RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12635
(198 letters)
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A
{Candida albicans} SCOP: b.82.1.3
Length = 440
Score = 101 bits (251), Expect = 2e-25
Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
Query: 6 SIQTYEWGKIGLDSKVAQLVEAA--GGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENL 63
Q Y+WGKIG S VAQ V + T+D+ K YAELW+GTHPS PS + +++ L
Sbjct: 11 GYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKAIDLNNQT--L 68
Query: 64 ESWIKNNP-HCLGTDVISQFGE--KLPFLLKVLSVDKALSIQMHPSKLQ----YPGCQII 116
+ P LG +I++FG +LPFL KVLS++K LSIQ HP K +
Sbjct: 69 RDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQLHAADPKN 128
Query: 117 FYDESSRSEEMNLFSRVYSRFPGDCGC 143
+ D++ + E + F G CG
Sbjct: 129 YPDDNHKPEMA----IAVTDFEGFCGF 151
Score = 54.2 bits (129), Expect = 4e-09
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 120 ESSRSEEMNLFSRVYSRFPGDCGCFC-VFLFNYVCLEEGQSIYIGANEPHAYLKG 173
+ S L R+ +FP D G FC L N+V L +G+++++ A +PHAY+ G
Sbjct: 235 KDIDSRLPELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISG 289
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A
{Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Length = 394
Score = 90.6 bits (224), Expect = 7e-22
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 6 SIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLES 65
S+Q Y WG + + +L G + + AELW+G HP S I + + +L
Sbjct: 10 SVQNYAWGS---KTALTEL---YGIANPQQQPMAELWMGAHPKSSSRITTANGETVSLRD 63
Query: 66 WIKNNP-HCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSKLQ 109
I+ N LG V ++FGE LPFL KVL + LSIQ+HP+K
Sbjct: 64 AIEKNKTAMLGEAVANRFGE-LPFLFKVLCAAQPLSIQVHPNKRN 107
Score = 53.2 bits (127), Expect = 9e-09
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 120 ESSRSEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLEEGQSIYIGANEPHAYLKG 173
S + E + +P D G F L N V L G+++++ A PHAYL+G
Sbjct: 210 NSQQGEPWQTIRVISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQG 263
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose
6-phosphate, PSI, protein structure initiative; 1.80A
{Bacillus subtilis} SCOP: b.82.1.3
Length = 319
Score = 54.3 bits (130), Expect = 3e-09
Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 16/151 (10%)
Query: 35 DKNYAELW-LGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEKLPFLLKVL 93
++ E W + HP GPS++ + + + L + + G G++ P L K+L
Sbjct: 35 SESTGECWAISAHPKGPSTVANGPYKGKTLIELWEEHREVFG----GVEGDRFPLLTKLL 90
Query: 94 SVDKALSIQMHPSK---LQYPGCQI------IFYDESSRSEEMNLFSRV-YSRFPGDCGC 143
V + SI++HP + ++ D +E + + +
Sbjct: 91 DVKEDTSIKVHPDDYYAGENEEGELGKTECWYIIDCKENAEIIYGHTARSKTELVTMINS 150
Query: 144 FCVF-LFNYVCLEEGQSIYIGANEPHAYLKG 173
L + ++ G Y+ + HA KG
Sbjct: 151 GDWEGLLRRIKIKPGDFYYVPSGTLHALCKG 181
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus}
SCOP: b.82.1.3
Length = 300
Score = 51.1 bits (122), Expect = 3e-08
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 35 DKNYAELW-LGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEKLPFLLKVL 93
E W H S PS++L + + ++ + L +F + P L++++
Sbjct: 33 QSGIGESWEFSAHTSRPSTVLVK-GQQLSMIELFSKHRDELLGRAAEKFSK-FPILVRLI 90
Query: 94 SVDKALSIQMHPSK 107
+ +HPS
Sbjct: 91 DAASPTQVHVHPSD 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.009
Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 35/120 (29%)
Query: 41 LWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEKLPFLLKVLSVDKALS 100
+W S ++++ + +E K + IS +P + L V
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKES-------TIS-----IPSIYLELKVKLENE 442
Query: 101 IQMH---------PSKLQYPGCQIIFYD------------ESSRSEEMNLFSRVYS--RF 137
+H P + D E M LF V+ RF
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.020
Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 49/186 (26%)
Query: 1 MELSFSIQTYEWGKIG-L-DSKVAQLVEAAGGTVDKDKNY--AELW---LG--THPSGPS 51
+E + T + L + L E G D+ AEL LG + PS
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 52 SILSQCSRSENLESWIK---------NNPHCLGTDVISQFGEKLPFLLKVL-SVDKALSI 101
+ L + N+ H L ++ + L +++ + A +
Sbjct: 76 K---VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 102 ------QMHPSKLQYPGCQIIFYDESSRSEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLE 155
+ S L F + +++ + F G G E
Sbjct: 133 AKRPFDKKSNSAL--------F--RAVGEGN----AQLVAIFGGQ-GN------TDDYFE 171
Query: 156 EGQSIY 161
E + +Y
Sbjct: 172 ELRDLY 177
Score = 33.5 bits (76), Expect = 0.048
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 29/104 (27%)
Query: 87 PFLLKVLSVDKALSIQMHPSKLQYPGCQI--IFY-------------DESSRSEEMNLFS 131
P L S++ L + P+ + Q+ F DE + E L
Sbjct: 8 PLTLSHGSLEHVLLV---PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE--LVG 62
Query: 132 RVYSRF------PGDCGCFCVFLFNYVCLEEGQSIYIGANEPHA 169
+ + + P G F L +CL E ++ Y+ N+ HA
Sbjct: 63 K-FLGYVSSLVEPSKVGQFDQVLN--LCLTEFENCYLEGNDIHA 103
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein
binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo
sapiens} PDB: 3al3_A*
Length = 235
Score = 30.9 bits (69), Expect = 0.19
Identities = 12/64 (18%), Positives = 24/64 (37%)
Query: 19 SKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDV 78
+ +L+++ G V + TH + L N+ N +CL T+
Sbjct: 151 AGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEY 210
Query: 79 ISQF 82
I+ +
Sbjct: 211 IADY 214
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Length = 114
Score = 28.9 bits (65), Expect = 0.49
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 154 LEEGQSIYIGANEPHA 169
L +G +Y+GA H
Sbjct: 78 LHQGDLLYLGAGAAHD 93
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional
regulaator, strucutral genomics, protein structure
initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8
b.82.1.15
Length = 192
Score = 28.8 bits (65), Expect = 0.81
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 154 LEEGQSIYIGANEPHAY 170
L++G+ I +++PH Y
Sbjct: 148 LQQGEHIRFFSDQPHGY 164
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc,
fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP:
a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A
1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Length = 198
Score = 28.7 bits (64), Expect = 0.90
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 154 LEEGQSIYIGANEPHAY 170
L G S+++ + PHA+
Sbjct: 166 LPTGASMFVEEHVPHAF 182
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization
module, P-BODY component, asymmetric assembly; 2.31A
{Homo sapiens}
Length = 51
Score = 26.7 bits (58), Expect = 1.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 44 GTHPSGPSSILSQCSRSENLESWIKNNPHCLGT 76
G H + S ILS+ + L IKN+ L T
Sbjct: 1 GPHMADLSIILSKSQLQDTLIHLIKNDSSFLST 33
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved
hypothetical protein, PSI, PR structure initiative;
2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Length = 115
Score = 27.4 bits (61), Expect = 1.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 154 LEEGQSIYIGANEPHAY 170
+ EGQ+I + A PHA
Sbjct: 82 VAEGQTIVMPAGIPHAL 98
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint
for structural genomics, JCSG; 1.65A {Thermotoga
maritima} SCOP: b.82.1.10
Length = 126
Score = 27.5 bits (61), Expect = 1.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 154 LEEGQSIYIGANEPHAY 170
+EEG I++ NE H +
Sbjct: 90 VEEGFYIFVEPNEIHGF 106
>2q30_A Uncharacterized protein; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans
subsp}
Length = 110
Score = 27.1 bits (60), Expect = 2.2
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 151 YVCLEEGQSIYIGANEPHA 169
+ G + + PH
Sbjct: 75 VIPAPRGAVLVAPISTPHG 93
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family,
metal-binding site, beta barrel, PSI-2, NYSG structural
genomics; 2.00A {Halorhodospira halophila SL1}
Length = 167
Score = 27.7 bits (61), Expect = 2.2
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 154 LEEGQSIYIGANEPHAY 170
L +YI + H
Sbjct: 98 LTPLDCVYIAPHAWHQI 114
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
unknown function; HET: MSE; 2.07A {Leptotrichia
buccalis}
Length = 227
Score = 27.2 bits (60), Expect = 2.9
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 154 LEEGQSIYIGANEPHA 169
+++G+S + AN PHA
Sbjct: 195 VKKGESAVLPANIPHA 210
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.60A {Desulfitobacterium hafniense}
Length = 114
Score = 26.6 bits (59), Expect = 3.1
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 154 LEEGQSIYIGANEPHA 169
L + + A++ HA
Sbjct: 80 LVPEDVLMVPAHKIHA 95
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural
genomics, PSI-2, protein structur initiative; 1.85A
{Rhodopseudomonas palustris}
Length = 156
Score = 26.8 bits (59), Expect = 3.6
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 154 LEEGQSIYIGANEPHAY 170
+ +G ++I H +
Sbjct: 86 VAQGDLVFIPPMTWHQF 102
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2
fold, unknown function, PSI-2, structure initiative;
HET: MSE; 2.30A {Rhodospirillum rubrum}
Length = 166
Score = 26.9 bits (59), Expect = 3.7
Identities = 2/17 (11%), Positives = 5/17 (29%)
Query: 154 LEEGQSIYIGANEPHAY 170
+ + I H +
Sbjct: 95 VAPYDLVTIPGWSWHQF 111
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A
{Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1
b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A*
2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A*
Length = 848
Score = 27.4 bits (60), Expect = 4.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 155 EEGQSIYIGANEPHAYLKGGNYKPDHSNEMRV 186
++G+S Y N + KG NY P + V
Sbjct: 318 KDGESFYFEVNGIPMFAKGANYIPQDALLPNV 349
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase
enzyme family, structural genomics, JOIN for structural
genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Length = 333
Score = 27.0 bits (60), Expect = 5.1
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 35/115 (30%)
Query: 45 THPSGPSSILSQCSR--SENLESWIKNN----------PHCLGTD------VISQFGEKL 86
P+G ++L S + + ++ P + +I G+ L
Sbjct: 39 RSPTGAKAVLMDWSPEEGGDTQPFVDLAQYLRNLDISAPEIYAEEHARGLLLIEDLGDAL 98
Query: 87 PFLLKVLSVDKA-----------LSIQMHPSKLQYPGCQIIFYDESSRSEEMNLF 130
+V++ D A L I +H ++ D + SE L
Sbjct: 99 --FTEVINNDPAQEMPLYRAAVDLLIHLH----DAQTPELARLDPETLSEMTRLA 147
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 5.5
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 21/43 (48%)
Query: 156 EGQSIYIGANEPHAYLKGGNYKPDHSNEMRVCQKNNNNSSGPS 198
E Q++ + A LK Y D S P+
Sbjct: 18 EKQAL----KKLQASLK--LYADD---------------SAPA 39
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology,
structural genomics, GEBA, midwest center structural
genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Length = 126
Score = 25.6 bits (56), Expect = 7.3
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 154 LEEGQSIYIGANEPHAY 170
L G + I H
Sbjct: 83 LRPGMAYTIPGGVRHRA 99
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix
domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella
pneumoniae subsp}
Length = 125
Score = 25.6 bits (56), Expect = 7.7
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 154 LEEGQSIYIGANEPHA 169
L+ G + H
Sbjct: 83 LKAGDIAIAKPGQVHG 98
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis,
anticapsin synthesis, BI-Cu double stranded beta helix,
antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus
subtilis} PDB: 3h7y_A* 3h9a_A*
Length = 243
Score = 25.9 bits (56), Expect = 8.5
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 154 LEEGQSIYIGANEPHAYLKGGN 175
++ G + + E H +
Sbjct: 188 MKFGTAYFCEPREDHGAINRSE 209
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.417
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,891,073
Number of extensions: 152314
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 35
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)