RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12635
         (198 letters)



>gnl|CDD|215162 PLN02288, PLN02288, mannose-6-phosphate isomerase.
          Length = 394

 Score =  139 bits (352), Expect = 8e-40
 Identities = 58/107 (54%), Positives = 74/107 (69%), Gaps = 1/107 (0%)

Query: 2   ELSFSIQTYEWGKIGLDSKVAQLVEAAGGT-VDKDKNYAELWLGTHPSGPSSILSQCSRS 60
            L  ++Q Y+WG+IG +S+VA+L  A  G+ VD DK YAELW+GTHPSGPS +++    S
Sbjct: 3   RLRCAVQNYDWGRIGSESEVARLAAANSGSDVDPDKPYAELWMGTHPSGPSFVVATGKGS 62

Query: 61  ENLESWIKNNPHCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSK 107
             L+ WI  NP  LG  V+ ++G  LPFL KVLSV KALSIQ HP K
Sbjct: 63  VLLKEWIAENPAALGDRVVERWGGDLPFLFKVLSVAKALSIQAHPDK 109



 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 124 SEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLEEGQSIYIGANEPHAYLKG 173
           +++  L  R+  ++PGD G    F  NYV L  G+++Y+GANEPHAYL G
Sbjct: 225 TDKEELVLRLEKQYPGDVGVLSAFFLNYVKLNPGEALYLGANEPHAYLSG 274


>gnl|CDD|216382 pfam01238, PMI_typeI, Phosphomannose isomerase type I.  This is a
           family of Phosphomannose isomerase type I enzymes (EC
           5.3.1.8).
          Length = 373

 Score =  102 bits (256), Expect = 4e-26
 Identities = 50/107 (46%), Positives = 64/107 (59%), Gaps = 4/107 (3%)

Query: 3   LSFSIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSEN 62
           L   +Q Y WGKIG +S +A+L   +  ++D+DK YAELW+GTHP GPS +L+   R   
Sbjct: 4   LQCGVQNYAWGKIGSNSALAKLFAYSIPSIDEDKPYAELWMGTHPKGPSKVLNGQLRDVT 63

Query: 63  LESWIKNNPHCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSKLQ 109
           L          LG     +FG  LPFL KVLSV+K LSIQ+HP K  
Sbjct: 64  LSELSAE----LGELFGKRFGGNLPFLFKVLSVEKPLSIQVHPDKEL 106



 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 129 LFSRVYSRFPGDCGCFCVFLFNYVCLEEGQSIYIGANEPHAYLKG 173
           L  R+  ++P D G F +FL N+V L  G+++++ AN+PHAYL G
Sbjct: 230 LIDRLNEQYPDDIGLFRLFL-NHVKLNPGEAMFLKANDPHAYLSG 273


>gnl|CDD|224399 COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and
           metabolism].
          Length = 312

 Score =  100 bits (252), Expect = 6e-26
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 35/188 (18%)

Query: 6   SIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLES 65
            +Q Y WG     + +A L     G     +   ELW G HP+GPS++ +   + ++L  
Sbjct: 9   VLQEYIWGG----TALADLF----GYDPPSEPIGELWAGAHPNGPSTVANGPGQGKSLSE 60

Query: 66  WIKNNPHCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSKLQ---------------- 109
            I +    LG     +F    P L K+L  +  LSIQ+HPS                   
Sbjct: 61  LIADPRELLGNKSFDRF----PLLFKILDANDPLSIQVHPSDEYAEEGEEGILGKTECWY 116

Query: 110 ----YPGCQIIFYDESSRSEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLEEGQSIYIGAN 165
                   ++I+    ++S+                G F   L N V L+ G++ ++ A 
Sbjct: 117 YKDANHKPELIYGLTPAKSKP---AIEELKEMIDRGGLFDPLLLNRVKLKPGEAFFLPAG 173

Query: 166 EPHAYLKG 173
            PHAYLKG
Sbjct: 174 TPHAYLKG 181


>gnl|CDD|232879 TIGR00218, manA, mannose-6-phosphate isomerase, class I.  The names
           phosphomannose isomerase and mannose-6-phosphate
           isomerase are synonomous. This family contains two
           rather deeply branched groups. One group contains an
           experimentally determined phosphomannose isomerase of
           Streptococcus mutans as well as three uncharacterized
           paralogous proteins of Bacillus subtilis, all at more
           than 50 % identity to each other, plus a more distant
           homolog from Archaeoglobus fulgidus. The other group
           contains members from E. coli, budding yeast, Borrelia
           burgdorferi, etc [Energy metabolism, Sugars].
          Length = 303

 Score = 80.6 bits (199), Expect = 2e-18
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 36/184 (19%)

Query: 7   IQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLG-THPSGPSSILSQCSRSENLES 65
           +   +WG     + +A L     G     +   E W G  HP GPS++L+   +  +L  
Sbjct: 11  LVERDWGG----TALADLF----GYSIPSQQTGECWAGSAHPKGPSTVLN--GKGVSLID 60

Query: 66  WIKNNPHCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHPS----------KLQYPGCQI 115
             + +   LG        ++ PFL+KVL   K LSIQ+HP           +L    C  
Sbjct: 61  LWEKHRELLGRAD----EKRFPFLVKVLDAAKPLSIQVHPDDKYAEIHEEGELGKTECWY 116

Query: 116 IF-YDESSRSEEMNLFSRVYSRFPG-----DCGCFCVFLFNYVCLEEGQSIYIGANEPHA 169
           I    +++      +   + +         + G F + L N + L+ G   Y+ +  PHA
Sbjct: 117 IIDCGKAAEI----IKEHLKNSKEELKTKIEDGLFKL-LLNRIKLKPGDFFYVRSGTPHA 171

Query: 170 YLKG 173
           Y  G
Sbjct: 172 YKGG 175


>gnl|CDD|185085 PRK15131, PRK15131, mannose-6-phosphate isomerase; Provisional.
          Length = 389

 Score = 80.8 bits (200), Expect = 4e-18
 Identities = 41/103 (39%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 6   SIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLES 65
           S+Q Y WG     SK A L E  G     ++  AELW+G HP   S +        +L  
Sbjct: 7   SVQNYAWG-----SKTA-LTELYGIANPDNQPMAELWMGAHPKSSSRVQDANGDIVSLRD 60

Query: 66  WIKNNPHC-LGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSK 107
            I+++    LG  V  +FGE LPFL KVL   + LSIQ+HP+K
Sbjct: 61  VIESDKSALLGEAVAKRFGE-LPFLFKVLCAAQPLSIQVHPNK 102



 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 132 RVYSRF-PGDCGCFCVFLFNYVCLEEGQSIYIGANEPHAYLKG 173
           R+ S F P D G F   L N V L  G+++++ A  PHAYL+G
Sbjct: 218 RLISEFYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQG 260


>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain.  This family represents the
           conserved barrel domain of the 'cupin' superfamily
           ('cupa' is the Latin term for a small barrel).
          Length = 70

 Score = 27.2 bits (61), Expect = 1.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 154 LEEGQSIYIGANEPHAY 170
           L+ G S+Y  A  PH +
Sbjct: 40  LKAGDSVYFPAGVPHRF 56


>gnl|CDD|223947 COG1015, DeoB, Phosphopentomutase [Carbohydrate transport and
           metabolism].
          Length = 397

 Score = 28.4 bits (64), Expect = 2.3
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 50  PSSILSQCSRSENLESWIKNNPHCLGTDVISQFGE---KLPFLLKVLSVDKALSIQMH 104
           P  +L +  R    +  I  N H  GT++I   GE   K    +   S D    I  H
Sbjct: 112 PEELLDEIERRTGRKG-ILGNKHASGTEIIKDLGEEHMKTGKPIVYTSADSVFQIAAH 168


>gnl|CDD|223734 COG0662, {ManC}, Mannose-6-phosphate isomerase [Carbohydrate
           transport and metabolism].
          Length = 127

 Score = 27.4 bits (61), Expect = 3.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 154 LEEGQSIYIGANEPH 168
           ++ G S+YI A  PH
Sbjct: 79  VKAGDSVYIPAGTPH 93


>gnl|CDD|235876 PRK06849, PRK06849, hypothetical protein; Provisional.
          Length = 389

 Score = 27.7 bits (62), Expect = 4.3
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 38  YAELWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEKLPFLLKVLSV 95
              LW          + S+    +  + W+K+   C G D I Q  + LPFL +  S+
Sbjct: 313 AMLLWRLP------GLRSK----QKRKRWLKD--LCSGPDAIYQHNDPLPFLYQFHSL 358


>gnl|CDD|224829 COG1917, COG1917, Uncharacterized conserved protein, contains
           double-stranded beta-helix domain [Function unknown].
          Length = 131

 Score = 26.8 bits (59), Expect = 4.8
 Identities = 5/17 (29%), Positives = 6/17 (35%)

Query: 154 LEEGQSIYIGANEPHAY 170
           L+ G  I I     H  
Sbjct: 86  LKAGDVIIIPPGVVHGL 102


>gnl|CDD|222265 pfam13615, Racemase_4, Putative alanine racemase.  This is a family
           of eukaryotic proteins which are putatively alanine
           racemase.
          Length = 102

 Score = 26.0 bits (58), Expect = 5.8
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 127 MNLFSRVYSRFPGDC-GCFCVFLFN 150
           ++L SRVYSR  G   G F + L  
Sbjct: 20  LHLLSRVYSRTDGLPLGKFSLNLTG 44


>gnl|CDD|222607 pfam14225, MOR2-PAG1_C, Cell morphogenesis C-terminal.  This family
           is the conserved C-terminal region of proteins that are
           involved in cell morphogenesis.
          Length = 258

 Score = 26.7 bits (60), Expect = 7.4
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 17/75 (22%)

Query: 73  CLGTDVISQFGEKLPFLLKVLS---------VDKALSIQMHPSKLQ--YPGCQIIFYD-- 119
           CL T    +F E L  L K L          V   +S Q  P K +  + G Q +     
Sbjct: 15  CLETIHEHEFLEALRLLNKFLDKIDLDDPDVVQCLISGQ--PPKWEGKFEGLQPLLLKGL 72

Query: 120 ESSRSEE--MNLFSR 132
            SS S E  + L SR
Sbjct: 73  RSSASLELTLELLSR 87


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0714    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,589,363
Number of extensions: 839031
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 21
Length of query: 198
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 106
Effective length of database: 6,857,034
Effective search space: 726845604
Effective search space used: 726845604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)