RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12637
(270 letters)
>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida
albicans) [TaxId: 5476]}
Length = 440
Score = 188 bits (479), Expect = 7e-58
Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 20/221 (9%)
Query: 6 SIQTYEWGKIGLDSKVAQLVEAAGGT--VDKDKNYAELWLGTHPSGPSSILSQCSRSENL 63
Q Y+WGKIG S VAQ V + + +D+ K YAELW+GTHPS PS + +++ L
Sbjct: 11 GYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKAIDLNNQT--L 68
Query: 64 ESWIKNNP-HCLGTDVISQFGE--KLPFLLKVLSVDKALSIQMHPSKEQAVKLHREFPDI 120
+ P LG +I++FG +LPFL KVLS++K LSIQ HP K+ +LH P
Sbjct: 69 RDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQLHAADPKN 128
Query: 121 YKDENHKPELAIALSKFEALCGFKPLERIKKNIEETKELQAVIGESLVKSMVSCM----- 175
Y D+NHKPE+AIA++ FE CGFKPL+++ K + EL +IG+ LV +S +
Sbjct: 129 YPDDNHKPEMAIAVTDFEGFCGFKPLDQLAKTLATVPELNEIIGQELVDEFISGIKLPAE 188
Query: 176 --------NIEVFKEIFHAIMSAPQAQVEKQLCLLNETIHR 208
N ++ +++F +M+ +++Q L E R
Sbjct: 189 VGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQTAKLLERTDR 229
Score = 31.7 bits (71), Expect = 0.087
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 214 IATLCSLLNYKFGPPEAKLLIPVIKDES------CRFYLPPVADFGVAKIQV 259
+ L +L Y + E + + S Y PP+A+F V +
Sbjct: 313 VKNLVEMLTYSYESVEKQKMPLQEFPRSKGDAVKSVLYDPPIAEFSVLQTIF 364
>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus
subtilis [TaxId: 1423]}
Length = 315
Score = 89.7 bits (222), Expect = 1e-21
Identities = 37/245 (15%), Positives = 75/245 (30%), Gaps = 39/245 (15%)
Query: 35 DKNYAELW-LGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEKLPFLLKVL 93
++ E W + HP GPS++ + + + L + + G G++ P L K+L
Sbjct: 31 SESTGECWAISAHPKGPSTVANGPYKGKTLIELWEEHREVFGG----VEGDRFPLLTKLL 86
Query: 94 SVDKALSIQMHPSKEQAVKLHREFPDIYKDENHKPELAIALS---KFEALCGFKPLERIK 150
V + SI++HP A + + E K E + E + G +
Sbjct: 87 DVKEDTSIKVHPDDYYAGENE-------EGELGKTECWYIIDCKENAEIIYGHTARSKT- 138
Query: 151 KNIEETKELQAVIGESLVKSMVSCMNIEVFKEIF------HAIMS-----APQAQVEKQL 199
EL +I + ++ + I+ + HA+ Q +
Sbjct: 139 -------ELVTMINSGDWEGLLRRIKIKPGDFYYVPSGTLHALCKGALVLETQQNSDATY 191
Query: 200 CLLN-ETIHRTGYSV---IATLCSLLNYKFGPPEAKLLIPVIKDESCRFYLPPVADFGVA 255
+ + + + G A + + F V
Sbjct: 192 RVYDYDRLDSNGSPRELHFAKAVNAATVPHVDGY-IDESTESRKGITIKTFVQGEYFSVY 250
Query: 256 KIQVS 260
K ++
Sbjct: 251 KWDIN 255
>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase
AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 299
Score = 88.2 bits (218), Expect = 4e-21
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 10/133 (7%)
Query: 34 KDKNYAELW-LGTHPSGPSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEKLPFLLKV 92
+ E W H S PS++L + + ++ + L +F + P L+++
Sbjct: 31 RQSGIGESWEFSAHTSRPSTVLVK-GQQLSMIELFSKHRDELLGRAAEKFSK-FPILVRL 88
Query: 93 LSVDKALSIQMHPSKEQAVKLHREFPDIYKDENHKPELAIALSKFEALCGFKPLERIKKN 152
+ + +HPS + A L E + +K +A GFK +I++
Sbjct: 89 IDAASPTQVHVHPSDKAAESLGE-------AEGGVESAWLVFNKGKAYAGFKEDVKIEEL 141
Query: 153 IEETKELQAVIGE 165
E+ KE
Sbjct: 142 EEKLKEEDFDFKT 154
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 265
Score = 27.4 bits (60), Expect = 1.8
Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 13/106 (12%)
Query: 137 FEALCGFKPLERIKKNIEETKELQAVI--GESLVKSMVSCMNIEVFKEI-----FHAIMS 189
+ IK+N E + M + +E+ ++
Sbjct: 140 EGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTD 199
Query: 190 APQAQVEKQLCLLNETIHRTGYSVIATLCSLLNYKFGPPEAKLLIP 235
V + LN TI + L+ FG P L++P
Sbjct: 200 DTLVVVLARAGSLNPTI------RAGYVKDLIREDFGDPPHILIVP 239
>d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB
{Streptococcus mutans [TaxId: 1309]}
Length = 119
Score = 26.6 bits (59), Expect = 1.9
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 45 THPSG-PSSILSQCSRSENLESWIKNNPHCLGTDVISQFGEK 85
T +G P I+S+ + + + N GT VI FG +
Sbjct: 3 TFWNGFPEEIISKIEKFSGRKVIREANKPYSGTAVIDDFGPR 44
>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 291
Score = 27.1 bits (60), Expect = 2.2
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 23/74 (31%)
Query: 72 HCLGTDVISQFGEKLPFLLKVLSVDKALSIQMHP--------SKEQAVKLHREFPDIYKD 123
G D++ Q G + HP + A+ E D+ +
Sbjct: 228 RLFGKDLVIQAGG---------------GVMGHPDGPRAGAKALRDAIDAAIEGVDLDEK 272
Query: 124 ENHKPELAIALSKF 137
PEL +L +
Sbjct: 273 AKSSPELKKSLREV 286
>d2bi0a2 d.38.1.4 (A:186-337) Hypothetical protein Rv0216/MT0226
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 152
Score = 25.7 bits (56), Expect = 3.8
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 18 DSKVAQLVEAAGGTVDKDKNYAELWLGTHP 47
++ + V A L L
Sbjct: 21 AGIAGAVLHSTADLVSGAPELARLTLNIAA 50
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 25.3 bits (55), Expect = 4.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 31 TVDKDKNYAELWLGTHPSGPSSILSQCSRSENLESWIK 68
V+ D LW+G P+ + I+ + S EN + WIK
Sbjct: 74 HVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIK 111
>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese
five-pace snake (Agkistrodon acutus), acutolysin C
[TaxId: 36307]}
Length = 197
Score = 25.9 bits (56), Expect = 4.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 48 SGPSSILSQCSRSENLESWIKNNPHCL 74
SGP+ S CS+ + + P CL
Sbjct: 169 SGPAKSFSDCSKHDYQSFLTIHKPQCL 195
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 973,916
Number of extensions: 43680
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 15
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)