RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12637
(270 letters)
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A
{Candida albicans} SCOP: b.82.1.3
Length = 440
Score = 169 bits (429), Expect = 4e-50
Identities = 86/221 (38%), Positives = 125/221 (56%), Gaps = 20/221 (9%)
Query: 6 SIQTYEWGKIGLDSKVAQLVEAA--GGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENL 63
Q Y+WGKIG S VAQ V + T+D+ K YAELW+GTHPS PS + +++ L
Sbjct: 11 GYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKAIDLNNQT--L 68
Query: 64 ESWIKNNP-HCLGTDVISQFGE--KLPFLLKVLSVDKALSIQMHPSKEQAVKLHREFPDI 120
+ P LG +I++FG +LPFL KVLS++K LSIQ HP K+ +LH P
Sbjct: 69 RDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQLHAADPKN 128
Query: 121 YKDENHKPELAIALSKFEALCGFKPLERIKKNIEETKELQAVIGESLVKSMVS------- 173
Y D+NHKPE+AIA++ FE CGFKPL+++ K + EL +IG+ LV +S
Sbjct: 129 YPDDNHKPEMAIAVTDFEGFCGFKPLDQLAKTLATVPELNEIIGQELVDEFISGIKLPAE 188
Query: 174 ------CMNIEVFKEIFHAIMSAPQAQVEKQLCLLNETIHR 208
N ++ +++F +M+ +++Q L E R
Sbjct: 189 VGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQTAKLLERTDR 229
Score = 38.0 bits (87), Expect = 0.003
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 214 IATLCSLLNYKFGPPEAKLLIPVIKDESC------RFYLPPVADFGVAKIQVSSYHSPH 266
+ L +L Y + E + + S Y PP+A+F V +
Sbjct: 313 VKNLVEMLTYSYESVEKQKMPLQEFPRSKGDAVKSVLYDPPIAEFSVLQTIFDKSKGGK 371
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A
{Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Length = 394
Score = 141 bits (355), Expect = 1e-39
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 23/226 (10%)
Query: 6 SIQTYEWGKIGLDSKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLES 65
S+Q Y WG + + +L G + + AELW+G HP S I + + +L
Sbjct: 10 SVQNYAWGS---KTALTEL---YGIANPQQQPMAELWMGAHPKSSSRITTANGETVSLRD 63
Query: 66 WIKNNP-HCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKLHRE-------- 116
I+ N LG V ++FGE LPFL KVL + LSIQ+HP+K + +
Sbjct: 64 AIEKNKTAMLGEAVANRFGE-LPFLFKVLCAAQPLSIQVHPNKRNSEIGFAKENAAGIPM 122
Query: 117 --FPDIYKDENHKPELAIALSKFEALCGFKPLERIKKNIEETKELQAVIGESLVKSMVSC 174
YKD NHKPEL AL+ F A+ F+ I ++ + I L
Sbjct: 123 DAAERNYKDPNHKPELVFALTPFLAMNAFREFSDIVSLLQPVAGAHSAIAHFL-----QV 177
Query: 175 MNIEVFKEIFHAIMSAPQAQVEKQLCLLNETIHRTGYSVIATLCSL 220
N E ++F ++++ + + L +L ++ T+ +
Sbjct: 178 PNAERLSQLFASLLNMQGEEKSRALAVLKAALNSQQGEPWQTIRVI 223
Score = 40.5 bits (94), Expect = 3e-04
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 14/154 (9%)
Query: 126 HKPELAIALSKFEALC--GFKPLERIKKNIEETKELQAVIGESLVKSMVSCMNIEVF--- 180
E + AL+ +A + + I E + + L+ ++V E
Sbjct: 194 QGEEKSRALAVLKAALNSQQGEPWQTIRVISEYYPDDSGLFSPLLLNVVKLNPGEAMFLF 253
Query: 181 KEIFHAIMSAPQAQVEKQLCLLNETIHRTGYSV----IATLCSLLNYKFGPPEAKLLIPV 236
E HA + +V ++ + R G + I L + + ++ P L PV
Sbjct: 254 AETPHAYLQGVALEVMAN----SDNVLRAGLTPKYIDIPELVANVKFEPKPAGELLTAPV 309
Query: 237 IKDESCRFYLPPVADFGVAKIQVSSYHSPHSHQG 270
+ PV DF + ++ +
Sbjct: 310 KSGAELD-FPIPVDDFAFSLHDLALQETSIGQHS 342
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus}
SCOP: b.82.1.3
Length = 300
Score = 65.7 bits (160), Expect = 1e-12
Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 13/125 (10%)
Query: 35 DKNYAELW-LGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEKLPFLLKVL 93
E W H S PS++L + + ++ + L +F + P L++++
Sbjct: 33 QSGIGESWEFSAHTSRPSTVLVK-GQQLSMIELFSKHRDELLGRAAEKFSK-FPILVRLI 90
Query: 94 SVDKALSIQMHPSKEQAVKLHREFPDIYKDENHKPELAIALSKFEALCGFKP---LERIK 150
+ +HPS + A L E + +K +A GFK +E ++
Sbjct: 91 DAASPTQVHVHPSDKAAESLGEA-------EGGVESAWLVFNKGKAYAGFKEDVKIEELE 143
Query: 151 KNIEE 155
+ ++E
Sbjct: 144 EKLKE 148
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose
6-phosphate, PSI, protein structure initiative; 1.80A
{Bacillus subtilis} SCOP: b.82.1.3
Length = 319
Score = 56.2 bits (135), Expect = 2e-09
Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 35/253 (13%)
Query: 35 DKNYAELW-LGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEKLPFLLKVL 93
++ E W + HP GPS++ + + + L + + G G++ P L K+L
Sbjct: 35 SESTGECWAISAHPKGPSTVANGPYKGKTLIELWEEHREVFG----GVEGDRFPLLTKLL 90
Query: 94 SVDKALSIQMHPSKEQAVKLHREFPDIYKDENHKPELAIALSKFE---ALCGFKPL--ER 148
V + SI++HP A + E K E + E + G
Sbjct: 91 DVKEDTSIKVHPDDYYA-GENEEGE------LGKTECWYIIDCKENAEIIYGHTARSKTE 143
Query: 149 IKKNIEETKELQAVIGESLVKSMVSCMNIEVFKEIFHAI-----MSAPQA------QVEK 197
+ I + + V HA+ + Q +V
Sbjct: 144 LVTMINSGDWEGLLRRIKIKPGDF----YYVPSGTLHALCKGALVLETQQNSDATYRVYD 199
Query: 198 QLCLLNETIHRTGYSVIATLCSLLNYKFGPPEAKLLIPVIKDESCRFYLPPVADFGVAKI 257
L + R + A + K + + F V K
Sbjct: 200 YDRLDSNGSPRELH--FAKAVNAATVPHVDGYIDESTESRKGITIK-TFVQGEYFSVYKW 256
Query: 258 QVSSYHSPHSHQG 270
++ +
Sbjct: 257 DINGEAEMAQDES 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 5e-08
Identities = 56/359 (15%), Positives = 100/359 (27%), Gaps = 141/359 (39%)
Query: 19 SKVAQLVEAAGGTVDKDKN-----YAELWLGTHP--SGPSSILSQCSRSE---------- 61
+ A+L++ T+ K K + P +S L +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 62 --NLESWIK------NNPHCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHPSKEQAVKL 113
N + + + H L D+I E L L++ + A K+
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR--------------TTLDAEKV 208
Query: 114 HREFPDIY---KDENHKPE---LAIA-----------LSKFEALC---GFKPLERIKKNI 153
+ +I ++ ++ P+ L L+ + GF P E
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 154 EETKELQAVI----------GESLVKSMVSCMNI---------EVF-----------KEI 183
T Q ++ ES S+ + + E + +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 184 FH---------AIMSAPQAQVEKQLCLLNETIHRTGYSVIATLCSLLN--YKF---GPPE 229
+ +I + Q QV+ + N + I SL+N GPP+
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI----SLVNGAKNLVVSGPPQ 384
Query: 230 A---------KLLIPVIKDES------------CRFYLPPVADFGVAKIQVSS-YHSPH 266
+ K P D+S RF LP V+S +HS
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LP-----------VASPFHSHL 431
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.033
Identities = 41/242 (16%), Positives = 74/242 (30%), Gaps = 86/242 (35%)
Query: 41 LWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEKLPFLLKVLSVDKALS 100
+W S ++++ + +E K + IS +P L
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKES-------TIS-----IP--------SIYLE 434
Query: 101 IQMHPSKEQAVKLHREFPDIYK-----DENHKPELAIALSKFEALCGFKPLERIKKNIEE 155
+++ E A LHR D Y D + + + + G L KNIE
Sbjct: 435 LKVKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-GHH-L----KNIEH 486
Query: 156 TKELQAVIGESLVKSMVSCMNIEVFKEIFHAIMSAPQAQVEKQLCL--LNETIHRTGY-- 211
+ + +F+ +F L L + I
Sbjct: 487 PER------------------MTLFRMVF--------------LDFRFLEQKIRHDSTAW 514
Query: 212 ----SVIATLCSLLNYKFGPPEAKLLIPVIKDESCRF--YLPPVADFGVAKIQVSSYHSP 265
S++ TL L YK P I D ++ + + DF + KI+ + S
Sbjct: 515 NASGSILNTLQQLKFYK----------PYICDNDPKYERLVNAILDF-LPKIEENLICSK 563
Query: 266 HS 267
++
Sbjct: 564 YT 565
Score = 30.2 bits (67), Expect = 0.78
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 12/103 (11%)
Query: 114 HREFPDIYKDENHKPELAIALSKFEALCGFKPLERIKKNIEETKELQAVIGESLVKSMVS 173
H +F +K L++ F K ++ + K+I +E+ +I
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK------- 58
Query: 174 CMNIEVFKEIFHAIMSAPQAQVEKQLCLLNETIHRTGYSVIAT 216
+ +F ++S + V+K + E + R Y + +
Sbjct: 59 -DAVSGTLRLFWTLLSKQEEMVQKFV----EEVLRINYKFLMS 96
Score = 29.4 bits (65), Expect = 1.5
Identities = 28/214 (13%), Positives = 67/214 (31%), Gaps = 59/214 (27%)
Query: 77 DVISQFGEK----------LPFLLKVLSVDKALSIQMHPSKEQAVK-----LHREFPDIY 121
D++S F + +LS ++ I M L + ++
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 122 K---DENHKPELAIALSKFEALCGFKPLERIKKNIEETKELQAVIGESLVKSMVSCMNIE 178
+ +E + +S + +P + IE+ L + K VS ++
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYND-NQVFAKYNVS--RLQ 135
Query: 179 VFKEIFHAIMSAPQAQVEKQLCLLNETIHR---TGYSVIATLCSLLNYKFGPPEAKLLIP 235
+ ++ A++ + + K + I +G + +A +
Sbjct: 136 PYLKLRQALL---ELRPAKNV-----LIDGVLGSGKTWVA------------------LD 169
Query: 236 VIKDES--CRFYLPPVADFGVAKIQVSSYHSPHS 267
V C+ DF + + + + +SP +
Sbjct: 170 VCLSYKVQCKM------DFKIFWLNLKNCNSPET 197
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.41
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 107 KEQAVKLHREFPDIYKDENHKPELAI 132
K+ KL +Y D++ P LAI
Sbjct: 19 KQALKKLQASL-KLYADDS-APALAI 42
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein
binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo
sapiens} PDB: 3al3_A*
Length = 235
Score = 30.1 bits (67), Expect = 0.60
Identities = 12/64 (18%), Positives = 24/64 (37%)
Query: 19 SKVAQLVEAAGGTVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDV 78
+ +L+++ G V + TH + L N+ N +CL T+
Sbjct: 151 AGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEY 210
Query: 79 ISQF 82
I+ +
Sbjct: 211 IADY 214
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 29.6 bits (67), Expect = 1.1
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 128 PELAIALSKFEAL----CGFKPLERIKKNIEETKEL 159
P+LA A+ + L G+K + + + I+ + L
Sbjct: 25 PQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGL 60
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization
module, P-BODY component, asymmetric assembly; 2.31A
{Homo sapiens}
Length = 51
Score = 25.9 bits (56), Expect = 2.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 44 GTHPSGPSSILSQCSRSENLESWIKNNPHCLGT 76
G H + S ILS+ + L IKN+ L T
Sbjct: 1 GPHMADLSIILSKSQLQDTLIHLIKNDSSFLST 33
>2raa_A Pyruvate synthase subunit PORC; TM0015, pyruvate oxidoreductase
subunit PORC (EC 1.2.7.1), S genomics; HET: MSE; 2.12A
{Thermotoga maritima MSB8}
Length = 204
Score = 27.6 bits (62), Expect = 3.5
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 132 IALSKFEALCGFKPLERIKKNIEETKELQAVIGESLVKSMVSCMNIEVFKEIFHAI 187
L + G PLE I+K IE+ + ++ N + + +
Sbjct: 152 PMLGALVRVTGIVPLEAIEKRIEKM--FGKKFPQEVID-----ANKRALRRGYEEV 200
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 27.1 bits (60), Expect = 6.2
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 219 SLLNYKFGPPEAKLL--IPVIKDESCRFYLPPVADFGVAKI 257
+L++ P E L IPVI + F+ P + G KI
Sbjct: 237 TLVHIALKPEERALYKNIPVIFNIERGFFFEPDEERGEIKI 277
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix,
8-oxoguanine, 8-OXOG, DNA damage, DNA repair,
glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Length = 207
Score = 26.9 bits (59), Expect = 6.9
Identities = 8/89 (8%), Positives = 24/89 (26%), Gaps = 9/89 (10%)
Query: 147 ERIKKNIEETKELQAVIGESLVKSMVSCM---------NIEVFKEIFHAIMSAPQAQVEK 197
R+ + ++E + E + + C+ + + I A + ++
Sbjct: 13 ARVLERVDEFRLNNLSNEEVWFRELTLCLLTANSSFISAYQALNCLGQKIYYANEEEIRN 72
Query: 198 QLCLLNETIHRTGYSVIATLCSLLNYKFG 226
L + I + +
Sbjct: 73 ILKSCKYRFYNLKAKYIIMAREKVYGRLK 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,993,976
Number of extensions: 226885
Number of successful extensions: 588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 26
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)