Query psy12635
Match_columns 198
No_of_seqs 116 out of 1074
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 15:40:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02288 mannose-6-phosphate i 100.0 5.1E-50 1.1E-54 360.2 16.3 186 1-186 2-287 (394)
2 PRK15131 mannose-6-phosphate i 100.0 9.6E-50 2.1E-54 358.6 15.8 180 1-187 2-274 (389)
3 KOG2757|consensus 100.0 4.9E-48 1.1E-52 337.6 10.0 183 1-186 2-284 (411)
4 COG1482 ManA Phosphomannose is 100.0 3.7E-47 7.9E-52 330.8 12.4 168 1-186 4-194 (312)
5 TIGR00218 manA mannose-6-phosp 100.0 1.6E-45 3.5E-50 321.5 10.9 165 1-186 2-187 (302)
6 PF01238 PMI_typeI: Phosphoman 100.0 9.3E-46 2E-50 331.5 6.0 181 1-186 2-286 (373)
7 PF01050 MannoseP_isomer: Mann 96.3 0.01 2.2E-07 47.3 5.8 67 88-182 63-139 (151)
8 COG4101 Predicted mannose-6-ph 95.8 0.0064 1.4E-07 46.8 2.2 37 148-184 86-125 (142)
9 COG0662 {ManC} Mannose-6-phosp 94.8 0.027 5.9E-07 43.1 3.0 62 84-173 34-98 (127)
10 PF07883 Cupin_2: Cupin domain 94.7 0.02 4.4E-07 38.3 1.9 22 151-172 38-59 (71)
11 COG1917 Uncharacterized conser 93.5 0.057 1.2E-06 41.1 2.4 63 85-173 42-105 (131)
12 PF02373 JmjC: JmjC domain, hy 93.0 0.066 1.4E-06 39.2 2.0 29 149-177 80-109 (114)
13 TIGR03037 anthran_nbaC 3-hydro 92.5 0.18 3.9E-06 40.6 4.0 31 150-180 70-103 (159)
14 PF02311 AraC_binding: AraC-li 92.3 0.11 2.5E-06 38.0 2.6 25 150-174 41-65 (136)
15 PRK13290 ectC L-ectoine syntha 91.6 0.17 3.7E-06 39.0 2.9 23 151-173 76-98 (125)
16 TIGR03214 ura-cupin putative a 91.3 0.19 4.1E-06 43.3 3.0 23 151-173 219-241 (260)
17 PRK13264 3-hydroxyanthranilate 91.0 0.32 7E-06 39.8 4.0 96 60-180 6-109 (177)
18 PF08007 Cupin_4: Cupin superf 90.7 0.14 3.1E-06 45.2 1.9 25 149-173 175-199 (319)
19 PF06052 3-HAO: 3-hydroxyanthr 90.1 0.33 7.2E-06 38.7 3.2 31 150-180 75-108 (151)
20 PRK09943 DNA-binding transcrip 89.7 0.32 6.8E-06 39.3 2.9 23 150-172 146-168 (185)
21 PF00190 Cupin_1: Cupin; Inte 89.2 0.19 4.2E-06 38.9 1.3 21 153-173 87-107 (144)
22 PF13621 Cupin_8: Cupin-like d 88.9 0.26 5.6E-06 40.6 2.0 26 148-173 207-232 (251)
23 PF03079 ARD: ARD/ARD' family; 88.5 0.28 6.1E-06 39.3 1.8 25 149-173 114-138 (157)
24 KOG2107|consensus 87.1 0.41 9E-06 38.8 2.0 22 150-171 116-137 (179)
25 PRK04190 glucose-6-phosphate i 86.5 0.66 1.4E-05 38.4 2.9 21 151-171 121-141 (191)
26 smart00835 Cupin_1 Cupin. This 86.4 0.64 1.4E-05 36.0 2.7 22 151-172 76-97 (146)
27 PRK15457 ethanolamine utilizat 84.9 0.94 2E-05 38.6 3.2 24 149-172 192-215 (233)
28 PRK13500 transcriptional activ 82.4 1.4 3E-05 38.4 3.3 23 151-173 87-109 (312)
29 PRK15460 cpsB mannose-1-phosph 81.5 2.1 4.6E-05 40.1 4.4 20 152-171 426-445 (478)
30 PF12852 Cupin_6: Cupin 81.3 1.5 3.3E-05 35.1 3.0 24 151-174 56-79 (186)
31 TIGR01479 GMP_PMI mannose-1-ph 79.7 1.6 3.5E-05 40.6 3.0 22 151-172 416-437 (468)
32 COG4297 Uncharacterized protei 79.5 1.4 3.1E-05 34.9 2.1 23 151-173 86-108 (163)
33 PF05899 Cupin_3: Protein of u 79.3 1 2.2E-05 31.2 1.1 16 151-166 45-60 (74)
34 TIGR03214 ura-cupin putative a 77.8 2.2 4.8E-05 36.7 3.0 19 152-170 100-118 (260)
35 PRK10572 DNA-binding transcrip 77.7 2.2 4.8E-05 36.3 3.0 22 151-172 68-89 (290)
36 TIGR03404 bicupin_oxalic bicup 76.3 1.9 4.1E-05 39.0 2.3 20 153-172 113-132 (367)
37 PRK13501 transcriptional activ 75.7 2.1 4.6E-05 36.6 2.4 23 150-172 56-78 (290)
38 PRK13502 transcriptional activ 75.2 2.3 5.1E-05 36.0 2.5 22 151-172 57-78 (282)
39 TIGR03404 bicupin_oxalic bicup 75.0 2.7 5.9E-05 38.0 3.0 21 151-171 290-310 (367)
40 PRK11171 hypothetical protein; 74.2 3 6.4E-05 36.0 2.9 22 151-172 224-245 (266)
41 PRK11171 hypothetical protein; 74.2 3.2 6.9E-05 35.8 3.1 21 151-171 102-122 (266)
42 PRK10296 DNA-binding transcrip 74.1 2.8 6E-05 35.5 2.6 20 151-170 62-81 (278)
43 COG3450 Predicted enzyme of th 74.0 2.8 6.1E-05 32.0 2.4 18 150-167 82-99 (116)
44 COG3822 ABC-type sugar transpo 73.8 4.4 9.6E-05 33.8 3.6 25 150-174 153-177 (225)
45 KOG1356|consensus 72.8 3 6.6E-05 41.5 2.8 37 127-171 784-820 (889)
46 PF06560 GPI: Glucose-6-phosph 70.7 3.2 6.9E-05 34.1 2.2 23 150-172 110-132 (182)
47 TIGR02297 HpaA 4-hydroxyphenyl 69.7 3.6 7.8E-05 34.8 2.4 22 151-172 63-84 (287)
48 COG2850 Uncharacterized conser 69.2 2.7 5.8E-05 38.2 1.5 22 152-173 181-202 (383)
49 PRK13503 transcriptional activ 68.7 2.8 6E-05 35.3 1.5 22 151-172 54-75 (278)
50 PLN00212 glutelin; Provisional 66.5 3.8 8.2E-05 38.7 2.0 20 152-171 150-169 (493)
51 PF06249 EutQ: Ethanolamine ut 66.2 3.9 8.4E-05 32.7 1.7 21 150-170 113-133 (152)
52 COG2140 Thermophilic glucose-6 62.4 7.7 0.00017 32.6 2.9 23 149-171 125-147 (209)
53 PRK10371 DNA-binding transcrip 61.7 6 0.00013 34.4 2.3 22 151-172 65-86 (302)
54 PF12973 Cupin_7: ChrR Cupin-l 61.3 6.7 0.00014 27.8 2.1 22 155-176 63-85 (91)
55 PF07385 DUF1498: Protein of u 61.0 8.4 0.00018 32.7 2.9 43 149-191 153-203 (225)
56 KOG3706|consensus 60.5 5.2 0.00011 37.8 1.7 22 149-170 380-401 (629)
57 TIGR01221 rmlC dTDP-4-dehydror 53.4 23 0.00049 28.8 4.2 41 152-192 100-141 (176)
58 PF05941 Chordopox_A20R: Chord 53.2 13 0.00029 33.3 3.0 30 151-180 68-99 (334)
59 PF00908 dTDP_sugar_isom: dTDP 50.6 20 0.00043 29.1 3.4 40 153-192 101-141 (176)
60 COG1791 Uncharacterized conser 50.5 13 0.00028 30.5 2.2 26 148-173 116-141 (181)
61 PF05721 PhyH: Phytanoyl-CoA d 49.9 12 0.00026 29.1 2.0 26 148-173 178-203 (211)
62 PF08496 Peptidase_S49_N: Pept 46.1 13 0.00028 29.7 1.7 10 163-172 141-150 (155)
63 PF11699 CENP-C_C: Mif2/CENP-C 42.8 21 0.00046 25.6 2.2 21 150-170 51-71 (85)
64 KOG1633|consensus 42.6 17 0.00037 36.3 2.2 28 146-173 192-219 (776)
65 COG4766 EutQ Ethanolamine util 41.0 33 0.00071 27.7 3.1 25 151-183 137-161 (176)
66 PLN00212 glutelin; Provisional 40.3 27 0.00059 33.0 3.1 21 153-173 396-416 (493)
67 PF12392 DUF3656: Collagenase 39.0 30 0.00066 25.9 2.6 78 84-171 22-107 (122)
68 PRK05341 homogentisate 1,2-dio 38.9 49 0.0011 30.9 4.4 37 146-182 168-208 (438)
69 TIGR02272 gentisate_1_2 gentis 37.4 28 0.0006 31.3 2.6 22 151-172 121-142 (335)
70 KOG0721|consensus 34.7 10 0.00022 32.2 -0.6 16 95-110 119-134 (230)
71 PF04209 HgmA: homogentisate 1 33.1 32 0.00069 32.0 2.3 35 146-180 160-197 (424)
72 PRK09685 DNA-binding transcrip 33.0 37 0.0008 28.8 2.5 22 151-172 90-111 (302)
73 PF07350 DUF1479: Protein of u 32.8 34 0.00074 31.7 2.4 27 146-172 315-342 (416)
74 TIGR00218 manA mannose-6-phosp 32.6 52 0.0011 28.7 3.4 23 151-173 272-294 (302)
75 PRK15131 mannose-6-phosphate i 31.6 58 0.0013 29.8 3.7 23 151-173 358-380 (389)
76 COG5443 FlbT Flagellar biosynt 30.7 58 0.0013 25.6 3.0 28 151-179 6-33 (148)
77 PLN02658 homogentisate 1,2-dio 29.8 73 0.0016 29.7 4.0 36 146-181 161-200 (435)
78 COG3257 GlxB Uncharacterized p 29.7 35 0.00075 29.2 1.7 24 150-173 221-244 (264)
79 COG3435 Gentisate 1,2-dioxygen 29.3 35 0.00075 30.6 1.7 22 150-171 131-152 (351)
80 TIGR02408 ectoine_ThpD ectoine 29.0 38 0.00083 29.1 2.0 24 150-173 211-234 (277)
81 TIGR03027 pepcterm_export puta 28.1 39 0.00084 26.7 1.7 15 151-165 149-163 (165)
82 KOG3995|consensus 28.1 37 0.0008 28.9 1.6 22 151-172 76-97 (279)
83 COG0179 MhpD 2-keto-4-pentenoa 26.9 62 0.0014 28.1 2.9 91 82-182 157-254 (266)
84 PRK00794 flbT flagellar biosyn 26.9 87 0.0019 24.4 3.4 29 151-180 5-33 (132)
85 KOG2130|consensus 26.0 76 0.0016 28.7 3.3 41 152-192 265-311 (407)
86 TIGR01762 chlorin-enz chlorina 26.0 49 0.0011 28.8 2.1 42 150-191 209-258 (288)
87 PRK10691 hypothetical protein; 25.9 70 0.0015 26.7 3.0 33 148-180 176-209 (219)
88 PRK15203 4-hydroxyphenylacetat 25.3 69 0.0015 29.7 3.0 33 147-180 159-193 (429)
89 PF04074 DUF386: Domain of unk 24.9 57 0.0012 25.4 2.2 32 140-171 102-134 (153)
90 TIGR01015 hmgA homogentisate 1 23.0 67 0.0015 29.9 2.5 36 147-182 163-201 (429)
91 PF05523 FdtA: WxcM-like, C-te 22.6 1E+02 0.0023 23.5 3.2 16 155-170 82-97 (131)
92 PF10048 DUF2282: Predicted in 22.0 70 0.0015 21.1 1.8 22 152-173 29-50 (53)
93 PF07378 FlbT: Flagellar prote 21.6 1.2E+02 0.0027 23.3 3.4 33 151-183 2-34 (126)
94 TIGR02303 HpaG-C-term 4-hydrox 21.5 97 0.0021 26.3 3.0 32 148-180 199-232 (245)
95 PRK02315 adaptor protein; Prov 21.2 44 0.00095 28.3 0.9 14 95-108 56-69 (233)
96 TIGR00074 hypC_hupF hydrogenas 21.0 59 0.0013 22.9 1.3 15 153-167 35-49 (76)
97 PTZ00143 deoxyuridine 5'-triph 20.6 1.5E+02 0.0033 23.6 3.8 37 134-171 20-56 (155)
98 COG4862 MecA Negative regulato 20.6 42 0.00091 28.5 0.6 14 95-108 56-69 (224)
99 COG3257 GlxB Uncharacterized p 20.5 85 0.0018 26.9 2.4 20 152-171 103-122 (264)
No 1
>PLN02288 mannose-6-phosphate isomerase
Probab=100.00 E-value=5.1e-50 Score=360.16 Aligned_cols=186 Identities=45% Similarity=0.793 Sum_probs=161.5
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCC-CCCCCCcceeeeeeecCCCCeEEccCCcCCccHHHHHHhCCCCCCchhH
Q psy12635 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGG-TVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVI 79 (198)
Q Consensus 1 ~~l~p~~~~~~WGg~~~~s~i~~l~~~~~~-~~~~~~~~gE~W~s~hp~~~S~v~~~~~~~~~L~~~i~~~p~~lG~~~~ 79 (198)
|+|+|.+|+|+||+++.+|.|++|++..+. .+++++||||+|+|+||+++|+|.++++.+++|.++|+++|++||....
T Consensus 2 ~~L~~~vq~YaWG~~~~~s~ia~l~~~~~~~~~~~~~p~aElW~g~hp~~pS~v~~~~~~~~~L~~~i~~~~~~lG~~~~ 81 (394)
T PLN02288 2 LRLRCAVQNYDWGRIGSESEVARLAAANSGSDVDPDKPYAELWMGTHPSGPSFVVATGKGSVLLKEWIAENPAALGDRVV 81 (394)
T ss_pred eeeeCCccccCCCCCChHHHHHHHhcccCCCcCCCCCcEEEEEeeECCCCCeEEeCCCCCCCcHHHHHHhChhhhCchhh
Confidence 689999999999999988999999986432 4567889999999999999999988776789999999999999999988
Q ss_pred hhhcCCCceeeeeeccCCCceeeeCCCCC-------------CCCCc--eEE---------eccCCC-------------
Q psy12635 80 SQFGEKLPFLLKVLSVDKALSIQMHPSKL-------------QYPGC--QII---------FYDESS------------- 122 (198)
Q Consensus 80 ~~~g~~fP~L~K~Ld~~~~LSiQVHPdd~-------------~~p~~--ei~---------~G~~~~------------- 122 (198)
++||++||||+|+||++++||||||||++ .|++| ||+ +|+++.
T Consensus 82 ~~~~~~lP~L~KvL~a~~~LSIQvHPd~~~A~~~~~~~P~~Y~D~nHKPEm~iALt~F~al~GFRp~~ei~~~l~~~p~l 161 (394)
T PLN02288 82 ERWGGDLPFLFKVLSVAKALSIQAHPDKKLAEKLHAEQPNVYKDDNHKPEMALALTEFEALCGFVTIQELKAVLRTVPEL 161 (394)
T ss_pred hhccccCceEEEEeecCCCCceeeCCCHHHHHHhcccCccccCCCCCCceeEEEcChHHHhcCCCCHHHHHHHHHhChHH
Confidence 89999999999999999999999999998 23444 554 232110
Q ss_pred ----------------------------------------------------c----------cCHHHHHHHHHhhCCCC
Q psy12635 123 ----------------------------------------------------R----------SEEMNLFSRVYSRFPGD 140 (198)
Q Consensus 123 ----------------------------------------------------r----------~~~~el~~~l~~~~~~D 140 (198)
| ....+++.+|.++||+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~f~~lm~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~yP~D 241 (394)
T PLN02288 162 RELVGSEAADQLLALPEHDGEEDVKSVLRSAFTALMTASKDVVTEAVSKLKARLHAESQARELTDKEELVLRLEKQYPGD 241 (394)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHCCCC
Confidence 0 01345778889999999
Q ss_pred cccchhccceeEECCCCCEEEecCCCceeecCCCeEEEEeccCCcc
Q psy12635 141 CGCFCVFLFNYVCLEEGQSIYIGANEPHAYLKGGNYKPDHSNEMRV 186 (198)
Q Consensus 141 ~g~~~~~~ln~v~v~pGd~i~IPaGt~HA~~~G~~~e~~~sSD~~~ 186 (198)
+|+|+.++||++.++|||+||+|||++|||.+|+|||||++||.|+
T Consensus 242 ~G~~~~llLN~v~L~PGeaifl~ag~~HAYl~G~~vE~MA~SDNVl 287 (394)
T PLN02288 242 VGVLSAFFLNYVKLNPGEALYLGANEPHAYLSGECIECMATSDNVV 287 (394)
T ss_pred CeeEhhhhhceEecCCCCEEEecCCCCceecCCCeEEeeecCCcee
Confidence 9999999999999999999999999999999999999999999855
No 2
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=9.6e-50 Score=358.58 Aligned_cols=180 Identities=29% Similarity=0.519 Sum_probs=154.2
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCCCCCCCCcceeeeeeecCCCCeEEccCCcCCccHHHHHHhCCC-CCCchhH
Q psy12635 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPH-CLGTDVI 79 (198)
Q Consensus 1 ~~l~p~~~~~~WGg~~~~s~i~~l~~~~~~~~~~~~~~gE~W~s~hp~~~S~v~~~~~~~~~L~~~i~~~p~-~lG~~~~ 79 (198)
|+|+|.+|+|+|||+ |.|++++|... ++++|+||+|||+||+++|+|.+++.++++|.++|+++|+ +||....
T Consensus 2 ~~l~~~~q~y~WG~~---s~l~~l~g~~~---~~~~p~aE~W~gaHp~~pS~v~~~~~~~~~L~~~i~~~~~~~LG~~~~ 75 (389)
T PRK15131 2 QKMINSVQNYAWGSK---TALTELYGIAN---PDNQPMAELWMGAHPKSSSRVQDANGDIVSLRDVIESDKSALLGEAVA 75 (389)
T ss_pred eeeeccccccCCCCH---HHHHHHhCCCC---CCCCceeEEEEEECCCCCeEEeCCCCCCCcHHHHHHhCHHHHcCcchh
Confidence 689999999999985 68999988643 3678999999999999999999877678999999999998 9999988
Q ss_pred hhhcCCCceeeeeeccCCCceeeeCCCCCCC-------------------------CCceEEe---------ccCCC---
Q psy12635 80 SQFGEKLPFLLKVLSVDKALSIQMHPSKLQY-------------------------PGCQIIF---------YDESS--- 122 (198)
Q Consensus 80 ~~~g~~fP~L~K~Ld~~~~LSiQVHPdd~~~-------------------------p~~ei~~---------G~~~~--- 122 (198)
++|| +||||+|+||++++||||||||++++ .+.||++ |+++.
T Consensus 76 ~~f~-~lP~L~KiL~a~~~LSIQvHPd~~~A~~~f~~e~~~gip~~~~~r~Y~D~nhKpEm~~aLt~F~al~GfRp~~ei 154 (389)
T PRK15131 76 KRFG-ELPFLFKVLCAAQPLSIQVHPNKRAAEIGFAKENAAGIPLDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEI 154 (389)
T ss_pred hhcC-CCceEeeeeccCCCceeEeCCCHHHHHHHhhhcccccCccccchhccCCCCCCceEEEEcchhHHhcCCCcHHHH
Confidence 8997 79999999999999999999999811 2236663 44310
Q ss_pred ----------------------------------ccC---------------------HHHHHHHHHhhCCCCcccchhc
Q psy12635 123 ----------------------------------RSE---------------------EMNLFSRVYSRFPGDCGCFCVF 147 (198)
Q Consensus 123 ----------------------------------r~~---------------------~~el~~~l~~~~~~D~g~~~~~ 147 (198)
+.+ ..+++.+|.++||+|+|+|+.+
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~p~D~G~~~~l 234 (389)
T PRK15131 155 VSLLQPVAGAHPAIAHFLQQPDAERLSELFASLLNMQGEEKSRALAVLKSALNSQQGEPWQTIRLISEFYPDDSGLFSPL 234 (389)
T ss_pred HHHHHhcchhhHHHHHHhcCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHCCCCchheehh
Confidence 011 1225667788999999999999
Q ss_pred cceeEECCCCCEEEecCCCceeecCCCeEEEEeccCCccc
Q psy12635 148 LFNYVCLEEGQSIYIGANEPHAYLKGGNYKPDHSNEMRVC 187 (198)
Q Consensus 148 ~ln~v~v~pGd~i~IPaGt~HA~~~G~~~e~~~sSD~~~~ 187 (198)
+||+|+|+|||+|||||||+|||++|+|+|||++||+|+.
T Consensus 235 lLN~v~l~pGeaifipAg~~HAyl~G~~iEima~SDnv~R 274 (389)
T PRK15131 235 LLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLR 274 (389)
T ss_pred heeEEEeCCCCEEEeCCCCCeEEcCCeEEEEEecCCcEEe
Confidence 9999999999999999999999999999999999999775
No 3
>KOG2757|consensus
Probab=100.00 E-value=4.9e-48 Score=337.59 Aligned_cols=183 Identities=43% Similarity=0.776 Sum_probs=165.2
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCC--CCCCCCcceeeeeeecCCCCeEEccCCcCCccHHHHHHhCCCCCCchh
Q psy12635 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGG--TVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDV 78 (198)
Q Consensus 1 ~~l~p~~~~~~WGg~~~~s~i~~l~~~~~~--~~~~~~~~gE~W~s~hp~~~S~v~~~~~~~~~L~~~i~~~p~~lG~~~ 78 (198)
|||+|.+|+|.||+.|.+|++++|....++ +++.++||||+|||+|++|||.|..+ +.+|++++.+||+++|+++
T Consensus 2 ~rL~c~Vk~Y~WGk~G~~S~varlaaa~d~~~~id~~~PYAElWMGTH~~Gps~v~~~---~~tL~~~l~~nP~~lg~~v 78 (411)
T KOG2757|consen 2 FRLKCHVKQYAWGKKGSESLVARLAAAGDPSFQIDQDKPYAELWMGTHPSGPSHVKET---GETLSQWLAKNPELLGNKV 78 (411)
T ss_pred ceeeeeeeeccccccCcHHHHHHHHHcCCCccccCCCCchHHhhcccCCCccHhhhhc---cccHHHHHhhChhhhcchh
Confidence 689999999999999999999999987655 88899999999999999999999987 6799999999999999999
Q ss_pred HhhhcCCCceeeeeeccCCCceeeeCCCCC-------CCC------Cc--eEE---------eccCCC------------
Q psy12635 79 ISQFGEKLPFLLKVLSVDKALSIQMHPSKL-------QYP------GC--QII---------FYDESS------------ 122 (198)
Q Consensus 79 ~~~~g~~fP~L~K~Ld~~~~LSiQVHPdd~-------~~p------~~--ei~---------~G~~~~------------ 122 (198)
.++||.++|||||+|+++++||||+|||++ ++| +| ||. +|+.+.
T Consensus 79 ~~k~~~~LpFLFKVLSI~k~LSIQaHP~K~lak~LH~~dP~~YpDdNHKPEmAiAlT~Fe~LcGFrp~~eI~~~l~~~pe 158 (411)
T KOG2757|consen 79 ADKFGCDLPFLFKVLSINKPLSIQAHPNKELAKKLHKTDPKHYPDDNHKPEMAIALTPFEALCGFRPLEEIKQFLDTIPE 158 (411)
T ss_pred HhhcCCCCceeeeEeeecceeeeeecCCHHHHHHHhhhCcccCCCCCCCchheeecchHhhhhCccCHHHHHHHHHhChH
Confidence 999999999999999999999999999999 333 33 443 233221
Q ss_pred ----------------------------------------------------c----------cCHHHHHHHHHhhCCCC
Q psy12635 123 ----------------------------------------------------R----------SEEMNLFSRVYSRFPGD 140 (198)
Q Consensus 123 ----------------------------------------------------r----------~~~~el~~~l~~~~~~D 140 (198)
| .+.++++..+.++||+|
T Consensus 159 ~~~LvGeEa~~q~~~~~~~e~e~~~~~l~~~Fs~lM~~~~~~i~~~v~~L~~r~~~~~~~~~~~d~~eli~~l~kqfP~D 238 (411)
T KOG2757|consen 159 LRELVGEEAARQLKDLTSHEDEDSKKVLKLCFSRLMKAEENVIKIQVSKLVKRLQNELNGFNLTDLEELILKLNKQFPGD 238 (411)
T ss_pred HHHHhhHHHHHHHHhhccchhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhccccccCcccHHHHHHHHHhhCCCc
Confidence 0 56779999999999999
Q ss_pred cccchhccceeEECCCCCEEEecCCCceeecCCCeEEEEeccCCcc
Q psy12635 141 CGCFCVFLFNYVCLEEGQSIYIGANEPHAYLKGGNYKPDHSNEMRV 186 (198)
Q Consensus 141 ~g~~~~~~ln~v~v~pGd~i~IPaGt~HA~~~G~~~e~~~sSD~~~ 186 (198)
+|+|..+|||++.++||+++|+.|..+|||.+|+|+|||..||.+|
T Consensus 239 IGvfs~~FlN~~~L~PGEA~yL~AnepHAYlsGdcvECMA~SDNvI 284 (411)
T KOG2757|consen 239 IGVFSPFFLNYVRLNPGEAIYLEANEPHAYLSGDCVECMACSDNVI 284 (411)
T ss_pred ceeeeHhhhhheecCCCceeeecCCCcceeecCceeEEecccCcee
Confidence 9999999999999999999999999999999999999999999765
No 4
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-47 Score=330.77 Aligned_cols=168 Identities=29% Similarity=0.500 Sum_probs=143.9
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCCCCCCCCcceeeeeeecCCCCeEEccCCcCCccHHHHHHhCCCCCCchhHh
Q psy12635 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVIS 80 (198)
Q Consensus 1 ~~l~p~~~~~~WGg~~~~s~i~~l~~~~~~~~~~~~~~gE~W~s~hp~~~S~v~~~~~~~~~L~~~i~~~p~~lG~~~~~ 80 (198)
++|+|.+|+|+||| +.|++++|.. +.++++||+|+++||+++|+|.++++++++|++++++++++||+...
T Consensus 4 ~~l~~~l~~~~WGg----~~L~~lfg~~----~~~~~~gE~W~~AHp~~~S~v~~~~~~~~~L~el~~~~~ellG~~~~- 74 (312)
T COG1482 4 LFLTPVLQEYIWGG----TALADLFGYD----PPSEPIGELWAGAHPNGPSTVANGPGQGKSLSELIADPRELLGNKSF- 74 (312)
T ss_pred eecchhheeechhH----HHHHHHhCCC----CCCCceEeEEEEecCCCCeeEEecCcCCcCHHHHHhCcHhhcCCcch-
Confidence 58999999999996 5799999864 25679999999999999999999998999999999944469999853
Q ss_pred hhcCCCceeeeeeccCCCceeeeCCCCC--------------------CCCCceEEeccCCCccCH---HHHHHHHHhhC
Q psy12635 81 QFGEKLPFLLKVLSVDKALSIQMHPSKL--------------------QYPGCQIIFYDESSRSEE---MNLFSRVYSRF 137 (198)
Q Consensus 81 ~~g~~fP~L~K~Ld~~~~LSiQVHPdd~--------------------~~p~~ei~~G~~~~r~~~---~el~~~l~~~~ 137 (198)
.+||||+|+|||+++|||||||||+ ..+++||++|+++. .++ ++|...+..
T Consensus 75 ---~~FplL~KiLdA~~~LSiQVHP~d~~A~~~~~g~~gkte~w~y~D~~~k~Eli~g~~~~-~~~~~~e~l~~~i~~-- 148 (312)
T COG1482 75 ---DRFPLLFKILDANDPLSIQVHPSDEYAEEGEEGILGKTECWYYKDANHKPELIYGLTPA-KSKPAIEELKEMIDR-- 148 (312)
T ss_pred ---hhccceeeeeccCCcceEEECCCHHHHhhcccCccCCCcceeecCCCCCceEEEEEchh-hcchhHHHHHHhhhh--
Confidence 4799999999999999999999999 23456999999932 344 777777762
Q ss_pred CCCcccchhccceeEECCCCCEEEecCCCceeecCCCeEEEEeccCCcc
Q psy12635 138 PGDCGCFCVFLFNYVCLEEGQSIYIGANEPHAYLKGGNYKPDHSNEMRV 186 (198)
Q Consensus 138 ~~D~g~~~~~~ln~v~v~pGd~i~IPaGt~HA~~~G~~~e~~~sSD~~~ 186 (198)
.|+|...+||+|+|+|||++|+||||+|||++|.++|+|+|||+++
T Consensus 149 ---~~~~d~~lLn~v~lkpGe~~fl~Agt~HA~~~G~~lEvmqnSDnty 194 (312)
T COG1482 149 ---GGLFDPLLLNRVKLKPGEAFFLPAGTPHAYLKGLVLEVMQNSDNTY 194 (312)
T ss_pred ---ccccchhhhcEEecCCCCEEEecCCCceeeccceEEEEEecCccEE
Confidence 2334358999999999999999999999999999999999999865
No 5
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=100.00 E-value=1.6e-45 Score=321.52 Aligned_cols=165 Identities=26% Similarity=0.418 Sum_probs=137.7
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCCCCCCCCcceeeee-eecCCCCeEEccCCcCCccHHHHHHhCCCCCCchhH
Q psy12635 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWL-GTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVI 79 (198)
Q Consensus 1 ~~l~p~~~~~~WGg~~~~s~i~~l~~~~~~~~~~~~~~gE~W~-s~hp~~~S~v~~~~~~~~~L~~~i~~~p~~lG~~~~ 79 (198)
++|+|++++|+||| +.|++++|... ..+++||+|+ |+||+++|+|.+++.++++|.++++++|++||+...
T Consensus 2 ~~~~p~~~~~~WGG----~~l~~~~g~~~----~~~~~aE~W~~s~hp~~~S~v~~g~~~g~~L~~~i~~~~~llG~~~~ 73 (302)
T TIGR00218 2 LFIFPVFKERDWGG----TALADLFGYSI----PSQQTGECWAGSAHPKGPSTVLNGPYKGVSLIDLWEKHRELLGRADG 73 (302)
T ss_pred ccccccccccCccH----HHHHHHhCCCC----CCCCccceEEEEecCCCceEEecCCcCCCCHHHHHHhCHHhhCCccc
Confidence 57999999999998 46999988543 2357999998 699999999998877799999999999999998763
Q ss_pred hhhcCCCceeeeeeccCCCceeeeCCCCCCC--------------------CCceEEeccCCCccCHHHHHHHHHhhCCC
Q psy12635 80 SQFGEKLPFLLKVLSVDKALSIQMHPSKLQY--------------------PGCQIIFYDESSRSEEMNLFSRVYSRFPG 139 (198)
Q Consensus 80 ~~~g~~fP~L~K~Ld~~~~LSiQVHPdd~~~--------------------p~~ei~~G~~~~r~~~~el~~~l~~~~~~ 139 (198)
+ +||||+|+||++++|||||||||+.+ +++++++|... .+++++.+++..
T Consensus 74 ~----~~P~L~KiLda~~~LSIQVHPdD~~a~~~~~~~~gk~e~w~i~~~~~~~~~~~g~~~--~~~~~~~~~i~~---- 143 (302)
T TIGR00218 74 D----RFPFLFKVLDAAKPLSIQVHPDDDYAELHEEGELGKTECWYIIDCDEAAEIIKGHLK--NSKEELWTMIED---- 143 (302)
T ss_pred c----cCceEEEEecCCCCceeEECCChHHHHhccccccccEEEEEeecCCccHHhhhcchh--cChHHHHHHHhc----
Confidence 2 59999999999999999999999821 12234466554 456777777633
Q ss_pred CcccchhccceeEECCCCCEEEecCCCceeecCCCeEEEEeccCCcc
Q psy12635 140 DCGCFCVFLFNYVCLEEGQSIYIGANEPHAYLKGGNYKPDHSNEMRV 186 (198)
Q Consensus 140 D~g~~~~~~ln~v~v~pGd~i~IPaGt~HA~~~G~~~e~~~sSD~~~ 186 (198)
|.+. .+||+++|+|||+|||||||+|||..|.++|||++||+++
T Consensus 144 --g~~~-~~ln~v~v~~Gd~i~ipaGt~HA~~g~~~~Eiq~~SD~t~ 187 (302)
T TIGR00218 144 --GLFK-LLLNRIKLKPGDFFYVPSGTPHAYKGGLVLEVMQNSDNVY 187 (302)
T ss_pred --CcHH-HHhcccccCCCCEEEeCCCCcccccCceEEEEEcCCCcEE
Confidence 5554 8999999999999999999999987767899999999986
No 6
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=100.00 E-value=9.3e-46 Score=331.49 Aligned_cols=181 Identities=36% Similarity=0.636 Sum_probs=135.7
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCCCCCCCCcceeeeeeecCCCCeEEccCCcCCccHHHHHHhCCCCCCchhHh
Q psy12635 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVIS 80 (198)
Q Consensus 1 ~~l~p~~~~~~WGg~~~~s~i~~l~~~~~~~~~~~~~~gE~W~s~hp~~~S~v~~~~~~~~~L~~~i~~~p~~lG~~~~~ 80 (198)
|||+|.+|+|+||++|+++.|+++++...+.+++++||||+|+++||+++|+|.+++..+++|.++++.+++. ...
T Consensus 2 ~~l~~~~~~y~WG~~Gs~~~l~~l~~~~~~~~~~~~p~aE~W~g~hp~~ps~v~~~~l~~~~~~~~~~~~~~~----~~~ 77 (373)
T PF01238_consen 2 FKLKPAVQNYIWGKKGSNSRLARLLGKPDPSIDEDKPYAELWMGAHPNGPSVVANGGLQGKILSDPIAELGEK----FGE 77 (373)
T ss_dssp EEEEEEEEE-TTBEECCCSHHHHHHHHH-TT--TTSCEEEEEES--TTS-EEEECTTHHHHHHHHHHHHHHHH----HHH
T ss_pred eeeecCcccCccCCCCcccHHHHHhcCCCCccccCCccCCEEEEECCCCceEeecCccccchhhhhHhhhhHH----hhh
Confidence 6899999999999777788999999987654556789999999999999999999876667777777766553 335
Q ss_pred hhcCCCceeeeeeccCCCceeeeCCCCC-------------CCCCc--eEE---------eccCCC--------------
Q psy12635 81 QFGEKLPFLLKVLSVDKALSIQMHPSKL-------------QYPGC--QII---------FYDESS-------------- 122 (198)
Q Consensus 81 ~~g~~fP~L~K~Ld~~~~LSiQVHPdd~-------------~~p~~--ei~---------~G~~~~-------------- 122 (198)
+|+.+||||+|+||++++||||||||++ .+++| ||+ +|+++.
T Consensus 78 ~~~~~lP~L~KvL~~~~~LSiQvHPd~~~A~~l~~~~p~~Y~D~NhKPEm~iALT~F~al~GFRp~~eI~~~l~~~~el~ 157 (373)
T PF01238_consen 78 RFGDRLPFLFKVLDAAKPLSIQVHPDKEQAEKLHDADPRNYKDDNHKPEMAIALTPFEALCGFRPLEEIAEFLKDAPELA 157 (373)
T ss_dssp HTTSS-SEEEEEEEESS---EEE---HHHHHHCTCCTTCCCHCSCTTTEEEEESS-EEEEEEE--HHHHHHHCCCCHHHH
T ss_pred ccccccchhhhhhccCCCcccccCCCHHHHhhhhhcCcccccchhcCCceEEeccchhhcccccchhhhhhhcccChhHH
Confidence 6788999999999999999999999954 23333 444 343110
Q ss_pred -----------------------------------------------------------------c-cCHHHHHHHHHhh
Q psy12635 123 -----------------------------------------------------------------R-SEEMNLFSRVYSR 136 (198)
Q Consensus 123 -----------------------------------------------------------------r-~~~~el~~~l~~~ 136 (198)
| .+..++..++.++
T Consensus 158 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~d~~~~~~~l~~~ 237 (373)
T PF01238_consen 158 ELLGGEEAESLEELLSAIEEGDPDELLERPVLKGDFSALMPAGTEHAIEALAALVERQQNSDSTYRSYDLARLILRLNEQ 237 (373)
T ss_dssp HHHCCCHHCCHHHHHHHHCTTSHHHHHCCCHHHHHHHHHHTTTHHHHHHHHHHHHHHHCC-HCCCHCC-HHHHHHHHHCC
T ss_pred HHhhhhhhhhHHHHhhhhhccChhhhhhHHHhhhhhhhccccchHHHHHHHHHHHHhhhcccccccccccchhhhhhhhh
Confidence 0 2245788999999
Q ss_pred CCCCcccchhccceeEECCCCCEEEecCCCceeecCCCeEEEEeccCCcc
Q psy12635 137 FPGDCGCFCVFLFNYVCLEEGQSIYIGANEPHAYLKGGNYKPDHSNEMRV 186 (198)
Q Consensus 137 ~~~D~g~~~~~~ln~v~v~pGd~i~IPaGt~HA~~~G~~~e~~~sSD~~~ 186 (198)
||+|.|+|+ +|||++.|+|||++|+|||++|||.+|+|+|||.+||.++
T Consensus 238 yP~D~G~~~-llLN~v~L~pGeaifl~a~~~HAYl~G~~vE~MA~SDNVl 286 (373)
T PF01238_consen 238 YPGDVGIFA-LLLNYVELQPGEAIFLPAGEPHAYLSGDCVECMANSDNVL 286 (373)
T ss_dssp STTTTCHCH-CCEEEEEE-TT-EEEEHTTHHEEEEEEEEEEEEESSEEEE
T ss_pred ccccCCcEE-EEEEEEEecCCceEEecCCCccccccccceecccccccee
Confidence 999999999 9999999999999999999999999999999999999865
No 7
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=96.30 E-value=0.01 Score=47.28 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=44.0
Q ss_pred eeeeeec--cCCCceeeeCCCCCCCCCceEEe---ccCCCccCHHHHHHHHHhhCCCCcccchhccceeEECCCCCEEEe
Q psy12635 88 FLLKVLS--VDKALSIQMHPSKLQYPGCQIIF---YDESSRSEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLEEGQSIYI 162 (198)
Q Consensus 88 ~L~K~Ld--~~~~LSiQVHPdd~~~p~~ei~~---G~~~~r~~~~el~~~l~~~~~~D~g~~~~~~ln~v~v~pGd~i~I 162 (198)
+.+|.|- +++.||+|.|.-.. |.|+ |.-. .+. +| +...+++||++||
T Consensus 63 ~~vkri~V~pG~~lSlq~H~~R~-----E~W~Vv~G~a~--v~~------------~~---------~~~~~~~g~sv~I 114 (151)
T PF01050_consen 63 YKVKRITVNPGKRLSLQYHHHRS-----EHWTVVSGTAE--VTL------------DD---------EEFTLKEGDSVYI 114 (151)
T ss_pred EEEEEEEEcCCCccceeeecccc-----cEEEEEeCeEE--EEE------------CC---------EEEEEcCCCEEEE
Confidence 5667654 69999999998764 4332 2221 110 12 1256899999999
Q ss_pred cCCCceeecC-CC----eEEEEecc
Q psy12635 163 GANEPHAYLK-GG----NYKPDHSN 182 (198)
Q Consensus 163 PaGt~HA~~~-G~----~~e~~~sS 182 (198)
|+|+.|.+.. |. .+|+|...
T Consensus 115 p~g~~H~i~n~g~~~L~~IEVq~G~ 139 (151)
T PF01050_consen 115 PRGAKHRIENPGKTPLEIIEVQTGE 139 (151)
T ss_pred CCCCEEEEECCCCcCcEEEEEecCC
Confidence 9999999964 31 45777643
No 8
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=95.78 E-value=0.0064 Score=46.75 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=26.0
Q ss_pred cceeEECCCCCEEEecCCCceeecCCC---eEEEEeccCC
Q psy12635 148 LFNYVCLEEGQSIYIGANEPHAYLKGG---NYKPDHSNEM 184 (198)
Q Consensus 148 ~ln~v~v~pGd~i~IPaGt~HA~~~G~---~~e~~~sSD~ 184 (198)
+=..+.+.|||+||||+|++|---.-+ +..+-..||.
T Consensus 86 LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaRsDp 125 (142)
T COG4101 86 LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIARSDP 125 (142)
T ss_pred eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEccCC
Confidence 445688999999999999999753332 3344446664
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.80 E-value=0.027 Score=43.11 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=42.1
Q ss_pred CCCceeeeeeccCCCceeeeCCCCCCCCCceEEe---ccCCCccCHHHHHHHHHhhCCCCcccchhccceeEECCCCCEE
Q psy12635 84 EKLPFLLKVLSVDKALSIQMHPSKLQYPGCQIIF---YDESSRSEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLEEGQSI 160 (198)
Q Consensus 84 ~~fP~L~K~Ld~~~~LSiQVHPdd~~~p~~ei~~---G~~~~r~~~~el~~~l~~~~~~D~g~~~~~~ln~v~v~pGd~i 160 (198)
..+-+-..++-..+.+|.|.|+..+ |+++ |.-. .+.+ | ..+.|++||++
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~d-----E~~~Vl~G~g~--v~~~------------~---------~~~~v~~gd~~ 85 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRD-----EHWYVLEGTGK--VTIG------------G---------EEVEVKAGDSV 85 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcc-----eEEEEEeeEEE--EEEC------------C---------EEEEecCCCEE
Confidence 4566777778889999999999832 3332 2111 1100 1 23789999999
Q ss_pred EecCCCceeecCC
Q psy12635 161 YIGANEPHAYLKG 173 (198)
Q Consensus 161 ~IPaGt~HA~~~G 173 (198)
|||+|+.|.+-.-
T Consensus 86 ~iP~g~~H~~~N~ 98 (127)
T COG0662 86 YIPAGTPHRVRNT 98 (127)
T ss_pred EECCCCcEEEEcC
Confidence 9999999987543
No 10
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=94.71 E-value=0.02 Score=38.27 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.1
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
.+.+++||+++||+|+.|++..
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n 59 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRN 59 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEE
T ss_pred EeEccCCEEEEECCCCeEEEEE
Confidence 5899999999999999999854
No 11
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=93.46 E-value=0.057 Score=41.07 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=40.6
Q ss_pred CCceeeeeeccCCCceeeeCC-CCCCCCCceEEeccCCCccCHHHHHHHHHhhCCCCcccchhccceeEECCCCCEEEec
Q psy12635 85 KLPFLLKVLSVDKALSIQMHP-SKLQYPGCQIIFYDESSRSEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLEEGQSIYIG 163 (198)
Q Consensus 85 ~fP~L~K~Ld~~~~LSiQVHP-dd~~~p~~ei~~G~~~~r~~~~el~~~l~~~~~~D~g~~~~~~ln~v~v~pGd~i~IP 163 (198)
.+....=.++....++-|.|| .+. .+++ .+. ++.-.+. -....+++||+|+||
T Consensus 42 ~~~~~~v~~~~G~~~~~H~hp~~~~-----~~~V-l~G------~~~~~~~--------------g~~~~l~~Gd~i~ip 95 (131)
T COG1917 42 NLSVVLVTFEPGAVIPWHTHPLGEQ-----TIYV-LEG------EGTVQLE--------------GEKKELKAGDVIIIP 95 (131)
T ss_pred eEEEEEEEECCCcccccccCCCcce-----EEEE-Eec------EEEEEec--------------CCceEecCCCEEEEC
Confidence 455555578889999999999 331 2221 111 1111112 122789999999999
Q ss_pred CCCceeecCC
Q psy12635 164 ANEPHAYLKG 173 (198)
Q Consensus 164 aGt~HA~~~G 173 (198)
+|+.|++...
T Consensus 96 ~g~~H~~~a~ 105 (131)
T COG1917 96 PGVVHGLKAV 105 (131)
T ss_pred CCCeeeeccC
Confidence 9999999665
No 12
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.00 E-value=0.066 Score=39.17 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=19.3
Q ss_pred ceeEECCCCCEEEecCCCceeecC-CCeEE
Q psy12635 149 FNYVCLEEGQSIYIGANEPHAYLK-GGNYK 177 (198)
Q Consensus 149 ln~v~v~pGd~i~IPaGt~HA~~~-G~~~e 177 (198)
..++..+|||+|+||||+.|+... |.++-
T Consensus 80 ~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~ 109 (114)
T PF02373_consen 80 VYRFVQKPGEFVFIPPGAYHQVFNLGDNIS 109 (114)
T ss_dssp -EEEEEETT-EEEE-TT-EEEEEESSSEEE
T ss_pred cccceECCCCEEEECCCceEEEEeCCceEE
Confidence 457889999999999999999643 33543
No 13
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=92.53 E-value=0.18 Score=40.61 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=24.9
Q ss_pred eeEECCCCCEEEecCCCceeecCC--C-eEEEEe
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYLKG--G-NYKPDH 180 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~~G--~-~~e~~~ 180 (198)
..+.+++||+++||+|++|+..+- + ++.+|.
T Consensus 70 ~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~ 103 (159)
T TIGR03037 70 EDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIER 103 (159)
T ss_pred EEEEECCCCEEEeCCCCCcccccCCCcEEEEEEe
Confidence 359999999999999999999764 3 345654
No 14
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=92.35 E-value=0.11 Score=37.99 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=17.3
Q ss_pred eeEECCCCCEEEecCCCceeecCCC
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYLKGG 174 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~~G~ 174 (198)
..+.|+|||.++||+|++|++....
T Consensus 41 ~~~~l~~g~~~li~p~~~H~~~~~~ 65 (136)
T PF02311_consen 41 QEYPLKPGDLFLIPPGQPHSYYPDS 65 (136)
T ss_dssp EEEEE-TT-EEEE-TTS-EEEEE-T
T ss_pred EEEEEECCEEEEecCCccEEEecCC
Confidence 3589999999999999999997654
No 15
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=91.65 E-value=0.17 Score=38.95 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.7
Q ss_pred eEECCCCCEEEecCCCceeecCC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
.+.|++||++|+|++++|++..-
T Consensus 76 ~~~L~aGD~i~~~~~~~H~~~N~ 98 (125)
T PRK13290 76 VHPIRPGTMYALDKHDRHYLRAG 98 (125)
T ss_pred EEEeCCCeEEEECCCCcEEEEcC
Confidence 38999999999999999999753
No 16
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=91.25 E-value=0.19 Score=43.29 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=20.8
Q ss_pred eEECCCCCEEEecCCCceeecCC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
.++|++||++|||||.+|++...
T Consensus 219 ~~~V~~GD~i~i~~~~~h~~~~~ 241 (260)
T TIGR03214 219 WVPVEAGDYIWMGAYCPQACYAG 241 (260)
T ss_pred EEEecCCCEEEECCCCCEEEEec
Confidence 58999999999999999998663
No 17
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=91.02 E-value=0.32 Score=39.79 Aligned_cols=96 Identities=19% Similarity=0.381 Sum_probs=53.5
Q ss_pred CccHHHHHHhCCCCC----CchhHhhhcCCCceeeeee-ccCCCceeeeCCCCCCCCCceEEeccCCCccCHHHHHHHHH
Q psy12635 60 SENLESWIKNNPHCL----GTDVISQFGEKLPFLLKVL-SVDKALSIQMHPSKLQYPGCQIIFYDESSRSEEMNLFSRVY 134 (198)
Q Consensus 60 ~~~L~~~i~~~p~~l----G~~~~~~~g~~fP~L~K~L-d~~~~LSiQVHPdd~~~p~~ei~~G~~~~r~~~~el~~~l~ 134 (198)
-.+|...|++|.++| |+.+. |++. =+.+++. -.+++.-.++||.++ +.+=.+. ++...+.
T Consensus 6 p~n~~~Wieen~~~l~pPv~n~~l--~~~~-d~~VmvvgGpn~r~d~H~~~tdE------~FyqleG------~~~l~v~ 70 (177)
T PRK13264 6 PFNLHKWIEEHRHLLKPPVGNKQI--WQDS-DFIVMVVGGPNARTDFHYDPGEE------FFYQLEG------DMYLKVQ 70 (177)
T ss_pred CccHHHHHHhhHHHhCCCCCCeee--EcCC-CEEEEEEccCCcccccccCCCce------EEEEECC------eEEEEEE
Confidence 357889999988744 33321 3322 3555555 334455556677764 2221111 1111111
Q ss_pred hhCCCCcccchhccceeEECCCCCEEEecCCCceeecCC--C-eEEEEe
Q psy12635 135 SRFPGDCGCFCVFLFNYVCLEEGQSIYIGANEPHAYLKG--G-NYKPDH 180 (198)
Q Consensus 135 ~~~~~D~g~~~~~~ln~v~v~pGd~i~IPaGt~HA~~~G--~-~~e~~~ 180 (198)
.. + =...+.+++||+++||+|++|+..+- + ++.+|.
T Consensus 71 d~---g-------~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~ 109 (177)
T PRK13264 71 ED---G-------KRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIER 109 (177)
T ss_pred cC---C-------ceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEe
Confidence 10 0 11348999999999999999998663 3 345554
No 18
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=90.73 E-value=0.14 Score=45.17 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=16.9
Q ss_pred ceeEECCCCCEEEecCCCceeecCC
Q psy12635 149 FNYVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 149 ln~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
...+.|+|||.+|||.|++|.-..-
T Consensus 175 ~~~~~L~pGD~LYlPrG~~H~~~~~ 199 (319)
T PF08007_consen 175 VEEVVLEPGDVLYLPRGWWHQAVTT 199 (319)
T ss_dssp SEEEEE-TT-EEEE-TT-EEEEEES
T ss_pred eEEEEECCCCEEEECCCccCCCCCC
Confidence 3468899999999999999986543
No 19
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=90.12 E-value=0.33 Score=38.67 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=21.2
Q ss_pred eeEECCCCCEEEecCCCceeecCC--C-eEEEEe
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYLKG--G-NYKPDH 180 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~~G--~-~~e~~~ 180 (198)
..|+++.||.+++|++++|+...- + +++||.
T Consensus 75 kdi~I~EGe~fLLP~~vpHsP~R~~~tiGLViEr 108 (151)
T PF06052_consen 75 KDIPIREGEMFLLPANVPHSPQRPADTIGLVIER 108 (151)
T ss_dssp EEEEE-TTEEEEE-TT--EEEEE-TT-EEEEEEE
T ss_pred EEEEeCCCcEEecCCCCCCCCcCCCCcEEEEEEe
Confidence 469999999999999999998654 4 567775
No 20
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=89.68 E-value=0.32 Score=39.32 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.5
Q ss_pred eeEECCCCCEEEecCCCceeecC
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
..+.+++||++++|++++|.+-.
T Consensus 146 ~~~~l~~Gd~~~~~~~~~H~~~n 168 (185)
T PRK09943 146 QDYHLVAGQSYAINTGIPHSFSN 168 (185)
T ss_pred EEEEecCCCEEEEcCCCCeeeeC
Confidence 45889999999999999998855
No 21
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=89.17 E-value=0.19 Score=38.92 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.7
Q ss_pred ECCCCCEEEecCCCceeecCC
Q psy12635 153 CLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 153 ~v~pGd~i~IPaGt~HA~~~G 173 (198)
.+++||.++||+|.+|.+...
T Consensus 87 ~l~~Gdv~~vP~G~~h~~~n~ 107 (144)
T PF00190_consen 87 RLKAGDVFVVPAGHPHWIIND 107 (144)
T ss_dssp EEETTEEEEE-TT-EEEEEEC
T ss_pred eeecccceeeccceeEEEEcC
Confidence 799999999999999999776
No 22
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=88.92 E-value=0.26 Score=40.58 Aligned_cols=26 Identities=23% Similarity=0.090 Sum_probs=19.4
Q ss_pred cceeEECCCCCEEEecCCCceeecCC
Q psy12635 148 LFNYVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 148 ~ln~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
-.-.+.|+|||++|||+|--|+...-
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEES
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEc
Confidence 46678999999999999999998665
No 23
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=88.48 E-value=0.28 Score=39.31 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=18.9
Q ss_pred ceeEECCCCCEEEecCCCceeecCC
Q psy12635 149 FNYVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 149 ln~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
--+|.+++||.|.|||||-|-..-|
T Consensus 114 wiri~~e~GDli~vP~g~~HrF~~~ 138 (157)
T PF03079_consen 114 WIRILCEKGDLIVVPAGTYHRFTLG 138 (157)
T ss_dssp EEEEEEETTCEEEE-TT--EEEEES
T ss_pred EEEEEEcCCCEEecCCCCceeEEcC
Confidence 3468999999999999999998666
No 24
>KOG2107|consensus
Probab=87.12 E-value=0.41 Score=38.79 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=19.8
Q ss_pred eeEECCCCCEEEecCCCceeec
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~ 171 (198)
-+|.|++||.|+||||+-|-..
T Consensus 116 IRi~vekGDlivlPaGiyHRFT 137 (179)
T KOG2107|consen 116 IRIFVEKGDLIVLPAGIYHRFT 137 (179)
T ss_pred EEEEEecCCEEEecCcceeeee
Confidence 5789999999999999999874
No 25
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=86.48 E-value=0.66 Score=38.37 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=19.0
Q ss_pred eEECCCCCEEEecCCCceeec
Q psy12635 151 YVCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~ 171 (198)
.+.++|||.++||+|+.|.+.
T Consensus 121 ~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 121 WIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred EEEECCCCEEEECCCCcEEeE
Confidence 589999999999999999764
No 26
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=86.35 E-value=0.64 Score=36.04 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.3
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
...+++||.++||+|+.|.+-.
T Consensus 76 ~~~l~~GD~~~ip~g~~H~~~n 97 (146)
T smart00835 76 DARLREGDVFVVPQGHPHFQVN 97 (146)
T ss_pred EEEecCCCEEEECCCCEEEEEc
Confidence 4789999999999999997643
No 27
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=84.92 E-value=0.94 Score=38.62 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=20.8
Q ss_pred ceeEECCCCCEEEecCCCceeecC
Q psy12635 149 FNYVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 149 ln~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
-..+.++|||++|||.|+.|.++.
T Consensus 192 G~t~~l~pGDvlfIPkGs~~hf~t 215 (233)
T PRK15457 192 GETMIAKAGDVMFIPKGSSIEFGT 215 (233)
T ss_pred CEEEEeCCCcEEEECCCCeEEecC
Confidence 467899999999999999977743
No 28
>PRK13500 transcriptional activator RhaR; Provisional
Probab=82.35 E-value=1.4 Score=38.44 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.5
Q ss_pred eEECCCCCEEEecCCCceeecCC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
.+.+++||.++|++|++|++...
T Consensus 87 ~~~l~~Gdl~~I~~~~~H~~~~~ 109 (312)
T PRK13500 87 PYRITRGDLFYIHADDKHSYASV 109 (312)
T ss_pred EEeecCCeEEEECCCCeeccccc
Confidence 48899999999999999998653
No 29
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=81.50 E-value=2.1 Score=40.12 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=18.6
Q ss_pred EECCCCCEEEecCCCceeec
Q psy12635 152 VCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 152 v~v~pGd~i~IPaGt~HA~~ 171 (198)
+.|.+||+++||+|++|.+-
T Consensus 426 ~~L~~GDSi~ip~g~~H~~~ 445 (478)
T PRK15460 426 KLLGENESIYIPLGATHCLE 445 (478)
T ss_pred EEecCCCEEEECCCCcEEEE
Confidence 78999999999999999875
No 30
>PF12852 Cupin_6: Cupin
Probab=81.29 E-value=1.5 Score=35.08 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.5
Q ss_pred eEECCCCCEEEecCCCceeecCCC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLKGG 174 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~G~ 174 (198)
.+.+++||.+++|.|+.|.+.+..
T Consensus 56 ~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 56 PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEecCCCEEEEcCCCCeEeCCCC
Confidence 389999999999999999997664
No 31
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=79.70 E-value=1.6 Score=40.58 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.7
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
.+.+++||++|||+|++|.+..
T Consensus 416 ~~~l~~GDsi~ip~~~~H~~~N 437 (468)
T TIGR01479 416 TLLLTENESTYIPLGVIHRLEN 437 (468)
T ss_pred EEEecCCCEEEECCCCcEEEEc
Confidence 4789999999999999998863
No 32
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=79.52 E-value=1.4 Score=34.86 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.1
Q ss_pred eEECCCCCEEEecCCCceeecCC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
.++|+.||++.|||||=|.-.+-
T Consensus 86 el~v~~GDvlliPAGvGH~rl~s 108 (163)
T COG4297 86 ELEVGEGDVLLIPAGVGHCRLHS 108 (163)
T ss_pred eeeecCCCEEEEecCcccccccC
Confidence 38999999999999999977665
No 33
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=79.28 E-value=1 Score=31.23 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=13.5
Q ss_pred eEECCCCCEEEecCCC
Q psy12635 151 YVCLEEGQSIYIGANE 166 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt 166 (198)
.+.+++||++++|+|+
T Consensus 45 ~~~~~aGD~~~~p~G~ 60 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGW 60 (74)
T ss_dssp EEEEETTEEEEE-TTE
T ss_pred EEEEcCCcEEEECCCC
Confidence 5889999999999997
No 34
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=77.79 E-value=2.2 Score=36.67 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=18.2
Q ss_pred EECCCCCEEEecCCCceee
Q psy12635 152 VCLEEGQSIYIGANEPHAY 170 (198)
Q Consensus 152 v~v~pGd~i~IPaGt~HA~ 170 (198)
..|++||++|+|+|+.|.+
T Consensus 100 ~~L~~Gd~~y~pa~~~H~~ 118 (260)
T TIGR03214 100 HELREGGYAYLPPGSKWTL 118 (260)
T ss_pred EEECCCCEEEECCCCCEEE
Confidence 6899999999999999998
No 35
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=77.67 E-value=2.2 Score=36.33 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.9
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
.+.+++||.+++|+|++|.++.
T Consensus 68 ~~~~~~g~~i~i~p~~~h~~~~ 89 (290)
T PRK10572 68 AFVCRPGDLLLFPPGEIHHYGR 89 (290)
T ss_pred eEecCCCCEEEECCCCceeecc
Confidence 4899999999999999999864
No 36
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=76.33 E-value=1.9 Score=39.04 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=18.1
Q ss_pred ECCCCCEEEecCCCceeecC
Q psy12635 153 CLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 153 ~v~pGd~i~IPaGt~HA~~~ 172 (198)
.|++||++|+|+|.+|.+..
T Consensus 113 ~L~~GD~~~fP~g~~H~~~n 132 (367)
T TIGR03404 113 DVGAGDLWYFPPGIPHSLQG 132 (367)
T ss_pred EECCCCEEEECCCCeEEEEE
Confidence 79999999999999998754
No 37
>PRK13501 transcriptional activator RhaR; Provisional
Probab=75.74 E-value=2.1 Score=36.59 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.2
Q ss_pred eeEECCCCCEEEecCCCceeecC
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
+.+.+++||.++||+|.+|++..
T Consensus 56 ~~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 56 HPYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred eeeeecCCeEEEEcCCCcccccc
Confidence 34889999999999999998754
No 38
>PRK13502 transcriptional activator RhaR; Provisional
Probab=75.24 E-value=2.3 Score=35.98 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
.+.++|||.++||+|++|.+..
T Consensus 57 ~~~l~~g~l~li~~~~~H~~~~ 78 (282)
T PRK13502 57 PYRITRGDLFYIRAEDKHSYTS 78 (282)
T ss_pred EEeecCCcEEEECCCCcccccc
Confidence 4899999999999999999865
No 39
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=74.95 E-value=2.7 Score=38.02 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=19.0
Q ss_pred eEECCCCCEEEecCCCceeec
Q psy12635 151 YVCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~ 171 (198)
...+++||++|||.|..|.+.
T Consensus 290 ~~~l~~GD~~~iP~g~~H~i~ 310 (367)
T TIGR03404 290 TFDYQAGDVGYVPRNMGHYVE 310 (367)
T ss_pred EEEECCCCEEEECCCCeEEEE
Confidence 467999999999999999875
No 40
>PRK11171 hypothetical protein; Provisional
Probab=74.25 E-value=3 Score=35.96 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.2
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
.++|++||+++++++.+|+|-.
T Consensus 224 ~~~l~~GD~i~~~~~~~h~~~N 245 (266)
T PRK11171 224 WVEVEAGDFIWMRAYCPQACYA 245 (266)
T ss_pred EEEeCCCCEEEECCCCCEEEEC
Confidence 5889999999999999999964
No 41
>PRK11171 hypothetical protein; Provisional
Probab=74.18 E-value=3.2 Score=35.79 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=19.2
Q ss_pred eEECCCCCEEEecCCCceeec
Q psy12635 151 YVCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~ 171 (198)
.+.|++||++++|+++.|++.
T Consensus 102 ~~~L~~GDsi~~p~~~~H~~~ 122 (266)
T PRK11171 102 THALSEGGYAYLPPGSDWTLR 122 (266)
T ss_pred EEEECCCCEEEECCCCCEEEE
Confidence 378999999999999999984
No 42
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=74.06 E-value=2.8 Score=35.51 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.3
Q ss_pred eEECCCCCEEEecCCCceee
Q psy12635 151 YVCLEEGQSIYIGANEPHAY 170 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~ 170 (198)
.+.+++||.++||+|++|+.
T Consensus 62 ~~~l~~g~l~~i~p~~~H~~ 81 (278)
T PRK10296 62 RVLLERGDFVFIPLGSHHQS 81 (278)
T ss_pred EEEECCCcEEEeCCCCccce
Confidence 47999999999999999965
No 43
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=74.02 E-value=2.8 Score=32.02 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=15.6
Q ss_pred eeEECCCCCEEEecCCCc
Q psy12635 150 NYVCLEEGQSIYIGANEP 167 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~ 167 (198)
..+.+++||++++|+|+.
T Consensus 82 e~v~~~aGD~~~~~~G~~ 99 (116)
T COG3450 82 EPVEVRAGDSFVFPAGFK 99 (116)
T ss_pred eEEEEcCCCEEEECCCCe
Confidence 348999999999999973
No 44
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=73.77 E-value=4.4 Score=33.78 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.9
Q ss_pred eeEECCCCCEEEecCCCceeecCCC
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYLKGG 174 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~~G~ 174 (198)
..+.++||++|-||+|+=|+.=++.
T Consensus 153 ~~lkL~PGesitL~Pg~~HsFwae~ 177 (225)
T COG3822 153 SQLKLSPGESITLPPGLYHSFWAEE 177 (225)
T ss_pred eeEEECCCCcEecCCCceeeeeecC
Confidence 4589999999999999999987663
No 45
>KOG1356|consensus
Probab=72.83 E-value=3 Score=41.51 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCCCCcccchhccceeEECCCCCEEEecCCCceeec
Q psy12635 127 MNLFSRVYSRFPGDCGCFCVFLFNYVCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 127 ~el~~~l~~~~~~D~g~~~~~~ln~v~v~pGd~i~IPaGt~HA~~ 171 (198)
..++.+|.+.|.-. .. . +.=..||+||||||-+|-.-
T Consensus 784 ~~lr~RLkeEyGVe--~W--t----fvQ~LGdAVfIPAGaPHQVr 820 (889)
T KOG1356|consen 784 RYLRRRLKEEYGVE--PW--T----FVQFLGDAVFIPAGAPHQVR 820 (889)
T ss_pred HHHHHHHHHHhCCC--cc--c----hhhcccceEEecCCCcHHhh
Confidence 35666666665321 11 1 23357999999999999873
No 46
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=70.75 E-value=3.2 Score=34.13 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=17.1
Q ss_pred eeEECCCCCEEEecCCCceeecC
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
..+.++|||.++||+|..|....
T Consensus 110 ~~v~~~~G~~v~IPp~yaH~tIN 132 (182)
T PF06560_consen 110 IAVEAKPGDVVYIPPGYAHRTIN 132 (182)
T ss_dssp EEEEE-TTEEEEE-TT-EEEEEE
T ss_pred EEEEeCCCCEEEECCCceEEEEE
Confidence 34899999999999999998653
No 47
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=69.70 E-value=3.6 Score=34.79 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=19.7
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
.+.+++||.++||+|++|.+..
T Consensus 63 ~~~l~~g~~~ii~~~~~H~~~~ 84 (287)
T TIGR02297 63 EYSEYAPCFFLTPPSVPHGFVT 84 (287)
T ss_pred EEEecCCeEEEeCCCCcccccc
Confidence 5789999999999999999853
No 48
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=69.23 E-value=2.7 Score=38.25 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.6
Q ss_pred EECCCCCEEEecCCCceeecCC
Q psy12635 152 VCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 152 v~v~pGd~i~IPaGt~HA~~~G 173 (198)
..++|||..|||+|..|--.+-
T Consensus 181 ~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 181 EVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred hhcCCCceeecCCCCCcCCccc
Confidence 5689999999999999965444
No 49
>PRK13503 transcriptional activator RhaS; Provisional
Probab=68.70 E-value=2.8 Score=35.27 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.2
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
.+++++||.++||+|++|.+..
T Consensus 54 ~~~l~~g~~~~i~~~~~h~~~~ 75 (278)
T PRK13503 54 PYTLSGGTVCFVRDHDRHLYEH 75 (278)
T ss_pred cccccCCcEEEECCCccchhhh
Confidence 3789999999999999998744
No 50
>PLN00212 glutelin; Provisional
Probab=66.53 E-value=3.8 Score=38.68 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=17.8
Q ss_pred EECCCCCEEEecCCCceeec
Q psy12635 152 VCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 152 v~v~pGd~i~IPaGt~HA~~ 171 (198)
..+++||.|.||||++|-+-
T Consensus 150 ~~lr~GDViaiPaG~~hw~y 169 (493)
T PLN00212 150 HQFRQGDVVALPAGVAHWFY 169 (493)
T ss_pred eEeccCCEEEECCCCeEEEE
Confidence 57899999999999999753
No 51
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=66.24 E-value=3.9 Score=32.70 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=13.6
Q ss_pred eeEECCCCCEEEecCCCceee
Q psy12635 150 NYVCLEEGQSIYIGANEPHAY 170 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~ 170 (198)
+.+..+|||.||||.|+-=.+
T Consensus 113 ~~~~A~~GDvi~iPkGs~I~f 133 (152)
T PF06249_consen 113 QTVTAKPGDVIFIPKGSTITF 133 (152)
T ss_dssp EEEEEETT-EEEE-TT-EEEE
T ss_pred EEEEEcCCcEEEECCCCEEEE
Confidence 458899999999997764333
No 52
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=62.45 E-value=7.7 Score=32.60 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.5
Q ss_pred ceeEECCCCCEEEecCCCceeec
Q psy12635 149 FNYVCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 149 ln~v~v~pGd~i~IPaGt~HA~~ 171 (198)
...+.+++||.+|||++--|...
T Consensus 125 ~~v~~~~~Gd~iyVPp~~gH~t~ 147 (209)
T COG2140 125 ARVIAVRAGDVIYVPPGYGHYTI 147 (209)
T ss_pred EEEEEecCCcEEEeCCCcceEee
Confidence 55689999999999999999974
No 53
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=61.73 E-value=6 Score=34.38 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.4
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
.+.++|||.++|++|++|.+..
T Consensus 65 ~~~l~~Gd~ili~s~~~H~~~~ 86 (302)
T PRK10371 65 KVQINQGHITLFWACTPHQLTD 86 (302)
T ss_pred EEEEcCCcEEEEecCCcccccc
Confidence 4789999999999999998654
No 54
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=61.28 E-value=6.7 Score=27.83 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=17.9
Q ss_pred CCCCEEEecCCCceeecCCC-eE
Q psy12635 155 EEGQSIYIGANEPHAYLKGG-NY 176 (198)
Q Consensus 155 ~pGd~i~IPaGt~HA~~~G~-~~ 176 (198)
.+||+++.|+|+.|+..+.. |+
T Consensus 63 ~~G~~~~~p~g~~h~~~s~~gc~ 85 (91)
T PF12973_consen 63 GAGDWLRLPPGSSHTPRSDEGCL 85 (91)
T ss_dssp ETTEEEEE-TTEEEEEEESSCEE
T ss_pred CCCeEEEeCCCCccccCcCCCEE
Confidence 89999999999999987653 54
No 55
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=60.97 E-value=8.4 Score=32.70 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=24.9
Q ss_pred ceeEECCCCCEEEecCCCceeecC--CCeE--EEEe----ccCCccccccC
Q psy12635 149 FNYVCLEEGQSIYIGANEPHAYLK--GGNY--KPDH----SNEMRVCQKNN 191 (198)
Q Consensus 149 ln~v~v~pGd~i~IPaGt~HA~~~--G~~~--e~~~----sSD~~~~~~~~ 191 (198)
=..+.|+||++|-|++|+-|+.-. |+++ |+.. .+|..|-.+-.
T Consensus 153 G~~l~L~PGESiTL~Pg~yH~Fw~e~g~vLigEVStvNDD~tDN~F~~pig 203 (225)
T PF07385_consen 153 GTQLRLNPGESITLPPGIYHWFWGEGGDVLIGEVSTVNDDNTDNRFLEPIG 203 (225)
T ss_dssp T-EEEE-TT-EEEE-TTEEEEEEE-TTSEEEEEEEE---TTTSEEESS---
T ss_pred CceEEeCCCCeEeeCCCCeeeEEecCCCEEEEeeecccCCCccccccCCcC
Confidence 356899999999999999999743 3455 5554 34445544333
No 56
>KOG3706|consensus
Probab=60.45 E-value=5.2 Score=37.81 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.4
Q ss_pred ceeEECCCCCEEEecCCCceee
Q psy12635 149 FNYVCLEEGQSIYIGANEPHAY 170 (198)
Q Consensus 149 ln~v~v~pGd~i~IPaGt~HA~ 170 (198)
+....++|||.+|+|-|++|--
T Consensus 380 V~e~vle~GDllYfPRG~IHQA 401 (629)
T KOG3706|consen 380 VHEFVLEPGDLLYFPRGTIHQA 401 (629)
T ss_pred hHHhhcCCCcEEEecCcceeec
Confidence 3446689999999999999964
No 57
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=53.45 E-value=23 Score=28.83 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=26.2
Q ss_pred EECCCCCEEEecCCCceeecCC-CeEEEEeccCCccccccCC
Q psy12635 152 VCLEEGQSIYIGANEPHAYLKG-GNYKPDHSNEMRVCQKNNN 192 (198)
Q Consensus 152 v~v~pGd~i~IPaGt~HA~~~G-~~~e~~~sSD~~~~~~~~~ 192 (198)
+.-+.+..+|||+|..|++..= +-.++.--.|..+.|..++
T Consensus 100 L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~~~~y~p~~e~ 141 (176)
T TIGR01221 100 LSAENKRQLWIPEGFAHGFVVLSDEAEFLYKCTDYYAPEYER 141 (176)
T ss_pred ECCCCCCEEEeCCcceeEEEEcCCCeEEEEeCCCCcCccccc
Confidence 4455678999999999999652 2234443445555565543
No 58
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=53.19 E-value=13 Score=33.30 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=26.6
Q ss_pred eEECCCCCEEEec--CCCceeecCCCeEEEEe
Q psy12635 151 YVCLEEGQSIYIG--ANEPHAYLKGGNYKPDH 180 (198)
Q Consensus 151 ~v~v~pGd~i~IP--aGt~HA~~~G~~~e~~~ 180 (198)
.+.++||..+|+| =|+.|.|.+|+.+|+.-
T Consensus 68 ~f~L~~G~Y~Flp~~FG~~~iY~~Gsm~elgS 99 (334)
T PF05941_consen 68 PFALEPGEYIFLPMCFGNVFIYSKGSMMELGS 99 (334)
T ss_pred cceecCceEEEEhhhCCcEEEEECCcEEEecC
Confidence 4789999999999 69999999998888764
No 59
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=50.57 E-value=20 Score=29.12 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=21.4
Q ss_pred ECCCCCEEEecCCCceeecCCC-eEEEEeccCCccccccCC
Q psy12635 153 CLEEGQSIYIGANEPHAYLKGG-NYKPDHSNEMRVCQKNNN 192 (198)
Q Consensus 153 ~v~pGd~i~IPaGt~HA~~~G~-~~e~~~sSD~~~~~~~~~ 192 (198)
.-+.+-.+|||+|..|++..-+ --++.-..+-.++|.+++
T Consensus 101 s~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~~t~~y~p~~e~ 141 (176)
T PF00908_consen 101 SAENPRQLYIPPGVAHGFQTLEDDAEVLYKVTNYYDPEDER 141 (176)
T ss_dssp ETTT--EEEE-TTEEEEEEESSSEEEEEEEESS---GGGEE
T ss_pred CccccCEEEeCCcceeeEEeccCceEEEEecCCccCcccce
Confidence 3355568999999999997653 223333334457777654
No 60
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=50.47 E-value=13 Score=30.46 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.7
Q ss_pred cceeEECCCCCEEEecCCCceeecCC
Q psy12635 148 LFNYVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 148 ~ln~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
=.+.+.+.+||.|.||+||=|-..-|
T Consensus 116 ~~~~i~c~~gDLI~vP~gi~HwFtlt 141 (181)
T COG1791 116 KVYQIRCEKGDLISVPPGIYHWFTLT 141 (181)
T ss_pred cEEEEEEccCCEEecCCCceEEEEcc
Confidence 56778899999999999999987665
No 61
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=49.90 E-value=12 Score=29.13 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=20.8
Q ss_pred cceeEECCCCCEEEecCCCceeecCC
Q psy12635 148 LFNYVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 148 ~ln~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
-.-.+++++||+++.-+.++|+.+..
T Consensus 178 ~~~~~~~~~Gdvl~~~~~~~H~s~~N 203 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSRLIHGSGPN 203 (211)
T ss_dssp GCEEE-BSTTEEEEEETTSEEEEE-B
T ss_pred ceEEeecCCCeEEEEcCCccccCCCC
Confidence 44568899999999999999998764
No 62
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=46.10 E-value=13 Score=29.71 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=8.7
Q ss_pred cCCCceeecC
Q psy12635 163 GANEPHAYLK 172 (198)
Q Consensus 163 PaGt~HA~~~ 172 (198)
|.|++|+||=
T Consensus 141 ~GG~Vh~YGL 150 (155)
T PF08496_consen 141 PGGMVHGYGL 150 (155)
T ss_pred CCceeeccch
Confidence 7999999964
No 63
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=42.79 E-value=21 Score=25.62 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=14.6
Q ss_pred eeEECCCCCEEEecCCCceee
Q psy12635 150 NYVCLEEGQSIYIGANEPHAY 170 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~ 170 (198)
+.+.+.+|+.++||+|..-++
T Consensus 51 ~~f~v~~G~~F~VP~gN~Y~i 71 (85)
T PF11699_consen 51 TSFVVTKGGSFQVPRGNYYSI 71 (85)
T ss_dssp EEEEEETT-EEEE-TT-EEEE
T ss_pred cEEEEeCCCEEEECCCCEEEE
Confidence 457799999999998876665
No 64
>KOG1633|consensus
Probab=42.63 E-value=17 Score=36.25 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.9
Q ss_pred hccceeEECCCCCEEEecCCCceeecCC
Q psy12635 146 VFLFNYVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 146 ~~~ln~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
...-.+..|++|+.+|||+|-+||..-=
T Consensus 192 VdkC~~~~l~~g~T~~iPsGwIhAV~Tp 219 (776)
T KOG1633|consen 192 VDKCYKCILKQGQTLFIPSGWIHAVLTP 219 (776)
T ss_pred cceeEEEEeccCceEecccceeEeeecC
Confidence 3567788999999999999999998654
No 65
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=41.01 E-value=33 Score=27.73 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=18.0
Q ss_pred eEECCCCCEEEecCCCceeecCCCeEEEEeccC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLKGGNYKPDHSNE 183 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~G~~~e~~~sSD 183 (198)
.+..+|||.|||| +|..+|+-.++.
T Consensus 137 tv~a~aGDvifiP--------KgssIefst~ge 161 (176)
T COG4766 137 TVIAGAGDVIFIP--------KGSSIEFSTTGE 161 (176)
T ss_pred eEecCCCcEEEec--------CCCeEEEeccce
Confidence 3677899999999 566666665444
No 66
>PLN00212 glutelin; Provisional
Probab=40.30 E-value=27 Score=33.03 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=19.5
Q ss_pred ECCCCCEEEecCCCceeecCC
Q psy12635 153 CLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 153 ~v~pGd~i~IPaGt~HA~~~G 173 (198)
.|++||.++||.|-+|+..++
T Consensus 396 ~L~~GdvfVVPqg~~v~~~A~ 416 (493)
T PLN00212 396 VLRPGQLLIIPQHYAVLKKAE 416 (493)
T ss_pred EEcCCCEEEECCCCeEEEeec
Confidence 799999999999999987777
No 67
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=38.97 E-value=30 Score=25.86 Aligned_cols=78 Identities=12% Similarity=0.220 Sum_probs=55.0
Q ss_pred CCCceeeeee-ccCCCceeeeC-CCCCCCCCceEE------eccCCCccCHHHHHHHHHhhCCCCcccchhccceeEECC
Q psy12635 84 EKLPFLLKVL-SVDKALSIQMH-PSKLQYPGCQII------FYDESSRSEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLE 155 (198)
Q Consensus 84 ~~fP~L~K~L-d~~~~LSiQVH-Pdd~~~p~~ei~------~G~~~~r~~~~el~~~l~~~~~~D~g~~~~~~ln~v~v~ 155 (198)
...|+=+++- ..++++.+.+. -+.. ..++. -..+.+ .+.+.+.++|.+- |+. .+.+..+.+.
T Consensus 22 ~k~~v~~~~~~~~g~p~~l~~~d~~~~---~v~~~~~~~~e~A~~~p-~~~e~i~~ql~Kl--G~T----~F~~~~i~i~ 91 (122)
T PF12392_consen 22 RKIPVDLKLSAKKGEPLKLTLSDEDGN---SVEVTSEIVPEPAKKRP-LDEERIRKQLSKL--GNT----PFELENIEID 91 (122)
T ss_pred ceEeEEEEEEEecCCCEEEEEEECCCc---EEEEEecCCchhhCCCc-cCHHHHHHHHHhh--CCC----cEEEEEEEEE
Confidence 4688888887 68999999999 2221 11211 122333 7889999888774 243 5788999999
Q ss_pred CCCEEEecCCCceeec
Q psy12635 156 EGQSIYIGANEPHAYL 171 (198)
Q Consensus 156 pGd~i~IPaGt~HA~~ 171 (198)
-++.+|||...+..+.
T Consensus 92 ~~~~lFlP~s~LN~lR 107 (122)
T PF12392_consen 92 LDEGLFLPISELNELR 107 (122)
T ss_pred cCCCEEEEHHHHHHHH
Confidence 9999999998877653
No 68
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=38.91 E-value=49 Score=30.90 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=28.7
Q ss_pred hccceeEECCCCCEEEecCCCceeec--CCC--eEEEEecc
Q psy12635 146 VFLFNYVCLEEGQSIYIGANEPHAYL--KGG--NYKPDHSN 182 (198)
Q Consensus 146 ~~~ln~v~v~pGd~i~IPaGt~HA~~--~G~--~~e~~~sS 182 (198)
..=+-.+.++|||.++||-||.+.+. .|. .+.||..+
T Consensus 168 ~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g 208 (438)
T PRK05341 168 ATELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYG 208 (438)
T ss_pred EEeccceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecC
Confidence 34456789999999999999999886 343 57777644
No 69
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=37.42 E-value=28 Score=31.31 Aligned_cols=22 Identities=14% Similarity=-0.020 Sum_probs=20.2
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
++..++||+|++|+++-|..+.
T Consensus 121 ~~~~~~gD~~~tP~w~wH~H~n 142 (335)
T TIGR02272 121 RTTMHPGDFIITPSWTWHDHGN 142 (335)
T ss_pred EEeeeCCCEEEeCCCeeEeccc
Confidence 6899999999999999999864
No 70
>KOG0721|consensus
Probab=34.74 E-value=10 Score=32.18 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=12.9
Q ss_pred cCCCceeeeCCCCCCC
Q psy12635 95 VDKALSIQMHPSKLQY 110 (198)
Q Consensus 95 ~~~~LSiQVHPdd~~~ 110 (198)
+=.+||+|.|||+...
T Consensus 119 aYR~LSik~HPDK~~~ 134 (230)
T KOG0721|consen 119 AYRRLSIKYHPDKQPP 134 (230)
T ss_pred HHHHhhhhhCCCcCCC
Confidence 4568999999999644
No 71
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=33.10 E-value=32 Score=31.98 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=22.4
Q ss_pred hccceeEECCCCCEEEecCCCceeecCCC---eEEEEe
Q psy12635 146 VFLFNYVCLEEGQSIYIGANEPHAYLKGG---NYKPDH 180 (198)
Q Consensus 146 ~~~ln~v~v~pGd~i~IPaGt~HA~~~G~---~~e~~~ 180 (198)
..-+-.+.++|||.++||-||.+.+.-.. .+.||.
T Consensus 160 ~Te~G~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~ 197 (424)
T PF04209_consen 160 ETEFGRLDVRPGDYVVIPRGTRFRVELPGPARGYIIEN 197 (424)
T ss_dssp EETTEEEEE-TTEEEEE-TT--EEEE-SSSEEEEEEEE
T ss_pred EecCeeEEEcCCeEEEECCeeEEEEEeCCCceEEEEEc
Confidence 34566789999999999999999875432 456664
No 72
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=32.98 E-value=37 Score=28.84 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.3
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
.+.++|||.++++++.+|.+..
T Consensus 90 ~~~l~~G~~~l~~~~~p~~~~~ 111 (302)
T PRK09685 90 QVQLAAGDITLIDASRPCSIYP 111 (302)
T ss_pred EEEEcCCCEEEEECCCCcEeec
Confidence 4789999999999999998754
No 73
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=32.83 E-value=34 Score=31.70 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=15.7
Q ss_pred hccceeEE-CCCCCEEEecCCCceeecC
Q psy12635 146 VFLFNYVC-LEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 146 ~~~ln~v~-v~pGd~i~IPaGt~HA~~~ 172 (198)
..-|-.|| |+|||+||=...++||.-+
T Consensus 315 ~~~mv~iP~v~PGD~V~WHcD~iH~Vd~ 342 (416)
T PF07350_consen 315 EKTMVSIPDVEPGDYVFWHCDLIHAVDP 342 (416)
T ss_dssp HTT-EE---B-TT-EEEEETT--EEE--
T ss_pred hcccccCCCCCCCCeEEEeCCccccccc
Confidence 45667777 9999999999999999854
No 74
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=32.60 E-value=52 Score=28.69 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=17.3
Q ss_pred eEECCCCCEEEecCCCceeecCC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
.+.+++|+++||||++-.....|
T Consensus 272 ~~~l~~G~~~~ipa~~~~~~i~g 294 (302)
T TIGR00218 272 TLPLKKGESFFIPAHLGPFTIEG 294 (302)
T ss_pred EEEEecccEEEEccCCccEEEEe
Confidence 47789999999999875444444
No 75
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=31.63 E-value=58 Score=29.77 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=16.1
Q ss_pred eEECCCCCEEEecCCCceeecCC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
.+.+++|+++||||+.-.....|
T Consensus 358 ~~~l~~G~~~fipa~~~~~~~~g 380 (389)
T PRK15131 358 QLTLKPGESAFIAANESPVTVSG 380 (389)
T ss_pred EEEECCCCEEEEeCCCccEEEec
Confidence 46788888888888765554444
No 76
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=30.69 E-value=58 Score=25.59 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=22.2
Q ss_pred eEECCCCCEEEecCCCceeecCCCeEEEE
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLKGGNYKPD 179 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~G~~~e~~ 179 (198)
++.+|||+-|||-.-++-+=.++ .+|++
T Consensus 6 riSLk~gEki~iNGAVlr~DRkv-~lell 33 (148)
T COG5443 6 RISLKPGEKIFINGAVLRVDRKV-ALELL 33 (148)
T ss_pred EEeecCCCEEEEeccEEEEecee-EEEee
Confidence 68999999999998888865554 55655
No 77
>PLN02658 homogentisate 1,2-dioxygenase
Probab=29.76 E-value=73 Score=29.75 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=28.2
Q ss_pred hccceeEECCCCCEEEecCCCceeec--CCC--eEEEEec
Q psy12635 146 VFLFNYVCLEEGQSIYIGANEPHAYL--KGG--NYKPDHS 181 (198)
Q Consensus 146 ~~~ln~v~v~pGd~i~IPaGt~HA~~--~G~--~~e~~~s 181 (198)
..-+-++.|+|||.++||-||.+.+. .|. .+.||..
T Consensus 161 ~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~ 200 (435)
T PLN02658 161 KTELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF 200 (435)
T ss_pred EEeccceEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence 34566789999999999999999886 443 5677764
No 78
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=29.70 E-value=35 Score=29.22 Aligned_cols=24 Identities=42% Similarity=0.713 Sum_probs=21.4
Q ss_pred eeEECCCCCEEEecCCCceeecCC
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
|+++|+.||++++-|=.+-|+.+|
T Consensus 221 dwv~V~aGD~mwm~A~cpQacyag 244 (264)
T COG3257 221 NWVPVEAGDYIWMGAYCPQACYAG 244 (264)
T ss_pred ceEEeecccEEEeeccChhhhccC
Confidence 679999999999999998887766
No 79
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.28 E-value=35 Score=30.57 Aligned_cols=22 Identities=23% Similarity=0.028 Sum_probs=19.3
Q ss_pred eeEECCCCCEEEecCCCceeec
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~ 171 (198)
.++++++||+|..|++|-|--|
T Consensus 131 er~~M~~GDfilTP~w~wHdHg 152 (351)
T COG3435 131 ERTPMEAGDFILTPAWTWHDHG 152 (351)
T ss_pred ceeeccCCCEEEccCceeccCC
Confidence 4689999999999999999754
No 80
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=29.01 E-value=38 Score=29.06 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.3
Q ss_pred eeEECCCCCEEEecCCCceeecCC
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~~G 173 (198)
-.+.+++||+++.-+-|+|+.+..
T Consensus 211 v~~~~~aGDvl~f~~~~~H~S~~N 234 (277)
T TIGR02408 211 STFTGKAGSAVWFDCNTMHGSGSN 234 (277)
T ss_pred eeeccCCceEEEEccccccCCCCC
Confidence 346789999999999999999876
No 81
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=28.10 E-value=39 Score=26.69 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.0
Q ss_pred eEECCCCCEEEecCC
Q psy12635 151 YVCLEEGQSIYIGAN 165 (198)
Q Consensus 151 ~v~v~pGd~i~IPaG 165 (198)
-+.|+|||.||||..
T Consensus 149 n~~L~~gD~I~Vp~~ 163 (165)
T TIGR03027 149 NVELKPGDVLIIPES 163 (165)
T ss_pred CceeCCCCEEEEecc
Confidence 378999999999965
No 82
>KOG3995|consensus
Probab=28.09 E-value=37 Score=28.91 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.6
Q ss_pred eEECCCCCEEEecCCCceeecC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLK 172 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~ 172 (198)
-+.++.||.+.+||.++|+...
T Consensus 76 DivI~qGe~flLParVpHSPqR 97 (279)
T KOG3995|consen 76 DVVIRQGEIFLLPARVPHSPQR 97 (279)
T ss_pred eeEEecCcEEEeccCCCCChhh
Confidence 4778999999999999999765
No 83
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.94 E-value=62 Score=28.08 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=51.0
Q ss_pred hcCCCceeeeeeccCCCceeeeCCCCC-CCCC-ceEEeccCC---CccCHHHHHHHHHhhCCCCcccchhccceeEECCC
Q psy12635 82 FGEKLPFLLKVLSVDKALSIQMHPSKL-QYPG-CQIIFYDES---SRSEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLEE 156 (198)
Q Consensus 82 ~g~~fP~L~K~Ld~~~~LSiQVHPdd~-~~p~-~ei~~G~~~---~r~~~~el~~~l~~~~~~D~g~~~~~~ln~v~v~p 156 (198)
++..| +.-|-.|...|++-.+=..++ .+|. ..|.+=.+. .+.+..+++- ++.-++..+-..+.|+|
T Consensus 157 ~~~~w-~~aK~~d~~~Pigp~iv~~~e~~d~~~l~l~~~vNGe~~Q~g~t~~Mi~--------~i~~lI~~lS~~~tL~p 227 (266)
T COG0179 157 KGRPW-TRAKGFDTFAPVGPWIVTKDEISDPQNLPLSLRVNGEVRQRGNTSDMIF--------SIPELIAYLSRFMTLEP 227 (266)
T ss_pred hcCCc-ccccccCCCCCceeEEeccccCCCCccceEEEEECCEEEecCcHHHccc--------CHHHHHHHHhCCcccCC
Confidence 34345 677888888888877766665 3443 233321110 0011111111 11111233444489999
Q ss_pred CCEEEe--cCCCceeecCCCeEEEEecc
Q psy12635 157 GQSIYI--GANEPHAYLKGGNYKPDHSN 182 (198)
Q Consensus 157 Gd~i~I--PaGt~HA~~~G~~~e~~~sS 182 (198)
||.|+- |+|+- .+..|+.+++++.-
T Consensus 228 GDvI~TGTP~Gvg-~l~~GD~v~~~ieg 254 (266)
T COG0179 228 GDVILTGTPSGVG-FLKPGDVVEVEIEG 254 (266)
T ss_pred CCEEEeCCCCCcc-cCCCCCEEEEEecc
Confidence 999995 57776 77788888888643
No 84
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=26.90 E-value=87 Score=24.37 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=24.5
Q ss_pred eEECCCCCEEEecCCCceeecCCCeEEEEe
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLKGGNYKPDH 180 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~G~~~e~~~ 180 (198)
++.+||||-|+|-.-++-. ...+.++++-
T Consensus 5 kl~LKp~ERi~INGAVirn-drr~~l~i~n 33 (132)
T PRK00794 5 KLSLKPGERIFINGAVLRN-DRKVSLELLN 33 (132)
T ss_pred eEEecCCCEEEEcCeEEEe-CCceEEEEec
Confidence 5899999999999999988 6666778864
No 85
>KOG2130|consensus
Probab=26.04 E-value=76 Score=28.73 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=29.5
Q ss_pred EECCCCCEEEecCCCceeecCCC-eEEEEe---ccC-C-ccccccCC
Q psy12635 152 VCLEEGQSIYIGANEPHAYLKGG-NYKPDH---SNE-M-RVCQKNNN 192 (198)
Q Consensus 152 v~v~pGd~i~IPaGt~HA~~~G~-~~e~~~---sSD-~-~~~~~~~~ 192 (198)
...+||+.+|+|.|==|.+.--. .|.|.| |.. . .||++.-+
T Consensus 265 c~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~Vw~ktv~ 311 (407)
T KOG2130|consen 265 CLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFVWHKTVR 311 (407)
T ss_pred eeecCCceEEecCCeEEEEeccCceeeeeeccccccCCceeeecccC
Confidence 45689999999999999987663 666666 222 2 67776543
No 86
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=25.99 E-value=49 Score=28.79 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=30.6
Q ss_pred eeEECCCCCEEEecCCCceeecCCC---e----EEEE-eccCCccccccC
Q psy12635 150 NYVCLEEGQSIYIGANEPHAYLKGG---N----YKPD-HSNEMRVCQKNN 191 (198)
Q Consensus 150 n~v~v~pGd~i~IPaGt~HA~~~G~---~----~e~~-~sSD~~~~~~~~ 191 (198)
-.+++++||+++--+.|+|+.++.. . +.+. +.+|+.+-|..+
T Consensus 209 v~~~lkaGd~~~f~~~t~HgS~~N~S~~~~R~~~~~ry~~~~~~~~~~~~ 258 (288)
T TIGR01762 209 VPMQMKAGQFIIFWSTLMHASYPNSGESQMRMGFASRYVPSFVHVYPDSD 258 (288)
T ss_pred eeeeeCCceEEEECCCceecCCCCCCCCceEEEEEEEEcCCCceEcCCCC
Confidence 4678899999999999999998772 1 2222 377776666544
No 87
>PRK10691 hypothetical protein; Provisional
Probab=25.90 E-value=70 Score=26.68 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=22.3
Q ss_pred cceeEECCCCCEEEec-CCCceeecCCCeEEEEe
Q psy12635 148 LFNYVCLEEGQSIYIG-ANEPHAYLKGGNYKPDH 180 (198)
Q Consensus 148 ~ln~v~v~pGd~i~IP-aGt~HA~~~G~~~e~~~ 180 (198)
+.++++|+|||.|+.- ++.+..+..|+.+++++
T Consensus 176 ls~~~tL~aGDvI~TGTp~g~~~l~~GD~v~~~i 209 (219)
T PRK10691 176 MSRFFTLRAGDVVLTGTPEGVGPLQSGDELTVTF 209 (219)
T ss_pred HhcCCccCCCCEEEcCCCCCCEECCCCCEEEEEE
Confidence 4445699999999864 22223466888777776
No 88
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=25.35 E-value=69 Score=29.66 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=23.9
Q ss_pred ccceeEECCCCCEEEec--CCCceeecCCCeEEEEe
Q psy12635 147 FLFNYVCLEEGQSIYIG--ANEPHAYLKGGNYKPDH 180 (198)
Q Consensus 147 ~~ln~v~v~pGd~i~IP--aGt~HA~~~G~~~e~~~ 180 (198)
.+-.+++|+|||.|+.. +| +..+..|+.+|+++
T Consensus 159 ~lS~~~tL~pGDvI~TGTP~g-~~~l~~GD~v~~~i 193 (429)
T PRK15203 159 ALSEFATLNPGDAILLGTPQA-RVEIQPGDRVRVLA 193 (429)
T ss_pred HHhCCCCcCCCCEEEcCCCCC-ceECCCCCEEEEEE
Confidence 34445889999999974 44 35677888887776
No 89
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=24.94 E-value=57 Score=25.39 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=19.8
Q ss_pred Ccccc-hhccceeEECCCCCEEEecCCCceeec
Q psy12635 140 DCGCF-CVFLFNYVCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 140 D~g~~-~~~~ln~v~v~pGd~i~IPaGt~HA~~ 171 (198)
|+..+ ...--+.+.++||+++..=++-+|+.+
T Consensus 102 D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 102 DIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp TBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred CEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 65443 223346899999999999999999964
No 90
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=23.02 E-value=67 Score=29.94 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=27.5
Q ss_pred ccceeEECCCCCEEEecCCCceeecC-CC--eEEEEecc
Q psy12635 147 FLFNYVCLEEGQSIYIGANEPHAYLK-GG--NYKPDHSN 182 (198)
Q Consensus 147 ~~ln~v~v~pGd~i~IPaGt~HA~~~-G~--~~e~~~sS 182 (198)
.=+-++.|+|||.++||-||.+.+.- |. .+.||..+
T Consensus 163 TEfG~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 163 TEFGRLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred EeccceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 44567899999999999999888853 42 56777643
No 91
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=22.61 E-value=1e+02 Score=23.47 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=11.0
Q ss_pred CCCCEEEecCCCceee
Q psy12635 155 EEGQSIYIGANEPHAY 170 (198)
Q Consensus 155 ~pGd~i~IPaGt~HA~ 170 (198)
++...++||+|+.|++
T Consensus 82 ~~~~~L~Ippg~w~~~ 97 (131)
T PF05523_consen 82 EPNKGLYIPPGVWHGI 97 (131)
T ss_dssp -TTEEEEE-TT-EEEE
T ss_pred CCCeEEEECCchhhHh
Confidence 4447999999999977
No 92
>PF10048 DUF2282: Predicted integral membrane protein (DUF2282); InterPro: IPR018740 Members of this family of hypothetical bacterial proteins and putative signal peptide proteins have no known function.
Probab=22.02 E-value=70 Score=21.07 Aligned_cols=22 Identities=5% Similarity=-0.022 Sum_probs=17.8
Q ss_pred EECCCCCEEEecCCCceeecCC
Q psy12635 152 VCLEEGQSIYIGANEPHAYLKG 173 (198)
Q Consensus 152 v~v~pGd~i~IPaGt~HA~~~G 173 (198)
..-++.+++++|+||--.+..|
T Consensus 29 ~d~~~~~w~~vp~GtC~~i~gG 50 (53)
T PF10048_consen 29 CDYDGNAWKLVPKGTCEKIVGG 50 (53)
T ss_pred cCCCCCceEEccccccccccCc
Confidence 3447899999999998888666
No 93
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=21.57 E-value=1.2e+02 Score=23.27 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=23.9
Q ss_pred eEECCCCCEEEecCCCceeecCCCeEEEEeccC
Q psy12635 151 YVCLEEGQSIYIGANEPHAYLKGGNYKPDHSNE 183 (198)
Q Consensus 151 ~v~v~pGd~i~IPaGt~HA~~~G~~~e~~~sSD 183 (198)
++.+||||-|+|-.-++---...+.++++-...
T Consensus 2 kl~LkpgERi~INGAVi~N~drr~~l~i~n~a~ 34 (126)
T PF07378_consen 2 KLSLKPGERIIINGAVIRNGDRRSTLEIENDAP 34 (126)
T ss_pred eeeecCCCEEEEcCeEEEeCCCceEEEEecCCc
Confidence 478999999999988877333445677775433
No 94
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=21.48 E-value=97 Score=26.34 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=22.6
Q ss_pred cceeEECCCCCEEEec--CCCceeecCCCeEEEEe
Q psy12635 148 LFNYVCLEEGQSIYIG--ANEPHAYLKGGNYKPDH 180 (198)
Q Consensus 148 ~ln~v~v~pGd~i~IP--aGt~HA~~~G~~~e~~~ 180 (198)
+-++.+|+|||.|+.- +|+ ..+..|+.+++++
T Consensus 199 ls~~~tL~pGDvIlTGTp~g~-~~l~~GD~v~~~i 232 (245)
T TIGR02303 199 LSEFMTLEPGDVILTGTPKGL-SDVKPGDVVRLEI 232 (245)
T ss_pred HhcCCCcCCCCEEEcCCCCCC-eEcCCCCEEEEEE
Confidence 3444799999999864 333 3567888888776
No 95
>PRK02315 adaptor protein; Provisional
Probab=21.24 E-value=44 Score=28.29 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=11.8
Q ss_pred cCCCceeeeCCCCC
Q psy12635 95 VDKALSIQMHPSKL 108 (198)
Q Consensus 95 ~~~~LSiQVHPdd~ 108 (198)
+++||+|||+|...
T Consensus 56 ~~~pl~~qv~p~~~ 69 (233)
T PRK02315 56 DEGPLWFQVTPNEK 69 (233)
T ss_pred cCCeEEEEEEECCC
Confidence 48899999999653
No 96
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=21.03 E-value=59 Score=22.85 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=13.0
Q ss_pred ECCCCCEEEecCCCc
Q psy12635 153 CLEEGQSIYIGANEP 167 (198)
Q Consensus 153 ~v~pGd~i~IPaGt~ 167 (198)
++++||++.+.+|..
T Consensus 35 ~~~vGD~VLVH~G~A 49 (76)
T TIGR00074 35 EVKVGDYVLVHVGFA 49 (76)
T ss_pred CCCCCCEEEEecChh
Confidence 699999999999853
No 97
>PTZ00143 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=20.65 E-value=1.5e+02 Score=23.59 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=25.9
Q ss_pred HhhCCCCcccchhccceeEECCCCCEEEecCCCceeec
Q psy12635 134 YSRFPGDCGCFCVFLFNYVCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 134 ~~~~~~D~g~~~~~~ln~v~v~pGd~i~IPaGt~HA~~ 171 (198)
..++++|.|..+ ....-+.++||+...||.|.--++.
T Consensus 20 ~~~~~~dAG~DL-~a~~~~~i~Pg~~~~V~tGi~i~~p 56 (155)
T PTZ00143 20 KTFHEGDSGLDL-FIVKDQTIKPGETAFIKLGIKAAAF 56 (155)
T ss_pred ccCCCCccccCE-ecCCCeEECCCCEEEEECCeEEEcc
Confidence 445666777543 3334588999999999999866654
No 98
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=20.57 E-value=42 Score=28.48 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=12.4
Q ss_pred cCCCceeeeCCCCC
Q psy12635 95 VDKALSIQMHPSKL 108 (198)
Q Consensus 95 ~~~~LSiQVHPdd~ 108 (198)
+.+||+|||||=+.
T Consensus 56 ~~GpL~iqV~al~~ 69 (224)
T COG4862 56 DEGPLWIQVQALPQ 69 (224)
T ss_pred cCCceEEEEEEcCC
Confidence 68999999999874
No 99
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=20.54 E-value=85 Score=26.93 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=18.3
Q ss_pred EECCCCCEEEecCCCceeec
Q psy12635 152 VCLEEGQSIYIGANEPHAYL 171 (198)
Q Consensus 152 v~v~pGd~i~IPaGt~HA~~ 171 (198)
..+++|+..|+|+|.-|...
T Consensus 103 h~l~eggyaylPpgs~~~~~ 122 (264)
T COG3257 103 HALREGGYAYLPPGSGWTLR 122 (264)
T ss_pred EEeccCCeEEeCCCCcceEe
Confidence 67899999999999999886
Done!