query: 242 KTKN----FGFAIR-------AGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYT 290
+ F + + + D + A+ +++ + + L D ++L+ Y
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--PDEVKSLLLKYL 311
Query: 291 SFIDESGEPSE-------------RLIK-----FKRWLWSIVEKMTHLERMDLVYFWTGS 332
P E I+ + W +K+T + L
Sbjct: 312 D-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL------- 363
Query: 333 PALPASEDGFQPM-PSVTIRPADDAHLPT------------------ANTCISRLYIPLY 373
L +E ++ M +++ P AH+PT N +
Sbjct: 364 NVLEPAE--YRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 374 SSRATLR-HKLLLAIKTKN 391
+T+ + L +K K
Sbjct: 421 PKESTISIPSIYLELKVKL 439
>1r8n_A STI, kunitz trypsin inhibitor; kunitz-type trypsin/kallikrein
inhibitor, beta-trefoil fold, flamboyant, hydrolase
inhibitor; 1.75A {Delonix regia} SCOP: b.42.4.1
Length = 185
Score = 30.0 bits (67), Expect = 0.94
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 27 GRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYES 72
G + + +CP+ + + +G P+RF +Y
Sbjct: 31 GGGVRPGRTRGSMCPMSIIQEQSDLQMGLPVRFSSPEEKQGKIYTD 76
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.3
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 172 KSQVKAIE----VYFWTGSPAL 189
K +K ++ +Y +PAL
Sbjct: 19 KQALKKLQASLKLYADDSAPAL 40
>3e8l_C Serine proteinase inhibitor A; beta-trefoil fold, protease
inhibitor, complex, DIG hydrolase, metal-binding,
protease, secreted; 2.48A {Sagittaria sagittifolia}
Length = 185
Score = 28.9 bits (64), Expect = 2.0
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 26 TGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYES 72
G GL L+ + C ++ + G P+ F A PVM
Sbjct: 37 IGFRGGLSTLRKDACKSYVYEAP-ETDRGLPVGFSASATSQPVMQLG 82
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller,
glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB:
4e8c_A
Length = 595
Score = 29.7 bits (66), Expect = 2.0
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 275 LNGVGDINVTVLISYTSF-----IDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFW 329
+NG L TS+ +DE G P+ + + K+ + + + LE +
Sbjct: 286 MNGCSARGTLDLPQVTSYDYDALLDEEGNPTAKYLAVKKMMATHFSEYPQLEPLYKESME 345
Query: 330 TGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSR 376
+ L F+ + S++ P + + LY +
Sbjct: 346 LDAIPLVEKVSLFETLDSLS-SPVESLYPQKMEELGQSYGYLLYRTE 391
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 28.8 bits (65), Expect = 2.8
Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 52 ILGRPIRFHDLAFFDPVMYESLRQLVVDSENKN-LTSLFSAIRAGIFDVVPASCLENLT- 109
+ G+ + ++ L V +++ AI G + L+ L
Sbjct: 216 VSGKKVVHQPVS--FEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKT-SDDLQKLIG 272
Query: 110 -PEDFR 114
+
Sbjct: 273 SLTPLK 278
>3pet_A Putative adhesin; right-handed beta-helix, structural genomics,
joint center F structural genomics, JCSG; HET: PG4;
2.07A {Bacteroides fragilis nctc 9343}
Length = 221
Score = 28.4 bits (63), Expect = 3.2
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 11/115 (9%)
Query: 48 VIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASC--- 104
+ + +R + +L + + + + D+
Sbjct: 66 FLSIDKSKKVRNFKKMKIT-ITSPTLNGISFKGVGDV--HIENGLTTDNLDIESKGVGNV 122
Query: 105 -LENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNV 158
+++LT + + GVGD+ + I +G G+IE +L +
Sbjct: 123 DIQSLTCQKLNVQSMGVGDVKLEGTAQIAALHSKGVGNIE----AGNLRANAVEA 173
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 28.4 bits (64), Expect = 3.5
Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 7/67 (10%)
Query: 52 ILGRPIRFHDLAFFDPVMYESLRQLVVDSENKN-LTSLFSAIRAGIFDVVPASCLENLT- 109
G+ + + +L+ + +L+ + + + L G + L L
Sbjct: 212 QSGKQVTYQNLS--EADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKT-LSKLIG 268
Query: 110 --PEDFR 114
Sbjct: 269 HPTTTLA 275
>1bo4_A Protein (serratia marcescens aminoglycoside-3-N-
acetyltransferase); eubacterial aminoglyco resistance,
GCN5-related N-acetyltransferase; HET: SPD COA; 2.30A
{Serratia marcescens} SCOP: d.108.1.1
Length = 168
Score = 27.9 bits (62), Expect = 3.7
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 184 TGSPALPASEDGFQPMPSVTIRPADDAHLP 213
T + P ++ G M + +
Sbjct: 9 TQQGSRPKTKLGGSSMGIIRTCRLGPDQVK 38
Score = 27.9 bits (62), Expect = 3.7
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 330 TGSPALPASEDGFQPMPSVTIRPADDAHLP 359
T + P ++ G M + +
Sbjct: 9 TQQGSRPKTKLGGSSMGIIRTCRLGPDQVK 38
>1r8o_A STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor,
beta-trefoil fold, hydrolase inhibitor; 1.83A
{Copaifera langsdorffii} SCOP: b.42.4.1
Length = 96
Score = 26.8 bits (59), Expect = 4.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 20 INAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRF 59
+ + R G L L E CPL + + + G P+RF
Sbjct: 20 LPSVRGKGGGLVLAKSGGEKCPLSVVQSPSELSNGLPVRF 59
>2dre_A Water-soluble chlorophyll protein; beta-trefoil, tetramer, plant,
singlet oxygen, photooxidation, chlorophyll carrier;
HET: CLA; 2.00A {Lepidium virginicum}
Length = 180
Score = 27.4 bits (60), Expect = 5.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 25 NTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFH 60
N G ++ + + LCPL + R + Y G P+
Sbjct: 30 NGGGLVPANVDLSHLCPLGIVRTSLPYQPGLPVTIS 65
>1tie_A Erythrina trypsin inhibitor; proteinase inhibitor (trypsin);
2.50A {Erythrina caffra} SCOP: b.42.4.1
Length = 172
Score = 27.3 bits (60), Expect = 6.8
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 15 ASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRF 59
+Y + G + L E CPL + + + G+PIR
Sbjct: 14 GTYYLLPQVWAQGGGVQLAKTGEETCPLTVVQSPNELSDGKPIRI 58
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 27.4 bits (62), Expect = 7.0
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 15/57 (26%)
Query: 94 AGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCT--------EEGGGSI 142
AGI A L E F ++ +NV I + +G G I
Sbjct: 88 AGITGNSEAGVLHTTPVEQFDKVM----AVNVR---GIFLGCRAVLPHMLLQGAGVI 137
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 27.9 bits (63), Expect = 7.3
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 153 VTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASE---DGFQPMPSVTIRPADD 209
V S +Y+ + E K+ V+ + V G SE G + +V + P +D
Sbjct: 129 VVHSMLYENFKPVLE----KTGVERVFV---VGGEVNSLSEVMDSGSEDFENVKVNPEED 181
Query: 210 -AHLP 213
A +P
Sbjct: 182 VALIP 186
>3exn_A Probable acetyltransferase; GCN5-related N-acetyltransferase, MCSG,
P structural genomics, protein structure initiative;
HET: ACO; 1.80A {Thermus thermophilus}
Length = 160
Score = 27.0 bits (60), Expect = 7.8
Identities = 3/26 (11%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 198 PMPSVTIRPADDAHLPTANTCISRLY 223
+ ++ + P P + R++
Sbjct: 8 HVLTLDLAPVTPKDAPL----LHRVF 29
Score = 27.0 bits (60), Expect = 7.8
Identities = 3/26 (11%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 344 PMPSVTIRPADDAHLPTANTCISRLY 369
+ ++ + P P + R++
Sbjct: 8 HVLTLDLAPVTPKDAPL----LHRVF 29
>1avw_B STI, trypsin inhibitor; complex (proteinase/inhibitor), porcine
trypsin, soybean trypsin inhibitor, kunitz-type,
beta-trefoil fold; 1.75A {Glycine max} SCOP: b.42.4.1
PDB: 1avx_B 1avu_A 1ba7_A
Length = 177
Score = 26.9 bits (59), Expect = 9.5
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 15 ASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRF 59
+Y ++ G + NE CPL + + + G
Sbjct: 15 GTYYILSDITAFGG-IRAAPTGNERCPLTVVQSRNELDKGIGTII 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.421
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,182,957
Number of extensions: 383130
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 749
Number of HSP's successfully gapped: 59
Length of query: 395
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 299
Effective length of database: 4,021,377
Effective search space: 1202391723
Effective search space used: 1202391723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.6 bits)