Query psy12637
Match_columns 270
No_of_seqs 177 out of 1245
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 15:42:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2757|consensus 100.0 1.3E-76 2.8E-81 543.8 18.8 264 1-267 2-348 (411)
2 PLN02288 mannose-6-phosphate i 100.0 2.6E-70 5.6E-75 519.5 22.8 262 1-264 2-346 (394)
3 PRK15131 mannose-6-phosphate i 100.0 3.2E-63 7E-68 471.6 21.5 249 1-262 2-331 (389)
4 PF01238 PMI_typeI: Phosphoman 100.0 1.2E-61 2.7E-66 459.4 11.4 261 1-265 2-349 (373)
5 COG1482 ManA Phosphomannose is 100.0 3.4E-43 7.3E-48 322.9 7.7 230 1-261 4-251 (312)
6 TIGR00218 manA mannose-6-phosp 100.0 6.9E-40 1.5E-44 302.9 9.0 229 1-262 2-245 (302)
7 PF13808 DDE_Tnp_1_assoc: DDE_ 50.8 35 0.00075 25.8 4.6 54 137-199 30-85 (90)
8 COG0220 Predicted S-adenosylme 46.9 17 0.00037 32.5 2.8 73 50-128 50-134 (227)
9 PF03172 Sp100: Sp100 domain; 42.0 9.2 0.0002 30.2 0.2 23 125-147 12-35 (103)
10 KOG0721|consensus 33.8 9.5 0.0002 34.2 -1.0 14 95-108 119-132 (230)
11 PF06757 Ins_allergen_rp: Inse 29.0 1.5E+02 0.0032 25.2 5.6 39 175-220 140-178 (179)
12 PTZ00120 D-tyrosyl-tRNA(Tyr) d 25.5 31 0.00066 29.2 0.7 39 119-167 53-101 (154)
13 PF00851 Peptidase_C6: Helper 20.6 60 0.0013 32.2 1.8 151 9-168 201-368 (453)
No 1
>KOG2757|consensus
Probab=100.00 E-value=1.3e-76 Score=543.78 Aligned_cols=264 Identities=42% Similarity=0.741 Sum_probs=242.6
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCC--CCCCCCCceeeeeeecCCCCeEEccCCCCCccHHHHHHhCCCcCCchh
Q psy12637 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGG--TVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDV 78 (270)
Q Consensus 1 ~~L~~~~~~y~WG~~g~~s~i~~l~~~~~~--~~~~~~p~aE~W~g~hp~~pS~v~~~~~~~~~L~~~i~~~p~~LG~~~ 78 (270)
|||+|.+|+|+||+.|++|++++|+...++ .||.++||||+||||||+|||.|.. ++.+|++||++||+.+|+++
T Consensus 2 ~rL~c~Vk~Y~WGk~G~~S~varlaaa~d~~~~id~~~PYAElWMGTH~~Gps~v~~---~~~tL~~~l~~nP~~lg~~v 78 (411)
T KOG2757|consen 2 FRLKCHVKQYAWGKKGSESLVARLAAAGDPSFQIDQDKPYAELWMGTHPSGPSHVKE---TGETLSQWLAKNPELLGNKV 78 (411)
T ss_pred ceeeeeeeeccccccCcHHHHHHHHHcCCCccccCCCCchHHhhcccCCCccHhhhh---ccccHHHHHhhChhhhcchh
Confidence 689999999999999999999999987766 8999999999999999999999988 67899999999999999999
Q ss_pred HhhhcCCCcchhhcccCCCCCccccCCCHHHHHHhhccCCCCCCCCCCCceeEEEccCceecccCCchHHHHhhhhChHH
Q psy12637 79 ISQFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKLHREFPDIYKDENHKPELAIALSKFEALCGFKPLERIKKNIEETKE 158 (270)
Q Consensus 79 ~~~fg~~lP~L~KvLs~~~~LSIQvHPd~~~A~~~~~~~p~~Y~D~n~KpE~~~aLt~f~~l~Gfr~~~ei~~~l~~~~e 158 (270)
.++||.+|||||||||++++||||+||||++|+++|.++|.+|||+||||||+||||+|+++||||+.+||.++|+++||
T Consensus 79 ~~k~~~~LpFLFKVLSI~k~LSIQaHP~K~lak~LH~~dP~~YpDdNHKPEmAiAlT~Fe~LcGFrp~~eI~~~l~~~pe 158 (411)
T KOG2757|consen 79 ADKFGCDLPFLFKVLSINKPLSIQAHPNKELAKKLHKTDPKHYPDDNHKPEMAIALTPFEALCGFRPLEEIKQFLDTIPE 158 (411)
T ss_pred HhhcCCCCceeeeEeeecceeeeeecCCHHHHHHHhhhCcccCCCCCCCchheeecchHhhhhCccCHHHHHHHHHhChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHhcCC------HHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc------------------------
Q psy12637 159 LQAVIGESLVKSMVSCMN------IEVFKEIFHAIMSAPQAQVEKQLCLLNETIHR------------------------ 208 (270)
Q Consensus 159 l~~~i~~~~~~~~~~~~~------~~~l~~~f~~lm~~~~~~~~~~~~~l~~rl~~------------------------ 208 (270)
|++++++.++.++....+ ...|+.||+.+|.++...++.++++|++|++.
T Consensus 159 ~~~LvGeEa~~q~~~~~~~e~e~~~~~l~~~Fs~lM~~~~~~i~~~v~~L~~r~~~~~~~~~~~d~~eli~~l~kqfP~D 238 (411)
T KOG2757|consen 159 LRELVGEEAARQLKDLTSHEDEDSKKVLKLCFSRLMKAEENVIKIQVSKLVKRLQNELNGFNLTDLEELILKLNKQFPGD 238 (411)
T ss_pred HHHHhhHHHHHHHHhhccchhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhccccccCcccHHHHHHHHHhhCCCc
Confidence 999999999998876554 25799999999999999999999999999773
Q ss_pred -----------------------------------------------CC----cccHHHHhhhcccccCCCCccccccee
Q psy12637 209 -----------------------------------------------TG----YSVIATLCSLLNYKFGPPEAKLLIPVI 237 (270)
Q Consensus 209 -----------------------------------------------aG----~iDv~~L~~~l~~~~~~~~~~~~~p~~ 237 (270)
|| |+||++||+||+|+.+......+....
T Consensus 239 IGvfs~~FlN~~~L~PGEA~yL~AnepHAYlsGdcvECMA~SDNvIRAGlTPK~~Dv~tL~smL~Y~~~~~~p~~~~~~~ 318 (411)
T KOG2757|consen 239 IGVFSPFFLNYVRLNPGEAIYLEANEPHAYLSGDCVECMACSDNVIRAGLTPKYIDVDTLCSMLTYKLTEQQPKLFPRSR 318 (411)
T ss_pred ceeeeHhhhhheecCCCceeeecCCCcceeecCceeEEecccCceeeccCCCccccHHHHHhHhcccccccccccCCccC
Confidence 56 899999999999998854333334444
Q ss_pred cCCCeEEecCCCCCeeEEEEEecCCCCCCc
Q psy12637 238 KDESCRFYLPPVADFGVAKIQVSSYHSPHS 267 (270)
Q Consensus 238 ~~~~~~~y~~p~~eF~l~~~~l~~g~~~~~ 267 (270)
.++.+.+|.||++||+|.+++++.|++..+
T Consensus 319 ~~~~~~~Y~Ppi~eF~v~~~~v~~g~~~~~ 348 (411)
T KOG2757|consen 319 LDGYVLLYDPPIEEFAVLETKVPTGESYKF 348 (411)
T ss_pred CCCceeEeCCCCcceeEEEeecCCCceEEe
Confidence 455688999999999999999999988654
No 2
>PLN02288 mannose-6-phosphate isomerase
Probab=100.00 E-value=2.6e-70 Score=519.49 Aligned_cols=262 Identities=44% Similarity=0.774 Sum_probs=235.4
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCC-CCCCCCCceeeeeeecCCCCeEEccCCCCCccHHHHHHhCCCcCCchhH
Q psy12637 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGG-TVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVI 79 (270)
Q Consensus 1 ~~L~~~~~~y~WG~~g~~s~i~~l~~~~~~-~~~~~~p~aE~W~g~hp~~pS~v~~~~~~~~~L~~~i~~~p~~LG~~~~ 79 (270)
|+|+|.+|+|+||++|+.|+|++|+|..+. .+++++||||+|||+||++||.|.+++..+++|.++|+++|++||....
T Consensus 2 ~~L~~~vq~YaWG~~~~~s~ia~l~~~~~~~~~~~~~p~aElW~g~hp~~pS~v~~~~~~~~~L~~~i~~~~~~lG~~~~ 81 (394)
T PLN02288 2 LRLRCAVQNYDWGRIGSESEVARLAAANSGSDVDPDKPYAELWMGTHPSGPSFVVATGKGSVLLKEWIAENPAALGDRVV 81 (394)
T ss_pred eeeeCCccccCCCCCChHHHHHHHhcccCCCcCCCCCcEEEEEeeECCCCCeEEeCCCCCCCcHHHHHHhChhhhCchhh
Confidence 689999999999999999999999986432 4568899999999999999999987665678999999999999999999
Q ss_pred hhhcCCCcchhhcccCCCCCccccCCCHHHHHHhhccCCCCCCCCCCCceeEEEccCceecccCCchHHHHhhhhChHHH
Q psy12637 80 SQFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKLHREFPDIYKDENHKPELAIALSKFEALCGFKPLERIKKNIEETKEL 159 (270)
Q Consensus 80 ~~fg~~lP~L~KvLs~~~~LSIQvHPd~~~A~~~~~~~p~~Y~D~n~KpE~~~aLt~f~~l~Gfr~~~ei~~~l~~~~el 159 (270)
++||++|||||||||++++||||||||+++|+++|+++|+||||+||||||+||||+|++|||||+.+||.++|++.|+|
T Consensus 82 ~~~~~~lP~L~KvL~a~~~LSIQvHPd~~~A~~~~~~~P~~Y~D~nHKPEm~iALt~F~al~GFRp~~ei~~~l~~~p~l 161 (394)
T PLN02288 82 ERWGGDLPFLFKVLSVAKALSIQAHPDKKLAEKLHAEQPNVYKDDNHKPEMALALTEFEALCGFVTIQELKAVLRTVPEL 161 (394)
T ss_pred hhccccCceEEEEeecCCCCceeeCCCHHHHHHhcccCccccCCCCCCceeEEEcChHHHhcCCCCHHHHHHHHHhChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHhcC-------CHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc------------------------
Q psy12637 160 QAVIGESLVKSMVSCM-------NIEVFKEIFHAIMSAPQAQVEKQLCLLNETIHR------------------------ 208 (270)
Q Consensus 160 ~~~i~~~~~~~~~~~~-------~~~~l~~~f~~lm~~~~~~~~~~~~~l~~rl~~------------------------ 208 (270)
+++++.....++.... ..++|+++|+.+|+++.+.+.++++.|++++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~f~~lm~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~yP~D 241 (394)
T PLN02288 162 RELVGSEAADQLLALPEHDGEEDVKSVLRSAFTALMTASKDVVTEAVSKLKARLHAESQARELTDKEELVLRLEKQYPGD 241 (394)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHCCCC
Confidence 9999987666565443 258899999999999999999998888876641
Q ss_pred -----------------------------------------------CC----cccHHHHhhhcccccCCCCccccccee
Q psy12637 209 -----------------------------------------------TG----YSVIATLCSLLNYKFGPPEAKLLIPVI 237 (270)
Q Consensus 209 -----------------------------------------------aG----~iDv~~L~~~l~~~~~~~~~~~~~p~~ 237 (270)
|| |+||++||+||+|++.+++++.+.+..
T Consensus 242 ~G~~~~llLN~v~L~PGeaifl~ag~~HAYl~G~~vE~MA~SDNVlRaGLTpK~~Dv~~L~~~l~f~~~~~~~~~~~~~~ 321 (394)
T PLN02288 242 VGVLSAFFLNYVKLNPGEALYLGANEPHAYLSGECIECMATSDNVVRAGLTPKFRDVQTLCSMLTYKQGFPEILTGVPVD 321 (394)
T ss_pred CeeEhhhhhceEecCCCCEEEecCCCCceecCCCeEEeeecCCceeeecCCCccccHHHHHhhccCccCCcccccccccC
Confidence 55 999999999999999988877665543
Q ss_pred cCCCeEEecCCCCCeeEEEEEecCCCC
Q psy12637 238 KDESCRFYLPPVADFGVAKIQVSSYHS 264 (270)
Q Consensus 238 ~~~~~~~y~~p~~eF~l~~~~l~~g~~ 264 (270)
.++..|.||++||+|.++++++|+.
T Consensus 322 --~~~~~y~~P~~eF~v~~~~l~~~~~ 346 (394)
T PLN02288 322 --PYTTRYLPPFDEFEVDHCDVPPGAS 346 (394)
T ss_pred --CCceEECCCCcceEEEEEEeCCCCe
Confidence 2467899999999999999987754
No 3
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=3.2e-63 Score=471.63 Aligned_cols=249 Identities=29% Similarity=0.485 Sum_probs=214.9
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCCCCCCCCCceeeeeeecCCCCeEEccCCCCCccHHHHHHhCCC-cCCchhH
Q psy12637 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPH-CLGTDVI 79 (270)
Q Consensus 1 ~~L~~~~~~y~WG~~g~~s~i~~l~~~~~~~~~~~~p~aE~W~g~hp~~pS~v~~~~~~~~~L~~~i~~~p~-~LG~~~~ 79 (270)
|+|+|.+|+|+||+ .|.|++++|...+ +++||||+|||+||++||.|.+++..+++|+++|+++|+ +||+.+.
T Consensus 2 ~~l~~~~q~y~WG~---~s~l~~l~g~~~~---~~~p~aE~W~gaHp~~pS~v~~~~~~~~~L~~~i~~~~~~~LG~~~~ 75 (389)
T PRK15131 2 QKMINSVQNYAWGS---KTALTELYGIANP---DNQPMAELWMGAHPKSSSRVQDANGDIVSLRDVIESDKSALLGEAVA 75 (389)
T ss_pred eeeeccccccCCCC---HHHHHHHhCCCCC---CCCceeEEEEEECCCCCeEEeCCCCCCCcHHHHHHhCHHHHcCcchh
Confidence 68999999999995 4789999987543 679999999999999999998755567899999999998 9999999
Q ss_pred hhhcCCCcchhhcccCCCCCccccCCCHHHHHHhhccCC----------CCCCCCCCCceeEEEccCceecccCCchHHH
Q psy12637 80 SQFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKLHREFP----------DIYKDENHKPELAIALSKFEALCGFKPLERI 149 (270)
Q Consensus 80 ~~fg~~lP~L~KvLs~~~~LSIQvHPd~~~A~~~~~~~p----------~~Y~D~n~KpE~~~aLt~f~~l~Gfr~~~ei 149 (270)
++|| +|||||||||++++|||||||||++|+++|.+++ |||||+|||||||||||+|++|||||+.++|
T Consensus 76 ~~f~-~lP~L~KiL~a~~~LSIQvHPd~~~A~~~f~~e~~~gip~~~~~r~Y~D~nhKpEm~~aLt~F~al~GfRp~~ei 154 (389)
T PRK15131 76 KRFG-ELPFLFKVLCAAQPLSIQVHPNKRAAEIGFAKENAAGIPLDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEI 154 (389)
T ss_pred hhcC-CCceEeeeeccCCCceeEeCCCHHHHHHHhhhcccccCccccchhccCCCCCCceEEEEcchhHHhcCCCcHHHH
Confidence 9998 7999999999999999999999999999997643 9999999999999999999999999999999
Q ss_pred HhhhhChHHHHHHHhhhhHHHHHhcCCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc---------------------
Q psy12637 150 KKNIEETKELQAVIGESLVKSMVSCMNIEVFKEIFHAIMSAPQAQVEKQLCLLNETIHR--------------------- 208 (270)
Q Consensus 150 ~~~l~~~~el~~~i~~~~~~~~~~~~~~~~l~~~f~~lm~~~~~~~~~~~~~l~~rl~~--------------------- 208 (270)
.++|+..+++..++.. +....++++|+.+|.++|+++.++++.+++.+.+++.+
T Consensus 155 ~~~l~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~p~D~G 229 (389)
T PRK15131 155 VSLLQPVAGAHPAIAH-----FLQQPDAERLSELFASLLNMQGEEKSRALAVLKSALNSQQGEPWQTIRLISEFYPDDSG 229 (389)
T ss_pred HHHHHhcchhhHHHHH-----HhcCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHCCCCch
Confidence 9999998887775543 32333578999999999999999988777766665540
Q ss_pred ---------------------------------------------CC----cccHHHHhhhcccccCCCCcccccceecC
Q psy12637 209 ---------------------------------------------TG----YSVIATLCSLLNYKFGPPEAKLLIPVIKD 239 (270)
Q Consensus 209 ---------------------------------------------aG----~iDv~~L~~~l~~~~~~~~~~~~~p~~~~ 239 (270)
+| |+||++|++|++|++.++..+.+.+.. .
T Consensus 230 ~~~~llLN~v~l~pGeaifipAg~~HAyl~G~~iEima~SDnv~RaGlT~K~idv~~ll~~l~f~~~~~~~~~~~~~~-~ 308 (389)
T PRK15131 230 LFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFEAKPANQLLTQPVK-Q 308 (389)
T ss_pred heehhheeEEEeCCCCEEEeCCCCCeEEcCCeEEEEEecCCcEEecCCCCCcccHHHHHhhcCCCCCCchhccccccc-c
Confidence 44 899999999999999988765555533 2
Q ss_pred CCeEEecCCCCCeeEEEEEecCC
Q psy12637 240 ESCRFYLPPVADFGVAKIQVSSY 262 (270)
Q Consensus 240 ~~~~~y~~p~~eF~l~~~~l~~g 262 (270)
+.+.+|.+|++||+|.++++..+
T Consensus 309 ~~~~~~~~p~~~F~~~~~~l~~~ 331 (389)
T PRK15131 309 GAELDFPIPVDDFAFSLHDLSDQ 331 (389)
T ss_pred CCeEEECCCCCCcEEEEEEECCc
Confidence 35778999999999999998653
No 4
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=100.00 E-value=1.2e-61 Score=459.41 Aligned_cols=261 Identities=41% Similarity=0.690 Sum_probs=200.3
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCCCCCCCCCceeeeeeecCCCCeEEccCCCCCccHHHHHHhCCCcCCchhHh
Q psy12637 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVIS 80 (270)
Q Consensus 1 ~~L~~~~~~y~WG~~g~~s~i~~l~~~~~~~~~~~~p~aE~W~g~hp~~pS~v~~~~~~~~~L~~~i~~~p~~LG~~~~~ 80 (270)
|||+|.+|+|+||+.|+.+.|+++++...+.+++++||||+|||+||++||.|.++++.+.+|.++++. +|+....
T Consensus 2 ~~l~~~~~~y~WG~~Gs~~~l~~l~~~~~~~~~~~~p~aE~W~g~hp~~ps~v~~~~l~~~~~~~~~~~----~~~~~~~ 77 (373)
T PF01238_consen 2 FKLKPAVQNYIWGKKGSNSRLARLLGKPDPSIDEDKPYAELWMGAHPNGPSVVANGGLQGKILSDPIAE----LGEKFGE 77 (373)
T ss_dssp EEEEEEEEE-TTBEECCCSHHHHHHHHH-TT--TTSCEEEEEES--TTS-EEEECTTHHHHHHHHHHHH----HHHHHHH
T ss_pred eeeecCcccCccCCCCcccHHHHHhcCCCCccccCCccCCEEEEECCCCceEeecCccccchhhhhHhh----hhHHhhh
Confidence 689999999999988899999999998766455689999999999999999998865344455555554 5555557
Q ss_pred hhcCCCcchhhcccCCCCCccccCCCHHHHHHhhccCCCCCCCCCCCceeEEEccCceecccCCchHHHHhhhhChHHHH
Q psy12637 81 QFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKLHREFPDIYKDENHKPELAIALSKFEALCGFKPLERIKKNIEETKELQ 160 (270)
Q Consensus 81 ~fg~~lP~L~KvLs~~~~LSIQvHPd~~~A~~~~~~~p~~Y~D~n~KpE~~~aLt~f~~l~Gfr~~~ei~~~l~~~~el~ 160 (270)
+||.+|||||||||++++||||||||+++|+++|...||+|+|+||||||+||||+|+++||||+.+||+++|++.++++
T Consensus 78 ~~~~~lP~L~KvL~~~~~LSiQvHPd~~~A~~l~~~~p~~Y~D~NhKPEm~iALT~F~al~GFRp~~eI~~~l~~~~el~ 157 (373)
T PF01238_consen 78 RFGDRLPFLFKVLDAAKPLSIQVHPDKEQAEKLHDADPRNYKDDNHKPEMAIALTPFEALCGFRPLEEIAEFLKDAPELA 157 (373)
T ss_dssp HTTSS-SEEEEEEEESS---EEE---HHHHHHCTCCTTCCCHCSCTTTEEEEESS-EEEEEEE--HHHHHHHCCCCHHHH
T ss_pred ccccccchhhhhhccCCCcccccCCCHHHHhhhhhcCcccccchhcCCceEEeccchhhcccccchhhhhhhcccChhHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHH---HhcCC---H------HHHHHHHHHHhcCCchhHHHHHHHHHHHHhc--------------------
Q psy12637 161 AVIGESLVKSM---VSCMN---I------EVFKEIFHAIMSAPQAQVEKQLCLLNETIHR-------------------- 208 (270)
Q Consensus 161 ~~i~~~~~~~~---~~~~~---~------~~l~~~f~~lm~~~~~~~~~~~~~l~~rl~~-------------------- 208 (270)
.+++.....++ .+... . ..++.+|+.+|.++...+..++..|+++++.
T Consensus 158 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~d~~~~~~~l~~~ 237 (373)
T PF01238_consen 158 ELLGGEEAESLEELLSAIEEGDPDELLERPVLKGDFSALMPAGTEHAIEALAALVERQQNSDSTYRSYDLARLILRLNEQ 237 (373)
T ss_dssp HHHCCCHHCCHHHHHHHHCTTSHHHHHCCCHHHHHHHHHHTTTHHHHHHHHHHHHHHHCC-HCCCHCC-HHHHHHHHHCC
T ss_pred HHhhhhhhhhHHHHhhhhhccChhhhhhHHHhhhhhhhccccchHHHHHHHHHHHHhhhcccccccccccchhhhhhhhh
Confidence 99987654322 22211 1 3589999999999999888887777665442
Q ss_pred --------------------------------------------------CC----cccHHHHhhhcccccCCCCccccc
Q psy12637 209 --------------------------------------------------TG----YSVIATLCSLLNYKFGPPEAKLLI 234 (270)
Q Consensus 209 --------------------------------------------------aG----~iDv~~L~~~l~~~~~~~~~~~~~ 234 (270)
|| |+|+++|++||+|++.++....+.
T Consensus 238 yP~D~G~~~llLN~v~L~pGeaifl~a~~~HAYl~G~~vE~MA~SDNVlRaGLTpK~iDv~~L~~~l~y~~~~~~~~~~~ 317 (373)
T PF01238_consen 238 YPGDVGIFALLLNYVELQPGEAIFLPAGEPHAYLSGDCVECMANSDNVLRAGLTPKHIDVPELLEMLTYKPKPPEPAILP 317 (373)
T ss_dssp STTTTCHCHCCEEEEEE-TT-EEEEHTTHHEEEEEEEEEEEEESSEEEEECCSCSSEEEHHHHHHC-EEEEEEGGGCCE-
T ss_pred ccccCCcEEEEEEEEEecCCceEEecCCCccccccccceeccccccceeccCCccceeEHhHheeeeEeeccCCcceeec
Confidence 56 899999999999977766554444
Q ss_pred cee-cCCCeEEecCCCCCeeEEEEEecCCCCC
Q psy12637 235 PVI-KDESCRFYLPPVADFGVAKIQVSSYHSP 265 (270)
Q Consensus 235 p~~-~~~~~~~y~~p~~eF~l~~~~l~~g~~~ 265 (270)
+.. ....+++|.||++||+|.+++++.|+..
T Consensus 318 ~~~~~~~~~~~y~pp~~eF~l~~~~l~~g~~~ 349 (373)
T PF01238_consen 318 PDAPYDSGSVLYGPPVDEFALSRIDLKKGESF 349 (373)
T ss_dssp -ECCEEECEEEEEESSSSEEEEEEECCTTEEE
T ss_pred CccccCCceEEECCCCCeEEEEEEEECCCCeE
Confidence 443 1235778999999999999999988753
No 5
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-43 Score=322.86 Aligned_cols=230 Identities=27% Similarity=0.388 Sum_probs=179.5
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCCCCCCCCCceeeeeeecCCCCeEEccCCCCCccHHHHHHhCCCcCCchhHh
Q psy12637 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVIS 80 (270)
Q Consensus 1 ~~L~~~~~~y~WG~~g~~s~i~~l~~~~~~~~~~~~p~aE~W~g~hp~~pS~v~~~~~~~~~L~~~i~~~p~~LG~~~~~ 80 (270)
++|+|.+|+|+||+ +++++++|.. + +++|+||+||||||++||.|.++.+.+.+|++++++++++||+...
T Consensus 4 ~~l~~~l~~~~WGg----~~L~~lfg~~-~---~~~~~gE~W~~AHp~~~S~v~~~~~~~~~L~el~~~~~ellG~~~~- 74 (312)
T COG1482 4 LFLTPVLQEYIWGG----TALADLFGYD-P---PSEPIGELWAGAHPNGPSTVANGPGQGKSLSELIADPRELLGNKSF- 74 (312)
T ss_pred eecchhheeechhH----HHHHHHhCCC-C---CCCceEeEEEEecCCCCeeEEecCcCCcCHHHHHhCcHhhcCCcch-
Confidence 57999999999994 5789999875 2 6889999999999999999999887899999999944469999864
Q ss_pred hhcCCCcchhhcccCCCCCccccCCCHHHHHHhhcc-----CCCCCCCCCCCceeEEEccCceecccCCchHHHHhhhhC
Q psy12637 81 QFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKLHRE-----FPDIYKDENHKPELAIALSKFEALCGFKPLERIKKNIEE 155 (270)
Q Consensus 81 ~fg~~lP~L~KvLs~~~~LSIQvHPd~~~A~~~~~~-----~p~~Y~D~n~KpE~~~aLt~f~~l~Gfr~~~ei~~~l~~ 155 (270)
.+||||+|||||+++|||||||||++|+++++. +.|+|+|+||||||+|++++.. -+ ..
T Consensus 75 ---~~FplL~KiLdA~~~LSiQVHP~d~~A~~~~~g~~gkte~w~y~D~~~k~Eli~g~~~~~----~~---------~~ 138 (312)
T COG1482 75 ---DRFPLLFKILDANDPLSIQVHPSDEYAEEGEEGILGKTECWYYKDANHKPELIYGLTPAK----SK---------PA 138 (312)
T ss_pred ---hhccceeeeeccCCcceEEECCCHHHHhhcccCccCCCcceeecCCCCCceEEEEEchhh----cc---------hh
Confidence 457799999999999999999999999887543 4599999999999999999811 01 12
Q ss_pred hHHHHHHHh-hhhHH-HHHhcCC----------HHHHHHHHHHHhcCCchhHHHHHHHHHHHHhcCC-cccHHHHhhhcc
Q psy12637 156 TKELQAVIG-ESLVK-SMVSCMN----------IEVFKEIFHAIMSAPQAQVEKQLCLLNETIHRTG-YSVIATLCSLLN 222 (270)
Q Consensus 156 ~~el~~~i~-~~~~~-~~~~~~~----------~~~l~~~f~~lm~~~~~~~~~~~~~l~~rl~~aG-~iDv~~L~~~l~ 222 (270)
.++|++.+. .+.++ .+++++. ++++|+...+ +.++..+.++.+ .|+.+.. ++|+.+|.+++.
T Consensus 139 ~e~l~~~i~~~~~~d~~lLn~v~lkpGe~~fl~Agt~HA~~~G-~~lEvmqnSDnt----yR~yd~~r~~d~~~lr~l~~ 213 (312)
T COG1482 139 IEELKEMIDRGGLFDPLLLNRVKLKPGEAFFLPAGTPHAYLKG-LVLEVMQNSDNT----YRVYDTDRYDDIGELRELHL 213 (312)
T ss_pred HHHHHHhhhhccccchhhhcEEecCCCCEEEecCCCceeeccc-eEEEEEecCccE----EEcccccccccchhHHhhhh
Confidence 477777777 65566 6777662 4666666665 444443333322 2222222 999999999999
Q ss_pred cccCCCCcccccceecCCCeEEecCCCCCeeEEEEEecC
Q psy12637 223 YKFGPPEAKLLIPVIKDESCRFYLPPVADFGVAKIQVSS 261 (270)
Q Consensus 223 ~~~~~~~~~~~~p~~~~~~~~~y~~p~~eF~l~~~~l~~ 261 (270)
|++.+...+...+.. ++....|.+|+++|+|.++.+..
T Consensus 214 ~k~~~~~~~~~~~~~-~~~~~~~~v~~~~F~l~~~~i~~ 251 (312)
T COG1482 214 FKAKDVITLPTQPRK-QGAELTYPVPNEDFALYKWDISG 251 (312)
T ss_pred ccccchhhcCCcccc-cCceEEEeccccceEEEEEeccC
Confidence 999888776655444 33678999999999999999974
No 6
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=100.00 E-value=6.9e-40 Score=302.85 Aligned_cols=229 Identities=23% Similarity=0.305 Sum_probs=181.2
Q ss_pred CeeeccccccccCCCCCChHHHHHHHhhCCCCCCCCCceeeeee-ecCCCCeEEccCCCCCccHHHHHHhCCCcCCchhH
Q psy12637 1 MELSFSIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLG-THPSGPSSILSQCSRSENLESWIKNNPHCLGTDVI 79 (270)
Q Consensus 1 ~~L~~~~~~y~WG~~g~~s~i~~l~~~~~~~~~~~~p~aE~W~g-~hp~~pS~v~~~~~~~~~L~~~i~~~p~~LG~~~~ 79 (270)
++|+|.+++|+||| +.|++++|... +.+++||+||| +||+++|+|.+|...+.+|.++|+++|++||+...
T Consensus 2 ~~~~p~~~~~~WGG----~~l~~~~g~~~----~~~~~aE~W~~s~hp~~~S~v~~g~~~g~~L~~~i~~~~~llG~~~~ 73 (302)
T TIGR00218 2 LFIFPVFKERDWGG----TALADLFGYSI----PSQQTGECWAGSAHPKGPSTVLNGPYKGVSLIDLWEKHRELLGRADG 73 (302)
T ss_pred ccccccccccCccH----HHHHHHhCCCC----CCCCccceEEEEecCCCceEEecCCcCCCCHHHHHHhCHHhhCCccc
Confidence 47899999999996 57999988653 34689999996 99999999988766789999999999999998763
Q ss_pred hhhcCCCcchhhcccCCCCCccccCCCHHHHHHhhccCCCCCCCCCCCceeEEEcc---CceecccCCchHHHHhhhhCh
Q psy12637 80 SQFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKLHREFPDIYKDENHKPELAIALS---KFEALCGFKPLERIKKNIEET 156 (270)
Q Consensus 80 ~~fg~~lP~L~KvLs~~~~LSIQvHPd~~~A~~~~~~~p~~Y~D~n~KpE~~~aLt---~f~~l~Gfr~~~ei~~~l~~~ 156 (270)
+ +||||+||||++++|||||||||++|++.+.. +.||.||||+++ ...+++|++.. +.
T Consensus 74 ~----~~P~L~KiLda~~~LSIQVHPdD~~a~~~~~~-------~~gk~e~w~i~~~~~~~~~~~g~~~~--------~~ 134 (302)
T TIGR00218 74 D----RFPFLFKVLDAAKPLSIQVHPDDDYAELHEEG-------ELGKTECWYIIDCDEAAEIIKGHLKN--------SK 134 (302)
T ss_pred c----cCceEEEEecCCCCceeEECCChHHHHhcccc-------ccccEEEEEeecCCccHHhhhcchhc--------Ch
Confidence 3 59999999999999999999999999887632 479999999997 35788997753 45
Q ss_pred HHHHHHHhhhhHHHHHhcCC----------HHHHHHHHHHHhcCCchhHHHHHHHHHHHHhcCC-cccHHHHhhhccccc
Q psy12637 157 KELQAVIGESLVKSMVSCMN----------IEVFKEIFHAIMSAPQAQVEKQLCLLNETIHRTG-YSVIATLCSLLNYKF 225 (270)
Q Consensus 157 ~el~~~i~~~~~~~~~~~~~----------~~~l~~~f~~lm~~~~~~~~~~~~~l~~rl~~aG-~iDv~~L~~~l~~~~ 225 (270)
+++.+++.++.+..+++.+. ++++|+ +...+.++-.+.++.+ -|+.+.+ ++|++++++|++|++
T Consensus 135 ~~~~~~i~~g~~~~~ln~v~v~~Gd~i~ipaGt~HA-~~g~~~~Eiq~~SD~t----~R~~d~~r~l~ve~~l~~~~~~~ 209 (302)
T TIGR00218 135 EELWTMIEDGLFKLLLNRIKLKPGDFFYVPSGTPHA-YKGGLVLEVMQNSDNV----YRAGDTDKYLDIEKLVEVLTFPH 209 (302)
T ss_pred HHHHHHHhcCcHHHHhcccccCCCCEEEeCCCCccc-ccCceEEEEEcCCCcE----EEeeccCcccCHHHHHhhccCCC
Confidence 67888888888888887662 467777 5666655544433322 3444344 999999999999998
Q ss_pred CCCCcccccceecCCCeEEecCCCCCeeEEEEEecCC
Q psy12637 226 GPPEAKLLIPVIKDESCRFYLPPVADFGVAKIQVSSY 262 (270)
Q Consensus 226 ~~~~~~~~~p~~~~~~~~~y~~p~~eF~l~~~~l~~g 262 (270)
.++......+... +....|.+|+++|+|.++++.++
T Consensus 210 ~~~~~~~~~~~~~-~~~~~~~~~~~~F~~~~~~~~~~ 245 (302)
T TIGR00218 210 VPEFHLKGQPQKF-GAEILFMVPTEYFSVYKWDISGK 245 (302)
T ss_pred CCccccccccccC-CcEEEEcCCCCCeEEEEEEeCCc
Confidence 8776554444332 24668999999999999999654
No 7
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=50.75 E-value=35 Score=25.83 Aligned_cols=54 Identities=13% Similarity=0.291 Sum_probs=33.6
Q ss_pred ceecccCCchHHHHhhhhCh-HHHHHHHhhhhHHHHHhcC-CHHHHHHHHHHHhcCCchhHHHHH
Q psy12637 137 FEALCGFKPLERIKKNIEET-KELQAVIGESLVKSMVSCM-NIEVFKEIFHAIMSAPQAQVEKQL 199 (270)
Q Consensus 137 f~~l~Gfr~~~ei~~~l~~~-~el~~~i~~~~~~~~~~~~-~~~~l~~~f~~lm~~~~~~~~~~~ 199 (270)
.-.+||.+...+|.++.++. +.+++.++-. +.+ +.++++.+|..+ +.+...++.
T Consensus 30 ~a~l~G~~~~~~i~~~~~~~~~~l~~~l~~~------~~~PS~~Ti~rvl~~l---d~~~l~~~~ 85 (90)
T PF13808_consen 30 CAVLCGADSWREIAEWARAHEEWLRKRLGLP------RGVPSHDTIRRVLSRL---DPEALEEAF 85 (90)
T ss_pred HHHHHccccHHHHHHHHHHhHHHHHHhcCCC------CCCCcHHHHHHHHHHC---CHHHHHHHH
Confidence 34689999999999998874 5666666531 112 236666666643 444444443
No 8
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=46.88 E-value=17 Score=32.51 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=48.7
Q ss_pred CeEEccCCCCCccHHHHHHhCCC--cCCchhHhhhcCCCcchhhcccC--CCCC-ccccCCCHHHHHHhhccCC------
Q psy12637 50 PSSILSQCSRSENLESWIKNNPH--CLGTDVISQFGEKLPFLLKVLSV--DKAL-SIQMHPSKEQAVKLHREFP------ 118 (270)
Q Consensus 50 pS~v~~~~~~~~~L~~~i~~~p~--~LG~~~~~~fg~~lP~L~KvLs~--~~~L-SIQvHPd~~~A~~~~~~~p------ 118 (270)
|-.++-|-..|.-|.++-++||+ +||-++ ..|.+.|+|+- +..| -|-+...|+.-.--+--..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi------~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEI------RVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEE------ehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 55666554468889999999998 899875 57888888875 3344 5566666554321111111
Q ss_pred -CCCCCCCCCc
Q psy12637 119 -DIYKDENHKP 128 (270)
Q Consensus 119 -~~Y~D~n~Kp 128 (270)
=+|+||++|-
T Consensus 124 ~i~FPDPWpKk 134 (227)
T COG0220 124 YINFPDPWPKK 134 (227)
T ss_pred EEECCCCCCCc
Confidence 2899999986
No 9
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=41.98 E-value=9.2 Score=30.22 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.2
Q ss_pred CCCceeEEEcc-CceecccCCchH
Q psy12637 125 NHKPELAIALS-KFEALCGFKPLE 147 (270)
Q Consensus 125 n~KpE~~~aLt-~f~~l~Gfr~~~ 147 (270)
.+|.|+++|++ +|..+.|.|+-+
T Consensus 12 ~~KvEIa~AI~kpFPfl~gLrD~~ 35 (103)
T PF03172_consen 12 ENKVEIAYAITKPFPFLEGLRDHS 35 (103)
T ss_pred HhHHHHHHHHcccchHHHHhhhcc
Confidence 37999999998 799999999853
No 10
>KOG0721|consensus
Probab=33.82 E-value=9.5 Score=34.17 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=11.6
Q ss_pred CCCCCccccCCCHH
Q psy12637 95 VDKALSIQMHPSKE 108 (270)
Q Consensus 95 ~~~~LSIQvHPd~~ 108 (270)
+=+.||||.||||+
T Consensus 119 aYR~LSik~HPDK~ 132 (230)
T KOG0721|consen 119 AYRRLSIKYHPDKQ 132 (230)
T ss_pred HHHHhhhhhCCCcC
Confidence 44679999999994
No 11
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=28.95 E-value=1.5e+02 Score=25.18 Aligned_cols=39 Identities=18% Similarity=0.409 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhcCCcccHHHHhhh
Q psy12637 175 MNIEVFKEIFHAIMSAPQAQVEKQLCLLNETIHRTGYSVIATLCSL 220 (270)
Q Consensus 175 ~~~~~l~~~f~~lm~~~~~~~~~~~~~l~~rl~~aG~iDv~~L~~~ 220 (270)
+.+...+.++.+++..+. +..++.+|.+.| +|++.+++.
T Consensus 140 l~S~ef~~~~~~~~~~~~------~~~~~~~L~~~G-vdv~~l~~~ 178 (179)
T PF06757_consen 140 LRSPEFQQLYNALWASPE------FQRLLNELRENG-VDVDYLLEL 178 (179)
T ss_pred HcCHHHHHHHHHHHcCHH------HHHHHHHHHHcC-CCHHHHHHh
Confidence 344556677777665432 334445555555 777777764
No 12
>PTZ00120 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=25.45 E-value=31 Score=29.25 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=27.4
Q ss_pred CCCCCCCCCc----------eeEEEccCceecccCCchHHHHhhhhChHHHHHHHhhhh
Q psy12637 119 DIYKDENHKP----------ELAIALSKFEALCGFKPLERIKKNIEETKELQAVIGESL 167 (270)
Q Consensus 119 ~~Y~D~n~Kp----------E~~~aLt~f~~l~Gfr~~~ei~~~l~~~~el~~~i~~~~ 167 (270)
|+|.|++||. |+ .+++.|+++ +.+.. ++|.|........
T Consensus 53 RiF~de~gk~~n~Sv~d~~gei-L~VSQFTL~-~~~KG--------~RPsF~~aa~~~~ 101 (154)
T PTZ00120 53 RLWPDEGGKMWDRSVKDKDYEV-LVVSQFTLF-NVKKG--------NKPDFHLAMSPED 101 (154)
T ss_pred ecccCCCCCcccCCHhhcCCCE-EEEEccccc-cCCCC--------CCCCccccCCHHH
Confidence 7888999997 44 445779999 98764 5777766555433
No 13
>PF00851 Peptidase_C6: Helper component proteinase; InterPro: IPR001456 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain represents the potyvirus helper component protease found in genome polyproteins of potyviruses. It is is a cysteine peptidase belonging to the MEROPS peptidase family C6 (clan CA). The genome polyprotein contains: N-terminal peptidase belonging to MEROPS peptidase family S30 (protein P1), helper component protease, MEROPS peptidase family C6, (3.4.22 from EC) (HC-PRO), protein P3, 6KD protein (6K1), cytoplasmic inclusion protein (CI), 6KD protein 2 (6K2), genome-linked protein (VPG), nuclear inclusion protein A (3.4.22 from EC), nuclear inclusion protein B (2.7.7.48 from EC) and coat protein (CP). The helper component-proteinase is required for aphid transmission.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3RNV_A.
Probab=20.58 E-value=60 Score=32.21 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=15.8
Q ss_pred ccccCCCCCChHHHHHHHhhCCCCCCCCCceeeeeeecCCCCeEEccCCCC-Cc---cHHHHHHhCC-C--cCCchhHhh
Q psy12637 9 TYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSR-SE---NLESWIKNNP-H--CLGTDVISQ 81 (270)
Q Consensus 9 ~y~WG~~g~~s~i~~l~~~~~~~~~~~~p~aE~W~g~hp~~pS~v~~~~~~-~~---~L~~~i~~~p-~--~LG~~~~~~ 81 (270)
+..||.+|- .+.|++...=..++..+.|...|+=.||+|.-.+.-|.+- .. .+.+-++..+ + -++..+..+
T Consensus 201 nF~WG~Rgy--hakrFF~n~F~~i~p~~gY~~~~~R~~pnG~RkLAIg~Liv~~~l~~~r~~~~Ge~i~~~~it~~Cvs~ 278 (453)
T PF00851_consen 201 NFVWGERGY--HAKRFFSNYFEEIDPSDGYDKYVIRKNPNGSRKLAIGNLIVSTNLEKLREQMQGESIEREPITEACVSK 278 (453)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccchhH--HHHHHHHhhheeeCCCccccceeeecCCCccchhhhhhhccCCCHHHHHHHhCCCccccCCCchhheee
Confidence 779999874 4566665432256677789999999999988777553311 11 2222222222 1 245544443
Q ss_pred hcCC--CcchhhcccCCCCCcccc-CCCHHHHHHhhccCCCCCCCCCC-CceeEEEccC------ceecccCCchHHHHh
Q psy12637 82 FGEK--LPFLLKVLSVDKALSIQM-HPSKEQAVKLHREFPDIYKDENH-KPELAIALSK------FEALCGFKPLERIKK 151 (270)
Q Consensus 82 fg~~--lP~L~KvLs~~~~LSIQv-HPd~~~A~~~~~~~p~~Y~D~n~-KpE~~~aLt~------f~~l~Gfr~~~ei~~ 151 (270)
..+. .|-=..-++-++|+--.+ =|+|..-.-+-..+|..-.=|.. ..-||||-+. |-+|+++-+.+
T Consensus 279 ~~g~~vy~CcCVT~ddG~p~~S~~~~PTk~hlviGnsgD~k~idlP~~~~~~~yiak~GyCY~niFlaml~~v~e~---- 354 (453)
T PF00851_consen 279 RNGNFVYPCCCVTLDDGTPLYSELKMPTKNHLVIGNSGDPKYIDLPTTESGKMYIAKEGYCYINIFLAMLVNVNEE---- 354 (453)
T ss_dssp ---------------------------------------------------------TT-TTHHHHHHHGGGS-GG----
T ss_pred eCCcEEEEeeeEEcCCCcEeEeeeecCCCCeEEecCCCCcceeeCCCCCCCcEEeecCCchHHHHHHHHHccCChh----
Confidence 3333 455555577788888777 57776655554444432222222 3337777764 56888888763
Q ss_pred hhhChHHHHHHHhhhhH
Q psy12637 152 NIEETKELQAVIGESLV 168 (270)
Q Consensus 152 ~l~~~~el~~~i~~~~~ 168 (270)
....|.+++.+..+
T Consensus 355 ---~ak~ftk~vrD~~~ 368 (453)
T PF00851_consen 355 ---EAKDFTKMVRDQLV 368 (453)
T ss_dssp ---GHHHHHHHHHHTHH
T ss_pred ---HHHHHHHHHHHHHH
Confidence 44556655654433
Done!