RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12635
(198 letters)
>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida
albicans) [TaxId: 5476]}
Length = 440
Score = 120 bits (301), Expect = 6e-33
Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 7/107 (6%)
Query: 6 SIQTYEWGKIGLDSKVAQLVEAAGGT--VDKDKNYAELWLGTHPSGPSSILSQCSRSENL 63
Q Y+WGKIG S VAQ V + + +D+ K YAELW+GTHPS PS + +++ L
Sbjct: 11 GYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKAIDLNNQT--L 68
Query: 64 ESWIKNNP-HCLGTDVISQFGE--KLPFLLKVLSVDKALSIQMHPSK 107
+ P LG +I++FG +LPFL KVLS++K LSIQ HP K
Sbjct: 69 RDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSIEKVLSIQAHPDK 115
Score = 49.4 bits (117), Expect = 6e-08
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 118 YDESSRSEEMNLFSRVYSRFPGDCGCFCVFL-FNYVCLEEGQSIYIGANEPHAYLKG 173
+ S L R+ +FP D G FC L N+V L +G+++++ A +PHAY+ G
Sbjct: 233 VFKDIDSRLPELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISG 289
>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus
subtilis [TaxId: 1423]}
Length = 315
Score = 82.8 bits (204), Expect = 8e-20
Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 24/155 (15%)
Query: 35 DKNYAELW-LGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEKLPFLLKVL 93
++ E W + HP GPS++ + + + L + + G G++ P L K+L
Sbjct: 31 SESTGECWAISAHPKGPSTVANGPYKGKTLIELWEEHREVFGG----VEGDRFPLLTKLL 86
Query: 94 SVDKALSIQMHPSKLQYPGCQIIFYDESSRSEEMNLFSRVYSRFPGDCGCFCVF------ 147
V + SI++HP Y G + E G
Sbjct: 87 DVKEDTSIKVHPDD-YYAGEN---EEGELGKTECWYIIDCKENAEIIYGHTARSKTELVT 142
Query: 148 ---------LFNYVCLEEGQSIYIGANEPHAYLKG 173
L + ++ G Y+ + HA KG
Sbjct: 143 MINSGDWEGLLRRIKIKPGDFYYVPSGTLHALCKG 177
>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase
AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 299
Score = 79.3 bits (195), Expect = 2e-18
Identities = 24/159 (15%), Positives = 45/159 (28%), Gaps = 28/159 (17%)
Query: 34 KDKNYAELW-LGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEKLPFLLKV 92
+ E W H S PS++L + + ++ + L +F + P L+++
Sbjct: 31 RQSGIGESWEFSAHTSRPSTVLVK-GQQLSMIELFSKHRDELLGRAAEKFSK-FPILVRL 88
Query: 93 LSVDKALSIQMHPSKLQYPGCQIIFYDESSRSEEMNLFSRVYSRFPGDCG---------- 142
+ + +HPS + E L V+++ G
Sbjct: 89 IDAASPTQVHVHPSDKAAE----SLGEAEGGVESAWL---VFNKGKAYAGFKEDVKIEEL 141
Query: 143 --------CFCVFLFNYVCLEEGQSIYIGANEPHAYLKG 173
L N + I PHA
Sbjct: 142 EEKLKEEDFDFKTLLNTFETTPYDTFVIRPGIPHAGEGL 180
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus
japonicus [TaxId: 34381]}
Length = 348
Score = 30.2 bits (67), Expect = 0.16
Identities = 13/122 (10%), Positives = 24/122 (19%), Gaps = 19/122 (15%)
Query: 74 LGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSKLQYPGCQIIFYDESSRSEEMNLFSRV 133
T + + + S+ Y ++ L +
Sbjct: 194 ANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTIS 253
Query: 134 YSRFPGDC-----------------GCFCVFLFNY--VCLEEGQSIYIGANEPHAYLKGG 174
S P G V + +Y L G +I Y
Sbjct: 254 MSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEA 313
Query: 175 NY 176
+
Sbjct: 314 YF 315
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus
faecalis [TaxId: 1351]}
Length = 250
Score = 28.9 bits (64), Expect = 0.40
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 152 VCLEEGQSIYIGANEPHAYLKGGNYKP 178
+E+G I++ A P A G +P
Sbjct: 209 YPVEKGDYIFMSAYVPQAAYAVGREEP 235
Score = 25.0 bits (54), Expect = 6.8
Identities = 4/17 (23%), Positives = 4/17 (23%)
Query: 154 LEEGQSIYIGANEPHAY 170
LE G Y
Sbjct: 92 LEAGGYAYFTPEMKMYL 108
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli
[TaxId: 562]}
Length = 253
Score = 28.6 bits (63), Expect = 0.43
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 152 VCLEEGQSIYIGANEPHAYLKGG 174
+ +++G I++GA A G
Sbjct: 212 IPVKKGDYIFMGAYSLQAGYGVG 234
Score = 25.5 bits (55), Expect = 4.0
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 152 VCLEEGQSIYIGANEPHAY 170
L EG +Y +
Sbjct: 93 FALSEGGYLYCPPGSLMTF 111
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 273
Score = 28.5 bits (63), Expect = 0.46
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 152 VCLEEGQSIYIGANEPHAYLKGGN 175
V +E G +++ A P A GG
Sbjct: 230 VEVEAGDFMWLRAFCPQACYSGGP 253
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 245
Score = 27.7 bits (61), Expect = 0.71
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 154 LEEGQSIYIGANEPHAYLKGGN 175
+ G I++GA+ P Y G
Sbjct: 208 VTAGDIIWMGAHCPQWYGALGR 229
>d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB
{Streptococcus mutans [TaxId: 1309]}
Length = 119
Score = 27.0 bits (60), Expect = 0.76
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 45 THPSG-PSSILSQCSRSENLESWIKNNPHCLGTDVISQFGE---KLPFLLKVLSVDKALS 100
T +G P I+S+ + + + N GT VI FG + L+ S D L
Sbjct: 3 TFWNGFPEEIISKIEKFSGRKVIREANKPYSGTAVIDDFGPRQMETGELIIYTSADPVLQ 62
Query: 101 IQMH----PSKLQYPGCQIIFYDESSRSEEMNLFSRVYSR-FPGDCGCF 144
I H P Y C+ + L R+ +R + G F
Sbjct: 63 IAAHEDVIPLDELYRICEYA--RSITLERPALL-GRIIARPYVGKPRNF 108
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus
thermophilus [TaxId: 274]}
Length = 93
Score = 26.0 bits (57), Expect = 1.2
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 113 CQIIFYDESSRSEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLEEGQSIYI 162
++ + + + L V PGD F V L V LEEG I
Sbjct: 27 RPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAI 76
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 25.7 bits (56), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 31 TVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIK 68
V+ D LW+G P+ + I+ + S EN + WIK
Sbjct: 74 HVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIK 111
>d2bi0a2 d.38.1.4 (A:186-337) Hypothetical protein Rv0216/MT0226
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 152
Score = 26.1 bits (57), Expect = 2.1
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 18 DSKVAQLVEAAGGTVDKDKNYAELWLGTHP 47
++ + V A L L
Sbjct: 21 AGIAGAVLHSTADLVSGAPELARLTLNIAA 50
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
subtilis [TaxId: 1423]}
Length = 330
Score = 26.0 bits (56), Expect = 3.8
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 154 LEEGQSIYIGANEPHAYLKGGN 175
L G I A PH+Y +
Sbjct: 85 LISGDYANIPAGTPHSYRMQSH 106
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 25.7 bits (55), Expect = 4.2
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 101 IQMHPSKLQYPGCQIIFYDESSRSEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLEEGQSI 160
I P + + + R +++ + Y RFP F + + G +
Sbjct: 203 ILFPPDQFECL-YPYPVHHPCDRQSQVDFDNPDYERFP----NFQNVVGYETVVGPGDVL 257
Query: 161 YIGANEPH 168
YI H
Sbjct: 258 YIPMYWWH 265
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 93
Score = 24.3 bits (53), Expect = 5.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 151 YVCLEEGQSIYIGANE 166
V L EGQSI A +
Sbjct: 78 IVRLAEGQSIEALAGQ 93
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase
Fom4, C-terminal domain {Streptomyces wedmorensis
[TaxId: 43759]}
Length = 122
Score = 24.5 bits (53), Expect = 5.4
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 152 VCLEEGQSIYIGANEPHAY 170
L G S+++ + PHA+
Sbjct: 88 ALLPTGASMFVEEHVPHAF 106
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos
taurus), mitochondrial [TaxId: 9913]}
Length = 103
Score = 24.2 bits (52), Expect = 5.9
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 113 CQIIFYDESSRSEEMNLFSRVYSRFPGDCGCFCVFLFNYVCLEEGQSIYI 162
++F + + L PG+ + L + LE+GQ +
Sbjct: 27 MPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTL 76
>d3btaa2 b.42.4.2 (A:1079-1295) Botulinum neurotoxin {Clostridium
botulinum, serotype A [TaxId: 1491]}
Length = 217
Score = 24.9 bits (54), Expect = 7.8
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 67 IKNNPHCLGTDVISQFGEKLPFLLKVLSVD---KALSIQMHPSKLQYPGCQIIFYDES 121
+KN + L T+ EK+ L++ V + + ++ + C++ D +
Sbjct: 107 VKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNKCKMNLQDNN 164
>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese
five-pace snake (Agkistrodon acutus), acutolysin C
[TaxId: 36307]}
Length = 197
Score = 24.4 bits (52), Expect = 8.3
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 48 SGPSSILSQCSRSENLESWIKNNPHCL 74
SGP+ S CS+ + + P CL
Sbjct: 169 SGPAKSFSDCSKHDYQSFLTIHKPQCL 195
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.417
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 729,619
Number of extensions: 31448
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 25
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)