RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12637
(270 letters)
>gnl|CDD|215162 PLN02288, PLN02288, mannose-6-phosphate isomerase.
Length = 394
Score = 229 bits (585), Expect = 2e-73
Identities = 92/207 (44%), Positives = 131/207 (63%), Gaps = 10/207 (4%)
Query: 2 ELSFSIQTYEWGKIGLDSKVAQLVEAAGGT-VDKDKNYAELWLGTHPSGPSSILSQCSRS 60
L ++Q Y+WG+IG +S+VA+L A G+ VD DK YAELW+GTHPSGPS +++ S
Sbjct: 3 RLRCAVQNYDWGRIGSESEVARLAAANSGSDVDPDKPYAELWMGTHPSGPSFVVATGKGS 62
Query: 61 ENLESWIKNNPHCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKLHREFPDI 120
L+ WI NP LG V+ ++G LPFL KVLSV KALSIQ HP K+ A KLH E P++
Sbjct: 63 VLLKEWIAENPAALGDRVVERWGGDLPFLFKVLSVAKALSIQAHPDKKLAEKLHAEQPNV 122
Query: 121 YKDENHKPELAIALSKFEALCGFKPLERIKKNIEETKELQAVIGESLVKSMVSCMNIE-- 178
YKD+NHKPE+A+AL++FEALCGF ++ +K + EL+ ++G + +
Sbjct: 123 YKDDNHKPEMALALTEFEALCGFVTIQELKAVLRTVPELRELVGSEAADQ-LLALPEHDG 181
Query: 179 ------VFKEIFHAIMSAPQAQVEKQL 199
V + F A+M+A + V + +
Sbjct: 182 EEDVKSVLRSAFTALMTASKDVVTEAV 208
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 214 IATLCSLLNYKFGPPEAKLLIPVIKDESCRFYLPPVADFGVAKIQVSS 261
+ TLCS+L YK G PE +L V D YLPP +F V V
Sbjct: 298 VQTLCSMLTYKQGFPE--ILTGVPVDPYTTRYLPPFDEFEVDHCDVPP 343
>gnl|CDD|216382 pfam01238, PMI_typeI, Phosphomannose isomerase type I. This is a
family of Phosphomannose isomerase type I enzymes (EC
5.3.1.8).
Length = 373
Score = 176 bits (447), Expect = 4e-53
Identities = 93/237 (39%), Positives = 128/237 (54%), Gaps = 19/237 (8%)
Query: 3 LSFSIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSEN 62
L +Q Y WGKIG +S +A+L + ++D+DK YAELW+GTHP GPS +L+ R
Sbjct: 4 LQCGVQNYAWGKIGSNSALAKLFAYSIPSIDEDKPYAELWMGTHPKGPSKVLNGQLRDVT 63
Query: 63 LESWIKNNPHCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKLHREFPDIYK 122
L LG +FG LPFL KVLSV+K LSIQ+HP KE LH P Y
Sbjct: 64 LSELSAE----LGELFGKRFGGNLPFLFKVLSVEKPLSIQVHPDKELGEILHAADPKNYP 119
Query: 123 DENHKPELAIALSKFEALCGFKPLERIKKNIEETKELQAVIGESLVKSMVSCM------- 175
D+NHKPELAIAL+ FE LCGF+PL I + +++ EL +IG +S +
Sbjct: 120 DDNHKPELAIALTPFEGLCGFRPLSEIVEFLKDVPELAEIIGGETARSFEELVQLIASGD 179
Query: 176 -----NIEVFKEIFHAIMSAPQAQVEKQLCLLNETI--HRTGYSVIATLCSLLNYKF 225
NI+V + F ++M++ ++ Q LL E Y+V L L++
Sbjct: 180 PDALLNIKVLQGDFSSLMNSGTEHIKIQGALLLERQQSSPATYNVYD-LPELIDRLN 235
Score = 32.1 bits (73), Expect = 0.27
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 211 YSVIATLCSLLNYKFGPPEAKLLIPVI-KDESCRFYLPPVADFGVAK 256
+ + L +L YK+ P + + L + Y PP+ +F V +
Sbjct: 294 FIDVPELVEMLTYKYDPSDEQKLQQTEPYLDGSVLYDPPIDEFAVLQ 340
>gnl|CDD|224399 COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and
metabolism].
Length = 312
Score = 113 bits (284), Expect = 1e-29
Identities = 72/279 (25%), Positives = 99/279 (35%), Gaps = 61/279 (21%)
Query: 6 SIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLES 65
+Q Y WG + +A L G + ELW G HP+GPS++ + + ++L
Sbjct: 9 VLQEYIWGG----TALADLF----GYDPPSEPIGELWAGAHPNGPSTVANGPGQGKSLSE 60
Query: 66 WIKNNPHCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKLHREFPD-----I 120
I + LG +F P L K+L + LSIQ+HPS E A +
Sbjct: 61 LIADPRELLGNKSFDRF----PLLFKILDANDPLSIQVHPSDEYAEEGEEGILGKTECWY 116
Query: 121 YKDENHKPELAIALSKFEALCGFKPLERIKKNIEETKELQAVIGESLVKSMVSCMN---- 176
YKD NHKPEL L+ + K IEE KE G + +N
Sbjct: 117 YKDANHKPELIYGLTPAK----------SKPAIEELKE-MIDRGGLFDPLL---LNRVKL 162
Query: 177 -----IEVFKEIFHAIMSAPQAQVEKQLCLLNE------TIHRTG----YSVIATLCSLL 221
+ HA K L L E +R Y I L L
Sbjct: 163 KPGEAFFLPAGTPHAY--------LKGLVL--EVMQNSDNTYRVYDTDRYDDIGELRELH 212
Query: 222 NYKFGPPEAKLLIPVIKDESCRFYLPPVADFGVAKIQVS 260
+K L K + Y P DF + K +S
Sbjct: 213 LFKAKD-VITLPTQPRKQGAELTYPVPNEDFALYKWDIS 250
>gnl|CDD|185085 PRK15131, PRK15131, mannose-6-phosphate isomerase; Provisional.
Length = 389
Score = 108 bits (272), Expect = 2e-27
Identities = 58/155 (37%), Positives = 77/155 (49%), Gaps = 18/155 (11%)
Query: 6 SIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLES 65
S+Q Y WG SK A L E G ++ AELW+G HP S + +L
Sbjct: 7 SVQNYAWG-----SKTA-LTELYGIANPDNQPMAELWMGAHPKSSSRVQDANGDIVSLRD 60
Query: 66 WIKNNPHC-LGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSK---------EQAVKLHR 115
I+++ LG V +FGE LPFL KVL + LSIQ+HP+K E A +
Sbjct: 61 VIESDKSALLGEAVAKRFGE-LPFLFKVLCAAQPLSIQVHPNKRAAEIGFAKENAAGIPL 119
Query: 116 EFPD-IYKDENHKPELAIALSKFEALCGFKPLERI 149
+ + YKD NHKPEL AL+ F A+ F+ I
Sbjct: 120 DAAERNYKDPNHKPELVFALTPFLAMNAFREFSEI 154
>gnl|CDD|232879 TIGR00218, manA, mannose-6-phosphate isomerase, class I. The names
phosphomannose isomerase and mannose-6-phosphate
isomerase are synonomous. This family contains two
rather deeply branched groups. One group contains an
experimentally determined phosphomannose isomerase of
Streptococcus mutans as well as three uncharacterized
paralogous proteins of Bacillus subtilis, all at more
than 50 % identity to each other, plus a more distant
homolog from Archaeoglobus fulgidus. The other group
contains members from E. coli, budding yeast, Borrelia
burgdorferi, etc [Energy metabolism, Sugars].
Length = 303
Score = 69.4 bits (170), Expect = 9e-14
Identities = 63/266 (23%), Positives = 106/266 (39%), Gaps = 44/266 (16%)
Query: 7 IQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLG-THPSGPSSILSQCSRSENLES 65
+ +WG + +A L G + E W G HP GPS++L+ + +L
Sbjct: 11 LVERDWGG----TALADLF----GYSIPSQQTGECWAGSAHPKGPSTVLN--GKGVSLID 60
Query: 66 WIKNNPHCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKLHREFPDIYKDEN 125
+ + LG ++ PFL+KVL K LSIQ+HP D Y + +
Sbjct: 61 LWEKHRELLGRAD----EKRFPFLVKVLDAAKPLSIQVHPD------------DKYAEIH 104
Query: 126 HKPELAIALSKFEALCGFKPLERIKKNIEETK-ELQAVIGESLVKSMVSCMNIE------ 178
+ EL + CG K E IK++++ +K EL+ I + L K +++ + ++
Sbjct: 105 EEGELGKTECWYIIDCG-KAAEIIKEHLKNSKEELKTKIEDGLFKLLLNRIKLKPGDFFY 163
Query: 179 VFKEIFHAIMSAPQAQVEKQLCLLNETIHRTG----YSVIATLCSLLNYKFGPPEAKLLI 234
V HA +V + ++ ++R G Y I L +L + P
Sbjct: 164 VRSGTPHAYKGGLVLEVMQN----SDNVYRAGDTDKYLDIEKLVEVLTFPHVPEFHLKGQ 219
Query: 235 PVIKDESCRFYLPPVADFGVAKIQVS 260
F P +F V K +S
Sbjct: 220 KQKFGAEILFN-VPTENFSVYKWDIS 244
>gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].
Length = 427
Score = 29.5 bits (67), Expect = 1.8
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 17/119 (14%)
Query: 115 REFPDIYKDENHKPELAIALSKFEALCGFKPLERIKKNIEETKELQAVIGESL----VKS 170
E P I D H P A AL+ E +K + L V G L +
Sbjct: 298 SENPLILLDGAHNPHAARALA-----------ETLKTLFNDRPRLTLVFG-MLKDKDIAG 345
Query: 171 MVSCMNIEVFKEIFHAIMSAPQAQVEKQLCLLNETIHRTGYSVIATLCSLLNYKFGPPE 229
M++ + + + EI+ + P+A ++L +A L K +
Sbjct: 346 MLAAL-LPIVDEIYTTPLPWPRALDAEELLAFAGERGGVELDDVAEALELALEKADEDD 403
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.8 bits (64), Expect = 3.5
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 22/116 (18%)
Query: 109 QAVKLHREFPDIYKDENHKPELAIALSKFEALCG--FKPLER----------IKKNIEET 156
A +L + P+ D+N E+ S+ L FK L+ I++N+
Sbjct: 3400 DARELMKLTPETINDDN-LSEIKHLKSRKHLLLTETFKTLKAFGLQYRVKAGIEENLSNL 3458
Query: 157 KELQAVI----GESLVKSMVSCMNIEVFKEIFHAIMSAPQ-----AQVEKQLCLLN 203
+ L AVI S+ K S M F F + +V+K + L N
Sbjct: 3459 RNLLAVIPPVTSLSIEKVDRSLMKSLDFIPKFQTLAGHQHNDLSVPEVQKGVGLFN 3514
>gnl|CDD|223947 COG1015, DeoB, Phosphopentomutase [Carbohydrate transport and
metabolism].
Length = 397
Score = 28.0 bits (63), Expect = 6.0
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 50 PSSILSQCSRSENLESWIKNNPHCLGTDVISQFGE---KLPFLLKVLSVDKALSIQMH 104
P +L + R + I N H GT++I GE K + S D I H
Sbjct: 112 PEELLDEIERRTGRKG-ILGNKHASGTEIIKDLGEEHMKTGKPIVYTSADSVFQIAAH 168
>gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional.
Length = 254
Score = 27.7 bits (61), Expect = 6.1
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 146 LERIKKNIEETK-ELQAVIGESLVKSMVSCMNI-----------EVFKEIFHAIMSAPQA 193
++ +KK +E+ K ELQ +G S + +V+ I E+F EI + AP
Sbjct: 68 IDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFF 127
Query: 194 QVEKQLCLL 202
+++ L LL
Sbjct: 128 LIQQTLPLL 136
>gnl|CDD|218540 pfam05291, Bystin, Bystin. Trophinin and tastin form a cell
adhesion molecule complex that potentially mediates an
initial attachment of the blastocyst to uterine
epithelial cells at the time of implantation. Trophinin
and tastin bind to an intermediary cytoplasmic protein
called bystin. Bystin may be involved in implantation
and trophoblast invasion because bystin is found with
trophinin and tastin in the cells at human implantation
sites and also in the intermediate trophoblasts at
invasion front in the placenta from early pregnancy.
This family also includes the yeast protein ENP1. ENP1
is an essential protein in Saccharomyces cerevisiae and
is localised in the nucleus. It is thought that ENP1
plays a direct role in the early steps of rRNA
processing as enp1 defective yeast cannot synthesise 20S
pre-rRNA and hence 18S rRNA, which leads to reduced
formation of 40S ribosomal subunits.
Length = 303
Score = 27.6 bits (62), Expect = 6.5
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 146 LERIKKNIEETKELQAVIGESLVKSM 171
L R++++I E K+L + +L K++
Sbjct: 122 LPRVREDIRENKKLNVHLYNALKKAL 147
>gnl|CDD|224711 COG1798, DPH5, Diphthamide biosynthesis methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 260
Score = 27.3 bits (61), Expect = 9.0
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 204 ETIHR-TGYSVIATLCSLLNYKFGPP 228
IH + + L L NYKFG
Sbjct: 107 RVIHGASIINAAIGLTGLQNYKFGKT 132
>gnl|CDD|192589 pfam10444, Nbl1_Borealin_N, Nbl1 / Borealin N terminal. Nbl1 is a
subunit of the conserved CPC, the chromosomal passenger
complex, which regulates mitotic chromosome segregation.
In Fungi and Animalia, this complex consists of the
kinase Aurora B/AIR-2/Ipl1p, INCENP/ICP-1/Sli15p, and
Survivin/BIR-1/Bir1p. In Animalia, a fourth subunit
(Borealin/Dasra/CSC-1) is required for targeting CPC to
centromeres and central spindles. Nbl1 has been shown in
budding yeast to be essential for viability, and for CPC
localisation, stability, integrity, and function. The N
terminus of Borealin is homologous to Nbl1. This family
contains both Nbl1, and the N terminal region of
Borealin.
Length = 59
Score = 25.3 bits (56), Expect = 9.3
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 146 LERIKKNIEETKELQAVIGESLVKSMVSCMNIEVFKEIFHAIMSAPQAQVEKQLC 200
L+ +EE E E+L+KS+ + + IE I+ P+A + +L
Sbjct: 7 LQNFDLEVEERAERLRSHYENLLKSLRARLEIE--------ILRIPRAVRKMKLR 53
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,445,976
Number of extensions: 1252093
Number of successful extensions: 1072
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1061
Number of HSP's successfully gapped: 26
Length of query: 270
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 175
Effective length of database: 6,723,972
Effective search space: 1176695100
Effective search space used: 1176695100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)