RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12632
(395 letters)
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 104 bits (260), Expect = 9e-26
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 248 FAIRAGIFDVVPASCLENL-TPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKF 306
A R G V S L+ L PE+ LL+ G +++ L T + S
Sbjct: 212 KAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDS----VL 267
Query: 307 KRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIR-PADDAHLPTANTCI 365
R W IV T ++ + F TG+ P G + + + D LPT++TC
Sbjct: 268 IREFWEIVHSFTDEQKRLFLQFTTGTDRAPVG--GLGKLKMIIAKNGPDTERLPTSHTCF 325
Query: 366 SRLYIPLYSSRATLRHKLLLAI 387
+ L +P YSS+ L+ +LL AI
Sbjct: 326 NVLLLPEYSSKEKLKERLLKAI 347
Score = 98.3 bits (244), Expect = 1e-23
Identities = 64/284 (22%), Positives = 105/284 (36%), Gaps = 72/284 (25%)
Query: 12 CSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYE 71
+P+S+E F G +LGL + N + + V + ++G+ F DL PV+Y+
Sbjct: 82 FNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQ 141
Query: 72 SLRQLV--------------------------------------VDSENKN--------- 84
SL+ L+ + +EN+
Sbjct: 142 SLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDY 201
Query: 85 -----LTSLFSAIRAGIFDVVPASCLENL-TPEDFRLLLNGVGDINVTVLISIDMCTEEG 138
+ F A R G V S L+ L PE+ LL+ G +++ L TE
Sbjct: 202 ILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEE---TTEYD 258
Query: 139 GGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQP 198
GG S + + F + K + + F TG+ P G
Sbjct: 259 GGYTR-----------DSVLIREFWEIVH--SFTDEQKRLFLQFTTGTDRAPVG--GLGK 303
Query: 199 MPSVTIR-PADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAI 241
+ + + D LPT++TC + L +P YSS+ L+ +LL AI
Sbjct: 304 LKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAI 347
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 374
Score = 104 bits (261), Expect = 9e-26
Identities = 50/286 (17%), Positives = 93/286 (32%), Gaps = 72/286 (25%)
Query: 12 CSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYE 71
S + + ++ F GR + + L + + K +L + + DL D Y
Sbjct: 103 ASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYN 162
Query: 72 SLRQL------------------------------------VVDSENKN----------- 84
SL + +V ENK+
Sbjct: 163 SLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRF 222
Query: 85 ---LTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGS 141
+ A G +VVP L+ ++ ++L G+ ++++ +
Sbjct: 223 SRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVY------- 275
Query: 142 IELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPAS-----EDGF 196
R S + + + + ++V+ + F TG+ LP
Sbjct: 276 -------RHYTRNSKQIIWFWQ---FVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSN 325
Query: 197 QPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIK 242
P + D LP ++TC +RL +P Y S L+ KLL AI+
Sbjct: 326 GPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIE 371
Score = 104 bits (261), Expect = 1e-25
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 10/150 (6%)
Query: 244 KNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERL 303
+ A G +VVP L+ ++ ++L G+ ++++ T + + +
Sbjct: 227 QEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQ-- 284
Query: 304 IKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPAS-----EDGFQPMPSVTIRPADDAHL 358
W W V++ + RM L+ F TG+ LP P + D L
Sbjct: 285 ---IIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDTWL 341
Query: 359 PTANTCISRLYIPLYSSRATLRHKLLLAIK 388
P ++TC +RL +P Y S L+ KLL AI+
Sbjct: 342 PRSHTCFNRLDLPPYKSYEQLKEKLLFAIE 371
>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 321
Score = 28.9 bits (65), Expect = 1.0
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 29 ILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAF-FDPVMYESLRQLV 77
+ G LL N +C FLN YI+ + + L + + YE L+ L+
Sbjct: 57 VAGW-LLGNPMCDEFLNVPEWSYIVEKDNPVNGLCYPENFNDYEELKHLL 105
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 89
Score = 26.8 bits (59), Expect = 1.5
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 131 IDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETR 169
+ + G S++ + DL + + +++ KY
Sbjct: 15 VALYENSDGASLQQI--ANDLGINRVTLKNWIIKYGSNH 51
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA
topoisomerase I, catalytic core {Human (Homo sapiens)
[TaxId: 9606]}
Length = 263
Score = 28.3 bits (63), Expect = 1.5
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 24 RNTGRILGLCLLQNE------LCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLV 77
T +G C L+ E ++ IR+++ + ++++L+ +
Sbjct: 66 GETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFM 125
Query: 78 VDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFR 114
+ + ++ LF + GI + +E LT + FR
Sbjct: 126 ENKQPEDD--LFDRLNTGILNKHLQDLMEGLTAKVFR 160
>d1lm7a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 240
Score = 28.0 bits (62), Expect = 1.8
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 64 FFDPVMYESLRQL------VVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLL 117
E L D E N+ SLF A+ + + + + ++
Sbjct: 112 LVGIEFKEKLLSAERAVTGYNDPETGNIISLFQAMNKELIEKG-----HGIRLLEAQIAT 166
Query: 118 NGVGDINVTVLISIDMCTEEG 138
G+ D + + +D+ + G
Sbjct: 167 GGIIDPKESHRLPVDIAYKRG 187
>d2eiaa2 a.73.1.1 (A:17-147) EIAV capsid protein p26 {Equine
infectious anemia virus [TaxId: 11665]}
Length = 131
Score = 26.3 bits (58), Expect = 4.2
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 106 ENLTPEDFRLLLNGVGD 122
+ T E+ L+ V
Sbjct: 30 VDCTSEEMNAFLDVVPG 46
Score = 26.3 bits (58), Expect = 4.2
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 264 ENLTPEDFRLLLNGVGD 280
+ T E+ L+ V
Sbjct: 30 VDCTSEEMNAFLDVVPG 46
>d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 26.1 bits (57), Expect = 6.0
Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 11/81 (13%)
Query: 64 FFDPVMYESLRQL------VVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLL 117
D M L+ + K S A++ +F+ L
Sbjct: 64 VIDQDMATRLKPAQKAFIGFEGVKGKKKMSAAEAVKEKWLPY-----EAGQRFLEFQYLT 118
Query: 118 NGVGDINVTVLISIDMCTEEG 138
G+ D V IS + +G
Sbjct: 119 GGLVDPEVHGRISTEEAIRKG 139
>g1r8o.1 b.42.4.1 (A:,B:) Two-chain trypsin inhibitor {Balsam
copaiba (Copaifera langsdorffii) [TaxId: 280048]}
Length = 167
Score = 25.2 bits (55), Expect = 9.8
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 15 ASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYES 72
A Y + + R G L L E CPL + + + G P+RF + +
Sbjct: 15 AEYYILPSVRGKGGGLVLAKSGGEKCPLSVVQSPSELSNGLPVRFK-ASPRSKYISVG 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.421
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,514,479
Number of extensions: 74289
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 14
Length of query: 395
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,213,086
Effective search space: 373630488
Effective search space used: 373630488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.8 bits)