BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12638
(334 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P70188|KIFA3_MOUSE Kinesin-associated protein 3 OS=Mus musculus GN=Kifap3 PE=1 SV=1
Length = 793
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 191/319 (59%), Gaps = 39/319 (12%)
Query: 55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
+KLS++ NK M ++++EKL +++ E +L + TL+LL NLSFDT LR K++++G L
Sbjct: 328 KKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLL 387
Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
PKL +LL +++I + +LYH+S++DR K+MFAYT+C+ LM ML D+ D L++
Sbjct: 388 PKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELIS 447
Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
CINLA N RN +L+ + L++LM +A K+ LL+K+IRN+S H K+ F+DY+GD
Sbjct: 448 FCINLAANKRNVQLICEGNGLKMLMKRALKLKDPLLMKMIRNISQHDGPTKNLFIDYVGD 507
Query: 234 IANCVQKEKDENIKLECLGT--------------------------------------LE 255
+A + +++E +ECLGT LE
Sbjct: 508 LAAQISSDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPFLKDKLKPGAAEDDLVLE 567
Query: 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNY 315
V+ IGT + D A K+ + LI LL QEDDE V QI+YVFYQ+ H + ++
Sbjct: 568 VVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDV 627
Query: 316 LIKETDAPAYMIDLLNDGN 334
+IKET APAY+IDL++D N
Sbjct: 628 IIKETQAPAYLIDLMHDKN 646
>sp|Q92845|KIFA3_HUMAN Kinesin-associated protein 3 OS=Homo sapiens GN=KIFAP3 PE=1 SV=2
Length = 792
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 191/319 (59%), Gaps = 39/319 (12%)
Query: 55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
+KLS++ NK M ++++EKL +++ E +L + TL+LL NLSFDT LR K++++G L
Sbjct: 328 KKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLL 387
Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
PKL +LL +++I + +LYH+S++DR K+MFAYT+C+ LM ML D+ D L++
Sbjct: 388 PKLTALLGNDNYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELIS 447
Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
CINLA N RN +L+ + L++LM +A K+ LL+K+IRN+S H K+ F+DY+GD
Sbjct: 448 FCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGD 507
Query: 234 IANCVQKEKDENIKLECLGTL--------------------------------------E 255
+A + +++E +ECLGTL E
Sbjct: 508 LAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLE 567
Query: 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNY 315
V+ IGT + D A K+ + LI LL QEDDE V QI+YVFYQ+ H + ++
Sbjct: 568 VVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDV 627
Query: 316 LIKETDAPAYMIDLLNDGN 334
+IKET APAY+IDL++D N
Sbjct: 628 IIKETQAPAYLIDLMHDKN 646
>sp|Q26626|KIFA3_STRPU Kinesin-associated protein 3 OS=Strongylocentrotus purpuratus
GN=KAP115 PE=1 SV=1
Length = 828
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 185/319 (57%), Gaps = 39/319 (12%)
Query: 55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
+KL +Y NK +MA +IE+L +++ + +L + TL+LL NLSFDT+LR K+IK+G L
Sbjct: 327 KKLGIYVENKNEMAEQQIIERLAKLVPCDHEDLLNITLRLLLNLSFDTDLRGKMIKLGML 386
Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
PK V LL H+ ++L +LYH+S +D+ K+MF YT+C+ ++M M+L + + LVA
Sbjct: 387 PKFVELLANDNHRLVVLCVLYHVSQDDKAKSMFTYTDCIPMIMKMMLESPTERLEIELVA 446
Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNV-KHYFVDYIGD 233
L INLA N NA+L+ + L LLM +A ++ LLLK+IRN+S H K F++YI D
Sbjct: 447 LGINLACNKHNAQLICEGNGLRLLMRRALKFRDPLLLKMIRNISQHDGPSKAQFIEYISD 506
Query: 234 IANCVQKEKDENIKLECLG--------------------------------------TLE 255
+A +++ DE + +E LG LE
Sbjct: 507 VARIIKESNDEELVVEALGIMANLTIPDLDYEMIINEFGLVPWIKEKLEPGAAEDDLVLE 566
Query: 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNY 315
V+ +GT A+D A K+ + LI LL QEDDEIV QI+YVFYQ+ H + +
Sbjct: 567 VVMLVGTVATDDSCAAMLAKSGIIQSLIELLNAKQEDDEIVCQIVYVFYQMVFHEATREV 626
Query: 316 LIKETDAPAYMIDLLNDGN 334
+IK T APAY+IDL++D N
Sbjct: 627 IIKLTQAPAYLIDLMHDKN 645
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15
PE=2 SV=2
Length = 660
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE 122
N+ +AN I L ++L DS +Q + + L NLS D ++ I G +P ++ +LE
Sbjct: 413 NRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSIDEVNKKLISNEGAIPNIIEILE 472
Query: 123 EGKHQ--KIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA 180
G + + L+ LS+ D K +N + L+++L + L AL NL+
Sbjct: 473 NGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALTAL-FNLS 531
Query: 181 LNSRNAELMLKNRQLELLMIQA 202
LNS N K R ++ ++Q
Sbjct: 532 LNSAN-----KGRAIDAGIVQP 548
>sp|Q9FJP6|PUB38_ARATH U-box domain-containing protein 38 OS=Arabidopsis thaliana GN=PUB38
PE=1 SV=1
Length = 556
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 87 LQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKH--QKIILQLLYHLSIEDRVK 144
+Q++ L L NLS D + I+++GF+P L+ +L+ G Q+ ++ LS+ED K
Sbjct: 282 VQTNALASLVNLSLDKKNKLTIVRLGFVPILIDVLKSGSREAQEHAAGTIFSLSLEDDNK 341
Query: 145 AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK 191
+ L++ L + D T + +L LN N +++
Sbjct: 342 MPIGVLGALQPLLHALRAAESDRTRHDSALALYHLTLNQTNRSKLVR 388
>sp|Q0WUF6|PUB41_ARATH U-box domain-containing protein 41 OS=Arabidopsis thaliana GN=PUB41
PE=2 SV=1
Length = 559
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 78 RILMIEDSNL-QSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLL 134
R L++ NL Q++ + NLS + + KI++ GF+P L+ +L+ G + Q+ + L
Sbjct: 282 RSLLVSRYNLVQTNAAASVVNLSLEKQNKVKIVRSGFVPLLIDVLKSGTTEAQEHVAGAL 341
Query: 135 YHLSIEDRVKAMFAYTNCMSLLMNML 160
+ L++ED K + + L++ L
Sbjct: 342 FSLALEDENKMVIGVLGAVEPLLHAL 367
>sp|Q9M224|ADLO2_ARATH Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1
Length = 928
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQ 132
+E L ++ ++ L+NL+FD RE I G + LV+L + + LQ
Sbjct: 603 LEALVQLTQSPHEGVKQEAAGALWNLAFDDKNRESIAAFGGVEALVALAKSSSNASTGLQ 662
Query: 133 -----LLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNA 186
L+ LS+ + + + L+ ++ E +D + AL NL+ N NA
Sbjct: 663 ERVAGALWGLSVSEANSIAIGHEGGIPPLIALVRSEAEDVHETAAGALW-NLSFNPGNA 720
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 48 REGRQDSRKLSVYHV---------NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNL 98
R G QD ++ + + N+ +A I L +L D Q + L NL
Sbjct: 333 RSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNL 392
Query: 99 SFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLL 156
S N + I+ +PK+V +L+ G + ++ L+ LS+ D K + L
Sbjct: 393 SIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPL 452
Query: 157 MNML 160
+N+L
Sbjct: 453 INLL 456
>sp|Q9STT1|PUB39_ARATH U-box domain-containing protein 39 OS=Arabidopsis thaliana GN=PUB39
PE=2 SV=1
Length = 509
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 88/188 (46%), Gaps = 12/188 (6%)
Query: 78 RILMIEDSNL-QSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLL 134
R L++ N+ Q++ + NLS + + KI++ GF+P L+ +L+ G + Q+ ++ L
Sbjct: 231 RSLIVSRYNIVQTNAAASIVNLSLEKPNKLKIVRSGFVPLLIDVLKSGSTEAQEHVIGAL 290
Query: 135 YHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDET--DNVLVALCINLALNSRNAELMLKN 192
+ L++E+ K + + L++ L + + D L ++L N+R+ +
Sbjct: 291 FSLAVEEENKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPNNRSRLVKAGA 350
Query: 193 RQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVD------YIGDIANCVQKEKDENI 246
+ L MI++ + +L ++ N++ S K +D +G + E D
Sbjct: 351 VPMMLSMIRSGESAS-RILLLLCNLAACSEGKGAMLDGNAVSILVGKLRESGGAESDAAA 409
Query: 247 KLECLGTL 254
+ C+G L
Sbjct: 410 RENCVGAL 417
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Query: 57 LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKL-LFNLSFDTNLREKIIKIGFLP 115
L+V NK + L +E L L +S L L++LS N R +++K G +P
Sbjct: 293 LAVEEENKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPNNRSRLVKAGAVP 352
Query: 116 KLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVAL 175
++S++ G+ IL LL +L+ K N +S+L+ L E+D
Sbjct: 353 MMLSMIRSGESASRILLLLCNLAACSEGKGAMLDGNAVSILVGKLRESGGAESDAAAREN 412
Query: 176 CINLALN 182
C+ L
Sbjct: 413 CVGALLT 419
>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6
PE=2 SV=2
Length = 771
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 88 QSSTLKLLFNLSFDTNL-REKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAM 146
Q + LFNL+ + N +E ++ G +P L ++ + Q L +LS ++ K +
Sbjct: 487 QETGAMALFNLAVNNNRNKELMLTSGVIPLLEKMISCSQSQGPATALYLNLSCLEKAKPV 546
Query: 147 FAYTNCMSLLMNMLLVEQDDETDNVLVAL--CINLALNSRNAELMLKNRQLELLMIQAFT 204
+ +S +N+LL QD +T L AL NL+ S N +L + ++ L + A T
Sbjct: 547 IGSSQAVSFFVNLLL--QDTKTQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQVLAST 604
Query: 205 QKNILL---LKVIRNMSIHSNVKHYFVDYIGDIAN 236
++ + L V+ N++ K + G I+
Sbjct: 605 GNHLWIEKSLAVLLNLASSREGKEEMITTQGMIST 639
>sp|Q9FL17|PUB40_ARATH U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40
PE=2 SV=2
Length = 550
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 66 QMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG- 124
+ +I L +++ + +Q + +L NLS + + + KI++ G +P L+ +L+ G
Sbjct: 265 SLCTTRVISALKSLIVSRYATVQVNVTAVLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGS 324
Query: 125 -KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQD-DETDNVLVALCINLALN 182
+ Q+ +++ L++ED K + L++++ V + D+ L ++L +
Sbjct: 325 VEAQEHSAGVIFSLALEDENKTAIGVLGGLEPLLHLIRVGTELTRHDSALALYHLSLVQS 384
Query: 183 SRNAELMLKNRQLELLMIQ 201
+R + L Q+ L M+
Sbjct: 385 NRGKLVKLGAVQMLLGMVS 403
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 57 LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKI-GFLP 115
LS+ +NK + + IE L +L + + ++ LF+LS RE+I + +
Sbjct: 541 LSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQ 600
Query: 116 KLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLV 173
LV+LL +G + +K L++LSI KA + L+ +L + D E + V
Sbjct: 601 ALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELL--DPDLEMVDKAV 658
Query: 174 ALCINLALNSRNAELMLKNRQLELLM 199
AL NL+ + +++ + LL+
Sbjct: 659 ALLANLSAVGEGRQAIVREGGIPLLV 684
>sp|Q5EFZ4|VAC8_PICPA Vacuolar protein 8 OS=Komagataella pastoris GN=VAC8 PE=3 SV=3
Length = 556
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 57 LSVYHVNKEQMANL--NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
++V N++++A+ LI +L +++ +Q L NL+ D N + +I++ G L
Sbjct: 236 IAVDEGNRKKLASTEPKLISQLVQLMDSTSPRVQCQATLALRNLASDANYQLEIVRAGGL 295
Query: 115 PKLVSLLEEGKHQKIIL 131
P LV+LL HQ ++L
Sbjct: 296 PNLVTLL-NSTHQPLVL 311
>sp|Q613V4|GPA12_CAEBR Guanine nucleotide-binding protein alpha-12 subunit
OS=Caenorhabditis briggsae GN=gpa-12 PE=3 SV=1
Length = 355
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 149 YTNCMSLLMNMLLVEQDDETDNVLVA-LCINLALNSRNA-ELMLKNRQLELLMIQAFTQK 206
+ C + + ++L + +E D V++ N + SR+ E ++ NR + I F K
Sbjct: 212 WFQCFTDITSILFMVASNEYDQVILEDRRTNRVVESRSVFETIVNNRSFSNVSIILFMNK 271
Query: 207 NILLLKVIRNMSIHSNVKHYFVDYIGD 233
N LL + + S+++ YF D+ GD
Sbjct: 272 NDLLQEKVPK----SDIRQYFTDFTGD 294
>sp|Q0DV28|ARK1_ORYSJ Armadillo repeat-containing kinesin-like protein 1 OS=Oryza sativa
subsp. japonica GN=Os03g0152900 PE=2 SV=2
Length = 945
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 76 LPRILMIEDSN---LQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKH---QKI 129
LP +L + S+ +Q +K++ NL+ + +EKI++ G L L+SLLE ++ ++
Sbjct: 695 LPNVLALLKSDELEVQIHAVKVVANLAAEDVNQEKIVEEGGLDALLSLLETSENTTIHRV 754
Query: 130 ILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELM 189
+ +L++ + + LL N+ D +T ++ NL N + ++
Sbjct: 755 TAGAIANLAMNGSNQGLIMNKGGARLLANIASKTNDPQTLRMVAGALANLCGNEKLHVML 814
Query: 190 LKNRQLELLMIQAFTQKNILLLKVIRNMS 218
++ ++ L+ T N ++ ++ R M+
Sbjct: 815 KQDGGIKALLGMFRTGHNEVIAQIARGMA 843
>sp|Q19572|GPA12_CAEEL Guanine nucleotide-binding protein alpha-12 subunit
OS=Caenorhabditis elegans GN=gpa-12 PE=2 SV=2
Length = 355
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 149 YTNCMSLLMNMLLVEQDDETDNVLVA-LCINLALNSRNA-ELMLKNRQLELLMIQAFTQK 206
+ C + + ++L + +E D V++ N + SR+ E ++ NR + I F K
Sbjct: 212 WFQCFTDITSILFMVASNEYDQVILEDRRTNRVVESRSVFETIVNNRAFSNVSIILFMNK 271
Query: 207 NILLLKVIRNMSIHSNVKHYFVDYIGD 233
N LL + + S+++ YF D+ GD
Sbjct: 272 NDLLQEKVPK----SDIRQYFTDFTGD 294
>sp|Q5W041|ARMC3_HUMAN Armadillo repeat-containing protein 3 OS=Homo sapiens GN=ARMC3 PE=2
SV=2
Length = 872
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 57 LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPK 116
+S + +K Q+ +E L R+L D +++ ++++ ++NL D R K+ ++ +P
Sbjct: 136 MSAEYTSKVQIFEHGGLEPLIRLLSSPDPDVKKNSMECIYNLVQDFQCRAKLQELNAIPP 195
Query: 117 LVSLLEEGKHQKIILQLL 134
++ LL K + ++QLL
Sbjct: 196 ILDLL---KSEYPVIQLL 210
>sp|Q9H254|SPTN4_HUMAN Spectrin beta chain, non-erythrocytic 4 OS=Homo sapiens GN=SPTBN4
PE=1 SV=2
Length = 2564
Score = 32.0 bits (71), Expect = 7.1, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 240 KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQI 299
+E + +C LE +G S+ IS + S VD L LKE+ E+ + L+
Sbjct: 1674 EESIAQLSRQCRALLE----MGHPDSEQISR----RQSQVDRLYVALKELGEERRVALEQ 1725
Query: 300 LYVFYQICRHASCQNYLIKETDAPAYMIDLLND 332
Y YQ+ R S + I E + A +L D
Sbjct: 1726 QYWLYQLSRQVSELEHWIAEKEVVAGSPELGQD 1758
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 98 LSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVK---AMFAYTNCMS 154
LSF + K+ K+GF P +V+ LL+ L +EDR+ A+F Y
Sbjct: 157 LSFSLSTFGKLTKLGFQPDVVTF----------NTLLHGLCLEDRISEALALFGYMVETG 206
Query: 155 LLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLE 196
L + L +Q E V + N +N L L+ R LE
Sbjct: 207 FLEAVALFDQMVEIGLTPVVITFNTLING----LCLEGRVLE 244
>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11
PE=2 SV=2
Length = 612
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 57 LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPK 116
LS+Y NKE + + + ++L + + LF+LS + I G +P
Sbjct: 400 LSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPA 459
Query: 117 LVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNML 160
LV LLE G + +K L++L I K ++ L+ ML
Sbjct: 460 LVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKML 505
>sp|Q9LPC6|ARK2_ARATH Armadillo repeat-containing kinesin-like protein 2 OS=Arabidopsis
thaliana GN=ARK2 PE=1 SV=2
Length = 894
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL---EEGKHQKI 129
++K+ ++L +D+N++ +K++ NL+ + +EKI++ G L L+ LL E+ +++
Sbjct: 638 LQKILQLLESDDANIRIHAVKVVANLAAEEANQEKIVEAGGLTSLLMLLRSYEDETVRRV 697
Query: 130 ILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELM 189
+ +L++ + + + +SLL +D +T ++ NL N +
Sbjct: 698 AAGAIANLAMNEVSQQLIVDQGGISLLSLTAADAEDPQTLRMVAGAIANLCGNDK----- 752
Query: 190 LKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIK 247
L+ R I+A LL ++R H +V I + A C + + +K
Sbjct: 753 LQARLWSDGGIKA-------LLGMVR--CGHPDVLAQVARGIANFAKCESRATTQGVK 801
>sp|Q6FJV1|VAC8_CANGA Vacuolar protein 8 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=VAC8 PE=3 SV=3
Length = 582
Score = 31.6 bits (70), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 57 LSVYHVNKEQMANLN--LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
++V N++++A L+ KL ++ S ++ L NL+ DT+ + +I++ G L
Sbjct: 235 IAVDEANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQATLALRNLASDTSYQLEIVRAGGL 294
Query: 115 PKLVSLLE 122
P LV+L++
Sbjct: 295 PHLVNLIQ 302
>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4
PE=1 SV=3
Length = 826
Score = 31.6 bits (70), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 67 MANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKH 126
+ N I L +L DS Q + + L NLS + N ++ I G + L+ +LE G
Sbjct: 579 IGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSS 638
Query: 127 QKI--ILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR 184
+ L+ LS+ + K + + L+++L + AL NL+++
Sbjct: 639 EAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATAL-FNLSIHQE 697
Query: 185 NAELMLKNRQLELLM 199
N +++++ + L+
Sbjct: 698 NKAMIVQSGAVRYLI 712
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,708,598
Number of Sequences: 539616
Number of extensions: 4271041
Number of successful extensions: 11205
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 11154
Number of HSP's gapped (non-prelim): 73
length of query: 334
length of database: 191,569,459
effective HSP length: 118
effective length of query: 216
effective length of database: 127,894,771
effective search space: 27625270536
effective search space used: 27625270536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)