Query psy12638
Match_columns 334
No_of_seqs 148 out of 467
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 15:43:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05804 KAP: Kinesin-associat 100.0 6.6E-61 1.4E-65 489.6 27.6 309 18-334 283-633 (708)
2 KOG1222|consensus 100.0 6.6E-62 1.4E-66 463.1 18.3 310 17-334 296-647 (791)
3 PF05804 KAP: Kinesin-associat 100.0 5.6E-33 1.2E-37 284.5 23.5 290 31-333 259-588 (708)
4 KOG1222|consensus 100.0 5.4E-28 1.2E-32 231.5 21.0 280 50-333 283-602 (791)
5 KOG4224|consensus 99.9 2.6E-26 5.7E-31 213.9 19.0 278 47-334 143-430 (550)
6 PLN03200 cellulose synthase-in 99.9 8.9E-22 1.9E-26 217.7 26.8 286 44-333 72-458 (2102)
7 PLN03200 cellulose synthase-in 99.9 1.2E-21 2.6E-26 216.7 26.0 287 37-334 411-748 (2102)
8 KOG4224|consensus 99.8 1.4E-20 3E-25 175.8 14.8 275 49-333 104-388 (550)
9 KOG0166|consensus 99.7 1.1E-15 2.4E-20 150.7 18.9 279 44-331 124-417 (514)
10 KOG1048|consensus 99.5 7.5E-13 1.6E-17 134.7 17.7 289 41-334 244-619 (717)
11 KOG0166|consensus 99.4 8.7E-12 1.9E-16 123.4 19.8 276 49-333 85-376 (514)
12 PF04826 Arm_2: Armadillo-like 99.4 6.9E-12 1.5E-16 115.7 16.1 172 45-221 28-207 (254)
13 PF04826 Arm_2: Armadillo-like 99.3 6.7E-11 1.5E-15 109.1 17.9 195 68-310 9-207 (254)
14 KOG2122|consensus 99.3 5.3E-11 1.2E-15 126.5 18.8 284 44-334 208-585 (2195)
15 COG5064 SRP1 Karyopherin (impo 99.3 5.2E-11 1.1E-15 111.3 15.9 269 49-331 134-424 (526)
16 cd00020 ARM Armadillo/beta-cat 99.2 2.8E-10 6.1E-15 91.3 11.1 114 66-180 2-119 (120)
17 PF10508 Proteasom_PSMB: Prote 99.2 5.6E-09 1.2E-13 105.7 22.0 281 45-328 92-440 (503)
18 KOG2122|consensus 99.1 1.2E-09 2.6E-14 116.5 15.2 255 49-312 317-605 (2195)
19 COG5064 SRP1 Karyopherin (impo 99.1 1.4E-09 3.1E-14 101.8 13.2 269 52-332 94-380 (526)
20 KOG1048|consensus 99.1 1E-09 2.3E-14 112.0 13.1 167 72-239 234-427 (717)
21 KOG4199|consensus 99.0 3.2E-08 6.9E-13 92.8 20.1 263 55-323 129-418 (461)
22 KOG4500|consensus 99.0 1.2E-08 2.7E-13 98.1 17.5 282 48-330 60-411 (604)
23 PF10508 Proteasom_PSMB: Prote 99.0 9.8E-08 2.1E-12 96.6 21.6 243 69-319 75-331 (503)
24 KOG4199|consensus 98.9 1.3E-07 2.8E-12 88.7 18.3 271 49-331 78-382 (461)
25 cd00020 ARM Armadillo/beta-cat 98.8 3.6E-08 7.8E-13 78.9 8.4 95 44-138 21-119 (120)
26 cd00256 VATPase_H VATPase_H, r 98.8 3E-07 6.4E-12 90.5 16.2 266 49-334 120-409 (429)
27 PF03224 V-ATPase_H_N: V-ATPas 98.6 3.6E-07 7.8E-12 87.0 10.6 155 49-204 124-293 (312)
28 PF03224 V-ATPase_H_N: V-ATPas 98.5 1.9E-06 4.2E-11 82.0 12.4 187 72-300 106-306 (312)
29 KOG0946|consensus 98.4 2E-05 4.4E-10 81.0 19.1 273 42-320 35-358 (970)
30 cd00256 VATPase_H VATPase_H, r 98.3 9.2E-05 2E-09 73.1 19.6 240 44-309 158-426 (429)
31 KOG4646|consensus 98.2 5.9E-06 1.3E-10 68.5 6.9 113 45-161 32-147 (173)
32 KOG2973|consensus 98.1 0.00036 7.8E-09 65.2 18.5 249 74-331 6-294 (353)
33 KOG0168|consensus 98.1 0.00021 4.5E-09 74.3 17.9 240 84-332 181-437 (1051)
34 KOG4500|consensus 98.0 0.00045 9.8E-09 67.3 18.1 241 49-291 106-416 (604)
35 PF00514 Arm: Armadillo/beta-c 98.0 8.5E-06 1.8E-10 53.6 3.8 39 61-99 2-40 (41)
36 KOG2160|consensus 97.9 0.00023 4.9E-09 67.8 12.7 163 41-204 94-263 (342)
37 KOG0168|consensus 97.8 0.00036 7.7E-09 72.6 13.4 233 48-289 186-438 (1051)
38 KOG2759|consensus 97.8 0.0021 4.6E-08 62.4 17.8 248 49-309 176-439 (442)
39 KOG1293|consensus 97.8 0.00016 3.5E-09 73.3 10.1 118 67-185 415-537 (678)
40 KOG4646|consensus 97.7 5.3E-05 1.1E-09 62.9 4.4 115 69-184 14-131 (173)
41 PF01602 Adaptin_N: Adaptin N 97.7 0.00066 1.4E-08 68.6 13.3 80 48-137 97-179 (526)
42 smart00185 ARM Armadillo/beta- 97.7 7.5E-05 1.6E-09 48.4 4.3 40 61-100 2-41 (41)
43 KOG1293|consensus 97.6 0.0014 3E-08 66.7 14.0 160 63-223 369-537 (678)
44 PF10165 Ric8: Guanine nucleot 97.6 0.003 6.6E-08 63.2 16.1 111 51-161 2-132 (446)
45 KOG2973|consensus 97.6 0.0029 6.2E-08 59.3 14.6 236 48-307 60-313 (353)
46 KOG2759|consensus 97.5 0.0047 1E-07 60.1 15.8 260 73-334 116-422 (442)
47 PRK09687 putative lyase; Provi 97.5 0.005 1.1E-07 57.8 15.6 93 72-179 24-118 (280)
48 PF00514 Arm: Armadillo/beta-c 97.5 0.00011 2.4E-09 48.2 3.0 38 101-138 1-40 (41)
49 PF05536 Neurochondrin: Neuroc 97.4 0.0049 1.1E-07 63.1 15.7 149 72-220 6-169 (543)
50 PRK09687 putative lyase; Provi 97.2 0.011 2.3E-07 55.6 14.2 77 47-138 40-119 (280)
51 PF01602 Adaptin_N: Adaptin N 97.2 0.0082 1.8E-07 60.7 14.3 161 45-221 129-298 (526)
52 KOG2160|consensus 97.2 0.026 5.7E-07 53.9 16.6 128 81-208 93-224 (342)
53 KOG1789|consensus 97.1 0.06 1.3E-06 57.9 19.2 281 49-332 1744-2099(2235)
54 PTZ00429 beta-adaptin; Provisi 97.0 0.041 8.8E-07 58.4 17.6 247 47-311 157-436 (746)
55 PF05536 Neurochondrin: Neuroc 96.9 0.0058 1.2E-07 62.7 10.2 131 52-184 27-171 (543)
56 KOG0946|consensus 96.9 0.22 4.8E-06 52.2 21.1 209 71-289 22-266 (970)
57 smart00185 ARM Armadillo/beta- 96.9 0.0017 3.7E-08 41.8 3.9 38 102-139 2-41 (41)
58 PF13646 HEAT_2: HEAT repeats; 96.6 0.0022 4.8E-08 48.5 3.5 80 73-172 1-83 (88)
59 KOG2734|consensus 96.4 0.29 6.4E-06 48.2 17.4 170 33-202 78-277 (536)
60 PTZ00429 beta-adaptin; Provisi 96.3 0.61 1.3E-05 49.7 20.9 136 72-216 141-279 (746)
61 PRK13800 putative oxidoreducta 96.3 0.31 6.7E-06 53.2 19.2 59 69-137 619-679 (897)
62 COG5369 Uncharacterized conser 96.3 0.0086 1.9E-07 60.0 6.5 134 50-184 409-548 (743)
63 KOG2171|consensus 96.2 0.2 4.3E-06 54.3 16.4 186 48-242 327-529 (1075)
64 PF14664 RICTOR_N: Rapamycin-i 96.1 0.12 2.5E-06 50.6 13.2 158 152-323 26-191 (371)
65 COG5231 VMA13 Vacuolar H+-ATPa 95.7 0.47 1E-05 45.1 14.7 225 75-307 153-427 (432)
66 PF04063 DUF383: Domain of unk 95.7 0.12 2.7E-06 45.7 10.3 112 80-192 4-143 (192)
67 PF11841 DUF3361: Domain of un 95.5 0.11 2.4E-06 44.6 9.1 125 66-191 6-143 (160)
68 KOG4413|consensus 95.3 1.7 3.7E-05 41.6 16.8 231 68-307 125-376 (524)
69 KOG1789|consensus 95.2 1 2.2E-05 49.1 16.5 92 49-141 1791-1885(2235)
70 KOG2734|consensus 95.2 1.4 3.1E-05 43.6 16.5 194 88-323 101-321 (536)
71 PF09759 Atx10homo_assoc: Spin 95.1 0.06 1.3E-06 42.8 5.9 64 87-150 2-71 (102)
72 KOG4413|consensus 94.9 2.4 5.1E-05 40.7 16.6 283 33-323 43-347 (524)
73 PF04078 Rcd1: Cell differenti 94.8 0.22 4.7E-06 46.1 9.4 188 43-232 8-231 (262)
74 KOG3678|consensus 94.8 0.34 7.4E-06 48.2 11.1 172 103-287 171-361 (832)
75 PF13513 HEAT_EZ: HEAT-like re 94.5 0.04 8.6E-07 38.1 3.0 54 45-98 2-55 (55)
76 KOG2171|consensus 94.5 3.6 7.7E-05 45.1 18.8 273 43-332 131-442 (1075)
77 PF04078 Rcd1: Cell differenti 93.8 0.62 1.3E-05 43.1 10.2 147 49-197 69-232 (262)
78 KOG3678|consensus 93.8 1.4 3.1E-05 44.0 13.1 197 33-239 179-389 (832)
79 KOG3036|consensus 93.8 1.2 2.5E-05 41.1 11.5 143 49-191 98-257 (293)
80 COG5369 Uncharacterized conser 93.6 0.33 7.2E-06 49.0 8.4 139 51-190 452-603 (743)
81 PRK13800 putative oxidoreducta 93.3 5.8 0.00013 43.4 18.2 71 47-137 669-741 (897)
82 KOG4464|consensus 93.0 0.72 1.6E-05 45.2 9.6 199 83-288 109-367 (532)
83 KOG1824|consensus 92.1 1.3 2.8E-05 47.7 10.6 231 70-310 46-288 (1233)
84 PF12755 Vac14_Fab1_bd: Vacuol 92.0 0.41 8.9E-06 37.6 5.4 85 50-136 6-93 (97)
85 COG5240 SEC21 Vesicle coat com 91.8 3.6 7.8E-05 42.2 12.9 67 73-141 266-334 (898)
86 KOG0212|consensus 91.5 6.5 0.00014 40.2 14.3 110 58-169 71-225 (675)
87 KOG2023|consensus 90.8 5.5 0.00012 41.6 13.2 163 73-238 130-304 (885)
88 PF13646 HEAT_2: HEAT repeats; 90.6 0.41 8.9E-06 35.8 4.1 68 47-134 17-87 (88)
89 PF08045 CDC14: Cell division 90.5 1.2 2.6E-05 41.3 7.8 74 229-307 133-206 (257)
90 KOG1059|consensus 90.2 3.3 7.2E-05 43.4 11.2 126 115-254 147-281 (877)
91 PF10165 Ric8: Guanine nucleot 90.2 2.5 5.3E-05 42.5 10.4 76 130-205 1-86 (446)
92 KOG1060|consensus 90.1 2.9 6.2E-05 44.3 10.8 166 126-331 303-476 (968)
93 PF14664 RICTOR_N: Rapamycin-i 90.0 21 0.00044 35.0 19.3 163 60-226 14-183 (371)
94 PF04063 DUF383: Domain of unk 89.8 3 6.6E-05 36.9 9.5 81 69-149 50-142 (192)
95 KOG3036|consensus 89.8 6.8 0.00015 36.2 11.7 137 83-221 91-249 (293)
96 PF13513 HEAT_EZ: HEAT-like re 89.1 0.67 1.5E-05 31.8 3.9 52 86-137 2-55 (55)
97 PF02985 HEAT: HEAT repeat; I 89.0 0.33 7.1E-06 29.5 2.0 29 72-100 1-29 (31)
98 PF09759 Atx10homo_assoc: Spin 88.9 1.8 3.8E-05 34.4 6.6 66 47-112 3-72 (102)
99 PF12031 DUF3518: Domain of un 88.9 0.83 1.8E-05 41.8 5.3 81 45-125 139-229 (257)
100 TIGR02270 conserved hypothetic 88.8 11 0.00023 37.5 13.5 80 72-173 118-199 (410)
101 KOG1061|consensus 87.5 1.6 3.5E-05 45.8 7.0 49 255-311 369-418 (734)
102 PF08045 CDC14: Cell division 87.1 2.5 5.5E-05 39.1 7.5 77 49-125 110-189 (257)
103 PF12348 CLASP_N: CLASP N term 86.3 2.9 6.3E-05 37.3 7.4 126 49-179 72-204 (228)
104 PF12031 DUF3518: Domain of un 85.4 1.2 2.7E-05 40.7 4.4 77 86-162 139-227 (257)
105 PF06371 Drf_GBD: Diaphanous G 85.1 0.99 2.1E-05 39.1 3.6 69 266-334 96-171 (187)
106 PF06025 DUF913: Domain of Unk 85.0 35 0.00077 33.5 14.7 117 86-204 75-207 (379)
107 KOG0212|consensus 84.2 11 0.00023 38.7 10.6 170 69-240 248-426 (675)
108 KOG2999|consensus 83.6 2.9 6.3E-05 42.6 6.4 141 36-177 89-238 (713)
109 PF12755 Vac14_Fab1_bd: Vacuol 83.5 3.3 7.1E-05 32.5 5.5 68 111-180 26-95 (97)
110 PF11701 UNC45-central: Myosin 83.3 4.5 9.8E-05 34.5 6.8 72 258-331 65-138 (157)
111 PF13764 E3_UbLigase_R4: E3 ub 82.6 62 0.0014 35.0 16.2 56 106-161 111-173 (802)
112 PF08216 CTNNBL: Catenin-beta- 80.6 3 6.5E-05 33.4 4.3 38 88-125 63-100 (108)
113 KOG1077|consensus 80.1 25 0.00054 37.2 11.7 175 4-192 220-408 (938)
114 KOG1240|consensus 80.1 23 0.0005 39.5 11.9 110 31-160 415-539 (1431)
115 KOG2611|consensus 79.9 74 0.0016 32.4 16.0 129 75-204 15-162 (698)
116 PF11841 DUF3361: Domain of un 79.5 26 0.00056 30.2 10.0 104 106-209 5-118 (160)
117 KOG1517|consensus 78.7 27 0.00058 38.6 11.7 148 150-309 511-672 (1387)
118 KOG1242|consensus 78.4 28 0.00061 35.9 11.5 130 45-182 269-402 (569)
119 KOG2023|consensus 78.2 19 0.00041 37.8 10.2 175 112-297 128-318 (885)
120 KOG1241|consensus 78.0 38 0.00083 36.0 12.4 245 72-334 130-419 (859)
121 COG5218 YCG1 Chromosome conden 77.6 4.8 0.0001 41.5 5.7 106 70-185 90-200 (885)
122 PF12348 CLASP_N: CLASP N term 76.8 9.8 0.00021 33.9 7.2 103 71-179 53-158 (228)
123 KOG1061|consensus 75.5 21 0.00046 37.8 9.8 68 72-141 122-191 (734)
124 PF05918 API5: Apoptosis inhib 74.1 3.7 7.9E-05 42.2 3.9 29 278-312 273-301 (556)
125 PF14668 RICTOR_V: Rapamycin-i 73.7 16 0.00035 27.1 6.3 60 256-316 7-66 (73)
126 PF04499 SAPS: SIT4 phosphatas 73.3 26 0.00057 35.5 9.8 34 104-137 54-90 (475)
127 PF12717 Cnd1: non-SMC mitotic 72.9 34 0.00073 29.5 9.3 105 47-162 5-112 (178)
128 KOG0213|consensus 72.2 1.5E+02 0.0032 32.0 17.4 246 73-333 638-937 (1172)
129 PF11701 UNC45-central: Myosin 71.7 9 0.0002 32.6 5.3 87 50-137 63-157 (157)
130 KOG2025|consensus 71.6 16 0.00035 38.6 7.8 116 68-190 82-199 (892)
131 KOG1077|consensus 71.5 1.5E+02 0.0032 31.7 15.4 93 215-318 314-407 (938)
132 KOG1062|consensus 71.0 1.6E+02 0.0034 31.8 18.3 177 78-268 114-326 (866)
133 COG5209 RCD1 Uncharacterized p 69.2 19 0.0004 33.0 6.8 142 49-190 119-277 (315)
134 PF14668 RICTOR_V: Rapamycin-i 68.4 21 0.00046 26.4 6.0 64 88-151 4-70 (73)
135 COG5231 VMA13 Vacuolar H+-ATPa 68.3 36 0.00078 32.8 8.8 118 46-164 165-292 (432)
136 KOG1824|consensus 68.2 1.6E+02 0.0035 32.5 14.3 84 73-162 695-782 (1233)
137 KOG2999|consensus 67.8 91 0.002 32.2 11.9 135 75-209 87-229 (713)
138 PF11698 V-ATPase_H_C: V-ATPas 66.9 6.8 0.00015 32.0 3.3 55 278-334 44-99 (119)
139 KOG1058|consensus 66.3 73 0.0016 34.1 11.2 156 78-254 106-267 (948)
140 KOG1060|consensus 65.1 70 0.0015 34.4 10.9 49 78-132 294-343 (968)
141 PF08324 PUL: PUL domain; Int 64.9 37 0.00081 31.1 8.4 154 45-198 77-248 (268)
142 PF07814 WAPL: Wings apart-lik 63.6 44 0.00095 32.5 8.9 100 225-331 17-116 (361)
143 PF02985 HEAT: HEAT repeat; I 63.3 13 0.00027 22.3 3.3 30 278-309 1-30 (31)
144 PF11698 V-ATPase_H_C: V-ATPas 63.2 6.5 0.00014 32.1 2.5 65 72-136 44-112 (119)
145 KOG2611|consensus 62.6 67 0.0015 32.7 9.8 117 59-179 44-178 (698)
146 COG1413 FOG: HEAT repeat [Ener 62.4 1.4E+02 0.003 28.1 12.4 29 71-99 74-102 (335)
147 KOG1788|consensus 60.1 55 0.0012 36.6 9.1 240 72-332 467-731 (2799)
148 PF08216 CTNNBL: Catenin-beta- 58.4 11 0.00025 30.1 3.1 41 255-297 65-105 (108)
149 PF13764 E3_UbLigase_R4: E3 ub 57.2 2.9E+02 0.0063 30.1 19.3 56 67-122 113-173 (802)
150 KOG1517|consensus 56.0 1E+02 0.0023 34.3 10.5 117 21-137 541-669 (1387)
151 PF07814 WAPL: Wings apart-lik 55.7 48 0.001 32.2 7.6 89 73-161 23-116 (361)
152 COG5209 RCD1 Uncharacterized p 54.6 75 0.0016 29.2 7.9 149 41-191 56-228 (315)
153 KOG0301|consensus 54.4 1.3E+02 0.0028 31.8 10.5 128 70-204 588-727 (745)
154 PF12460 MMS19_C: RNAPII trans 53.5 2.3E+02 0.005 27.9 21.1 90 73-163 1-102 (415)
155 PF06025 DUF913: Domain of Unk 52.9 1.7E+02 0.0036 28.8 10.9 76 256-332 129-207 (379)
156 KOG2137|consensus 52.5 57 0.0012 34.4 7.8 149 51-205 368-520 (700)
157 KOG4151|consensus 52.5 69 0.0015 34.2 8.4 121 49-170 561-688 (748)
158 PF12717 Cnd1: non-SMC mitotic 51.1 1.6E+02 0.0034 25.3 10.2 87 84-179 1-90 (178)
159 COG5096 Vesicle coat complex, 50.9 3.5E+02 0.0076 29.2 14.9 85 48-140 110-196 (757)
160 PF06371 Drf_GBD: Diaphanous G 50.0 34 0.00073 29.3 5.1 72 67-138 103-186 (187)
161 cd03567 VHS_GGA VHS domain fam 49.8 31 0.00067 28.9 4.6 68 71-138 38-115 (139)
162 PF04499 SAPS: SIT4 phosphatas 49.6 75 0.0016 32.3 8.1 66 111-179 20-90 (475)
163 KOG1062|consensus 49.6 3.7E+02 0.0081 29.1 16.6 100 49-161 126-229 (866)
164 KOG1078|consensus 49.3 3E+02 0.0066 29.7 12.4 63 75-141 249-313 (865)
165 KOG2259|consensus 48.3 97 0.0021 32.7 8.5 147 62-223 364-515 (823)
166 KOG0301|consensus 48.0 1.6E+02 0.0034 31.2 10.0 161 86-290 559-729 (745)
167 COG1413 FOG: HEAT repeat [Ener 45.0 71 0.0015 30.1 6.9 80 71-170 43-124 (335)
168 KOG2073|consensus 44.5 3.1E+02 0.0066 30.0 11.9 168 104-292 182-380 (838)
169 cd03561 VHS VHS domain family; 44.0 55 0.0012 26.8 5.2 69 71-139 37-112 (133)
170 cd03568 VHS_STAM VHS domain fa 43.0 49 0.0011 27.8 4.8 68 71-138 37-109 (144)
171 COG5215 KAP95 Karyopherin (imp 43.0 4.2E+02 0.0092 27.9 14.0 226 79-310 141-439 (858)
172 COG5181 HSH155 U2 snRNP splice 42.9 2.2E+02 0.0049 30.0 10.1 150 69-224 686-875 (975)
173 KOG2274|consensus 42.7 5E+02 0.011 28.6 18.1 138 71-211 530-677 (1005)
174 COG5181 HSH155 U2 snRNP splice 42.1 3.5E+02 0.0076 28.7 11.3 53 277-334 688-743 (975)
175 KOG1241|consensus 41.2 4.9E+02 0.011 28.1 13.8 108 194-307 90-202 (859)
176 KOG1832|consensus 41.2 1.4E+02 0.0031 32.8 8.6 91 52-143 331-425 (1516)
177 cd03569 VHS_Hrs_Vps27p VHS dom 40.0 50 0.0011 27.6 4.4 70 70-139 40-114 (142)
178 KOG1240|consensus 38.7 3.7E+02 0.0081 30.7 11.5 183 114-305 424-627 (1431)
179 TIGR02270 conserved hypothetic 38.7 1.8E+02 0.0038 29.0 8.7 27 72-98 179-205 (410)
180 PF11707 Npa1: Ribosome 60S bi 36.5 2.6E+02 0.0057 26.6 9.3 99 50-150 138-248 (330)
181 PF08324 PUL: PUL domain; Int 36.4 43 0.00094 30.6 3.8 102 49-150 129-242 (268)
182 PF12719 Cnd3: Nuclear condens 36.2 3.6E+02 0.0079 25.1 13.4 67 71-141 26-95 (298)
183 PF14225 MOR2-PAG1_C: Cell mor 35.4 3.7E+02 0.008 25.0 15.6 85 78-162 14-122 (262)
184 smart00288 VHS Domain present 34.8 78 0.0017 26.0 4.7 69 71-139 37-111 (133)
185 PF14225 MOR2-PAG1_C: Cell mor 34.3 36 0.00078 31.7 2.9 62 72-135 189-250 (262)
186 COG5096 Vesicle coat complex, 34.2 1.4E+02 0.003 32.2 7.4 102 72-184 93-196 (757)
187 PF14663 RasGEF_N_2: Rapamycin 33.7 76 0.0017 25.4 4.4 40 72-111 9-48 (115)
188 KOG3665|consensus 32.0 6.4E+02 0.014 27.0 12.0 174 94-287 494-677 (699)
189 PF08389 Xpo1: Exportin 1-like 31.7 70 0.0015 25.8 4.0 62 72-134 83-148 (148)
190 PF04821 TIMELESS: Timeless pr 31.6 2.1E+02 0.0046 26.5 7.6 172 69-250 11-218 (266)
191 KOG2137|consensus 30.8 3.1E+02 0.0067 29.2 9.1 51 278-329 465-516 (700)
192 PF14726 RTTN_N: Rotatin, an a 30.2 1.4E+02 0.003 23.4 5.1 53 69-121 28-80 (98)
193 KOG1991|consensus 29.9 8.1E+02 0.018 27.3 12.4 129 70-203 409-553 (1010)
194 PF12460 MMS19_C: RNAPII trans 29.9 3.7E+02 0.0081 26.4 9.5 121 112-236 271-409 (415)
195 PLN03205 ATR interacting prote 29.5 1.2E+02 0.0027 30.1 5.6 116 74-190 326-455 (652)
196 KOG1058|consensus 29.3 5.9E+02 0.013 27.6 10.8 35 153-188 245-279 (948)
197 PF06012 DUF908: Domain of Unk 28.7 3.3E+02 0.0071 26.0 8.5 56 92-163 220-277 (329)
198 PF07539 DRIM: Down-regulated 27.6 47 0.001 27.8 2.2 37 64-100 10-46 (141)
199 COG5098 Chromosome condensatio 25.8 2.5E+02 0.0054 30.1 7.3 100 46-149 278-389 (1128)
200 PF14666 RICTOR_M: Rapamycin-i 25.3 2.9E+02 0.0063 25.0 7.1 47 256-303 143-189 (226)
201 PF11865 DUF3385: Domain of un 24.8 4.3E+02 0.0093 22.4 9.8 100 73-179 12-114 (160)
202 KOG1992|consensus 24.4 5.5E+02 0.012 28.1 9.6 146 152-307 499-670 (960)
203 KOG1832|consensus 24.0 1.1E+02 0.0024 33.5 4.6 62 63-124 731-799 (1516)
204 PF12726 SEN1_N: SEN1 N termin 22.7 6.5E+02 0.014 26.9 10.3 117 75-201 445-567 (727)
205 PF12463 DUF3689: Protein of u 22.3 2.1E+02 0.0045 27.3 5.7 59 274-332 92-153 (303)
206 KOG1059|consensus 22.3 1E+03 0.022 25.8 17.6 210 74-313 147-370 (877)
207 KOG0211|consensus 22.2 4.7E+02 0.01 28.4 8.8 221 73-313 84-331 (759)
208 COG5215 KAP95 Karyopherin (imp 22.1 9.5E+02 0.021 25.4 11.9 92 72-163 598-692 (858)
209 PF05918 API5: Apoptosis inhib 20.6 1.8E+02 0.0038 30.2 5.2 71 45-125 37-109 (556)
210 PF12783 Sec7_N: Guanine nucle 20.5 1.5E+02 0.0032 25.0 4.1 76 65-142 67-149 (168)
211 KOG1242|consensus 20.4 9.9E+02 0.021 24.9 15.7 57 255-311 273-330 (569)
212 PF06012 DUF908: Domain of Unk 20.3 3.7E+02 0.008 25.6 7.1 56 86-141 237-299 (329)
No 1
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=100.00 E-value=6.6e-61 Score=489.62 Aligned_cols=309 Identities=45% Similarity=0.723 Sum_probs=296.9
Q ss_pred ccccccccc---hhhhcccCCcceeecccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHH
Q psy12638 18 TYPTRNAGV---KAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKL 94 (334)
Q Consensus 18 ~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~ 94 (334)
+-.|+|+++ .+..|+|.+.+++++. ++||+|||++.+||..|.+.|+||+|++++++++.++++.|+++
T Consensus 283 e~kM~~~~iV~~Lv~~Ldr~n~ellil~--------v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrl 354 (708)
T PF05804_consen 283 ELKMVNKGIVSLLVKCLDRENEELLILA--------VTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRL 354 (708)
T ss_pred HHHHHhcCCHHHHHHHHcCCCHHHHHHH--------HHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 346888888 7888899999988874 89999999999999999999999999999999999999999999
Q ss_pred HHhhcCChhHHHHHHhcCChHHHHHhccCCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHH
Q psy12638 95 LFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174 (334)
Q Consensus 95 L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ 174 (334)
|+|||||+++|.+|++.|+||+|+++|+++..+.+|+++|||||.++++|.+|++|+|+|.+++++.++++++++.++++
T Consensus 355 L~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~elia 434 (708)
T PF05804_consen 355 LFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIA 434 (708)
T ss_pred HHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888888889999
Q ss_pred HHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhh-hhhhHHHHHHHhhcCCccchhHHhhcH
Q psy12638 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHY-FVDYIGDIANCVQKEKDENIKLECLGT 253 (334)
Q Consensus 175 ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~-f~~~i~~L~~~l~~~~~~~~~ve~Lg~ 253 (334)
+++|||.+++|++.|+++||++.|++++++++||+++|++||+|+|+++.+. |.+++++|++++++++++++.+||+|+
T Consensus 435 L~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGi 514 (708)
T PF05804_consen 435 LLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGI 514 (708)
T ss_pred HHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999965544 999999999999999899999999999
Q ss_pred H--------------------------------------HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchH
Q psy12638 254 L--------------------------------------EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEI 295 (334)
Q Consensus 254 l--------------------------------------eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~ 295 (334)
+ |+|+++|++|.+++|+.++++.|+++.|+++|+++++|||+
T Consensus 515 LaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~ 594 (708)
T PF05804_consen 515 LANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEI 594 (708)
T ss_pred HHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHH
Confidence 8 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 296 VLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 296 vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
|+|++|+||+|++|+++|+.++.++++|+||++||||+|
T Consensus 595 VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N 633 (708)
T PF05804_consen 595 VLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKN 633 (708)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999998
No 2
>KOG1222|consensus
Probab=100.00 E-value=6.6e-62 Score=463.14 Aligned_cols=310 Identities=43% Similarity=0.697 Sum_probs=301.0
Q ss_pred cccccccccc---hhhhcccCCcceeecccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHH
Q psy12638 17 DTYPTRNAGV---KAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLK 93 (334)
Q Consensus 17 ~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~ 93 (334)
-|--||++.+ .+..|+|+|++++.++ ++||+|||++.|||..|.+.|+|++|++++++.++++++.+++
T Consensus 296 ~ElKMrrkniV~mLVKaLdr~n~~Ll~lv--------~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~ 367 (791)
T KOG1222|consen 296 VELKMRRKNIVAMLVKALDRSNSSLLTLV--------IKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLM 367 (791)
T ss_pred HHHHHHHHhHHHHHHHHHcccchHHHHHH--------HHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHH
Confidence 4567999988 7788899999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChhHHHHHHhcCChHHHHHhccCCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHH
Q psy12638 94 LLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLV 173 (334)
Q Consensus 94 ~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~ 173 (334)
+|+|||||..+|.+||..|.+|+++.+|+++.....|+.+||++|+|++.|.+|++|+||+.+++.+.++.++++..+++
T Consensus 368 LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~li 447 (791)
T KOG1222|consen 368 LLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALI 447 (791)
T ss_pred HhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhh-hhhhHHHHHHHhhcCCccchhHHhhc
Q psy12638 174 ALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHY-FVDYIGDIANCVQKEKDENIKLECLG 252 (334)
Q Consensus 174 ~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~-f~~~i~~L~~~l~~~~~~~~~ve~Lg 252 (334)
++|+||+.+.+|++.|++++|+..|++++++.+|++++|++||+|+|+...|. |.+|+++|+.++++++.+++.+||+|
T Consensus 448 a~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClG 527 (791)
T KOG1222|consen 448 ALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLG 527 (791)
T ss_pred HHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997777 99999999999999998999999999
Q ss_pred HH--------------------------------------HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCch
Q psy12638 253 TL--------------------------------------EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDE 294 (334)
Q Consensus 253 ~l--------------------------------------eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde 294 (334)
++ +.|+++||+|.+..|+.+++..|+|+.|++||+++|+|||
T Consensus 528 tlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDE 607 (791)
T KOG1222|consen 528 TLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDE 607 (791)
T ss_pred HHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccch
Confidence 98 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 295 IVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 295 ~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
+|+|++|+|+++++|..+|+.+.++++.++||||||||||
T Consensus 608 fV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN 647 (791)
T KOG1222|consen 608 FVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKN 647 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhccc
Confidence 9999999999999999999999999999999999999998
No 3
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=100.00 E-value=5.6e-33 Score=284.55 Aligned_cols=290 Identities=17% Similarity=0.249 Sum_probs=249.8
Q ss_pred cccCCcceeecccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHh
Q psy12638 31 FDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK 110 (334)
Q Consensus 31 ~~r~~~~~~~~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~ 110 (334)
++|++..++.+| ++|.+||.+..++.+|.+.|+|+.|+++|++++.+++..++++|.+||++.+||..|.+
T Consensus 259 ~~kQeqLlrv~~---------~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~ 329 (708)
T PF05804_consen 259 IRKQEQLLRVAF---------YLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE 329 (708)
T ss_pred HHHHHHHHHHHH---------HHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 346667777665 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHH
Q psy12638 111 IGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAEL 188 (334)
Q Consensus 111 ~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~ 188 (334)
.|+||+|++++. +++.+..++.+|+|||+|++.|..|.+.|+||+|+.+|.+. ..+.-++++++|||.+++++..
T Consensus 330 ~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~ 406 (708)
T PF05804_consen 330 SGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSM 406 (708)
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHH
Confidence 999999999996 44689999999999999999999999999999999999742 3334467999999999999999
Q ss_pred HHhcCchHHHHHHHhcCChH----HHHHHHHHHhcCCCchhhh-----------------hhhHHHHHHHhhcCC--ccc
Q psy12638 189 MLKNRQLELLMIQAFTQKNI----LLLKVIRNMSIHSNVKHYF-----------------VDYIGDIANCVQKEK--DEN 245 (334)
Q Consensus 189 i~~~~gl~~Lv~~l~~~~d~----~~~k~l~nLa~~~~~~~~f-----------------~~~i~~L~~~l~~~~--~~~ 245 (334)
+.+.+++|.+++.+.++.++ .++.++.|+|.+..+.+.+ ++.+.++++.++.++ .+.
T Consensus 407 f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~ 486 (708)
T PF05804_consen 407 FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKE 486 (708)
T ss_pred HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHH
Confidence 99999999999999886543 3688999999998877663 245566777777665 234
Q ss_pred hhHHhhcHH-----------HHHHHHHHhcC----CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCc
Q psy12638 246 IKLECLGTL-----------EVINFIGTAAS----DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHA 310 (334)
Q Consensus 246 ~~ve~Lg~l-----------eav~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~ 310 (334)
.+++.++-+ ..+.++|++++ +.+|.+.+.+.+++|||.++|.++..+||++++++.++|+++.++
T Consensus 487 ~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 487 LFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 445555543 35778888877 457999999999999999999999999999999999999999988
Q ss_pred hhhHHHhhcCCcHHHHHHhhhcC
Q psy12638 311 SCQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 311 ~~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
.++..+.+ ++++..|++||+++
T Consensus 567 ~~A~lL~~-sgli~~Li~LL~~k 588 (708)
T PF05804_consen 567 ECAPLLAK-SGLIPTLIELLNAK 588 (708)
T ss_pred HHHHHHHh-CChHHHHHHHHHhh
Confidence 89976665 78888999999986
No 4
>KOG1222|consensus
Probab=99.96 E-value=5.4e-28 Score=231.49 Aligned_cols=280 Identities=18% Similarity=0.260 Sum_probs=248.4
Q ss_pred HHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc--cCCchH
Q psy12638 50 GRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL--EEGKHQ 127 (334)
Q Consensus 50 A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL--~~~~~~ 127 (334)
|+++|.+|+.+-.-..+|...++|..||+-|..++.++.-.++++|..||...+||..|++.|+|++|++++ .+|+++
T Consensus 283 a~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~ 362 (791)
T KOG1222|consen 283 AVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLR 362 (791)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHH
Confidence 469999999998899999999999999999999999999999999999999999999999999999999999 478899
Q ss_pred HHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCCh
Q psy12638 128 KIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKN 207 (334)
Q Consensus 128 ~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d 207 (334)
...+.+|+|||+|...|..+...|-+|.|+.++.+..... .++.++|.+|.|++-..++++.++++.+++.++++.+
T Consensus 363 ~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~---iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~ 439 (791)
T KOG1222|consen 363 KATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHG---IALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTG 439 (791)
T ss_pred HHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccch---hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999997643333 3568899999999999999999999999999998764
Q ss_pred H----HHHHHHHHHhcCCCchhhh-----------------hhhHHHHHHHhhcCCc--cchhHHhhcHH---------H
Q psy12638 208 I----LLLKVIRNMSIHSNVKHYF-----------------VDYIGDIANCVQKEKD--ENIKLECLGTL---------E 255 (334)
Q Consensus 208 ~----~~~k~l~nLa~~~~~~~~f-----------------~~~i~~L~~~l~~~~~--~~~~ve~Lg~l---------e 255 (334)
. .++.++.|+|-+..+.|.+ +..+.++++.++++++ +..++..+|.+ |
T Consensus 440 ~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E 519 (791)
T KOG1222|consen 440 SEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSE 519 (791)
T ss_pred ceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchH
Confidence 3 4577789999998777652 3567888888888775 56778888877 2
Q ss_pred --HHHHHHHhcC----CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHh
Q psy12638 256 --VINFIGTAAS----DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDL 329 (334)
Q Consensus 256 --av~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~L 329 (334)
.+.++|++|+ |.+|++.+.++.+|||+.+.|+++.+.||+++|++.++|+++++..|+. ++...++++.||+|
T Consensus 520 ~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~-Lla~a~~i~tlieL 598 (791)
T KOG1222|consen 520 SFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCAR-LLAPAKLIDTLIEL 598 (791)
T ss_pred HHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHH-HhCccccHHHHHHH
Confidence 5789999988 6789999999999999999999999999999999999999999999886 55556788899999
Q ss_pred hhcC
Q psy12638 330 LNDG 333 (334)
Q Consensus 330 L~d~ 333 (334)
|+.+
T Consensus 599 L~a~ 602 (791)
T KOG1222|consen 599 LQAC 602 (791)
T ss_pred HHhh
Confidence 9864
No 5
>KOG4224|consensus
Probab=99.95 E-value=2.6e-26 Score=213.90 Aligned_cols=278 Identities=18% Similarity=0.244 Sum_probs=237.6
Q ss_pred hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CC
Q psy12638 47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EG 124 (334)
Q Consensus 47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~ 124 (334)
|..|+.++-+|+.+.+||.++...|+++++.+|-++++..++.+++.+|.||.+..++|..+|.+|++|.||.+++ ++
T Consensus 143 qcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~ 222 (550)
T KOG4224|consen 143 QCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL 222 (550)
T ss_pred EeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh
Confidence 4478899999999999999999999999999999999999999999999999999999999999999999999995 66
Q ss_pred chHHHHHHHHHHccCChhhhhHhhccC--cHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHH
Q psy12638 125 KHQKIILQLLYHLSIEDRVKAMFAYTN--CMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQA 202 (334)
Q Consensus 125 ~~~~~al~~L~~LS~~~~~r~~i~~t~--~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l 202 (334)
+.|.+|...+.+++.|..+|..+++++ .+|.|++++.++ ++.++..+.-.+-||+.+.+.+-.|++.|++|.+++++
T Consensus 223 dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Ll 301 (550)
T KOG4224|consen 223 DVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELL 301 (550)
T ss_pred hHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHH
Confidence 789999999999999999999999998 899999999864 44443333345569999999999999999999999999
Q ss_pred hcCChHHH---HHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhC
Q psy12638 203 FTQKNILL---LKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKN 276 (334)
Q Consensus 203 ~~~~d~~~---~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~ 276 (334)
.+.--|.+ +.|+||+|.|+.+...+ .|++.+|++++.-+++++..+.+..++ -.+|. ...+...+.+.
T Consensus 302 qs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL------rnLAasse~n~~~i~es 375 (550)
T KOG4224|consen 302 QSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL------RNLAASSEHNVSVIRES 375 (550)
T ss_pred hCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH------HHHhhhhhhhhHHHhhc
Confidence 77665654 66899999999988774 589999999998888877766655444 66665 55677899999
Q ss_pred CchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 277 STVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
|.||.++.|+..+.- ++.-.+--||.+++-++..+..+.. .++...||.+.-|.|
T Consensus 376 gAi~kl~eL~lD~pv--svqseisac~a~Lal~d~~k~~lld-~gi~~iLIp~t~s~s 430 (550)
T KOG4224|consen 376 GAIPKLIELLLDGPV--SVQSEISACIAQLALNDNDKEALLD-SGIIPILIPWTGSES 430 (550)
T ss_pred CchHHHHHHHhcCCh--hHHHHHHHHHHHHHhccccHHHHhh-cCCcceeecccCccc
Confidence 999999999986542 5777788899999999999988776 566668888876653
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.90 E-value=8.9e-22 Score=217.66 Aligned_cols=286 Identities=13% Similarity=0.134 Sum_probs=217.9
Q ss_pred CcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh---hHHHH-HHhcCChHHHHH
Q psy12638 44 PKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT---NLREK-IIKIGFLPKLVS 119 (334)
Q Consensus 44 ~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~---~~r~~-iv~~g~Ip~Lv~ 119 (334)
+..|..|++.|.+||.+++||..+...|+||+|+++|++++.+.++.|+++|++||.++ ++|.. +++.|+||+|++
T Consensus 72 ~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~ 151 (2102)
T PLN03200 72 LGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWD 151 (2102)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999974 45644 568999999999
Q ss_pred hccCCc-----hHHHHHHHHHHccCChhhhh-HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHHHhc
Q psy12638 120 LLEEGK-----HQKIILQLLYHLSIEDRVKA-MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELMLKN 192 (334)
Q Consensus 120 lL~~~~-----~~~~al~~L~~LS~~~~~r~-~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i~~~ 192 (334)
+++++. .++.++.+|+|||.+.+++. .+.+.|++|.|+++|.+ +++..+.+++.++.+++ .+++.++.+.+.
T Consensus 152 lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS-~d~~lQ~eAa~aLa~Lass~ee~~~aVIea 230 (2102)
T PLN03200 152 QLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS-GNSDAQANAASLLARLMMAFESSISKVLDA 230 (2102)
T ss_pred HHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence 997653 45667899999999988875 56899999999999986 56676667766666665 457789999999
Q ss_pred CchHHHHHHHhcCChHH----HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCc--------c---chhH------
Q psy12638 193 RQLELLMIQAFTQKNIL----LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKD--------E---NIKL------ 248 (334)
Q Consensus 193 ~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~--------~---~~~v------ 248 (334)
|++|+|++++.+++++. +..+++|+|.+++..+. . .|+++.|++.+..... + +..+
T Consensus 231 GaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNI 310 (2102)
T PLN03200 231 GAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANI 310 (2102)
T ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHH
Confidence 99999999987766642 46679999998654333 2 4788888877642110 0 0000
Q ss_pred -------------------------HhhcHH----------------------------------------HHHHHHHHh
Q psy12638 249 -------------------------ECLGTL----------------------------------------EVINFIGTA 263 (334)
Q Consensus 249 -------------------------e~Lg~l----------------------------------------eav~~lg~l 263 (334)
...|.+ .++.+++.+
T Consensus 311 cgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl 390 (2102)
T PLN03200 311 CGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL 390 (2102)
T ss_pred hCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh
Confidence 000101 012233333
Q ss_pred cCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhhcC
Q psy12638 264 ASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 264 a~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
..++..++.+.+.|+++.||+||. ..++|...+.+.++..++.+++ .++.+....++| .|+++|++.
T Consensus 391 ~gN~~l~~~L~~~daik~LV~LL~--~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp-~LV~LL~s~ 458 (2102)
T PLN03200 391 YGNAYLSRKLNHAEAKKVLVGLIT--MATADVQEELIRALSSLCCGKGGLWEALGGREGVQ-LLISLLGLS 458 (2102)
T ss_pred cCChHHHHHHHhccchhhhhhhhc--cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHH-HHHHHHcCC
Confidence 344445566777788999999997 4456899999999999997755 677777776766 999999864
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.89 E-value=1.2e-21 Score=216.66 Aligned_cols=287 Identities=14% Similarity=0.119 Sum_probs=229.0
Q ss_pred ceeecccCcchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCCh
Q psy12638 37 NCYGLIVPKSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFL 114 (334)
Q Consensus 37 ~~~~~~~~~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~I 114 (334)
.++-...++.|++|+..|..|+.. .+++..+.+.|+||+|+++|.+++...++.|+..|.|++. ++++|..|++.|+|
T Consensus 411 ~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI 490 (2102)
T PLN03200 411 GLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGI 490 (2102)
T ss_pred hhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 344455567888999999999965 7799999999999999999999999999999999999996 56899999999999
Q ss_pred HHHHHhccC--CchHHHHHHHHHHccCCh-hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchH-----
Q psy12638 115 PKLVSLLEE--GKHQKIILQLLYHLSIED-RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNA----- 186 (334)
Q Consensus 115 p~Lv~lL~~--~~~~~~al~~L~~LS~~~-~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~----- 186 (334)
|+|+++|++ +..++.|+.+|+|||.++ ..|..+.+.|+||+|+++|.++ +.+.+++++..+.||+.+.++.
T Consensus 491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~L 569 (2102)
T PLN03200 491 PPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQL 569 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 999999964 567888999999999876 4566677899999999999875 5677777778888885432211
Q ss_pred --------------------------------HH-HHhcCchHHHHHHHhcCChHH---HHHHHHHHhcCCCch-hh--h
Q psy12638 187 --------------------------------EL-MLKNRQLELLMIQAFTQKNIL---LLKVIRNMSIHSNVK-HY--F 227 (334)
Q Consensus 187 --------------------------------~~-i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~-~~--f 227 (334)
.. ....||++.|++++.++++.. +..++.|++...+.. +. .
T Consensus 570 v~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ 649 (2102)
T PLN03200 570 TALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT 649 (2102)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 01 113579999999998887654 455688888766543 22 4
Q ss_pred hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC--CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHH
Q psy12638 228 VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS--DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQ 305 (334)
Q Consensus 228 ~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~--~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~ 305 (334)
.+.+++|+.++..++. +... +++.+|+.+++ +.+.+..+++.|+||+|+++|+. .|++++-+++.++..
T Consensus 650 agaIpPLV~LLss~~~-~v~k------eAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~--~d~~v~e~Al~ALan 720 (2102)
T PLN03200 650 DEIINPCIKLLTNNTE-AVAT------QSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS--SSIEVAEQAVCALAN 720 (2102)
T ss_pred cCCHHHHHHHHhcCCh-HHHH------HHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC--CChHHHHHHHHHHHH
Confidence 6899999999876553 3222 46778888886 33344567899999999999974 567999999999999
Q ss_pred HHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 306 ICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 306 l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
++.+++.+..+..+++++ .|+++|++++
T Consensus 721 Ll~~~e~~~ei~~~~~I~-~Lv~lLr~G~ 748 (2102)
T PLN03200 721 LLSDPEVAAEALAEDIIL-PLTRVLREGT 748 (2102)
T ss_pred HHcCchHHHHHHhcCcHH-HHHHHHHhCC
Confidence 999999998888766655 9999999875
No 8
>KOG4224|consensus
Probab=99.85 E-value=1.4e-20 Score=175.81 Aligned_cols=275 Identities=16% Similarity=0.199 Sum_probs=231.1
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCch
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKH 126 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~ 126 (334)
-|-..+-++++..+||.-+++.+.+++|+.=..+++.++++++++++.||+..+++|..|...|++.++.++-+ +...
T Consensus 104 aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirv 183 (550)
T KOG4224|consen 104 AAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRV 183 (550)
T ss_pred hhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhH
Confidence 56677889999999999999999999999888889999999999999999999999999999999999999665 4456
Q ss_pred HHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcC--chHHHHHHHhc
Q psy12638 127 QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNR--QLELLMIQAFT 204 (334)
Q Consensus 127 ~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~--gl~~Lv~~l~~ 204 (334)
|.++..+|.++....++|..++..|++|.||.++.+ .+.+++.-+...+.|.+-+.+++...++.+ -++.||++.-+
T Consensus 184 qrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s-~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~ 262 (550)
T KOG4224|consen 184 QRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKS-GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD 262 (550)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhcc-CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC
Confidence 899999999999999999999999999999999986 566776656567789999999999999987 89999999888
Q ss_pred CChHHH---HHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCch
Q psy12638 205 QKNILL---LKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTV 279 (334)
Q Consensus 205 ~~d~~~---~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I 279 (334)
+++... -..+||+|.+..-...+ .+.++.+++++...-.... ++.|.++.+++-.|-+..++++.|+.
T Consensus 263 ~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~pli-------lasVaCIrnisihplNe~lI~dagfl 335 (550)
T KOG4224|consen 263 GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLI-------LASVACIRNISIHPLNEVLIADAGFL 335 (550)
T ss_pred CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHH-------HHHHHHHhhcccccCcccceecccch
Confidence 877753 34699999887655443 4788888888733221111 24578889999999988999999999
Q ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHcC-chhhHHHhhcCCcHHHHHHhhhcC
Q psy12638 280 DLLINLLKEMQEDDEIVLQILYVFYQICRH-ASCQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 280 ~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~-~~~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
.|||++|+. .+.+|+.+.++.++..++.. ..++..|...+.|| .|++|+.|.
T Consensus 336 ~pLVrlL~~-~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~-kl~eL~lD~ 388 (550)
T KOG4224|consen 336 RPLVRLLRA-GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIP-KLIELLLDG 388 (550)
T ss_pred hHHHHHHhc-CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchH-HHHHHHhcC
Confidence 999999995 55667999999999999963 44676676655555 999999886
No 9
>KOG0166|consensus
Probab=99.69 E-value=1.1e-15 Score=150.69 Aligned_cols=279 Identities=15% Similarity=0.151 Sum_probs=217.7
Q ss_pred CcchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhc
Q psy12638 44 PKSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLL 121 (334)
Q Consensus 44 ~~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL 121 (334)
|+.|-+|+.+|.+.+. ..++-....++|++|.+++++.+++.++++.|+-+|.|.+.| +..|...++.|++++|..++
T Consensus 124 ~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l 203 (514)
T KOG0166|consen 124 PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLL 203 (514)
T ss_pred hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHh
Confidence 3447799999999996 466777789999999999999999999999999999999999 58999999999999999999
Q ss_pred cCCc---hHHHHHHHHHHccCChhhhhHhhc-cCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHHHhcCchH
Q psy12638 122 EEGK---HQKIILQLLYHLSIEDRVKAMFAY-TNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELMLKNRQLE 196 (334)
Q Consensus 122 ~~~~---~~~~al~~L~~LS~~~~~r~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i~~~~gl~ 196 (334)
..+. ....++.+|.|||....--..|.. ..++|.|..++.+ +++++..++.-.+..|+ ...+..+++.+.|+.+
T Consensus 204 ~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~ 282 (514)
T KOG0166|consen 204 NKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVP 282 (514)
T ss_pred ccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchH
Confidence 6443 566788889999987654445444 3478899999975 67777777665566666 5567788888999999
Q ss_pred HHHHHHhcCChHH---HHHHHHHHhcCCCchhh---hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-Ccch
Q psy12638 197 LLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY---FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPIS 269 (334)
Q Consensus 197 ~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~---f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~ 269 (334)
.|++++.+....+ +++++.|++..++.... -.+.++-|..++++...+.... ||+..+++++. +.+-
T Consensus 283 ~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikk------EAcW~iSNItAG~~~q 356 (514)
T KOG0166|consen 283 RLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKK------EACWTISNITAGNQEQ 356 (514)
T ss_pred HHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHH------HHHHHHHHhhcCCHHH
Confidence 9999998876654 47888898888766543 2477888877776444222221 47788899877 5666
Q ss_pred HHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhh
Q psy12638 270 AEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLN 331 (334)
Q Consensus 270 ~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~ 331 (334)
.+.+.+.|++|+|+++|. +.|.++.-++++++..++.... .+-..+-+.+++++|.+||.
T Consensus 357 iqaVida~l~p~Li~~l~--~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~ 417 (514)
T KOG0166|consen 357 IQAVIDANLIPVLINLLQ--TAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT 417 (514)
T ss_pred HHHHHHcccHHHHHHHHh--ccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc
Confidence 778899999999999998 4557889999999999985544 22222334567779999984
No 10
>KOG1048|consensus
Probab=99.50 E-value=7.5e-13 Score=134.65 Aligned_cols=289 Identities=18% Similarity=0.208 Sum_probs=197.5
Q ss_pred cccCcchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh---hHHHHHHhcCChHH
Q psy12638 41 LIVPKSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT---NLREKIIKIGFLPK 116 (334)
Q Consensus 41 ~~~~~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~---~~r~~iv~~g~Ip~ 116 (334)
.-.+.-|..|..+++.++- +.+-|..+.+.|.|++|+.+|.+.+.+++..|..+|-||+|.. +++-+|.+.|+||.
T Consensus 244 ~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~ 323 (717)
T KOG1048|consen 244 SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPT 323 (717)
T ss_pred ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHH
Confidence 3344566799999999986 4557778889999999999999999999999999999999963 59999999999999
Q ss_pred HHHhcc---CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCC-------------CchHHHHHHHHHHHc
Q psy12638 117 LVSLLE---EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQD-------------DETDNVLVALCINLA 180 (334)
Q Consensus 117 Lv~lL~---~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~-------------~~~~~~~~~ll~nLs 180 (334)
++++|+ +.+.++....+|+|||..|..|..|.+ ++++.|.+-+..... .++-..+...+-|++
T Consensus 324 l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlS 402 (717)
T KOG1048|consen 324 LVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLS 402 (717)
T ss_pred HHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhcccc
Confidence 999995 678899999999999999888887765 466666665542111 122223445666885
Q ss_pred c-CcchHHHHHhc-CchHHHHHHHhcC------ChHH---HHHHHHHHhcCCCch------hhh--------hh------
Q psy12638 181 L-NSRNAELMLKN-RQLELLMIQAFTQ------KNIL---LLKVIRNMSIHSNVK------HYF--------VD------ 229 (334)
Q Consensus 181 ~-~~~n~~~i~~~-~gl~~Lv~~l~~~------~d~~---~~k~l~nLa~~~~~~------~~f--------~~------ 229 (334)
. ..+-+++|.+. |.+..|+....+. ++.. .+.++||++..-... +.. .+
T Consensus 403 s~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~ 482 (717)
T KOG1048|consen 403 SAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESV 482 (717)
T ss_pred chhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCccccc
Confidence 5 56678888865 6677887776531 2222 366788887653210 000 00
Q ss_pred --hHHHHHHHhhcC------------Cccc-----hhH-HhhcHH---------H-HHHHHHHhcC-Ccc-----hHHHh
Q psy12638 230 --YIGDIANCVQKE------------KDEN-----IKL-ECLGTL---------E-VINFIGTAAS-DPI-----SAEHF 273 (334)
Q Consensus 230 --~i~~L~~~l~~~------------~~~~-----~~v-e~Lg~l---------e-av~~lg~la~-~~~-----~~~~l 273 (334)
+..+.-+....+ ++-+ .++ ..+..+ | ++.+|-+++- ... ++..+
T Consensus 483 gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~ 562 (717)
T KOG1048|consen 483 GCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVF 562 (717)
T ss_pred ccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhh
Confidence 001111100000 0000 001 011111 3 3556666644 222 34455
Q ss_pred hhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 274 CKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 274 ~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
.++.+.|+|+++|+ .+|++++-.++.++..|+.+...++.|. ...++ .|++.|.+.+
T Consensus 563 ~kekgl~~l~~ll~--~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~-~lv~~Lp~~~ 619 (717)
T KOG1048|consen 563 RKEKGLPPLVELLR--NDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIP-DLVRCLPGSG 619 (717)
T ss_pred hhccCccHHHHHHh--cCCchHHHHHHHHHhhhccCchhhhhhh-cchHH-HHHHhCcCCC
Confidence 77878999999998 6788999999999999999999998776 44566 8999988753
No 11
>KOG0166|consensus
Probab=99.44 E-value=8.7e-12 Score=123.38 Aligned_cols=276 Identities=14% Similarity=0.153 Sum_probs=199.6
Q ss_pred HHHHHHHhc-ccchh-hHHHhHhCCcchHHHhhccC-CChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhccCC
Q psy12638 49 EGRQDSRKL-SVYHV-NKEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLEEG 124 (334)
Q Consensus 49 ~A~~~L~~L-Si~~e-nk~~m~~~g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~~~ 124 (334)
.|..++++| |.... .-+.....|+||.+|+.|.+ .++.++..|.-+|-|+|.-. +.-..+++.|++|.++.|+.+|
T Consensus 85 ~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~ 164 (514)
T KOG0166|consen 85 TATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP 164 (514)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC
Confidence 556666554 44322 34445556999999999975 45899999999999999864 6777778999999999999654
Q ss_pred --chHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHh-cCchHHHHH
Q psy12638 125 --KHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK-NRQLELLMI 200 (334)
Q Consensus 125 --~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~-~~gl~~Lv~ 200 (334)
..++.|+..|.|++-| +..|......|++++|+.++.....-.....+.=++.||+........+.. ...+|.|..
T Consensus 165 ~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ 244 (514)
T KOG0166|consen 165 SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR 244 (514)
T ss_pred cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 5799999999999988 688999999999999999997533212333344567898776654333332 246777776
Q ss_pred HHhcCChHHHHH---HHHHHhcCCCch-hhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHh
Q psy12638 201 QAFTQKNILLLK---VIRNMSIHSNVK-HYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHF 273 (334)
Q Consensus 201 ~l~~~~d~~~~k---~l~nLa~~~~~~-~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l 273 (334)
++.+.+..++.- .++.|+.+.... +.. .+.++.|+.++...+. ..... |..++|+++. ++.-.+.+
T Consensus 245 ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~-~v~~P------aLRaiGNIvtG~d~QTq~v 317 (514)
T KOG0166|consen 245 LLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP-KVVTP------ALRAIGNIVTGSDEQTQVV 317 (514)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc-ccccH------HHhhccceeeccHHHHHHH
Confidence 665544444433 466677665544 332 5888999998866552 33333 4577799887 44456688
Q ss_pred hhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhhcC
Q psy12638 274 CKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 274 ~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
...|++|.|-.++... ..+-+.-+++.++..++.++. ..+.++.. ++...|+.+|++.
T Consensus 318 i~~~~L~~l~~ll~~s-~~~~ikkEAcW~iSNItAG~~~qiqaVida-~l~p~Li~~l~~~ 376 (514)
T KOG0166|consen 318 INSGALPVLSNLLSSS-PKESIKKEACWTISNITAGNQEQIQAVIDA-NLIPVLINLLQTA 376 (514)
T ss_pred HhcChHHHHHHHhccC-cchhHHHHHHHHHHHhhcCCHHHHHHHHHc-ccHHHHHHHHhcc
Confidence 9999999999999832 223488889999999998877 66667764 6666999999864
No 12
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.41 E-value=6.9e-12 Score=115.65 Aligned_cols=172 Identities=17% Similarity=0.234 Sum_probs=145.8
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc-c-
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL-E- 122 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL-~- 122 (334)
.-++.|...+.+.+.++.|++-+.+.|+++.+..+++++++.++..|+.+|.|||.+.+++..|.. .|+.+.+.+ .
T Consensus 28 ~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~ 105 (254)
T PF04826_consen 28 FIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM--YIPQVCEETVSS 105 (254)
T ss_pred HHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH--HHHHHHHHHhcC
Confidence 456789999999999999999999999999999999999999999999999999999999998854 689888866 2
Q ss_pred --CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638 123 --EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI 200 (334)
Q Consensus 123 --~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~ 200 (334)
+...|..++++|.|||..++.+..++. ++|.++.+|.+| +...+..++.+++|||.++.+...+...+++..++.
T Consensus 106 ~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G-~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~ 182 (254)
T PF04826_consen 106 PLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSG-SEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLS 182 (254)
T ss_pred CCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcC-ChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHH
Confidence 335678899999999999999999965 899999999875 456666778999999999999999998899999997
Q ss_pred HHhcCCh-HHH---HHHHHHHhcCC
Q psy12638 201 QAFTQKN-ILL---LKVIRNMSIHS 221 (334)
Q Consensus 201 ~l~~~~d-~~~---~k~l~nLa~~~ 221 (334)
+..+..+ ..+ +.+..|+..+-
T Consensus 183 Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 183 LFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHccCCccHHHHHHHHHHHHHHHhh
Confidence 7655432 333 45566776653
No 13
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.34 E-value=6.7e-11 Score=109.11 Aligned_cols=195 Identities=17% Similarity=0.207 Sum_probs=149.2
Q ss_pred HhCCcchHHHhhccC-CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhh
Q psy12638 68 ANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVK 144 (334)
Q Consensus 68 ~~~g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r 144 (334)
.+.+-+++|+.+|++ .++..++.++.++.|.+.++.++..|.+.|+||.+..+|.+| ..+..|+..|.|+|.+.+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 556778899999985 678999999999999999999999999999999999999654 57888999999999999999
Q ss_pred hHhhccCcHHHHHHHhccCC-CCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCc
Q psy12638 145 AMFAYTNCMSLLMNMLLVEQ-DDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNV 223 (334)
Q Consensus 145 ~~i~~t~~i~~Lv~LL~~~~-~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~ 223 (334)
.+|.. .++.+.+...+.+ +..++...+.++.||+..+.....+.. +++.++.++.+|+...
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~-------------- 150 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKT-------------- 150 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHH--------------
Confidence 99853 7888888766543 567776677889999888877777653 6777666655443322
Q ss_pred hhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHH
Q psy12638 224 KHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVF 303 (334)
Q Consensus 224 ~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l 303 (334)
.+ .+..++..+|.+|+....+....+.+.++.|+.. .++.|+.+.++..|
T Consensus 151 -----------------------k~------~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~ 200 (254)
T PF04826_consen 151 -----------------------KV------QVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS-SESKENLLRVLTFF 200 (254)
T ss_pred -----------------------HH------HHHHHHHHhccCHHHHHHHHhccchhHHHHHHcc-CCccHHHHHHHHHH
Confidence 11 1334556666777765555555667888888873 55667788788888
Q ss_pred HHHHcCc
Q psy12638 304 YQICRHA 310 (334)
Q Consensus 304 ~~l~~~~ 310 (334)
..+..|=
T Consensus 201 ~ni~~~~ 207 (254)
T PF04826_consen 201 ENINENI 207 (254)
T ss_pred HHHHHhh
Confidence 8886443
No 14
>KOG2122|consensus
Probab=99.34 E-value=5.3e-11 Score=126.48 Aligned_cols=284 Identities=18% Similarity=0.216 Sum_probs=207.2
Q ss_pred CcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhc-------------------------------------------
Q psy12638 44 PKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRIL------------------------------------------- 80 (334)
Q Consensus 44 ~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL------------------------------------------- 80 (334)
+..+++-.+-+.-+|..++.+..|...|-++.|++++
T Consensus 208 t~D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQ 287 (2195)
T KOG2122|consen 208 TDDEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQ 287 (2195)
T ss_pred cCCHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHH
Confidence 3455554444455666678888888888888877744
Q ss_pred --------------------cCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc-C---------C----ch
Q psy12638 81 --------------------MIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE-E---------G----KH 126 (334)
Q Consensus 81 --------------------~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~-~---------~----~~ 126 (334)
+..+....+.|+..|..+|||.|.|..|-+.|++..+-+||. + + .+
T Consensus 288 IraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aL 367 (2195)
T KOG2122|consen 288 IRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNAL 367 (2195)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 112335567899999999999999999999999999999883 1 1 14
Q ss_pred HHHHHHHHHHccCC-hhhhhHh-hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc-h-HHHHHhcCchHHHHHHH
Q psy12638 127 QKIILQLLYHLSIE-DRVKAMF-AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR-N-AELMLKNRQLELLMIQA 202 (334)
Q Consensus 127 ~~~al~~L~~LS~~-~~~r~~i-~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~-n-~~~i~~~~gl~~Lv~~l 202 (334)
+.++.-.|-||.+- .-||..+ ++-||+..+|..|.+. .+++.+..+.++-||+.... | +..+.+.|-+..|+...
T Consensus 368 RrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~a 446 (2195)
T KOG2122|consen 368 RRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACA 446 (2195)
T ss_pred HHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHH
Confidence 88999999999985 4677777 5568999999999864 45776767789999987643 4 55555778899999988
Q ss_pred hcCChH----HHHHHHHHHhcCCCchhh-h---hhhHHHHHHHhhcCCccch--hHHhh-cHHHHHHHH-HHhcCCcchH
Q psy12638 203 FTQKNI----LLLKVIRNMSIHSNVKHY-F---VDYIGDIANCVQKEKDENI--KLECL-GTLEVINFI-GTAASDPISA 270 (334)
Q Consensus 203 ~~~~d~----~~~k~l~nLa~~~~~~~~-f---~~~i~~L~~~l~~~~~~~~--~ve~L-g~leav~~l-g~la~~~~~~ 270 (334)
..+.-. -++-.+||||-|....+. | ++++.-|+.+|+....... +||-- |+| .-+ .-+|...+++
T Consensus 447 l~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGIL---RNVSS~IAt~E~yR 523 (2195)
T KOG2122|consen 447 LRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGIL---RNVSSLIATCEDYR 523 (2195)
T ss_pred HHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHH---HHHHhHhhccchHH
Confidence 765432 246679999999876555 5 6899999998875532222 23322 222 222 2245578899
Q ss_pred HHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHH-cCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 271 EHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQIC-RHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 271 ~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~-~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
+++.+++.+..|.+.|++++ --+|--.+.+++.|. +++..++.+.....++ .|..|+|+||
T Consensus 524 QILR~~NCLq~LLQ~LKS~S--LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~-mLrnLIhSKh 585 (2195)
T KOG2122|consen 524 QILRRHNCLQTLLQHLKSHS--LTIVSNACGTLWNLSARSPEDQQMLWDDGAVP-MLRNLIHSKH 585 (2195)
T ss_pred HHHHHhhHHHHHHHHhhhcc--eEEeecchhhhhhhhcCCHHHHHHHHhcccHH-HHHHHHhhhh
Confidence 99999999999999998654 236666688888887 4555777666655555 9999999986
No 15
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.32 E-value=5.2e-11 Score=111.34 Aligned_cols=269 Identities=14% Similarity=0.142 Sum_probs=193.1
Q ss_pred HHHHHHHhcccchhhHHHh-HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhccCC--
Q psy12638 49 EGRQDSRKLSVYHVNKEQM-ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLEEG-- 124 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m-~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~~~-- 124 (334)
+|+.+|.+.+....+..+. +++|++|.+++||.+++.++++.++=+|.|.+-|. ..|.-+...|++.++..++.+.
T Consensus 134 EAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~ 213 (526)
T COG5064 134 EAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI 213 (526)
T ss_pred HHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc
Confidence 8999999999877766664 68999999999999999999999999999999995 7888888999999999999532
Q ss_pred --chHHHHHHHHHHccCCh---hhhhHhhccCcHHHHHHHhccCCCCchHHHH-HHHHHHHccCc-chHHHHHhcCchHH
Q psy12638 125 --KHQKIILQLLYHLSIED---RVKAMFAYTNCMSLLMNMLLVEQDDETDNVL-VALCINLALNS-RNAELMLKNRQLEL 197 (334)
Q Consensus 125 --~~~~~al~~L~~LS~~~---~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~-~~ll~nLs~~~-~n~~~i~~~~gl~~ 197 (334)
.....+..+|.||+.-. ..-..|. .++|.|.+|+.+- ++++-.++ .++-| |+-.+ +..+.+.+.|.-+.
T Consensus 214 ~ismlRn~TWtLSNlcRGknP~P~w~~is--qalpiL~KLiys~-D~evlvDA~WAiSY-lsDg~~E~i~avld~g~~~R 289 (526)
T COG5064 214 HISMLRNATWTLSNLCRGKNPPPDWSNIS--QALPILAKLIYSR-DPEVLVDACWAISY-LSDGPNEKIQAVLDVGIPGR 289 (526)
T ss_pred hHHHHHHhHHHHHHhhCCCCCCCchHHHH--HHHHHHHHHHhhc-CHHHHHHHHHHHHH-hccCcHHHHHHHHhcCCcHH
Confidence 23556888899998642 2233342 3899999999864 44443333 23333 43333 55777888888889
Q ss_pred HHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchH
Q psy12638 198 LMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISA 270 (334)
Q Consensus 198 Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~ 270 (334)
|++++.+.+..+ +++.+.|+-..++.... + .|++..+..++++.+ +..-- |++..++++.. +.+-.
T Consensus 290 LvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irK------EaCWTiSNITAGnteqi 362 (526)
T COG5064 290 LVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRK------EACWTISNITAGNTEQI 362 (526)
T ss_pred HHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-hhhhh------hhheeecccccCCHHHH
Confidence 999877633322 47777787766554433 2 466666666665544 22222 35566677744 66667
Q ss_pred HHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHH----HhhcCCcHHHHHHhhh
Q psy12638 271 EHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNY----LIKETDAPAYMIDLLN 331 (334)
Q Consensus 271 ~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~----i~~~~~i~~~Li~LL~ 331 (334)
+.+.+.++||+|+.+|. ..|-.+.-+++.++.....+...+.. ++ +.|.+++|.++|.
T Consensus 363 qavid~nliPpLi~lls--~ae~k~kKEACWAisNatsgg~~~PD~iryLv-~qG~IkpLc~~L~ 424 (526)
T COG5064 363 QAVIDANLIPPLIHLLS--SAEYKIKKEACWAISNATSGGLNRPDIIRYLV-SQGFIKPLCDLLD 424 (526)
T ss_pred HHHHhcccchHHHHHHH--HHHHHHHHHHHHHHHhhhccccCCchHHHHHH-HccchhHHHHHHh
Confidence 78899999999999997 45556777889999988866554443 34 4577778888874
No 16
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.18 E-value=2.8e-10 Score=91.28 Aligned_cols=114 Identities=24% Similarity=0.237 Sum_probs=99.4
Q ss_pred HhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCCh-
Q psy12638 66 QMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIED- 141 (334)
Q Consensus 66 ~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~~- 141 (334)
.+.+.|+++.+++++.+++..++..|+.+|.|++.+ ++.+..+++.|++|.+++++++ +..+..|+.+|++|+.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999999999999999999999998 7999999999999999999964 567899999999999886
Q ss_pred hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc
Q psy12638 142 RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA 180 (334)
Q Consensus 142 ~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs 180 (334)
+.+..+.+.|.++.|++++.. .+..+.+.+..++.||+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhh
Confidence 567777888999999999975 45566666667777764
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.16 E-value=5.6e-09 Score=105.66 Aligned_cols=281 Identities=15% Similarity=0.195 Sum_probs=205.8
Q ss_pred cchhHHHHHHHhcccchhh-HHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC
Q psy12638 45 KSKREGRQDSRKLSVYHVN-KEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE 123 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~en-k~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~ 123 (334)
.-|+.|+..+.++....+. ...+.+.++++.++..+.+++..+.+.|..+|.+|+.++..-..+...+.++.|..++..
T Consensus 92 ~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~ 171 (503)
T PF10508_consen 92 KVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ 171 (503)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc
Confidence 4455677778887765554 344566899999999999999999999999999999998888889999999999999954
Q ss_pred --CchHHHHHHHHHHcc-CChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638 124 --GKHQKIILQLLYHLS-IEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI 200 (334)
Q Consensus 124 --~~~~~~al~~L~~LS-~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~ 200 (334)
+..|..+..++.+++ ..++.......+|.++.+++.+.+ ++.-++..++.++..|+..+.+.+.+.+.|.++.|.+
T Consensus 172 ~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~ 250 (503)
T PF10508_consen 172 SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSN 250 (503)
T ss_pred cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHH
Confidence 557888888999996 457888888889999999999975 5555666788899999999999999999999999999
Q ss_pred HHhcC-ChH-----H---HHHHHHHHhcCCCch--hhhhhhHHHHHHHhhcCCc--cchhHHhhcHH-------------
Q psy12638 201 QAFTQ-KNI-----L---LLKVIRNMSIHSNVK--HYFVDYIGDIANCVQKEKD--ENIKLECLGTL------------- 254 (334)
Q Consensus 201 ~l~~~-~d~-----~---~~k~l~nLa~~~~~~--~~f~~~i~~L~~~l~~~~~--~~~~ve~Lg~l------------- 254 (334)
.+.+. .|| . .++...+++...+.. ..|..++..+.+++...+. ....++.+|.+
T Consensus 251 ~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~ 330 (503)
T PF10508_consen 251 LLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQK 330 (503)
T ss_pred HHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhh
Confidence 98754 344 1 377888999874332 2256666666666544432 12334555544
Q ss_pred -------------------------HHHHHHHHh--cCCc-c-------hHHHhhhCCc--hH-HHHHHhccccCCchHH
Q psy12638 255 -------------------------EVINFIGTA--ASDP-I-------SAEHFCKNST--VD-LLINLLKEMQEDDEIV 296 (334)
Q Consensus 255 -------------------------eav~~lg~l--a~~~-~-------~~~~l~~~g~--I~-~Lv~LL~~~~~dde~v 296 (334)
.+.-+++.+ ...+ + ...++...|- .. .+.++++ |.-.|+-
T Consensus 331 ~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~--qPF~elr 408 (503)
T PF10508_consen 331 QGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLK--QPFPELR 408 (503)
T ss_pred cchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchHHH
Confidence 234445555 2211 1 1112222221 12 4555554 4346899
Q ss_pred HHHHHHHHHHHcCchhhHHHhhcCCcHHHHHH
Q psy12638 297 LQILYVFYQICRHASCQNYLIKETDAPAYMID 328 (334)
Q Consensus 297 lqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~ 328 (334)
+.+..++..++.|+-+.+.+....|++.||++
T Consensus 409 ~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 409 CAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 99999999999999988888888888877764
No 18
>KOG2122|consensus
Probab=99.11 E-value=1.2e-09 Score=116.52 Aligned_cols=255 Identities=16% Similarity=0.194 Sum_probs=188.4
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCC------------ChhHHHHHHHHHHhhcCC-hhHHHHHH-hcCCh
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIE------------DSNLQSSTLKLLFNLSFD-TNLREKII-KIGFL 114 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~------------~~~l~~~al~~L~NLS~d-~~~r~~iv-~~g~I 114 (334)
.|+..|.|+|.+.|+|..|-+.|++..+..|+.-+ +..++..|.++|-||.|- ..||..+- ..|++
T Consensus 317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 68889999999999999999999999999988432 236899999999999995 46777666 58999
Q ss_pred HHHHHhcc-CC-chHHHHHHHHHHccC--ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH-ccCcchHHHH
Q psy12638 115 PKLVSLLE-EG-KHQKIILQLLYHLSI--EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL-ALNSRNAELM 189 (334)
Q Consensus 115 p~Lv~lL~-~~-~~~~~al~~L~~LS~--~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL-s~~~~n~~~i 189 (334)
..+|..|. .| ++.++.+.+|-|||= |-..|..+.++|-+-.|+.--.....+.--+.++..|+|| +++.+|+..|
T Consensus 397 eavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i 476 (2195)
T KOG2122|consen 397 EAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI 476 (2195)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence 99999884 44 788899999999996 4567899999999999887765444433336677889999 6788999999
Q ss_pred Hhc-CchHHHHHHHh-cCChHHH------HHHHHHHhcCC----Cchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHH
Q psy12638 190 LKN-RQLELLMIQAF-TQKNILL------LKVIRNMSIHS----NVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLE 255 (334)
Q Consensus 190 ~~~-~gl~~Lv~~l~-~~~d~~~------~k~l~nLa~~~----~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~le 255 (334)
|.- |++.-||..+. +++...+ -.++||+|.+= +.+|.. --++..|+..|+.+.- -++-+..
T Consensus 477 CaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SL-TiVSNaC---- 551 (2195)
T KOG2122|consen 477 CAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSL-TIVSNAC---- 551 (2195)
T ss_pred hcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcce-EEeecch----
Confidence 974 78888888874 4333322 22688877763 334432 2567777777765441 1111222
Q ss_pred HHHHHHHh-cCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchh
Q psy12638 256 VINFIGTA-ASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC 312 (334)
Q Consensus 256 av~~lg~l-a~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~ 312 (334)
..|-++ |+++.-++.+-+.|.|+.|-+|+.++.- .+..--+.++..++.+.+.
T Consensus 552 --GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhk--MIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 552 --GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHK--MIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred --hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhh--hhhhhHHHHHHHHhcCCch
Confidence 222444 4477778899999999999999998764 2333347788888877743
No 19
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.09 E-value=1.4e-09 Score=101.84 Aligned_cols=269 Identities=15% Similarity=0.173 Sum_probs=189.2
Q ss_pred HHHHhcccchh-hHHHhHhCCcchHHHhhc-cCCChhHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhccCC--ch
Q psy12638 52 QDSRKLSVYHV-NKEQMANLNLIEKLPRIL-MIEDSNLQSSTLKLLFNLSFDTNLREKII-KIGFLPKLVSLLEEG--KH 126 (334)
Q Consensus 52 ~~L~~LSi~~e-nk~~m~~~g~I~~Lv~LL-~~~~~~l~~~al~~L~NLS~d~~~r~~iv-~~g~Ip~Lv~lL~~~--~~ 126 (334)
.|=+-||.... --....++|++|.+++++ ..++.-++-.|.=+|-|.|.-.....++| +.|++|.++.+|.++ +.
T Consensus 94 kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V 173 (526)
T COG5064 94 KFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDV 173 (526)
T ss_pred HHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHH
Confidence 44455665433 445678999999999999 55555678889999999999876666555 899999999999644 57
Q ss_pred HHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCC--CchHHHHHHHHHHHcc--CcchHHHHHhcCchHHHHHH
Q psy12638 127 QKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQD--DETDNVLVALCINLAL--NSRNAELMLKNRQLELLMIQ 201 (334)
Q Consensus 127 ~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~--~~~~~~~~~ll~nLs~--~~~n~~~i~~~~gl~~Lv~~ 201 (334)
++.++..|.|++-| +..|..+-++|+++++..++.++.. +-+. .+.=.+.||.. +|.--..-+. ..+|.|.++
T Consensus 174 ~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR-n~TWtLSNlcRGknP~P~w~~is-qalpiL~KL 251 (526)
T COG5064 174 REQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR-NATWTLSNLCRGKNPPPDWSNIS-QALPILAKL 251 (526)
T ss_pred HHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH-HhHHHHHHhhCCCCCCCchHHHH-HHHHHHHHH
Confidence 88999999999987 5789999999999999999985332 1121 12234567743 3332222222 368888887
Q ss_pred HhcCChHHHHHHHHHHhcCCCchhh----h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhh
Q psy12638 202 AFTQKNILLLKVIRNMSIHSNVKHY----F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFC 274 (334)
Q Consensus 202 l~~~~d~~~~k~l~nLa~~~~~~~~----f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~ 274 (334)
+.+-+..++...++.+|.-.+..+. . .+.-+.|+.++++.+ ...... +...+|++.. ++.--+.+.
T Consensus 252 iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s-a~iqtP------alR~vGNIVTG~D~QTqviI 324 (526)
T COG5064 252 IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES-AKIQTP------ALRSVGNIVTGSDDQTQVII 324 (526)
T ss_pred HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc-ccccCH------HHHhhcCeeecCccceehhe
Confidence 7766666677777777765544332 1 466777888876543 122222 4566788866 333345788
Q ss_pred hCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhhc
Q psy12638 275 KNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLND 332 (334)
Q Consensus 275 ~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~d 332 (334)
..|+.+.+-.+|.++.+ .+--+++.++..+...+. ..+.++...=|| +||+||..
T Consensus 325 ~~G~L~a~~~lLs~~ke--~irKEaCWTiSNITAGnteqiqavid~nliP-pLi~lls~ 380 (526)
T COG5064 325 NCGALKAFRSLLSSPKE--NIRKEACWTISNITAGNTEQIQAVIDANLIP-PLIHLLSS 380 (526)
T ss_pred ecccHHHHHHHhcChhh--hhhhhhheeecccccCCHHHHHHHHhcccch-HHHHHHHH
Confidence 99999999999987665 788888999888875554 555667655555 99999864
No 20
>KOG1048|consensus
Probab=99.09 E-value=1e-09 Score=111.99 Aligned_cols=167 Identities=23% Similarity=0.338 Sum_probs=138.1
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCC---hhhhh
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIE---DRVKA 145 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~---~~~r~ 145 (334)
-+|.-+.+|.+.++.++-+|...+--++| |.+.|.++.+.|+||+||.+|. .++.+..|+..|-||+.. +++|.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 45667889999999999999999999999 5799999999999999999996 457788899999999774 46899
Q ss_pred HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCCh-------H------H---
Q psy12638 146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKN-------I------L--- 209 (334)
Q Consensus 146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d-------~------~--- 209 (334)
.|.+.++||.++++|....+.++.+.+..++.||+.++..+..|++. ++..|-+.++.... + .
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence 99999999999999997778888888889999999998888888875 88888887764211 1 1
Q ss_pred -HHHHHHHHhcCC-Cchhhh---hhhHHHHHHHhh
Q psy12638 210 -LLKVIRNMSIHS-NVKHYF---VDYIGDIANCVQ 239 (334)
Q Consensus 210 -~~k~l~nLa~~~-~~~~~f---~~~i~~L~~~l~ 239 (334)
+..|+||++... ..++.+ .|.|+.|+..+.
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq 427 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQ 427 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHH
Confidence 255899999854 445554 577888887664
No 21
>KOG4199|consensus
Probab=99.05 E-value=3.2e-08 Score=92.78 Aligned_cols=263 Identities=13% Similarity=0.188 Sum_probs=192.9
Q ss_pred HhcccchhhHHHhHhCCcchHHHhhcc--CCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhc-cCCc---hH
Q psy12638 55 RKLSVYHVNKEQMANLNLIEKLPRILM--IEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL-EEGK---HQ 127 (334)
Q Consensus 55 ~~LSi~~enk~~m~~~g~I~~Lv~LL~--~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL-~~~~---~~ 127 (334)
.-++...+-...+.+..+...++++|. .+++++...+++.+-.=+. +.-||..+++.++.|.+..-| +.+. .|
T Consensus 129 ~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VR 208 (461)
T KOG4199|consen 129 EAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVR 208 (461)
T ss_pred HHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHH
Confidence 333334445556667777777888774 4567888888888888776 468999999999999999666 3322 35
Q ss_pred HHHHHHHHHccCChhhhhHhh----------ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHH
Q psy12638 128 KIILQLLYHLSIEDRVKAMFA----------YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLEL 197 (334)
Q Consensus 128 ~~al~~L~~LS~~~~~r~~i~----------~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~ 197 (334)
+... .+.-|-.||+.|..|+ +.|+...|++.+.-+-+++.-.++...+--|+-..+-++.|.+.||+..
T Consensus 209 el~~-a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~t 287 (461)
T KOG4199|consen 209 ELYD-AIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDT 287 (461)
T ss_pred HHHH-HHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 5444 3666777887886554 4566778999998777777655555556677888899999999999999
Q ss_pred HHHHHhcCChHH-------HHHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-Cc
Q psy12638 198 LMIQAFTQKNIL-------LLKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DP 267 (334)
Q Consensus 198 Lv~~l~~~~d~~-------~~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~ 267 (334)
|++.+-.+++.. .++++|.+|.+++.+..+ .++.++++.++..+...+.+++. +..+++.++. .|
T Consensus 288 l~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~-----~~a~i~~l~LR~p 362 (461)
T KOG4199|consen 288 LLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQE-----VMAIISILCLRSP 362 (461)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHH-----HHHHHHHHHhcCc
Confidence 999988755542 367899999999988875 47888888888777766666654 5566677776 78
Q ss_pred chHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcH
Q psy12638 268 ISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAP 323 (334)
Q Consensus 268 ~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~ 323 (334)
+....+.+.|+-...++-++.+----.+.-+.+.++..|..+......++-..|+-
T Consensus 363 dhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE 418 (461)
T KOG4199|consen 363 DHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIE 418 (461)
T ss_pred chHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHH
Confidence 88889999999899999998654444567777999999887766333343334554
No 22
>KOG4500|consensus
Probab=99.04 E-value=1.2e-08 Score=98.11 Aligned_cols=282 Identities=12% Similarity=0.108 Sum_probs=179.2
Q ss_pred hHHHHHHHhcccchhhHHHh----HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhcc
Q psy12638 48 REGRQDSRKLSVYHVNKEQM----ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 48 ~~A~~~L~~LSi~~enk~~m----~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
.++++++.+-|+.+--|... ..+|++++|.+...|++.++...+.|+|.|.+.|+ ++|..+-+.|+=..+++.|+
T Consensus 60 ~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~ 139 (604)
T KOG4500|consen 60 LFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLK 139 (604)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhc
Confidence 36677777777665555554 34688999999999999999999999999999985 99999999999666666663
Q ss_pred ------CC---chHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCC-CCchHHHHHHHHHHH-ccCcchHHHHH
Q psy12638 123 ------EG---KHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQ-DDETDNVLVALCINL-ALNSRNAELML 190 (334)
Q Consensus 123 ------~~---~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~-~~~~~~~~~~ll~nL-s~~~~n~~~i~ 190 (334)
+| ++...+.++|.|-+.+ ++.|....+.|.++.|+.++.-+- +...++...+-..|| ++-.++...+.
T Consensus 140 ~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~ 219 (604)
T KOG4500|consen 140 PYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFC 219 (604)
T ss_pred cccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhh
Confidence 22 3456678888888876 688999999999999998886322 222323333333344 33333322222
Q ss_pred h-cCchHHHHHHHh----cCChHHHHHHHHHHhcCCCchhhh----------------------------hhhHHHHHHH
Q psy12638 191 K-NRQLELLMIQAF----TQKNILLLKVIRNMSIHSNVKHYF----------------------------VDYIGDIANC 237 (334)
Q Consensus 191 ~-~~gl~~Lv~~l~----~~~d~~~~k~l~nLa~~~~~~~~f----------------------------~~~i~~L~~~ 237 (334)
. ..-.-.+++++- .+-++..+.++.-.+.++.-+-.| .+.+.+++.+
T Consensus 220 ~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vl 299 (604)
T KOG4500|consen 220 KDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVL 299 (604)
T ss_pred ccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhh
Confidence 1 111112222221 122334444444444443222111 2333344444
Q ss_pred hhcCCc--------cchhHHhhcHH---------HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcc-ccCCchHHHHH
Q psy12638 238 VQKEKD--------ENIKLECLGTL---------EVINFIGTAASDPISAEHFCKNSTVDLLINLLKE-MQEDDEIVLQI 299 (334)
Q Consensus 238 l~~~~~--------~~~~ve~Lg~l---------eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~-~~~dde~vlqi 299 (334)
+..++. ..++....+++ .++.++|++|+.++....+++.|.+..|++.|.. +-+|+++-.|.
T Consensus 300 lltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qh 379 (604)
T KOG4500|consen 300 LLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQH 379 (604)
T ss_pred hhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHH
Confidence 444331 11222222322 5788999999988888899999999999999864 66777777776
Q ss_pred --HHHHHHHHcCchhhHHHhhcCCcHHHHHHhh
Q psy12638 300 --LYVFYQICRHASCQNYLIKETDAPAYMIDLL 330 (334)
Q Consensus 300 --~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL 330 (334)
+.++..+.--.+++.++++ .|++..++-.+
T Consensus 380 A~lsALRnl~IPv~nka~~~~-aGvteaIL~~l 411 (604)
T KOG4500|consen 380 ACLSALRNLMIPVSNKAHFAP-AGVTEAILLQL 411 (604)
T ss_pred HHHHHHHhccccCCchhhccc-cchHHHHHHHH
Confidence 7788888766667766655 45555544333
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.96 E-value=9.8e-08 Score=96.64 Aligned_cols=243 Identities=17% Similarity=0.191 Sum_probs=177.8
Q ss_pred hCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhH-HHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccCChhhhh
Q psy12638 69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNL-REKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIEDRVKA 145 (334)
Q Consensus 69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~-r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~~~r~ 145 (334)
..++.+.|.+.|.++++.++..+++.|.+++.+++. ...+.+.+++|.++.++++++ ....|+.+|.+|+..+....
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 667888999999999999999999999999988755 455567999999999997664 57889999999999888888
Q ss_pred HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHHHhcCchHHHHHHHhcCChHHH----HHHHHHHhcC
Q psy12638 146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELMLKNRQLELLMIQAFTQKNILL----LKVIRNMSIH 220 (334)
Q Consensus 146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~----~k~l~nLa~~ 220 (334)
.+...+.++.|.+++.+ +++.++..+..++++++ .+++..+.+...|.++.+++.+.+ +|.++ +.++..+|..
T Consensus 155 ~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAET 232 (503)
T ss_pred HHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcC
Confidence 88888889999999975 35566667778888885 556667777777888888887655 66543 6679999996
Q ss_pred CCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhcc--ccCCchH
Q psy12638 221 SNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKE--MQEDDEI 295 (334)
Q Consensus 221 ~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~--~~~dde~ 295 (334)
+.+.+.+ .+.+++|..++...+.+...-. +-....+...|.++. +|. ..+. ..|.+++.+.. .+.|...
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~-~~l~g~~~f~g~la~~~~~--~v~~---~~p~~~~~l~~~~~s~d~~~ 306 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSS-LLLPGRMKFFGNLARVSPQ--EVLE---LYPAFLERLFSMLESQDPTI 306 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccc-hhhhhHHHHHHHHHhcChH--HHHH---HHHHHHHHHHHHhCCCChhH
Confidence 6665542 4788888888866553330111 111134577788888 443 2222 34666655542 2455556
Q ss_pred HHHHHHHHHHHHcCchhhHHH-hhc
Q psy12638 296 VLQILYVFYQICRHASCQNYL-IKE 319 (334)
Q Consensus 296 vlqi~~~l~~l~~~~~~~~~i-~~~ 319 (334)
..-++-++|.++...+.++.+ ...
T Consensus 307 ~~~A~dtlg~igst~~G~~~L~~~~ 331 (503)
T PF10508_consen 307 REVAFDTLGQIGSTVEGKQLLLQKQ 331 (503)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 665677999999888888777 443
No 24
>KOG4199|consensus
Probab=98.91 E-value=1.3e-07 Score=88.73 Aligned_cols=271 Identities=13% Similarity=0.215 Sum_probs=185.0
Q ss_pred HHHHHHHhcccchhhHHHh------HhCCcchHHHh---hccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHH
Q psy12638 49 EGRQDSRKLSVYHVNKEQM------ANLNLIEKLPR---ILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVS 119 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m------~~~g~I~~Lv~---LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~ 119 (334)
+.+..|++|+. +.|... .+.|.-+.++- +-.+++..+...++.+|-.|. ...+.+.+..+...+++
T Consensus 78 E~s~ll~~l~d--~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt---~~qpdl~da~g~~vvv~ 152 (461)
T KOG4199|consen 78 ETTELLEQLAD--ECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLT---HKQPDLFDAEAMAVVLK 152 (461)
T ss_pred HHHHHHHHHHH--HHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh---cCCcchhccccHHHHHH
Confidence 66778888873 444433 44677776554 445667777777766666555 45556677888899999
Q ss_pred hcc----CCchHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc----------
Q psy12638 120 LLE----EGKHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR---------- 184 (334)
Q Consensus 120 lL~----~~~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~---------- 184 (334)
+|. +.+.....+..+-+-+. ++-+|.-|.+++..|.+..-|......++..++-..+.-|.+|+.
T Consensus 153 lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~ 232 (461)
T KOG4199|consen 153 LLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHG 232 (461)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhH
Confidence 994 33444555555555554 689999999999999988666533333344444444444555543
Q ss_pred hHHHHHhcCchHHHHHHHhcCChHH----HHHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCcc---chhHHhhcHHH
Q psy12638 185 NAELMLKNRQLELLMIQAFTQKNIL----LLKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDE---NIKLECLGTLE 255 (334)
Q Consensus 185 n~~~i~~~~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~---~~~ve~Lg~le 255 (334)
.+..|+++||+..|++.+.-+.||- +.-.+..+|..+.--+.+ .|++..|++.+..+..+ ...-+|++.
T Consensus 233 hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lsl-- 310 (461)
T KOG4199|consen 233 HARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSL-- 310 (461)
T ss_pred HHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHH--
Confidence 3778888899999999998887773 234577777766554443 47888899988765432 233445444
Q ss_pred HHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHH-cCchhhHHHhhcCCcHHHHHHhhh
Q psy12638 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQIC-RHASCQNYLIKETDAPAYMIDLLN 331 (334)
Q Consensus 256 av~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~-~~~~~~~~i~~~~~i~~~Li~LL~ 331 (334)
+..+|-+++....+++.|+.|.++.++-.+++|+-++-|++.++..+| +-++....+++ .|+....++-|+
T Consensus 311 ----LralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmk 382 (461)
T KOG4199|consen 311 ----LRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMK 382 (461)
T ss_pred ----HHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHH
Confidence 488888888899999999999999999888887777777777777777 44443334554 566656677665
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.76 E-value=3.6e-08 Score=78.91 Aligned_cols=95 Identities=25% Similarity=0.267 Sum_probs=86.1
Q ss_pred CcchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhc
Q psy12638 44 PKSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLL 121 (334)
Q Consensus 44 ~~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL 121 (334)
++.|+.|+..|.+++.. ++++..+.+.|++|.+++++.++++.++..|+.+|.||+.++ +.+..+++.|++|.|++++
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l 100 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL 100 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHH
Confidence 46677899999999987 889999999999999999999999999999999999999986 7788889999999999999
Q ss_pred cCC--chHHHHHHHHHHcc
Q psy12638 122 EEG--KHQKIILQLLYHLS 138 (334)
Q Consensus 122 ~~~--~~~~~al~~L~~LS 138 (334)
+++ ..++.++.+|.+|+
T Consensus 101 ~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 101 DSSNEDIQKNATGALSNLA 119 (120)
T ss_pred hcCCHHHHHHHHHHHHHhh
Confidence 654 56888999999886
No 26
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.76 E-value=3e-07 Score=90.53 Aligned_cols=266 Identities=15% Similarity=0.134 Sum_probs=169.6
Q ss_pred HHHHHHHhcccchhhHHH-hHhCCcchHHHhhccCC-ChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC-C-
Q psy12638 49 EGRQDSRKLSVYHVNKEQ-MANLNLIEKLPRILMIE-DSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE-G- 124 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~-m~~~g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~-~- 124 (334)
.|.++|.++......+.. -...-..+.|...+.++ +.+.+..|+.+|.+|-..++.|..+.+.++++.|+++|+. .
T Consensus 120 ~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~ 199 (429)
T cd00256 120 MSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATL 199 (429)
T ss_pred HHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccc
Confidence 456666666543221111 00001333555666654 4788999999999999999999999999999999999953 2
Q ss_pred --chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc-------chHHHHHhcCch
Q psy12638 125 --KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS-------RNAELMLKNRQL 195 (334)
Q Consensus 125 --~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~-------~n~~~i~~~~gl 195 (334)
..+..++-.++-||.+++.-..+.+.+.||.|++++...+-+.+-.-+++++.||...+ .....|++. |+
T Consensus 200 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l 278 (429)
T cd00256 200 GFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KV 278 (429)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-Ch
Confidence 45667888899999999888888888999999999987665555555667788996532 234556654 67
Q ss_pred HHHHHHHhcC--ChHHHHHHHHHHhcCCCc----hhhhhhhHHHHHHHhhc----CCccchhHHhhcHHHHHHHHHHhcC
Q psy12638 196 ELLMIQAFTQ--KNILLLKVIRNMSIHSNV----KHYFVDYIGDIANCVQK----EKDENIKLECLGTLEVINFIGTAAS 265 (334)
Q Consensus 196 ~~Lv~~l~~~--~d~~~~k~l~nLa~~~~~----~~~f~~~i~~L~~~l~~----~~~~~~~ve~Lg~leav~~lg~la~ 265 (334)
+++++.+... .|+.+..-+..+...=.. ...|.+|...+-.=-.+ +..+.|=-|-. ..+ .
T Consensus 279 ~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~---------~kf-~ 348 (429)
T cd00256 279 LKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENA---------DRL-N 348 (429)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHH---------HHH-H
Confidence 7777776643 466554443333322111 11155555544321111 11223322221 111 1
Q ss_pred CcchHHHhhhCCchHHHHHHhccccCCchHHHHH-HHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 266 DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQI-LYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 266 ~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi-~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
+.++ .++..|+++|.. +. |..+++| ++=+|.+++|-|....++.+-++-..+++||.++|
T Consensus 349 ~~~~-------~llk~L~~iL~~-s~-d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d 409 (429)
T cd00256 349 EKNY-------ELLKILIHLLET-SV-DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED 409 (429)
T ss_pred hcch-------HHHHHHHHHHhc-CC-CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC
Confidence 2222 267899999953 33 4444444 88899999887755577777888878889998875
No 27
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.57 E-value=3.6e-07 Score=86.98 Aligned_cols=155 Identities=21% Similarity=0.156 Sum_probs=117.8
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccC----CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc---
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMI----EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL--- 121 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~----~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL--- 121 (334)
.|+++|..+......+..-...++++.++.++.+ ++.+++..|+.+|.+|...++.|..+.+.|+++.+.+++
T Consensus 124 ~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~ 203 (312)
T PF03224_consen 124 KAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQ 203 (312)
T ss_dssp HHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhh
Confidence 6778888887776655555446778888888765 555788999999999999999999999999999999999
Q ss_pred ---cCC---chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc--hHHHHHhcC
Q psy12638 122 ---EEG---KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR--NAELMLKNR 193 (334)
Q Consensus 122 ---~~~---~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~--n~~~i~~~~ 193 (334)
++. ..+..++-.++.||++++....+...+.||.|++++....-+.+-.-+++.+.||..... +...|+..
T Consensus 204 ~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~- 282 (312)
T PF03224_consen 204 ATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC- 282 (312)
T ss_dssp -------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-
T ss_pred cccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc-
Confidence 222 346778889999999999999999999999999999976666665556678889977766 88889886
Q ss_pred chHHHHHHHhc
Q psy12638 194 QLELLMIQAFT 204 (334)
Q Consensus 194 gl~~Lv~~l~~ 204 (334)
++.+.++.+.+
T Consensus 283 ~~l~~l~~L~~ 293 (312)
T PF03224_consen 283 GLLKTLQNLSE 293 (312)
T ss_dssp -HHHHHHHHHS
T ss_pred cHHHHHHHHhc
Confidence 44555555543
No 28
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.46 E-value=1.9e-06 Score=81.98 Aligned_cols=187 Identities=19% Similarity=0.150 Sum_probs=126.1
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC------CchHHHHHHHHHHccCChhhhh
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE------GKHQKIILQLLYHLSIEDRVKA 145 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~------~~~~~~al~~L~~LS~~~~~r~ 145 (334)
...++++++.++|..++..|..+|.+|......+..-...+.++.+...+++ .+.+..|+..|.+|...++.|.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 6788999999999999999999999998876555555447788999988853 2346889999999999999999
Q ss_pred HhhccCcHHHHHHHh------ccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhc
Q psy12638 146 MFAYTNCMSLLMNML------LVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSI 219 (334)
Q Consensus 146 ~i~~t~~i~~Lv~LL------~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~ 219 (334)
.|.+.++++.|++++ .+..+.++.-+++-.+..||++++.++.+.+.+-++.|++.+....
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~------------- 252 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI------------- 252 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---------------
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc-------------
Confidence 999999999999999 3434445555665666789999999999998776666665544321
Q ss_pred CCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcc--hHHHhhhCCchHHHHHHhccccCCchHHH
Q psy12638 220 HSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPI--SAEHFCKNSTVDLLINLLKEMQEDDEIVL 297 (334)
Q Consensus 220 ~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~--~~~~l~~~g~I~~Lv~LL~~~~~dde~vl 297 (334)
.++. +-. ++..+-++...+. +...++..|++|.+..|...+-.|+|+.-
T Consensus 253 -----------------------KEKv-vRv-----~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 253 -----------------------KEKV-VRV-----SLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp -----------------------SHHH-HHH-----HHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred -----------------------cchH-HHH-----HHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence 1111 111 2223344444322 67778888876666666666678888875
Q ss_pred HHH
Q psy12638 298 QIL 300 (334)
Q Consensus 298 qi~ 300 (334)
-+-
T Consensus 304 dl~ 306 (312)
T PF03224_consen 304 DLE 306 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 29
>KOG0946|consensus
Probab=98.43 E-value=2e-05 Score=80.97 Aligned_cols=273 Identities=15% Similarity=0.156 Sum_probs=190.4
Q ss_pred ccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccC--CChhHHHHHHHHHHhhcCChh-------HH-------
Q psy12638 42 IVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMI--EDSNLQSSTLKLLFNLSFDTN-------LR------- 105 (334)
Q Consensus 42 ~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~--~~~~l~~~al~~L~NLS~d~~-------~r------- 105 (334)
-.++.||+|++.|+-+|- .+|...+..| +++|++-|.. .|++....++..++|+-.+++ .+
T Consensus 35 TL~eDRR~A~rgLKa~sr--kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~ 111 (970)
T KOG0946|consen 35 TLLEDRRDAVRGLKAFSR--KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGL 111 (970)
T ss_pred cchhhHHHHHHHHHHHHH--HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHH
Confidence 345889999999998864 4777666655 7899999966 478999999999999987653 11
Q ss_pred ---HHH-HhcCChHHHHHhccCC--chHHHHHHHHHHc-cC-ChhhhhHhhc-cCcHHHHHHHhccCCCCchHHHHHHHH
Q psy12638 106 ---EKI-IKIGFLPKLVSLLEEG--KHQKIILQLLYHL-SI-EDRVKAMFAY-TNCMSLLMNMLLVEQDDETDNVLVALC 176 (334)
Q Consensus 106 ---~~i-v~~g~Ip~Lv~lL~~~--~~~~~al~~L~~L-S~-~~~~r~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll 176 (334)
+.+ ...+.|..|+..+... ..|.+++.++-.| |. -.+.+..+-. .-||..||++|.. ..+.++.+++-++
T Consensus 112 ~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL 190 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLL 190 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHH
Confidence 233 3578888888888644 4588899988887 33 2466666654 4599999999974 6677778887777
Q ss_pred HHHccCcchHHH-HHhcCchHHHHHHHhc-C-ChH-----HHHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccc
Q psy12638 177 INLALNSRNAEL-MLKNRQLELLMIQAFT-Q-KNI-----LLLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDEN 245 (334)
Q Consensus 177 ~nLs~~~~n~~~-i~~~~gl~~Lv~~l~~-~-~d~-----~~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~ 245 (334)
.-|+.+..+.+. ++-++.|..|++.+-+ | .|. -.+.++-||=.++...|. | .++|++|.++++.-...+
T Consensus 191 ~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d 270 (970)
T KOG0946|consen 191 SELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGD 270 (970)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccC
Confidence 778777666555 5567899999998764 3 233 136678888888877777 5 579999998876532111
Q ss_pred hhHHhhcHH-----------HHHHHHHHhcC----CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCc
Q psy12638 246 IKLECLGTL-----------EVINFIGTAAS----DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHA 310 (334)
Q Consensus 246 ~~ve~Lg~l-----------eav~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~ 310 (334)
- |..||- .+|..+-.-.+ -.+|.+.+.+.+++..|..++-..--.-|+....+.++..+.+.+
T Consensus 271 ~--Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 271 G--EVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN 348 (970)
T ss_pred c--ccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence 0 122211 23333322222 233667888999999999998754356678888888888888777
Q ss_pred hhhHHHhhcC
Q psy12638 311 SCQNYLIKET 320 (334)
Q Consensus 311 ~~~~~i~~~~ 320 (334)
...+.-+...
T Consensus 349 ~~nQ~~F~~v 358 (970)
T KOG0946|consen 349 ARNQDEFADV 358 (970)
T ss_pred hHHHHHHhhc
Confidence 7555444433
No 30
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.29 E-value=9.2e-05 Score=73.11 Aligned_cols=240 Identities=13% Similarity=0.140 Sum_probs=155.3
Q ss_pred CcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCC--ChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc
Q psy12638 44 PKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIE--DSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL 121 (334)
Q Consensus 44 ~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~--~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL 121 (334)
+..+.-|+..|..|-..++.|....+.+.+++|+.+|+.. +.+++..++-+++-|||+++....+.+.|.||.|+.++
T Consensus 158 ~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~ 237 (429)
T cd00256 158 NDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDIL 237 (429)
T ss_pred cchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHH
Confidence 3445577889988888899999999999999999999763 45899999999999999999888999999999999999
Q ss_pred cC---CchHHHHHHHHHHccCCh-------hhhhHhhccCcHHHHHHHhccCCCC--chHHHHHHHHHHHccCcchHHHH
Q psy12638 122 EE---GKHQKIILQLLYHLSIED-------RVKAMFAYTNCMSLLMNMLLVEQDD--ETDNVLVALCINLALNSRNAELM 189 (334)
Q Consensus 122 ~~---~~~~~~al~~L~~LS~~~-------~~r~~i~~t~~i~~Lv~LL~~~~~~--~~~~~~~~ll~nLs~~~~n~~~i 189 (334)
+. +..-..++++|.||.... .....+... +++++++.|...... ++..+.-.+--.| .+.+
T Consensus 238 k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l~~~l~~L~~rk~~DedL~edl~~L~e~L------~~~~ 310 (429)
T cd00256 238 KESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KVLKTLQSLEQRKYDDEDLTDDLKFLTEEL------KNSV 310 (429)
T ss_pred HhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-ChHHHHHHHhcCCCCcHHHHHHHHHHHHHH------HHHH
Confidence 63 356788999999997642 122233322 566677777654433 3322221111111 1111
Q ss_pred HhcCchHHHHHHHhcCChHHHHHHHHHHhcCCC-c---------hhhh----hhhHHHHHHHhhcCCccchhHHhhcHHH
Q psy12638 190 LKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-V---------KHYF----VDYIGDIANCVQKEKDENIKLECLGTLE 255 (334)
Q Consensus 190 ~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~-~---------~~~f----~~~i~~L~~~l~~~~~~~~~ve~Lg~le 255 (334)
.+---+..-..-+.+|. | .|.+ . ...| .+.+..|++++.++++...+ ++
T Consensus 311 k~ltsfD~Y~~El~sg~----------L-~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~l--aV---- 373 (429)
T cd00256 311 QDLSSFDEYKSELRSGR----------L-HWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIIL--AV---- 373 (429)
T ss_pred HHcCCHHHHHHHHhcCC----------c-cCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCccee--eh----
Confidence 11111222222222221 1 1111 1 1112 24567777877544322221 10
Q ss_pred HHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638 256 VINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH 309 (334)
Q Consensus 256 av~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~ 309 (334)
|+-=+|-+++ .|..+..+.+.|+=..+.+++. .+|+++.-+++.|+..|.-|
T Consensus 374 Ac~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~--h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 374 ACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN--HEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred hhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHHh
Confidence 2333677777 6888888889998778888887 67899999999999887543
No 31
>KOG4646|consensus
Probab=98.16 E-value=5.9e-06 Score=68.47 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=96.3
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG 124 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~ 124 (334)
+.|++...=|.+.+-++-|..-+.+.++++..+.-+..+|+.+++.++..||||+-|+.+.+.|++++++|.++..+.+|
T Consensus 32 eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp 111 (173)
T KOG4646|consen 32 EAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSP 111 (173)
T ss_pred HHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCC
Confidence 45667777788888889999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c--hHHHHHHHHHHccCCh-hhhhHhhccCcHHHHHHHhc
Q psy12638 125 K--HQKIILQLLYHLSIED-RVKAMFAYTNCMSLLMNMLL 161 (334)
Q Consensus 125 ~--~~~~al~~L~~LS~~~-~~r~~i~~t~~i~~Lv~LL~ 161 (334)
. .-..++.+|++|+.-+ ..|..+.. |+.++.+.
T Consensus 112 ~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v~ 147 (173)
T KOG4646|consen 112 PEITVHSAALFLQLLEFGERTERDELLS----PAVVRTVQ 147 (173)
T ss_pred hHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHHH
Confidence 3 4677999999999875 55777743 44444443
No 32
>KOG2973|consensus
Probab=98.12 E-value=0.00036 Score=65.23 Aligned_cols=249 Identities=17% Similarity=0.172 Sum_probs=145.2
Q ss_pred hHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhccCCchHHHHHHHHHHccCChhhhhHhhccCc
Q psy12638 74 EKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKII-KIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNC 152 (334)
Q Consensus 74 ~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv-~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~~~r~~i~~t~~ 152 (334)
..+++++.+.++.++..|+.-|.+|+.- ..+.-.. +.-.|+.+.++++++...+-|+..|.|+|.+++.|..+-.. -
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~ll~~-~ 83 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKLLQD-L 83 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHHHHH-H
Confidence 3578999999999999999999999976 2222111 34567789999976665667889999999999998888766 6
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHh--c----CchHHHHHHHhc-C-C--hH--HHHHHHHHHhcC
Q psy12638 153 MSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK--N----RQLELLMIQAFT-Q-K--NI--LLLKVIRNMSIH 220 (334)
Q Consensus 153 i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~--~----~gl~~Lv~~l~~-~-~--d~--~~~k~l~nLa~~ 220 (334)
+..+++++.+ +..........++.|||.++.-...+.. . .|+..++..... + + .+ .+.-+..|+++.
T Consensus 84 ~k~l~~~~~~-p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~ 162 (353)
T KOG2973|consen 84 LKVLMDMLTD-PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQF 162 (353)
T ss_pred HHHHHHHhcC-cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhh
Confidence 6678888864 5556666666788999988776444332 1 355555444332 1 1 11 234456677776
Q ss_pred CCchhhhh--h--hHHHHHHHhhcCCccchhHHhhcHH---------------HH----HHHHHHhcCCcchH-HHhhhC
Q psy12638 221 SNVKHYFV--D--YIGDIANCVQKEKDENIKLECLGTL---------------EV----INFIGTAASDPISA-EHFCKN 276 (334)
Q Consensus 221 ~~~~~~f~--~--~i~~L~~~l~~~~~~~~~ve~Lg~l---------------ea----v~~lg~la~~~~~~-~~l~~~ 276 (334)
...++.|. + ...++..+ ++.+++----...|++ +. ...+--+|.-.+.. +-+.
T Consensus 163 ~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~-- 239 (353)
T KOG2973|consen 163 EAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMA-- 239 (353)
T ss_pred hhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHh--
Confidence 66655431 1 11112211 1111000000011111 00 11122222211110 1111
Q ss_pred CchHHHHHHhcc---ccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhh
Q psy12638 277 STVDLLINLLKE---MQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331 (334)
Q Consensus 277 g~I~~Lv~LL~~---~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~ 331 (334)
++-+-| +.|.. .-.|+++-.+.+-+++.+|.-...|+.+-.. ++. .+++.+|
T Consensus 240 ~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~k-gvY-pilRElh 294 (353)
T KOG2973|consen 240 KLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSK-GVY-PILRELH 294 (353)
T ss_pred cCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhc-Cch-HHHHHHh
Confidence 222233 55542 2357789999999999999999999877664 555 4555554
No 33
>KOG0168|consensus
Probab=98.09 E-value=0.00021 Score=74.26 Aligned_cols=240 Identities=12% Similarity=0.130 Sum_probs=167.4
Q ss_pred Chh-HHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhcc---CCchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHH
Q psy12638 84 DSN-LQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLE---EGKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLM 157 (334)
Q Consensus 84 ~~~-l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~---~~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv 157 (334)
++. .++....+-.+|+.-+ +.-.-+--.-++|.||.+|+ +.++...|++.|++|+.- ++.....++.++||.|.
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 443 3444445556777643 33333334568999999996 457788899999999875 78888889999999998
Q ss_pred HHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHH---hcCChHHHHHHHHHHhcCCCchhh--hhhhHH
Q psy12638 158 NMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQA---FTQKNILLLKVIRNMSIHSNVKHY--FVDYIG 232 (334)
Q Consensus 158 ~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l---~~~~d~~~~k~l~nLa~~~~~~~~--f~~~i~ 232 (334)
+-|.+-..-++.+..+..+--+|.. .-.++.+.||+-..+..+ ..+-.-.++.+..|++..=.+..- |.+.++
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealP 338 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALP 338 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 8888777777777777666666543 455677888888766654 222233456677777766443322 578899
Q ss_pred HHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC----CcchHHHhhhCCchHHHHHHhccccC--CchHHHHHHHHHHHH
Q psy12638 233 DIANCVQKEKDENIKLECLGTLEVINFIGTAAS----DPISAEHFCKNSTVDLLINLLKEMQE--DDEIVLQILYVFYQI 306 (334)
Q Consensus 233 ~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~~~~~--dde~vlqi~~~l~~l 306 (334)
.|..+++.++ +..+|. +++++..++. .++--+.++..|+|....+|+..... ...+..-++.+|..|
T Consensus 339 lL~~lLs~~D--~k~ies-----~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~m 411 (1051)
T KOG0168|consen 339 LLTPLLSYQD--KKPIES-----VCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLM 411 (1051)
T ss_pred HHHHHHhhcc--chhHHH-----HHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHH
Confidence 8988888776 333444 4566666655 55555578999999999999975422 345667789999999
Q ss_pred HcCchhhHHHhhcCCcHHHHHHhhhc
Q psy12638 307 CRHASCQNYLIKETDAPAYMIDLLND 332 (334)
Q Consensus 307 ~~~~~~~~~i~~~~~i~~~Li~LL~d 332 (334)
+...+.....+.+.+|.+.|-++|..
T Consensus 412 sS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 412 SSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred ccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 98877444455567999888888753
No 34
>KOG4500|consensus
Probab=98.04 E-value=0.00045 Score=67.25 Aligned_cols=241 Identities=15% Similarity=0.188 Sum_probs=155.7
Q ss_pred HHHHHHHhccc-chhhHHHhHhCCcchHHHhhccC---CC----hhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHH
Q psy12638 49 EGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMI---ED----SNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVS 119 (334)
Q Consensus 49 ~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~---~~----~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~ 119 (334)
+--++|.+.+- ..|||..+.+.|.-..+++.|+. .+ ++....+...|.|-+-+. +.|.+..+.|++|.|+.
T Consensus 106 Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~ 185 (604)
T KOG4500|consen 106 QCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAI 185 (604)
T ss_pred HHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHH
Confidence 66788888774 67899999999997777766643 33 378889999999999985 89999999999999999
Q ss_pred hcc----CCchHHHHHHHHHHcc-CCh-hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcC
Q psy12638 120 LLE----EGKHQKIILQLLYHLS-IED-RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNR 193 (334)
Q Consensus 120 lL~----~~~~~~~al~~L~~LS-~~~-~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~ 193 (334)
++. +..+.+..+.-.+||. ..- -....+..+.-...+++++.....++.......++.-.+.++..+-.+++.|
T Consensus 186 ~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~g 265 (604)
T KOG4500|consen 186 TYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNG 265 (604)
T ss_pred HhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcc
Confidence 995 3344555555555553 332 2356666667777788888766666766655566655665655555555554
Q ss_pred chHHHHHHHhc--------------------------CC-----------------------hH--HHH--HHHHHHhcC
Q psy12638 194 QLELLMIQAFT--------------------------QK-----------------------NI--LLL--KVIRNMSIH 220 (334)
Q Consensus 194 gl~~Lv~~l~~--------------------------~~-----------------------d~--~~~--k~l~nLa~~ 220 (334)
=+.-+++++.+ |+ |. ..+ -.+.|.|+.
T Consensus 266 l~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~ 345 (604)
T KOG4500|consen 266 LLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR 345 (604)
T ss_pred hHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc
Confidence 33333333332 11 11 111 135566666
Q ss_pred CCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccC
Q psy12638 221 SNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQE 291 (334)
Q Consensus 221 ~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~ 291 (334)
+.....| .+++.+|+..+...++.+.-++.-- ++.-++.+++---.++..+...|+.+.+.-.++..+.
T Consensus 346 D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qh--A~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~p 416 (604)
T KOG4500|consen 346 DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQH--ACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASP 416 (604)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHH--HHHHHHHhccccCCchhhccccchHHHHHHHHHhcCC
Confidence 6665554 3677777777655433332222100 1234556666644456789999999999988886554
No 35
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.99 E-value=8.5e-06 Score=53.61 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=37.8
Q ss_pred hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhc
Q psy12638 61 HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLS 99 (334)
Q Consensus 61 ~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS 99 (334)
++|+..+.+.|+||+|+++|.+++.++++.|+.+|.|||
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999997
No 36
>KOG2160|consensus
Probab=97.87 E-value=0.00023 Score=67.81 Aligned_cols=163 Identities=14% Similarity=0.152 Sum_probs=122.0
Q ss_pred cccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHH
Q psy12638 41 LIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVS 119 (334)
Q Consensus 41 ~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~ 119 (334)
..-+..|..|+--|+-|...-+|-..+...|...+++..+.+++..++..|+.++...+.+ |.+...+.+.|+.++|..
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 3444778899999999988888999999999999999999999999999999999999997 799999999999999999
Q ss_pred hccC--Cc-hHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCC-chHHHHHHHHHHHcc-CcchHHHHHhcC
Q psy12638 120 LLEE--GK-HQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDD-ETDNVLVALCINLAL-NSRNAELMLKNR 193 (334)
Q Consensus 120 lL~~--~~-~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~-~~~~~~~~ll~nLs~-~~~n~~~i~~~~ 193 (334)
.+.. +. .+..|+..++.|=. .......|-..+|...|.+.+.++..+ ..+.-++.++.+|.. +..... ++..-
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d-~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED-IASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-HHHHh
Confidence 9953 32 34555555555544 467888999999999999999874333 332233344445543 333344 55445
Q ss_pred chHHHHHHHhc
Q psy12638 194 QLELLMIQAFT 204 (334)
Q Consensus 194 gl~~Lv~~l~~ 204 (334)
+++..+.-..+
T Consensus 253 ~f~~~~~~l~~ 263 (342)
T KOG2160|consen 253 GFQRVLENLIS 263 (342)
T ss_pred hhhHHHHHHhh
Confidence 66655544443
No 37
>KOG0168|consensus
Probab=97.79 E-value=0.00036 Score=72.60 Aligned_cols=233 Identities=17% Similarity=0.135 Sum_probs=145.9
Q ss_pred hHHHHHH-Hhcccc-hhhHHHhHhCCcchHHHhhccCC-ChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc-
Q psy12638 48 REGRQDS-RKLSVY-HVNKEQMANLNLIEKLPRILMIE-DSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE- 122 (334)
Q Consensus 48 ~~A~~~L-~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~- 122 (334)
-+|++-| +.|++- .+.=..+.-.-+||.|++||+.+ +.+++..|.++|.+|..- |+.....|+.++||.|++=|.
T Consensus 186 leal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~ 265 (1051)
T KOG0168|consen 186 LEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT 265 (1051)
T ss_pred HHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh
Confidence 3555555 344443 22222233345788999999886 569999999999999976 899999999999999996663
Q ss_pred --CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc--cCcchHHHHHhcCchHHH
Q psy12638 123 --EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA--LNSRNAELMLKNRQLELL 198 (334)
Q Consensus 123 --~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs--~~~~n~~~i~~~~gl~~L 198 (334)
--+.-+.++.+|-.+|..+. ..|-++|++...+.+|.-. .-..+..+++++.|+. ..++.-.-+++ .+|.|
T Consensus 266 IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL 340 (1051)
T KOG0168|consen 266 IEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLL 340 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHH
Confidence 34567789999999999873 4566889888887777532 2244455678888984 33444445554 45544
Q ss_pred HHHHhcCChHH-HHH---HHHHHhcC---CCch-hh-h-hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-c
Q psy12638 199 MIQAFTQKNIL-LLK---VIRNMSIH---SNVK-HY-F-VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-P 267 (334)
Q Consensus 199 v~~l~~~~d~~-~~k---~l~nLa~~---~~~~-~~-f-~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~ 267 (334)
..+++.+|.. +-. ++..++.. .+.+ ++ + .+.|.....+++... ..+-.-+-+ ..|..+..++++ |
T Consensus 341 -~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~--t~Ls~~~~~-~vIrmls~msS~~p 416 (1051)
T KOG0168|consen 341 -TPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTP--TILSNGTYT-GVIRMLSLMSSGSP 416 (1051)
T ss_pred -HHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCc--ccccccchh-HHHHHHHHHccCCh
Confidence 4445544432 211 22223222 1111 11 2 245555555544332 000000000 256677888886 8
Q ss_pred chHHHhhhCCchHHHHHHhccc
Q psy12638 268 ISAEHFCKNSTVDLLINLLKEM 289 (334)
Q Consensus 268 ~~~~~l~~~g~I~~Lv~LL~~~ 289 (334)
..+..+.+.++...|..+|...
T Consensus 417 l~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 417 LLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHHHhhHHHHHHHHHhcc
Confidence 8888888999999999999753
No 38
>KOG2759|consensus
Probab=97.78 E-value=0.0021 Score=62.40 Aligned_cols=248 Identities=16% Similarity=0.140 Sum_probs=156.1
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccC--CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC---
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMI--EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE--- 123 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~--~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~--- 123 (334)
.|+++|+-+-..++.|.....++.+..+++.+.+ .+-++|...+-+++-|+|++...+.+.+.+.||.|++++++
T Consensus 176 ~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~K 255 (442)
T KOG2759|consen 176 FAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTK 255 (442)
T ss_pred HHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999833 35589999999999999999999999999999999999963
Q ss_pred CchHHHHHHHHHHccCChh---hhhHhhc---cCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHH
Q psy12638 124 GKHQKIILQLLYHLSIEDR---VKAMFAY---TNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLEL 197 (334)
Q Consensus 124 ~~~~~~al~~L~~LS~~~~---~r~~i~~---t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~ 197 (334)
+.....+++++.|+..... .+..++. .+.+++-++.|.+...++ .+...-+-+|.. +-.+.+.+---+..
T Consensus 256 EKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysD--EDL~~di~~L~e--~L~~svq~LsSFDe 331 (442)
T KOG2759|consen 256 EKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSD--EDLVDDIEFLTE--KLKNSVQDLSSFDE 331 (442)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCc--HHHHHHHHHHHH--HHHHHHHhhccHHH
Confidence 3466778999999966543 3333333 356777778887655444 222222222211 00111111111111
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCchhhh----hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHH
Q psy12638 198 LMIQAFTQKNILLLKVIRNMSIHSNVKHYF----VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEH 272 (334)
Q Consensus 198 Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f----~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~ 272 (334)
-..-+.+|.-.+- -+-+.=-.|..|..+| -+.+..|++++..+.+.-. =|+ |+-=+|...+ .|.++..
T Consensus 332 Y~sEl~sG~L~WS-P~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i--L~V----Ac~DIge~Vr~yP~gk~v 404 (442)
T KOG2759|consen 332 YKSELRSGRLEWS-PVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII--LCV----ACHDIGEYVRHYPEGKAV 404 (442)
T ss_pred HHHHHHhCCcCCC-ccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce--eeh----hhhhHHHHHHhCchHhHH
Confidence 1122222210000 0000000011122222 2455666666654442111 111 2333566666 7999999
Q ss_pred hhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638 273 FCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH 309 (334)
Q Consensus 273 l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~ 309 (334)
+.+.|+=..+.+|+. .+|+++.-.++.|+..+..|
T Consensus 405 v~k~ggKe~vM~Lln--h~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 405 VEKYGGKERVMNLLN--HEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHhchHHHHHHHhc--CCCchHHHHHHHHHHHHHhh
Confidence 999999999999997 78999999999999888654
No 39
>KOG1293|consensus
Probab=97.76 E-value=0.00016 Score=73.28 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=95.7
Q ss_pred hHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhh
Q psy12638 67 MANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRV 143 (334)
Q Consensus 67 m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~ 143 (334)
.....+++||++++..++.-++..++.+|+||.-+ ...|..+.+.|+|..+.+++.++ ..+..++.+|+|++...+.
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence 55567899999999999999999999999999987 68999999999999999999654 5689999999999987655
Q ss_pred hhHhhcc-C-cHHHHHHHhccCCCCchHHHHHHHHHHHccCcch
Q psy12638 144 KAMFAYT-N-CMSLLMNMLLVEQDDETDNVLVALCINLALNSRN 185 (334)
Q Consensus 144 r~~i~~t-~-~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n 185 (334)
...+.-- . .-..++.+. +.++..++..+..++-||..+.+.
T Consensus 495 ~~k~~~~~ki~a~~i~~l~-nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 495 EEKFQLLAKIPANLILDLI-NDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHHHHHHHhhHHHHHHHH-hCCCHHHHHHHHHHHHHhhcCcHH
Confidence 4444332 2 223355554 578889988899999999877554
No 40
>KOG4646|consensus
Probab=97.68 E-value=5.3e-05 Score=62.91 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=90.2
Q ss_pred hCCcchHHHh-hccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhh
Q psy12638 69 NLNLIEKLPR-ILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKA 145 (334)
Q Consensus 69 ~~g~I~~Lv~-LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~ 145 (334)
..|.+..||. +=...+.+.++..+.=|.|.+.||.|+..+.+.+++...|..|..+ .+.+-+++-|+|||.|..+..
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 3445556664 3345677889989999999999999999999999999999999644 467889999999999999999
Q ss_pred HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc
Q psy12638 146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR 184 (334)
Q Consensus 146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~ 184 (334)
.|.+.+++|.++.-+.+ +.+.....++..++.|+...+
T Consensus 94 ~I~ea~g~plii~~lss-p~e~tv~sa~~~l~~l~~~~R 131 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSS-PPEITVHSAALFLQLLEFGER 131 (173)
T ss_pred HHHHhcCCceEEeecCC-ChHHHHHHHHHHHHHhcCccc
Confidence 99999999999998875 444433434455556654443
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.67 E-value=0.00066 Score=68.59 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=57.6
Q ss_pred hHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc--CC
Q psy12638 48 REGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE--EG 124 (334)
Q Consensus 48 ~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~--~~ 124 (334)
..|++++.++.. ++ |. .-+++.+.+++.++++-+++.|+.++..+.. +++. +... .+|.+.++|. ++
T Consensus 97 ~lAL~~l~~i~~-~~----~~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~ 166 (526)
T PF01602_consen 97 GLALRTLSNIRT-PE----MA-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDP 166 (526)
T ss_dssp HHHHHHHHHH-S-HH----HH-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSH
T ss_pred HHHHhhhhhhcc-cc----hh-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcc
Confidence 367777777652 11 21 2267888999999999999999999999875 3332 2222 6899999995 44
Q ss_pred chHHHHHHHHHHc
Q psy12638 125 KHQKIILQLLYHL 137 (334)
Q Consensus 125 ~~~~~al~~L~~L 137 (334)
..+..|+.+++.+
T Consensus 167 ~V~~~a~~~l~~i 179 (526)
T PF01602_consen 167 SVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5678899999999
No 42
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.66 E-value=7.5e-05 Score=48.38 Aligned_cols=40 Identities=23% Similarity=0.200 Sum_probs=37.5
Q ss_pred hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC
Q psy12638 61 HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF 100 (334)
Q Consensus 61 ~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~ 100 (334)
++|+..+.+.|++++|++++.+++.++++.|+.+|.||++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4589999999999999999999999999999999999985
No 43
>KOG1293|consensus
Probab=97.59 E-value=0.0014 Score=66.67 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=123.9
Q ss_pred hHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccC
Q psy12638 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSI 139 (334)
Q Consensus 63 nk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~ 139 (334)
+|.++.+.-+...+..+.+..+.+....|+-++.++|-. ...|...-...++.+||+++.+|+ .+..+++++.|+-+
T Consensus 369 ~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm 448 (678)
T KOG1293|consen 369 LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM 448 (678)
T ss_pred HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence 444455555555566667778888888888888888865 467777888999999999998776 57889999999988
Q ss_pred C-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHH-hcCchHHHHHHHhcCChHH----HHHH
Q psy12638 140 E-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELML-KNRQLELLMIQAFTQKNIL----LLKV 213 (334)
Q Consensus 140 ~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~-~~~gl~~Lv~~l~~~~d~~----~~k~ 213 (334)
+ ...|..|-++|+|..+.+++.+ ++....+...-++.|+.++.++..... .......++..+.+..|+- .+++
T Consensus 449 efs~~kskfl~~ngId~l~s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fql 527 (678)
T KOG1293|consen 449 EFSNLKSKFLRNNGIDILESMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQL 527 (678)
T ss_pred hcccHHHHHHHcCcHHHHHHHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHH
Confidence 6 5789999999999999999975 566666777789999998887755444 3345556777777777653 4889
Q ss_pred HHHHhcCCCc
Q psy12638 214 IRNMSIHSNV 223 (334)
Q Consensus 214 l~nLa~~~~~ 223 (334)
+||+..+...
T Consensus 528 lRNl~c~~~~ 537 (678)
T KOG1293|consen 528 LRNLTCNSRK 537 (678)
T ss_pred HHHhhcCcHH
Confidence 9999987543
No 44
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.56 E-value=0.003 Score=63.16 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=86.2
Q ss_pred HHHHHhcccchhhHHHhHhCCcchHHHhhc----------cCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHH
Q psy12638 51 RQDSRKLSVYHVNKEQMANLNLIEKLPRIL----------MIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVS 119 (334)
Q Consensus 51 ~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL----------~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~ 119 (334)
+..|+-||-++.+-+.+.....+..|.++- ...+.++...|+++|+|.-+. +..|...++.|+.+.+++
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 455666777777777777777777777665 445778999999999999997 699999999999999999
Q ss_pred hccC-------CchHHHHHHHHHHccC-ChhhhhHhhcc-CcHHHHHHHhc
Q psy12638 120 LLEE-------GKHQKIILQLLYHLSI-EDRVKAMFAYT-NCMSLLMNMLL 161 (334)
Q Consensus 120 lL~~-------~~~~~~al~~L~~LS~-~~~~r~~i~~t-~~i~~Lv~LL~ 161 (334)
.|+. ++......++|+-++- ..+.|..+.+. +++..++..|.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~ 132 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALE 132 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHH
Confidence 9942 4567889999998875 45667666554 67777776663
No 45
>KOG2973|consensus
Probab=97.56 E-value=0.0029 Score=59.34 Aligned_cols=236 Identities=14% Similarity=0.135 Sum_probs=142.5
Q ss_pred hHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhc-----CChHHHHHhc
Q psy12638 48 REGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKI-----GFLPKLVSLL 121 (334)
Q Consensus 48 ~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~-----g~Ip~Lv~lL 121 (334)
+.|+++|-|+|-..+-+..|.+. .+..++.++-.+...+-+....+|.|||.++ .....+... .+++.++...
T Consensus 60 ~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~ 138 (353)
T KOG2973|consen 60 EPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAF 138 (353)
T ss_pred cHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHH
Confidence 48999999999998888888888 7778888888887888888889999999986 444444432 3666666555
Q ss_pred cCC-----chHHHHHHHHHHccCChhhhhHhhccCcHHH--HHHHhccCCCCchHH-HHHHHHHHHccCcchHHHHHhcC
Q psy12638 122 EEG-----KHQKIILQLLYHLSIEDRVKAMFAYTNCMSL--LMNMLLVEQDDETDN-VLVALCINLALNSRNAELMLKNR 193 (334)
Q Consensus 122 ~~~-----~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~--Lv~LL~~~~~~~~~~-~~~~ll~nLs~~~~n~~~i~~~~ 193 (334)
-++ ..-++.+.++.|||..+.+|..+-+..-+|. |..+ +..++.+++ .+++.+-|++++.++...+...
T Consensus 139 ~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~f--t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e- 215 (353)
T KOG2973|consen 139 CDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPF--TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDE- 215 (353)
T ss_pred hCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcc--cccchhhhccchHHHHHhhhccchhHHHHhcc-
Confidence 322 2356778899999999999999988774432 2222 223444444 5668888999999998888763
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHhcCCCc-hhhhhhhHHHHHHHhhcCC---ccchhHHhhcHHHHHHHHHHhcCCcch
Q psy12638 194 QLELLMIQAFTQKNILLLKVIRNMSIHSNV-KHYFVDYIGDIANCVQKEK---DENIKLECLGTLEVINFIGTAASDPIS 269 (334)
Q Consensus 194 gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~-~~~f~~~i~~L~~~l~~~~---~~~~~ve~Lg~leav~~lg~la~~~~~ 269 (334)
++..|-.++. =+|.-+.- .+.+.+.=..| ..+...+ .++.+.-+ .+.+|=.++....+
T Consensus 216 ~~~lLp~iLl------------Plagpee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~-----llEai~lLcaT~~G 277 (353)
T KOG2973|consen 216 SINLLPAILL------------PLAGPEELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKM-----LLEALLLLCATRAG 277 (353)
T ss_pred hHHHHHHHHh------------hcCCccccCHHHHhcCCHhh-hcCCccccCCCChHHHHH-----HHHHHHHHHhhhHh
Confidence 3332222221 11211100 00000111111 2232211 11111111 12233334445567
Q ss_pred HHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy12638 270 AEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQIC 307 (334)
Q Consensus 270 ~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~ 307 (334)
++.+.+.| +.++++.+-...+|+|+-. ++.-+.+|+
T Consensus 278 Re~lR~kg-vYpilRElhk~e~ded~~~-ace~vvq~L 313 (353)
T KOG2973|consen 278 REVLRSKG-VYPILRELHKWEEDEDIRE-ACEQVVQML 313 (353)
T ss_pred HHHHHhcC-chHHHHHHhcCCCcHHHHH-HHHHHHHHH
Confidence 88888888 5778888875555555443 444444444
No 46
>KOG2759|consensus
Probab=97.51 E-value=0.0047 Score=60.05 Aligned_cols=260 Identities=16% Similarity=0.183 Sum_probs=173.5
Q ss_pred chHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHH----HhcCChHHHHHhccCCchHHHHHHHHHHccCChhhhhHhh
Q psy12638 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKI----IKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFA 148 (334)
Q Consensus 73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~i----v~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~~~r~~i~ 148 (334)
=++.+++|..++.-+.+.+.+++.-|+.....+-.- +..|.+..+..--.+++....|++.|--+-..++.|..|.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v 195 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV 195 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Confidence 456778888888888888888888888654333322 2233333222222345666778888999999999999999
Q ss_pred ccCcHHHHHHHh-ccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCC-hHH---HHHHHHHHhcCCCc
Q psy12638 149 YTNCMSLLMNML-LVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQK-NIL---LLKVIRNMSIHSNV 223 (334)
Q Consensus 149 ~t~~i~~Lv~LL-~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~-d~~---~~k~l~nLa~~~~~ 223 (334)
..+|+..++..+ .+..+-+++-..+-...-|++++.-++.+.+.+-++.|.+.+.++. +.+ .+.++||+-...+.
T Consensus 196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 999999999999 4444556666665555688999999999988889999998887643 433 47779999988765
Q ss_pred hhhh--------hhhHHHHHHHhhcCC-ccchhHHhhcHH-----HHHHH------------HHHhcCCc---------c
Q psy12638 224 KHYF--------VDYIGDIANCVQKEK-DENIKLECLGTL-----EVINF------------IGTAASDP---------I 268 (334)
Q Consensus 224 ~~~f--------~~~i~~L~~~l~~~~-~~~~~ve~Lg~l-----eav~~------------lg~la~~~---------~ 268 (334)
++.+ ..-+.+-++.+.+++ .++=+.+-+..+ +.+.- -|.+.=+| +
T Consensus 276 ~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~e 355 (442)
T KOG2759|consen 276 RETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRE 355 (442)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHH
Confidence 4442 344555566666665 122223333222 11222 23332222 1
Q ss_pred hHHHhhhC--CchHHHHHHhccccCCchHHHHH-HHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 269 SAEHFCKN--STVDLLINLLKEMQEDDEIVLQI-LYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 269 ~~~~l~~~--g~I~~Lv~LL~~~~~dde~vlqi-~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
++..+.+. .++..|+.+|.++. |.+++++ ++=++...+|-+--..++.+.|.-..+.+||+-+|
T Consensus 356 Na~rlnennyellkiL~~lLe~s~--Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d 422 (442)
T KOG2759|consen 356 NADRLNENNYELLKILIKLLETSN--DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED 422 (442)
T ss_pred hHHHHhhccHHHHHHHHHHHhcCC--CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC
Confidence 34455444 47888999998533 4555555 88899999888866678888899988899998764
No 47
>PRK09687 putative lyase; Provisional
Probab=97.49 E-value=0.005 Score=57.82 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=66.3
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCChhhhhHhhc
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIEDRVKAMFAY 149 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~~~~r~~i~~ 149 (334)
-++.|.++|.+++..++..|+..|..+.. ..+++.+..++++ +..|..++.+|.+|...+.. .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 57788889999999999999888887763 4456777777754 45688888888888764432 2
Q ss_pred cCcHHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638 150 TNCMSLLMNMLLVEQDDETDNVLVALCINL 179 (334)
Q Consensus 150 t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL 179 (334)
..+++.|..++.+.++..+...++..+-++
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHR 118 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 346788887866666667766666665554
No 48
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.47 E-value=0.00011 Score=48.16 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=33.9
Q ss_pred ChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHcc
Q psy12638 101 DTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLS 138 (334)
Q Consensus 101 d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS 138 (334)
+++++..+++.|+||+|+++|++ ++.++.|+.+|.|||
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999964 467899999999987
No 49
>PF05536 Neurochondrin: Neurochondrin
Probab=97.41 E-value=0.0049 Score=63.13 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=115.4
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChh----HHHHHHhcCChHHHHHhccCC---------chHHHHHHHHHHcc
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN----LREKIIKIGFLPKLVSLLEEG---------KHQKIILQLLYHLS 138 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~----~r~~iv~~g~Ip~Lv~lL~~~---------~~~~~al~~L~~LS 138 (334)
.++..+++|++.+++-+-.++-++-++....+ .+..+.++=+.+-|-+||+++ ..+.+|+++|.-.|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46778899999998888899999999987543 344566655566777888541 25788999999999
Q ss_pred CChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCCh--HHHHHHHHH
Q psy12638 139 IEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKN--ILLLKVIRN 216 (334)
Q Consensus 139 ~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d--~~~~k~l~n 216 (334)
.+++....-.-.+.||.|++.+.++++.....++...+..++..++.++.+.+.|+++.|.+...++.. ..+++++.+
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~ 165 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLN 165 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHH
Confidence 998876555556799999999987666466677889999999999999999999999999999887433 235555555
Q ss_pred HhcC
Q psy12638 217 MSIH 220 (334)
Q Consensus 217 La~~ 220 (334)
+...
T Consensus 166 Lls~ 169 (543)
T PF05536_consen 166 LLSR 169 (543)
T ss_pred HHHh
Confidence 4443
No 50
>PRK09687 putative lyase; Provisional
Probab=97.20 E-value=0.011 Score=55.64 Aligned_cols=77 Identities=8% Similarity=-0.016 Sum_probs=47.7
Q ss_pred hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc-cC--
Q psy12638 47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL-EE-- 123 (334)
Q Consensus 47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL-~~-- 123 (334)
|..|+..|.++.. ..+.+.+.+++.++++.++..|+.+|.-|...+.. ...++|.|..++ ++
T Consensus 40 R~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d 104 (280)
T PRK09687 40 RISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKS 104 (280)
T ss_pred HHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCC
Confidence 3456666666542 34667777777777777788877777777653322 224556666663 33
Q ss_pred CchHHHHHHHHHHcc
Q psy12638 124 GKHQKIILQLLYHLS 138 (334)
Q Consensus 124 ~~~~~~al~~L~~LS 138 (334)
+..+..|+..|.+++
T Consensus 105 ~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 105 ACVRASAINATGHRC 119 (280)
T ss_pred HHHHHHHHHHHhccc
Confidence 345666777777764
No 51
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.19 E-value=0.0082 Score=60.65 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=102.4
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh----
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSL---- 120 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~l---- 120 (334)
--|+.|+.++.++. ..+.+.+... .++.+.+++.+++..++..|+.++..+..+++... ..+|++++.
T Consensus 129 ~VRk~A~~~l~~i~--~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~L~~~ 200 (526)
T PF01602_consen 129 YVRKKAALALLKIY--RKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-----SLIPKLIRILCQL 200 (526)
T ss_dssp HHHHHHHHHHHHHH--HHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-----THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-----hhHHHHHHHhhhc
Confidence 45667777777763 2233333334 79999999999999999999999999922222211 445555444
Q ss_pred cc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHH
Q psy12638 121 LE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELL 198 (334)
Q Consensus 121 L~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~L 198 (334)
++ +|-.+...+.+|..++..+.....- ...++.+..++.+ .+..+.-+++.++..+...+. +.. .++++|
T Consensus 201 l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s-~~~~V~~e~~~~i~~l~~~~~----~~~-~~~~~L 272 (526)
T PF01602_consen 201 LSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQS-SSPSVVYEAIRLIIKLSPSPE----LLQ-KAINPL 272 (526)
T ss_dssp HTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSHH----HHH-HHHHHH
T ss_pred ccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhc-cccHHHHHHHHHHHHhhcchH----HHH-hhHHHH
Confidence 44 3345777888888887654322200 3467888888874 455665667777777766555 222 467788
Q ss_pred HHHHhcCChHH---HHHHHHHHhcCC
Q psy12638 199 MIQAFTQKNIL---LLKVIRNMSIHS 221 (334)
Q Consensus 199 v~~l~~~~d~~---~~k~l~nLa~~~ 221 (334)
+.++.+.+..+ ++..+..++...
T Consensus 273 ~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 273 IKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHHhhcccchhehhHHHHHHHhhccc
Confidence 88876433323 466677777665
No 52
>KOG2160|consensus
Probab=97.18 E-value=0.026 Score=53.93 Aligned_cols=128 Identities=15% Similarity=0.135 Sum_probs=99.8
Q ss_pred cCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHH
Q psy12638 81 MIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLM 157 (334)
Q Consensus 81 ~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv 157 (334)
++-+.+-++.|+.-|.-+..+-+|-..+++.|+.++++..++ ++..|..|+.++...+.+ +...+.+-+.|+.++|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 344557788888888888888899999999999999999885 446899999999999765 78999999999999999
Q ss_pred HHhccCCCCchHHHHHHHHHHH-ccCcchHHHHHhcCchHHHHHHHhcCChH
Q psy12638 158 NMLLVEQDDETDNVLVALCINL-ALNSRNAELMLKNRQLELLMIQAFTQKNI 208 (334)
Q Consensus 158 ~LL~~~~~~~~~~~~~~ll~nL-s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~ 208 (334)
.++.+.++..+...++-.++.| -.++-....+...+|+..|.+.+.+++..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~ 224 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTS 224 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcc
Confidence 9998655555433333223333 34566688888889999998887765443
No 53
>KOG1789|consensus
Probab=97.07 E-value=0.06 Score=57.94 Aligned_cols=281 Identities=13% Similarity=0.105 Sum_probs=168.8
Q ss_pred HHHHHHHhccc-chh----hHHHhHhCCcchHHHhhccC-CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc-
Q psy12638 49 EGRQDSRKLSV-YHV----NKEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL- 121 (334)
Q Consensus 49 ~A~~~L~~LSi-~~e----nk~~m~~~g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL- 121 (334)
-++++|+++-. +++ .-.+...-|-.+.+...+.+ ++.+++..|+..+.-+..+.++-..|++.|.+..|..+|
T Consensus 1744 m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1744 MTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred HHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHh
Confidence 46788887743 231 12344455777777766655 567899999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc----chHHHHHhc-----
Q psy12638 122 EEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS----RNAELMLKN----- 192 (334)
Q Consensus 122 ~~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~----~n~~~i~~~----- 192 (334)
+.|..++.++-+||-|+...+.-.+-.+.|++..+.+++-.....+..-.++.++..|..|+ +.+--.++-
T Consensus 1824 S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f 1903 (2235)
T KOG1789|consen 1824 SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIF 1903 (2235)
T ss_pred cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHH
Confidence 57899999999999999987666666677888888888866555565555556777775553 222111110
Q ss_pred -----CchHHHHHHHhcCC-hHHH-------HH---HHHHHh-------------cCCCchhh--h------hhhHHHHH
Q psy12638 193 -----RQLELLMIQAFTQK-NILL-------LK---VIRNMS-------------IHSNVKHY--F------VDYIGDIA 235 (334)
Q Consensus 193 -----~gl~~Lv~~l~~~~-d~~~-------~k---~l~nLa-------------~~~~~~~~--f------~~~i~~L~ 235 (334)
++=+..|...-.+. .|.+ -+ .++.++ .|+-..+. | ...-+...
T Consensus 1904 ~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~ 1983 (2235)
T KOG1789|consen 1904 ADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSIN 1983 (2235)
T ss_pred HHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhh
Confidence 11122222211111 1110 00 111111 01100000 0 00011111
Q ss_pred HH-hhcCC-----ccchhHHhhcHH----------------HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCc
Q psy12638 236 NC-VQKEK-----DENIKLECLGTL----------------EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293 (334)
Q Consensus 236 ~~-l~~~~-----~~~~~ve~Lg~l----------------eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dd 293 (334)
+. +...+ ...++.+.|... -....+..+.-.|+.++.+-.-|-+|.++.-..-.. .
T Consensus 1984 R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n--~ 2061 (2235)
T KOG1789|consen 1984 REFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQN--T 2061 (2235)
T ss_pred HHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcC--C
Confidence 11 11110 112333322211 123334455568999999999999999999775222 2
Q ss_pred hHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhc
Q psy12638 294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLND 332 (334)
Q Consensus 294 e~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d 332 (334)
-+-..+++++-.++.+.-|.+.+.+-..+- .++.+|+.
T Consensus 2062 s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~-~~m~~mkK 2099 (2235)
T KOG1789|consen 2062 SAPRSAIRVLHELSENQFCCDAMAQLPCID-GIMKSMKK 2099 (2235)
T ss_pred cCcHHHHHHHHHHhhccHHHHHHhccccch-hhHHHHHh
Confidence 355778999999998888999888765555 57777764
No 54
>PTZ00429 beta-adaptin; Provisional
Probab=96.99 E-value=0.041 Score=58.42 Aligned_cols=247 Identities=16% Similarity=0.132 Sum_probs=121.7
Q ss_pred hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CC
Q psy12638 47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EG 124 (334)
Q Consensus 47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~ 124 (334)
|+.|+.++.|+ +..+.+.+.+.|.++.|.++|...+..++.+|+.+|+-+......+-. ...+.+.+|...|. ++
T Consensus 157 RKtAalai~Kl--y~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~E 233 (746)
T PTZ00429 157 RKTAAMGLGKL--FHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNE 233 (746)
T ss_pred HHHHHHHHHHH--HhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCCh
Confidence 44555666554 333444445566777777777777777777777777777643211111 12233444444443 33
Q ss_pred chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc--chHHHHHhcCchHHHHHHH
Q psy12638 125 KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS--RNAELMLKNRQLELLMIQA 202 (334)
Q Consensus 125 ~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~--~n~~~i~~~~gl~~Lv~~l 202 (334)
-.|-..+.+|..-.-.++ .. ....+..+...|.+ .++.+.-+++.++++++... +....... .--++|+.++
T Consensus 234 W~Qi~IL~lL~~y~P~~~--~e--~~~il~~l~~~Lq~-~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~ 307 (746)
T PTZ00429 234 WGQLYILELLAAQRPSDK--ES--AETLLTRVLPRMSH-QNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS 307 (746)
T ss_pred HHHHHHHHHHHhcCCCCc--HH--HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh
Confidence 344445555533211111 00 01345666666665 45666666767777775432 21121111 1125666653
Q ss_pred hcCChHHH---HHHHHHHhcCCCch-----hhh------hhh-----HHHHHHHhhcCCccchhHHhhcHH---------
Q psy12638 203 FTQKNILL---LKVIRNMSIHSNVK-----HYF------VDY-----IGDIANCVQKEKDENIKLECLGTL--------- 254 (334)
Q Consensus 203 ~~~~d~~~---~k~l~nLa~~~~~~-----~~f------~~~-----i~~L~~~l~~~~~~~~~ve~Lg~l--------- 254 (334)
++..... ++.++-+....+.. ..| ..+ +.-|..+..+...++.+-|.....
T Consensus 308 -ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r 386 (746)
T PTZ00429 308 -RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVV 386 (746)
T ss_pred -CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHH
Confidence 3322222 33344444433321 112 112 222333332222223333332222
Q ss_pred HHHHHHHHhcCC-cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch
Q psy12638 255 EVINFIGTAASD-PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS 311 (334)
Q Consensus 255 eav~~lg~la~~-~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~ 311 (334)
+++.++|.+|.. +..+. ..+..|.++++.+. +++.|++.++..+.+..+
T Consensus 387 ~aIrAIg~lA~k~~~~a~-----~cV~~Ll~ll~~~~---~~v~e~i~vik~IlrkyP 436 (746)
T PTZ00429 387 EVVRAIASLAIKVDSVAP-----DCANLLLQIVDRRP---ELLPQVVTAAKDIVRKYP 436 (746)
T ss_pred HHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHCc
Confidence 688999999973 33232 26788888886432 477788888887765444
No 55
>PF05536 Neurochondrin: Neurochondrin
Probab=96.91 E-value=0.0058 Score=62.65 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=98.0
Q ss_pred HHHHhcccchh----hHHHhHhCCcchHHHhhccC-------CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh
Q psy12638 52 QDSRKLSVYHV----NKEQMANLNLIEKLPRILMI-------EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSL 120 (334)
Q Consensus 52 ~~L~~LSi~~e----nk~~m~~~g~I~~Lv~LL~~-------~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~l 120 (334)
..+.|+--..+ ++..+.++=..+.|-+||.+ +....+..|+.+|.-++.+++....=.=.+-||.|+++
T Consensus 27 ~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~ 106 (543)
T PF05536_consen 27 LLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEI 106 (543)
T ss_pred HHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHH
Confidence 33455554322 34456666556788899988 44678999999999999999876333334679999999
Q ss_pred cc--CC-chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc
Q psy12638 121 LE--EG-KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR 184 (334)
Q Consensus 121 L~--~~-~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~ 184 (334)
+. ++ ....-|+..|+.++..++++..+.+.|+|+.|.+.+.+ .+.....++.++.++....+
T Consensus 107 l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 107 LSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLG 171 (543)
T ss_pred HHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcc
Confidence 94 33 45778999999999999999999999999999999986 33334556688888754433
No 56
>KOG0946|consensus
Probab=96.88 E-value=0.22 Score=52.21 Aligned_cols=209 Identities=16% Similarity=0.169 Sum_probs=144.0
Q ss_pred CcchHHHhhccCC-ChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc----CCchHHHHHHHHHHccCCh----
Q psy12638 71 NLIEKLPRILMIE-DSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE----EGKHQKIILQLLYHLSIED---- 141 (334)
Q Consensus 71 g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~----~~~~~~~al~~L~~LS~~~---- 141 (334)
..|++|+.-+.+. -.+=++.|++.|.-+|- ..|.... +-+.++|+..|. +++.-.+++-+++++-..+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 3567777655442 23447889999998884 6666655 556799999994 5678899999999995544
Q ss_pred ---hhh----------hHhhc-cCcHHHHHHHhccCCCCchHHHHHHHHHHHccC--cchHHHHHh-cCchHHHHHHHhc
Q psy12638 142 ---RVK----------AMFAY-TNCMSLLMNMLLVEQDDETDNVLVALCINLALN--SRNAELMLK-NRQLELLMIQAFT 204 (334)
Q Consensus 142 ---~~r----------~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~--~~n~~~i~~-~~gl~~Lv~~l~~ 204 (334)
..+ .+|.. .|-|..|+..+.... -.++.-++.++.++-.+ .+-+..+.. --|+..+|+.+-.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~D-F~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFD-FHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhc-hhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 222 22333 467888899887543 34445566777766333 344555554 3699999999988
Q ss_pred CChHH---HHHHHHHHhcCCCchhh---hhhhHHHHHHHhhcCCccc--hhH-HhhcHHHHHHHHHHhcC-CcchHHHhh
Q psy12638 205 QKNIL---LLKVIRNMSIHSNVKHY---FVDYIGDIANCVQKEKDEN--IKL-ECLGTLEVINFIGTAAS-DPISAEHFC 274 (334)
Q Consensus 205 ~~d~~---~~k~l~nLa~~~~~~~~---f~~~i~~L~~~l~~~~~~~--~~v-e~Lg~leav~~lg~la~-~~~~~~~l~ 274 (334)
+.+|+ .+-++..+..++++-|. |--+..+|..++.+.++-+ .++ +|| +.+-++-+ +..+...|.
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL------~ll~NLLK~N~SNQ~~Fr 251 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCL------ILLNNLLKNNISNQNFFR 251 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------HHHHHHHhhCcchhhHHh
Confidence 88774 45567778888887766 7788899999998766333 333 343 44456655 455667889
Q ss_pred hCCchHHHHHHhccc
Q psy12638 275 KNSTVDLLINLLKEM 289 (334)
Q Consensus 275 ~~g~I~~Lv~LL~~~ 289 (334)
+.+.||.|..+|...
T Consensus 252 E~~~i~rL~klL~~f 266 (970)
T KOG0946|consen 252 EGSYIPRLLKLLSVF 266 (970)
T ss_pred ccccHHHHHhhcCcc
Confidence 999999999999753
No 57
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.86 E-value=0.0017 Score=41.83 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=33.1
Q ss_pred hhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccC
Q psy12638 102 TNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSI 139 (334)
Q Consensus 102 ~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~ 139 (334)
++++..+++.|+||+|+++++ +++.+..++.+|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 468999999999999999995 45678999999999873
No 58
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.60 E-value=0.0022 Score=48.49 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=59.6
Q ss_pred chHHHhhc-cCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHhhc
Q psy12638 73 IEKLPRIL-MIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAY 149 (334)
Q Consensus 73 I~~Lv~LL-~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i~~ 149 (334)
||.|++.| .++++.++..|+.+|.++- ++ .++|.|+++++++ ..+..|+..|..+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-DP---------EAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 58899988 8899999999999999553 12 4499999999654 56888888888773 3
Q ss_pred cCcHHHHHHHhccCCCCchHHHH
Q psy12638 150 TNCMSLLMNMLLVEQDDETDNVL 172 (334)
Q Consensus 150 t~~i~~Lv~LL~~~~~~~~~~~~ 172 (334)
..+++.|.+++.+.++..++..+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a 83 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAA 83 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHH
Confidence 44899999999865444444443
No 59
>KOG2734|consensus
Probab=96.42 E-value=0.29 Score=48.25 Aligned_cols=170 Identities=17% Similarity=0.161 Sum_probs=123.5
Q ss_pred cCCcceeecccCcchh---------HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-
Q psy12638 33 RGNCNCYGLIVPKSKR---------EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT- 102 (334)
Q Consensus 33 r~~~~~~~~~~~~~~~---------~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~- 102 (334)
|.|.++++-++.+-.+ +...-+.-+|..|+==.-.++.++|+.|+.||.+.|.++-...+.+|--|.-.+
T Consensus 78 ~~Nqe~RiK~~dnPeKFmeSE~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv 157 (536)
T KOG2734|consen 78 RKNQELRIKYPDNPEKFMESEVDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDV 157 (536)
T ss_pred hhhHHhhccCCCCHHHHHHhhccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcc
Confidence 5666777777665555 566677778888887778899999999999999999999999999999887321
Q ss_pred ---------hHHHHHHhcCChHHHHHhcc--CC------chHHHHHHHHHHc-cCChhhhhHhhccCcHHHHHHHhc-cC
Q psy12638 103 ---------NLREKIIKIGFLPKLVSLLE--EG------KHQKIILQLLYHL-SIEDRVKAMFAYTNCMSLLMNMLL-VE 163 (334)
Q Consensus 103 ---------~~r~~iv~~g~Ip~Lv~lL~--~~------~~~~~al~~L~~L-S~~~~~r~~i~~t~~i~~Lv~LL~-~~ 163 (334)
..-.++|+.++|+.||.-+. ++ ..-+.+++++-|+ ..++.....+++.|-+.+|..-+. .+
T Consensus 158 ~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~ 237 (536)
T KOG2734|consen 158 LYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKA 237 (536)
T ss_pred cccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhccc
Confidence 24568899999999999883 21 1256788888888 556788888889988888777443 32
Q ss_pred CCCchHHHHHHHH-HHHccCcchHHHHHhcCchHHHHHHH
Q psy12638 164 QDDETDNVLVALC-INLALNSRNAELMLKNRQLELLMIQA 202 (334)
Q Consensus 164 ~~~~~~~~~~~ll-~nLs~~~~n~~~i~~~~gl~~Lv~~l 202 (334)
+.+....=+..++ +-|....+|+.....-+|+..+++.+
T Consensus 238 ~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~l 277 (536)
T KOG2734|consen 238 AFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQL 277 (536)
T ss_pred CcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhc
Confidence 3333222222333 33444556888888888988877664
No 60
>PTZ00429 beta-adaptin; Provisional
Probab=96.34 E-value=0.61 Score=49.71 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=80.0
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhh
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFA 148 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~ 148 (334)
+++++.+.+.+.++-+++.|+-++.++-. ++ +.+.+.|.++.|.++|. ++.....|+.+|+.+......+-.+.
T Consensus 141 l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~ 217 (746)
T PTZ00429 141 TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS 217 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH
Confidence 34556778888899999999999999854 23 23456789999999995 56678889999999976543222221
Q ss_pred ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHH
Q psy12638 149 YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRN 216 (334)
Q Consensus 149 ~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~n 216 (334)
.+.+..|...+... ++-.+-..+.++.. ..++...... ..+..+..++.+.+..+++.+++.
T Consensus 218 -~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~--y~P~~~~e~~--~il~~l~~~Lq~~N~AVVl~Aik~ 279 (746)
T PTZ00429 218 -NEWVNRLVYHLPEC-NEWGQLYILELLAA--QRPSDKESAE--TLLTRVLPRMSHQNPAVVMGAIKV 279 (746)
T ss_pred -HHHHHHHHHHhhcC-ChHHHHHHHHHHHh--cCCCCcHHHH--HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 22344455555421 22221222333322 2222222211 245556666677777776555443
No 61
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.33 E-value=0.31 Score=53.16 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=43.0
Q ss_pred hCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHc
Q psy12638 69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHL 137 (334)
Q Consensus 69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~L 137 (334)
..+.++.|++.|.++++.++..|+..|..+. ..+++|.|+..|+++ ..+..|+..|..+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3447778888888888889998888888664 244678888888544 4566777777655
No 62
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.0086 Score=59.97 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=108.8
Q ss_pred HHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhc--cCCc
Q psy12638 50 GRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLL--EEGK 125 (334)
Q Consensus 50 A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL--~~~~ 125 (334)
+..||+.+|- ..-=|..+.+..++++|+++|+.++-.+.-.++..++|+..- ...+..|.+.|+|..|+.++ +++.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 3566666663 345788889999999999999998888888899999999986 57899999999999999999 4667
Q ss_pred hHHHHHHHHHHccCC--hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc
Q psy12638 126 HQKIILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR 184 (334)
Q Consensus 126 ~~~~al~~L~~LS~~--~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~ 184 (334)
+|..+..+|+|+-.. ++-+-++-..-|+..++++.. .+.-.++...+.++-|++.|.+
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~N-Dpc~~vq~q~lQilrNftc~~~ 548 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTN-DPCFKVQHQVLQILRNFTCDTS 548 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhc-CcccccHHHHHHHHHhcccccc
Confidence 899999999999654 444556666678999999985 5666777778899999987654
No 63
>KOG2171|consensus
Probab=96.21 E-value=0.2 Score=54.35 Aligned_cols=186 Identities=16% Similarity=0.164 Sum_probs=106.8
Q ss_pred hHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHH----HhccC
Q psy12638 48 REGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLV----SLLEE 123 (334)
Q Consensus 48 ~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv----~lL~~ 123 (334)
+.|...+-.||..-.-|. +-.=+.+.+..+++|.+-.-+..|+.+|.-.+. ..-+.|.. -+|+++ ..|++
T Consensus 327 ~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E--Gc~~~m~~--~l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 327 RAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTEWKERHAALLALSVIAE--GCSDVMIG--NLPKILPIVLNGLND 400 (1075)
T ss_pred HHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--ccHHHHHH--HHHHHHHHHHhhcCC
Confidence 345666666665422111 111244566778899999999999888888875 33333332 455554 44555
Q ss_pred C--chHHHHHHHHHHccCCh-hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638 124 G--KHQKIILQLLYHLSIED-RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI 200 (334)
Q Consensus 124 ~--~~~~~al~~L~~LS~~~-~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~ 200 (334)
| ..|..|+..+.++|.|= ..-......-.+|.|+..+.+..+..++..+++.+.|.+.+ +-..+.+ ..++.+++
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~--~~~~~l~-pYLd~lm~ 477 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE--CDKSILE-PYLDGLME 477 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh--CcHHHHH-HHHHHHHH
Confidence 4 57888999999999982 22222223345668899998766778877777777887543 3333333 46666666
Q ss_pred ----HHhcCChHHH-HHHHHHHhcCCCchhh-hhhhHHH----HHHHhhcCC
Q psy12638 201 ----QAFTQKNILL-LKVIRNMSIHSNVKHY-FVDYIGD----IANCVQKEK 242 (334)
Q Consensus 201 ----~l~~~~d~~~-~k~l~nLa~~~~~~~~-f~~~i~~----L~~~l~~~~ 242 (334)
.+..+..+.+ =.++..++.-....+. |.+|.+. |..++.+.+
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC
Confidence 3333443332 2234444443333333 5444333 334454544
No 64
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.10 E-value=0.12 Score=50.62 Aligned_cols=158 Identities=15% Similarity=0.225 Sum_probs=102.5
Q ss_pred cHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCC---hH---HHHHHHHHHhcCCCchh
Q psy12638 152 CMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQK---NI---LLLKVIRNMSIHSNVKH 225 (334)
Q Consensus 152 ~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~---d~---~~~k~l~nLa~~~~~~~ 225 (334)
..+.+..++.+.+ .++.-...+++-.+..|++..+.+.+. .++.++-+.+... +. .++|++|.+-......+
T Consensus 26 ~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l-~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKL-HIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHc-CCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 3444444555433 666555556676777888888888876 5777777766432 11 47999999888866665
Q ss_pred hhhhhHH-HHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHH
Q psy12638 226 YFVDYIG-DIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVF 303 (334)
Q Consensus 226 ~f~~~i~-~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l 303 (334)
.|...+. .++. +.++..+.+---|+ ..+..++- +|+ ++.+.|++++|.+.+..+.- ++.-.++.++
T Consensus 104 ~~~~~vvralva-iae~~~D~lr~~cl------etL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~--~~~~~l~~~l 171 (371)
T PF14664_consen 104 EIPRGVVRALVA-IAEHEDDRLRRICL------ETLCELALLNPE---LVAECGGIRVLLRALIDGSF--SISESLLDTL 171 (371)
T ss_pred cCCHHHHHHHHH-HHhCCchHHHHHHH------HHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccH--hHHHHHHHHH
Confidence 5654444 4444 44444333332333 33345554 555 88899999999999986443 3767789999
Q ss_pred HHHHcCchhhHHHhhcCCcH
Q psy12638 304 YQICRHASCQNYLIKETDAP 323 (334)
Q Consensus 304 ~~l~~~~~~~~~i~~~~~i~ 323 (334)
..+..++.+|+.+....++-
T Consensus 172 L~lLd~p~tR~yl~~~~dL~ 191 (371)
T PF14664_consen 172 LYLLDSPRTRKYLRPGFDLE 191 (371)
T ss_pred HHHhCCcchhhhhcCCccHH
Confidence 99999999998776644433
No 65
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.72 E-value=0.47 Score=45.13 Aligned_cols=225 Identities=12% Similarity=0.139 Sum_probs=133.1
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcC-ChHHHHHhcc----CCchHHHHHHHHHHccCChhhhhHhhc
Q psy12638 75 KLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIG-FLPKLVSLLE----EGKHQKIILQLLYHLSIEDRVKAMFAY 149 (334)
Q Consensus 75 ~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g-~Ip~Lv~lL~----~~~~~~~al~~L~~LS~~~~~r~~i~~ 149 (334)
.|-+++++=+.-.+-.|+++|-||.++++-|..+-..+ +=-.++++++ ..+.|..++-+.+.|+.....-.-|-+
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K 232 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDK 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34445555566668889999999999999998877544 4457777775 345788899999999998866544433
Q ss_pred -cCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-Cc-chHHHHHhcCchHHHHHHHhcC--ChHHHHHHHHHHhcC-CCc
Q psy12638 150 -TNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NS-RNAELMLKNRQLELLMIQAFTQ--KNILLLKVIRNMSIH-SNV 223 (334)
Q Consensus 150 -t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~-~n~~~i~~~~gl~~Lv~~l~~~--~d~~~~k~l~nLa~~-~~~ 223 (334)
-+-|--|++++....-+.+-.-+.+++.|+.- .+ +....+.-.|-+.+-++.+.++ .|..+..=+-++-.- ..+
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 34677777887653333333334456667633 11 2333444445566666666654 344332222221110 011
Q ss_pred hhh---hhhhHHHH-----------------------------------HHHhhcCCccchhHHhhcHHHHHHHHHHhcC
Q psy12638 224 KHY---FVDYIGDI-----------------------------------ANCVQKEKDENIKLECLGTLEVINFIGTAAS 265 (334)
Q Consensus 224 ~~~---f~~~i~~L-----------------------------------~~~l~~~~~~~~~ve~Lg~leav~~lg~la~ 265 (334)
.+. |+.++..| .+.+......-.++ -|+--++.+.+
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~------vAc~Di~~~Vr 386 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWIC------VACSDIFQLVR 386 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEe------eeHhhHHHHHH
Confidence 111 33333333 22221111000000 12222444444
Q ss_pred -CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy12638 266 -DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQIC 307 (334)
Q Consensus 266 -~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~ 307 (334)
.|+....+-+.|+=..+.+|++ .+|+|+.-+++.+++++.
T Consensus 387 ~~PE~~~vl~Kyg~k~~im~L~n--h~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 387 ASPEINAVLSKYGVKEIIMNLIN--HDDDDVKFEALQALQTCI 427 (432)
T ss_pred hCchHHHHHHHhhhHHHHHHHhc--CCCchhhHHHHHHHHHHH
Confidence 7999999999999999999997 788999999988887764
No 66
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.66 E-value=0.12 Score=45.74 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=81.1
Q ss_pred ccCCChhHHHHHHHHHHhhcCChhHHHHHHhc----------------CChHHHHHhccC--------CchHHHHHHHHH
Q psy12638 80 LMIEDSNLQSSTLKLLFNLSFDTNLREKIIKI----------------GFLPKLVSLLEE--------GKHQKIILQLLY 135 (334)
Q Consensus 80 L~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~----------------g~Ip~Lv~lL~~--------~~~~~~al~~L~ 135 (334)
+..++...-..+.++|.||+..++....+... ..+..|+.++.. ..-.++.+.+|.
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 34455677888999999999998887766543 356788877732 124677889999
Q ss_pred HccCChhhhhHhhccC-c---HHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhc
Q psy12638 136 HLSIEDRVKAMFAYTN-C---MSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKN 192 (334)
Q Consensus 136 ~LS~~~~~r~~i~~t~-~---i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~ 192 (334)
|+|..+++|..|-..+ + +..|+.+..+ .+..-+..++..+-|++++.+....+...
T Consensus 84 NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~-~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 84 NLSQLPEGRQFFLDPQRYDGPLQKLLPFTEH-KSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred HhcCCHHHHHHHhCchhhhhHHHHHHHHhcc-CcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 9999999999997753 3 5566666654 33343445667888999999888777753
No 67
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.54 E-value=0.11 Score=44.60 Aligned_cols=125 Identities=12% Similarity=0.150 Sum_probs=95.8
Q ss_pred HhHhCCcchHHHhhccCCCh------hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc----CCchHHHHHHHHH
Q psy12638 66 QMANLNLIEKLPRILMIEDS------NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE----EGKHQKIILQLLY 135 (334)
Q Consensus 66 ~m~~~g~I~~Lv~LL~~~~~------~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~----~~~~~~~al~~L~ 135 (334)
+..+.|+++.|++++.++.. ..+..++.++..|-.+.-+-.+..+..+|.+++..++ ++...+.|+++|-
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 34566899999999998874 7889999999999999875567889999999999995 3456888999999
Q ss_pred HccCChhh-hhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH--ccCcchHHHHHh
Q psy12638 136 HLSIEDRV-KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL--ALNSRNAELMLK 191 (334)
Q Consensus 136 ~LS~~~~~-r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL--s~~~~n~~~i~~ 191 (334)
++-..... ...+.+.=.++.|+..|.. ++.+++..+++++-=| -.++..++.|.+
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99776544 5555555589999999985 6778888777766433 234444555554
No 68
>KOG4413|consensus
Probab=95.26 E-value=1.7 Score=41.62 Aligned_cols=231 Identities=15% Similarity=0.159 Sum_probs=141.5
Q ss_pred HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHH--HHhc-c-CCchHHHHHHHHHHc-cCChh
Q psy12638 68 ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKL--VSLL-E-EGKHQKIILQLLYHL-SIEDR 142 (334)
Q Consensus 68 ~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~L--v~lL-~-~~~~~~~al~~L~~L-S~~~~ 142 (334)
+..|+.+.++......|.++-+.|...+..+|-.+..-+.|-+......+ +.+- + ++..|...+.+...+ |..++
T Consensus 125 vNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 125 VNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 46788888888888889999999999999999988888888777766543 3333 2 344455566666666 44566
Q ss_pred hhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCC--hHH--------HHH
Q psy12638 143 VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQK--NIL--------LLK 212 (334)
Q Consensus 143 ~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~--d~~--------~~k 212 (334)
.-..-..+|-+..|-.=+.-..+.-+.-.++.+.+-|+.....++-+.++|-++ ++.-.++|. ||. ..|
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglId-licnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLID-LICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHH-HHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 666666677777666555421333333345567778877777888888875444 444445543 342 133
Q ss_pred HHHHHhcCCCchhh----hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcc
Q psy12638 213 VIRNMSIHSNVKHY----FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKE 288 (334)
Q Consensus 213 ~l~nLa~~~~~~~~----f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~ 288 (334)
...+.+..+-..+. +.-++..-..++..++ .-.++. |+-++|.+.++.+.++++.+.| -|..-.++..
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiEmnD--pdaiea-----AiDalGilGSnteGadlllkTg-ppaaehllar 355 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMND--PDAIEA-----AIDALGILGSNTEGADLLLKTG-PPAAEHLLAR 355 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCC--chHHHH-----HHHHHHhccCCcchhHHHhccC-ChHHHHHHHH
Confidence 44455554433222 2233333334443332 222333 6788999999999899988887 4555555532
Q ss_pred --ccCCchHHHHHHHHHHHHH
Q psy12638 289 --MQEDDEIVLQILYVFYQIC 307 (334)
Q Consensus 289 --~~~dde~vlqi~~~l~~l~ 307 (334)
.+.-..-+...++|+..++
T Consensus 356 afdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 356 AFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred HhcccccchHHHHHHHHHHhh
Confidence 2222334444566666665
No 69
>KOG1789|consensus
Probab=95.22 E-value=1 Score=49.10 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=70.6
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc---cCCc
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL---EEGK 125 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL---~~~~ 125 (334)
-|+..+..+..+.++-..|.+.|++..|+.+|-| .+..++.++..||-|+..++.-.+-.+.|++..+..++ .++.
T Consensus 1791 LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~Q 1869 (2235)
T KOG1789|consen 1791 LALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQ 1869 (2235)
T ss_pred HHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHH
Confidence 3444444554566667778999999999999977 57889999999999999997766666677766666666 3556
Q ss_pred hHHHHHHHHHHccCCh
Q psy12638 126 HQKIILQLLYHLSIED 141 (334)
Q Consensus 126 ~~~~al~~L~~LS~~~ 141 (334)
++..|+.+|..|--|.
T Consensus 1870 qRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1870 QRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 7777889999997764
No 70
>KOG2734|consensus
Probab=95.21 E-value=1.4 Score=43.62 Aligned_cols=194 Identities=11% Similarity=0.139 Sum_probs=108.6
Q ss_pred HHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCChh---h----h---hHhhccCcHHH
Q psy12638 88 QSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIEDR---V----K---AMFAYTNCMSL 155 (334)
Q Consensus 88 ~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~~~---~----r---~~i~~t~~i~~ 155 (334)
+...+.=+.-+|.-|+.-..+++.++++.|+.||+. .+.....+-+|-.|...|- + + ...+..+.++.
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 455667788899999999999999999999999964 4566667777888876541 1 1 12223334444
Q ss_pred HHHHhccCCCCch------HHHHHHHHHHH-ccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhhhh
Q psy12638 156 LMNMLLVEQDDET------DNVLVALCINL-ALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFV 228 (334)
Q Consensus 156 Lv~LL~~~~~~~~------~~~~~~ll~nL-s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f~ 228 (334)
|++-+..- ++.+ ...+.+++.|+ ..++.-++.+++.|
T Consensus 181 LvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~----------------------------------- 224 (536)
T KOG2734|consen 181 LVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQG----------------------------------- 224 (536)
T ss_pred HHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhh-----------------------------------
Confidence 44433211 1111 11223344444 23333344444431
Q ss_pred hhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccc------cC-CchHHHHHH
Q psy12638 229 DYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEM------QE-DDEIVLQIL 300 (334)
Q Consensus 229 ~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~------~~-dde~vlqi~ 300 (334)
.+..|+.-+......+ .-+. .+...++.+-. ..+++.++..-++|..+++-+... +. +.|+.-+.-
T Consensus 225 -ll~WLL~rl~~k~~f~----aNk~-YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLF 298 (536)
T KOG2734|consen 225 -LLSWLLKRLKGKAAFD----ANKQ-YASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLF 298 (536)
T ss_pred -HHHHHHHHHhcccCcc----hhHH-HHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHH
Confidence 2222222111100000 0000 13333444444 344777788888888888876532 22 346666667
Q ss_pred HHHHHHHcCchhhHHHhhcCCcH
Q psy12638 301 YVFYQICRHASCQNYLIKETDAP 323 (334)
Q Consensus 301 ~~l~~l~~~~~~~~~i~~~~~i~ 323 (334)
-|+.++..++..++.++.++++-
T Consensus 299 dcLCs~lm~~~nr~~Fl~~EGlq 321 (536)
T KOG2734|consen 299 DCLCSLLMAPANRERFLKGEGLQ 321 (536)
T ss_pred HHHHHHhcChhhhhhhhccccHH
Confidence 78888889999999898876654
No 71
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.15 E-value=0.06 Score=42.77 Aligned_cols=64 Identities=13% Similarity=0.240 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc----CCchHHHHHHHHHHccCC-hhhhhHhhcc
Q psy12638 87 LQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE----EGKHQKIILQLLYHLSIE-DRVKAMFAYT 150 (334)
Q Consensus 87 l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~----~~~~~~~al~~L~~LS~~-~~~r~~i~~t 150 (334)
.+...++++.||++. +.+...+.+.|+||.+..... +|-.++.|+..+-||+.. ++++..|++-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 356678999999997 699999999999999999884 455799999999999875 7888888764
No 72
>KOG4413|consensus
Probab=94.89 E-value=2.4 Score=40.73 Aligned_cols=283 Identities=13% Similarity=0.177 Sum_probs=162.2
Q ss_pred cCCcceeecccCcchhH---HHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChh---H--
Q psy12638 33 RGNCNCYGLIVPKSKRE---GRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN---L-- 104 (334)
Q Consensus 33 r~~~~~~~~~~~~~~~~---A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~---~-- 104 (334)
|.|.+++..-..+-|+. -+++|++|=.-.+ ..-..-+..|.|-+=|..++..++-.|.+-+.-+-.|.+ +
T Consensus 43 qldpdifgfeNenhrekttlcVscLERLfkake--gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVse 120 (524)
T KOG4413|consen 43 QLDPDIFGFENENHREKTTLCVSCLERLFKAKE--GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSE 120 (524)
T ss_pred hcCCCCcccccccccchhhhHHHHHHHHHhhcc--chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHH
Confidence 45566665554444443 4667776622111 011122344455555666777888777777776666643 2
Q ss_pred HHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHH--HHHHhccCCCCchHHHHHHHHHHH-
Q psy12638 105 REKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSL--LMNMLLVEQDDETDNVLVALCINL- 179 (334)
Q Consensus 105 r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~--Lv~LL~~~~~~~~~~~~~~ll~nL- 179 (334)
-.-.|++|+.|.++.+++ +.+.-..|...+..+|..+..-+.|.+++.... ++.+-.. .++-.+-.+..+++-+
T Consensus 121 illvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaak-cndiaRvRVleLIieif 199 (524)
T KOG4413|consen 121 ILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAK-CNDIARVRVLELIIEIF 199 (524)
T ss_pred HHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhh-hhhHHHHHHHHHHHHHH
Confidence 233458999999999995 445677788999999999888888877765443 4444432 2334444566777776
Q ss_pred ccCcchHHHHHhcCchHHHHHHHhcCC-hHHH----HHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCccchhHHhhc
Q psy12638 180 ALNSRNAELMLKNRQLELLMIQAFTQK-NILL----LKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDENIKLECLG 252 (334)
Q Consensus 180 s~~~~n~~~i~~~~gl~~Lv~~l~~~~-d~~~----~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg 252 (334)
|..++.......+ |+--++..-.+|+ |.++ +.+...++.....++-. .+.|..+..+++-.+.+.+ |-+.
T Consensus 200 SiSpesaneckkS-GLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPf--ekfr 276 (524)
T KOG4413|consen 200 SISPESANECKKS-GLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPF--EKFR 276 (524)
T ss_pred hcCHHHHhHhhhh-hHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcH--HHHH
Confidence 5556666666665 5555555556664 4432 55677787766555432 2555555555543332221 1121
Q ss_pred HH-HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhc-cccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcH
Q psy12638 253 TL-EVINFIGTAASDPISAEHFCKNSTVDLLINLLK-EMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAP 323 (334)
Q Consensus 253 ~l-eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~-~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~ 323 (334)
.+ .....+|..+-.+-..+.+++. .+..+-.-+. ....|.+.+-..+-++|.|-.+.+.++.+.+ ++-|
T Consensus 277 almgfgkffgkeaimdvseeaicea-liiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllk-Tgpp 347 (524)
T KOG4413|consen 277 ALMGFGKFFGKEAIMDVSEEAICEA-LIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLK-TGPP 347 (524)
T ss_pred HHHHHHHHhcchHHhhcCHHHHHHH-HHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhc-cCCh
Confidence 11 2344555555432222233332 1222222222 1355778888889999999988888876554 5554
No 73
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.81 E-value=0.22 Score=46.06 Aligned_cols=188 Identities=14% Similarity=0.146 Sum_probs=117.4
Q ss_pred cCcchhHHHHHHHhcc-cchhhHHHh-HhCCcchHHHh-------hccCC-----ChhHHHHHHHHHHhhcCChhHHHHH
Q psy12638 43 VPKSKREGRQDSRKLS-VYHVNKEQM-ANLNLIEKLPR-------ILMIE-----DSNLQSSTLKLLFNLSFDTNLREKI 108 (334)
Q Consensus 43 ~~~~~~~A~~~L~~LS-i~~enk~~m-~~~g~I~~Lv~-------LL~~~-----~~~l~~~al~~L~NLS~d~~~r~~i 108 (334)
.|+.|++|+.-|.|-- .+++=...+ ..-|++..|++ .+..+ ...-.++|+.+|--++.|++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 4567778877775532 233322222 24577777654 33332 2367899999999999999999999
Q ss_pred HhcCChHHHHHhccCC-------chHHHHHHHHHHccC--ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHH-HHHH
Q psy12638 109 IKIGFLPKLVSLLEEG-------KHQKIILQLLYHLSI--EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA-LCIN 178 (334)
Q Consensus 109 v~~g~Ip~Lv~lL~~~-------~~~~~al~~L~~LS~--~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~-ll~n 178 (334)
.++.+.--|-++|+.. ..|-.++++...|.. |.+.-.-+-.|+.||.-.+.+..| ++..|.++. ++..
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQK 165 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 9999998999999521 235667888888865 445556667799999999999864 455565443 3446
Q ss_pred HccCcchHHHHHhc--------CchHHHHHHHhcCChHHH----HHHHHHHhcCCCchhhhhhhHH
Q psy12638 179 LALNSRNAELMLKN--------RQLELLMIQAFTQKNILL----LKVIRNMSIHSNVKHYFVDYIG 232 (334)
Q Consensus 179 Ls~~~~n~~~i~~~--------~gl~~Lv~~l~~~~d~~~----~k~l~nLa~~~~~~~~f~~~i~ 232 (334)
+-.|+..-.-+++. ..+..+|..+.+...+=+ +++--.||.|+..+..+..+++
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP 231 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLP 231 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 66676666555542 355566655555555533 3344467777665554333333
No 74
>KOG3678|consensus
Probab=94.78 E-value=0.34 Score=48.23 Aligned_cols=172 Identities=13% Similarity=0.182 Sum_probs=102.6
Q ss_pred hHHHHHHhcCChHHHHHhccCCch----HHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHH
Q psy12638 103 NLREKIIKIGFLPKLVSLLEEGKH----QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178 (334)
Q Consensus 103 ~~r~~iv~~g~Ip~Lv~lL~~~~~----~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~n 178 (334)
..+..|...|++..|++++..|+. +--|.++|-++-.. +||..+++-| ...++.+-......+.....+.++-|
T Consensus 171 ~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 171 GLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 567788889999999999987753 55577877776554 4888888765 44444443333344554555677778
Q ss_pred HccC-cchHHHHHhcCchHHHHHHHhcCChHHHHH----HHHHHhcCCCch-hh-h-----hhhHHHHHHHhhcCCccch
Q psy12638 179 LALN-SRNAELMLKNRQLELLMIQAFTQKNILLLK----VIRNMSIHSNVK-HY-F-----VDYIGDIANCVQKEKDENI 246 (334)
Q Consensus 179 Ls~~-~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k----~l~nLa~~~~~~-~~-f-----~~~i~~L~~~l~~~~~~~~ 246 (334)
+-.+ .+.++.+++.||+...+-.... .||-+++ .+.|++-|.... |. + .+|+=+|. .++ +++
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA----~sk-Del 322 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA----FSK-DEL 322 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh----cch-HHH
Confidence 8544 4568889999999988766444 4554433 477888776432 11 1 22222221 111 111
Q ss_pred hHHhhcHHHHHHHHHHhcCCcchHHHhhhCC---chHHHHHHhc
Q psy12638 247 KLECLGTLEVINFIGTAASDPISAEHFCKNS---TVDLLINLLK 287 (334)
Q Consensus 247 ~ve~Lg~leav~~lg~la~~~~~~~~l~~~g---~I~~Lv~LL~ 287 (334)
+ -+.|+.++++++.+.+....+.+.| +|++++.-+.
T Consensus 323 ~-----R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~D 361 (832)
T KOG3678|consen 323 L-----RLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLD 361 (832)
T ss_pred H-----HHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccC
Confidence 1 1146666677776666555555554 4455554444
No 75
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.50 E-value=0.04 Score=38.09 Aligned_cols=54 Identities=19% Similarity=0.097 Sum_probs=45.4
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhh
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNL 98 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NL 98 (334)
..|+.|...|..++........-....+++.|..+|.++++.++..|..+|.||
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 347788889988876666666667788999999999999999999999999886
No 76
>KOG2171|consensus
Probab=94.49 E-value=3.6 Score=45.08 Aligned_cols=273 Identities=12% Similarity=0.139 Sum_probs=143.5
Q ss_pred cCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChh-HHHHHHh-cCChHHHHHh
Q psy12638 43 VPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-LREKIIK-IGFLPKLVSL 120 (334)
Q Consensus 43 ~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~-~r~~iv~-~g~Ip~Lv~l 120 (334)
-++-|+-|+..|..+...-.|...=.=..+.+.+.+-+..+...++-.|++++.-.+...+ ++....+ ...+|+++..
T Consensus 131 ~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~v 210 (1075)
T KOG2171|consen 131 NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNV 210 (1075)
T ss_pred CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHH
Confidence 3456677788888777654444332112233444455566666699999999988886543 3333332 5788988887
Q ss_pred cc----CC--chHHHHHHHHHHccCCh--hhhhHhhccCcHHHHHHHhccCC-CCchHHHHHHHHHHHccCcchHHHHHh
Q psy12638 121 LE----EG--KHQKIILQLLYHLSIED--RVKAMFAYTNCMSLLMNMLLVEQ-DDETDNVLVALCINLALNSRNAELMLK 191 (334)
Q Consensus 121 L~----~~--~~~~~al~~L~~LS~~~--~~r~~i~~t~~i~~Lv~LL~~~~-~~~~~~~~~~ll~nLs~~~~n~~~i~~ 191 (334)
+. .+ +.-..++..|-.+...+ -.|..+.. .|..-.++..+.. ++..+..++.+++-++ +++..+++
T Consensus 211 l~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~---e~Ap~~~k 285 (1075)
T KOG2171|consen 211 LQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLS---EYAPAMCK 285 (1075)
T ss_pred hHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHH---HhhHHHhh
Confidence 73 22 22344566665554332 22333322 3333344443322 2233333333444333 33555554
Q ss_pred c--CchHHHHHHHhc----CC-h------------------HHHHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccch
Q psy12638 192 N--RQLELLMIQAFT----QK-N------------------ILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENI 246 (334)
Q Consensus 192 ~--~gl~~Lv~~l~~----~~-d------------------~~~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~ 246 (334)
- ...++|+-.+.. .. | -....++-.+|.+-+.++.+....+.+-.++.+.+...-
T Consensus 286 ~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R 365 (1075)
T KOG2171|consen 286 KLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKER 365 (1075)
T ss_pred hchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHH
Confidence 2 233333333222 00 0 123556667777766666655555555555554443222
Q ss_pred hHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCc--hHHHHHHHHHHHHHcCch-hhHHHhhcCCcH
Q psy12638 247 KLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD--EIVLQILYVFYQICRHAS-CQNYLIKETDAP 323 (334)
Q Consensus 247 ~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dd--e~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~ 323 (334)
. ++.+++|.++. .|.+.+.. -+|.+++..-.+-.|. .+...++.|+|+|+.+=. .-+.-. .+.+|
T Consensus 366 ~-------AaL~Als~i~E--Gc~~~m~~--~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~-~e~l~ 433 (1075)
T KOG2171|consen 366 H-------AALLALSVIAE--GCSDVMIG--NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH-HERLP 433 (1075)
T ss_pred H-------HHHHHHHHHHc--ccHHHHHH--HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH-HHhcc
Confidence 2 35678888874 34455544 3566655544444444 455566999999986544 332233 33566
Q ss_pred HHHHHhhhc
Q psy12638 324 AYMIDLLND 332 (334)
Q Consensus 324 ~~Li~LL~d 332 (334)
..|+..|.|
T Consensus 434 ~aL~~~ld~ 442 (1075)
T KOG2171|consen 434 PALIALLDS 442 (1075)
T ss_pred HHHHHHhcc
Confidence 577776655
No 77
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.84 E-value=0.62 Score=43.10 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=111.5
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCC-----hhHHHHHHHHHHhhcC--ChhHHHHHHhcCChHHHHHhc
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIED-----SNLQSSTLKLLFNLSF--DTNLREKIIKIGFLPKLVSLL 121 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~-----~~l~~~al~~L~NLS~--d~~~r~~iv~~g~Ip~Lv~lL 121 (334)
.|+..|+-.+.+++.|....++.+.-.|..+|...+ +.++-.++..++-|.. |+++-.-+.+.++||.-.+.+
T Consensus 69 naLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m 148 (262)
T PF04078_consen 69 NALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM 148 (262)
T ss_dssp HHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence 678888999999999999999999999999986543 3678889999999988 468888888999999999999
Q ss_pred c--CCchHHHHHHHHHHccCChhhhhHhhccC--------cHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHh
Q psy12638 122 E--EGKHQKIILQLLYHLSIEDRVKAMFAYTN--------CMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK 191 (334)
Q Consensus 122 ~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~--------~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~ 191 (334)
. ++-.+-.|..+++.+=.||.+-.-+.+|. .+..++.-+...++..+-+..+..-.-||.+++.++++..
T Consensus 149 e~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 149 EFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4 55567789999999988888877776653 3445555555556667766666666688999999998885
Q ss_pred cCchHH
Q psy12638 192 NRQLEL 197 (334)
Q Consensus 192 ~~gl~~ 197 (334)
++|.
T Consensus 229 --~LP~ 232 (262)
T PF04078_consen 229 --CLPD 232 (262)
T ss_dssp --HS-G
T ss_pred --hCcH
Confidence 4554
No 78
>KOG3678|consensus
Probab=93.81 E-value=1.4 Score=43.98 Aligned_cols=197 Identities=12% Similarity=0.080 Sum_probs=122.4
Q ss_pred cCCcceee--cccCc----chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhcc-CCChhHHHHHHHHHHhhcCCh-hH
Q psy12638 33 RGNCNCYG--LIVPK----SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILM-IEDSNLQSSTLKLLFNLSFDT-NL 104 (334)
Q Consensus 33 r~~~~~~~--~~~~~----~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~-~~~~~l~~~al~~L~NLS~d~-~~ 104 (334)
++++++++ ...|+ -|-+|.+.|+..- ..+|++.+...| ...++.+.+ .+..++....+.+|.||=.+. +.
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet 256 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEET 256 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence 55666554 22332 2558888887753 378999999887 555555443 345588999999999999884 89
Q ss_pred HHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCC--hhhhhHhhccCcHHHHHHHhccCCCCchHHH-HHHHHHHH
Q psy12638 105 REKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNV-LVALCINL 179 (334)
Q Consensus 105 r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~--~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~-~~~ll~nL 179 (334)
+..++..|+|..++--.+ +|.+...|+-.|.|...+ .+.+..|.+..+-++|.-+-.+ .++-..-. +++++ -|
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s-kDel~R~~AClAV~-vl 334 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS-KDELLRLHACLAVA-VL 334 (832)
T ss_pred HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc-hHHHHHHHHHHHHh-hh
Confidence 999999999998877774 566544444458898876 4678888888888888877654 33322221 12222 34
Q ss_pred ccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhh-hhhhHHHHHHHhh
Q psy12638 180 ALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHY-FVDYIGDIANCVQ 239 (334)
Q Consensus 180 s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~-f~~~i~~L~~~l~ 239 (334)
+.+.+.-..+.++ |--.||+.+...-||--+ .|--+. ..|- -.+++..|+-++.
T Consensus 335 at~KE~E~~VrkS-~TlaLVEPlva~~DP~~F--ARD~hd---~aQG~~~d~LqRLvPlLd 389 (832)
T KOG3678|consen 335 ATNKEVEREVRKS-GTLALVEPLVASLDPGRF--ARDAHD---YAQGRGPDDLQRLVPLLD 389 (832)
T ss_pred hhhhhhhHHHhhc-cchhhhhhhhhccCcchh--hhhhhh---hhccCChHHHHHhhhhhh
Confidence 5565555555555 444455555544444211 111110 1111 2467777777664
No 79
>KOG3036|consensus
Probab=93.76 E-value=1.2 Score=41.05 Aligned_cols=143 Identities=10% Similarity=0.062 Sum_probs=112.3
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhcc-----CCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhc
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILM-----IEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLL 121 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~-----~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL 121 (334)
.|+..|+-.+.+++.|....++-+--.|..+|. ++.+-++-.++..+.-|..+ +++-..+...++||..++.+
T Consensus 98 naL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim 177 (293)
T KOG3036|consen 98 NALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM 177 (293)
T ss_pred HHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence 788888999999999999999988777777773 35667899999999999975 48888899999999999999
Q ss_pred c--CCchHHHHHHHHHHccCChhhhhHhhcc--------CcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHh
Q psy12638 122 E--EGKHQKIILQLLYHLSIEDRVKAMFAYT--------NCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK 191 (334)
Q Consensus 122 ~--~~~~~~~al~~L~~LS~~~~~r~~i~~t--------~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~ 191 (334)
. ++..+-.|+.++-.+=.||.+-.-|.+| ..+..++.-+.+.+...+-+.+++...+|+-+++-+.+...
T Consensus 178 e~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 178 ESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS 257 (293)
T ss_pred hcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4 5566788888888887777665555443 13445555555667777778888888899999988887764
No 80
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.33 Score=49.04 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=98.9
Q ss_pred HHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhccCCc--
Q psy12638 51 RQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLEEGK-- 125 (334)
Q Consensus 51 ~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~~~~-- 125 (334)
.....++-+ +..=+..+.+.|+|..|++++.+++..++.++.-.|.-|.++. +.+-+....-+..+++++.++|.
T Consensus 452 t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~ 531 (743)
T COG5369 452 TIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFK 531 (743)
T ss_pred hhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccc
Confidence 444444443 5667888999999999999999999999999999999999975 44667778888899999999985
Q ss_pred hHHHHHHHHHHccCC----hhhhhHhhccCcHH----HHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHH
Q psy12638 126 HQKIILQLLYHLSIE----DRVKAMFAYTNCMS----LLMNMLLVEQDDETDNVLVALCINLALNSRNAELML 190 (334)
Q Consensus 126 ~~~~al~~L~~LS~~----~~~r~~i~~t~~i~----~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~ 190 (334)
.|+.++.+|.|+.++ ++.+..+-+..-.. .|++.+.....-+. .+-.-.++|++.++++...++
T Consensus 532 vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i-~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 532 VQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI-LEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred cHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh-hhhHHHHHHHHhccchHHHHH
Confidence 588999999999875 34455554443333 34444443222222 223456677777777655555
No 81
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.25 E-value=5.8 Score=43.39 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=40.9
Q ss_pred hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--
Q psy12638 47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG-- 124 (334)
Q Consensus 47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~-- 124 (334)
|..|+..|.++... ....+.|...|.++++.++..|+..|..+.. +-.+.+++.|+++
T Consensus 669 R~~Aa~aL~~l~~~---------~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~ 728 (897)
T PRK13800 669 RRAAAEGLRELVEV---------LPPAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDH 728 (897)
T ss_pred HHHHHHHHHHHHhc---------cCchHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCH
Confidence 44666777665211 1123567778888888888888888877642 1123445555433
Q ss_pred chHHHHHHHHHHc
Q psy12638 125 KHQKIILQLLYHL 137 (334)
Q Consensus 125 ~~~~~al~~L~~L 137 (334)
..|..|+..|..+
T Consensus 729 ~VR~~Av~aL~~~ 741 (897)
T PRK13800 729 RVRIEAVRALVSV 741 (897)
T ss_pred HHHHHHHHHHhcc
Confidence 3455555555543
No 82
>KOG4464|consensus
Probab=93.03 E-value=0.72 Score=45.21 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=114.0
Q ss_pred CChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhcc------CC-chHHHHHHHHHHccCC-hhhhhHhh-ccCc
Q psy12638 83 EDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLE------EG-KHQKIILQLLYHLSIE-DRVKAMFA-YTNC 152 (334)
Q Consensus 83 ~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~------~~-~~~~~al~~L~~LS~~-~~~r~~i~-~t~~ 152 (334)
.+.++.-.|+++|+|+.|+. ..|....+.....++.+.+. .| ..+..-+++|+-|+.- ...|..+. +.+|
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 34688889999999999985 88888889988888888772 12 3455667878877654 46677664 4689
Q ss_pred HHHHHHHhccCCC--------C------chHHHHHHHHHHHccCcchHHHHHhc-------CchHHHHHHHhcCC-----
Q psy12638 153 MSLLMNMLLVEQD--------D------ETDNVLVALCINLALNSRNAELMLKN-------RQLELLMIQAFTQK----- 206 (334)
Q Consensus 153 i~~Lv~LL~~~~~--------~------~~~~~~~~ll~nLs~~~~n~~~i~~~-------~gl~~Lv~~l~~~~----- 206 (334)
++.+.+.+...-+ + +...|++.++.|++.++.-....-+. +.+...+..+ ...
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~v-T~~~~~~e 267 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIV-TLRDSTEE 267 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhc-cccchHHH
Confidence 9999998853211 1 11125667778987665432211110 1111111111 111
Q ss_pred ---------hHHHHHHHHHHhcCCCc---hhhhh-------hhHHHHHHHhhcC-Cc----cchhHHhhcHHHHHHHHHH
Q psy12638 207 ---------NILLLKVIRNMSIHSNV---KHYFV-------DYIGDIANCVQKE-KD----ENIKLECLGTLEVINFIGT 262 (334)
Q Consensus 207 ---------d~~~~k~l~nLa~~~~~---~~~f~-------~~i~~L~~~l~~~-~~----~~~~ve~Lg~leav~~lg~ 262 (334)
+.+..+++-.++...+. .|.|. +.|-.++.....+ +. .+.+-..+ ..+..
T Consensus 268 lhshav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvl------sVL~~ 341 (532)
T KOG4464|consen 268 LHSHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVL------SVLTE 341 (532)
T ss_pred HhhccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHH------HHHHH
Confidence 01224445555554432 23342 2333333222111 11 12322333 34588
Q ss_pred hcCCcchHHHhhhCCchHHHHHHhcc
Q psy12638 263 AASDPISAEHFCKNSTVDLLINLLKE 288 (334)
Q Consensus 263 la~~~~~~~~l~~~g~I~~Lv~LL~~ 288 (334)
+|+++.....+.+..++|||.+.-+-
T Consensus 342 car~~R~~Rkylr~qVLPPLrDV~~R 367 (532)
T KOG4464|consen 342 CARSHRVMRKYLRQQVLPPLRDVSQR 367 (532)
T ss_pred HHhhhHHHHHHHHHhcCCchhhhhcC
Confidence 88887777777777899999987753
No 83
>KOG1824|consensus
Probab=92.09 E-value=1.3 Score=47.68 Aligned_cols=231 Identities=13% Similarity=0.137 Sum_probs=109.4
Q ss_pred CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHH-Hhcc-CCchHHH-HHHHHHHccCChhhhhH
Q psy12638 70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLV-SLLE-EGKHQKI-ILQLLYHLSIEDRVKAM 146 (334)
Q Consensus 70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv-~lL~-~~~~~~~-al~~L~~LS~~~~~r~~ 146 (334)
..++..++++|+..+.++|+.|+++|.-|+.- +++.=++. .+..|. .++. .+..+.. ++++..-.+.-......
T Consensus 46 ~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK--vke~~le~-~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~ 122 (1233)
T KOG1824|consen 46 RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK--VKEDQLET-IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSS 122 (1233)
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh--chHHHHHH-HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccc
Confidence 45788899999999999999999999999943 22221111 112222 2222 2222222 34444444444433333
Q ss_pred hhccCcHHH----HHHHhcc-CCCCchHHHHHHHHHHH-ccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcC
Q psy12638 147 FAYTNCMSL----LMNMLLV-EQDDETDNVLVALCINL-ALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIH 220 (334)
Q Consensus 147 i~~t~~i~~----Lv~LL~~-~~~~~~~~~~~~ll~nL-s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~ 220 (334)
+.-+...+. +..-+.. ++...+..++.-++... +.-..-...+.. +.+.-++..+...+..+--|.+..++.-
T Consensus 123 ~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~-~il~~l~~ql~s~R~aVrKkai~~l~~l 201 (1233)
T KOG1824|consen 123 FLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHL-SILKCLLPQLQSPRLAVRKKAITALGHL 201 (1233)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHH-HHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 333333333 3333321 11222222222222111 111111111111 2333333333333444444444444433
Q ss_pred CC--chhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcccc-CCchHHH
Q psy12638 221 SN--VKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQ-EDDEIVL 297 (334)
Q Consensus 221 ~~--~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~-~dde~vl 297 (334)
.. ++-.|.+.+..|.+-+..... . +.+.+ -+.++|++++....+.-=.-..++|.+.+-.+.-+ +|||.--
T Consensus 202 a~~~~~~ly~~li~~Ll~~L~~~~q-~---~~~rt--~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE 275 (1233)
T KOG1824|consen 202 ASSCNRDLYVELIEHLLKGLSNRTQ-M---SATRT--YIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELRE 275 (1233)
T ss_pred HHhcCHHHHHHHHHHHHhccCCCCc-h---HHHHH--HHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHH
Confidence 22 223367778888777755421 1 11111 36677888765442221122357888888886544 5555555
Q ss_pred HHHHHHHHHHcCc
Q psy12638 298 QILYVFYQICRHA 310 (334)
Q Consensus 298 qi~~~l~~l~~~~ 310 (334)
-.+-+|+.++...
T Consensus 276 ~~lQale~fl~rc 288 (1233)
T KOG1824|consen 276 YCLQALESFLRRC 288 (1233)
T ss_pred HHHHHHHHHHHhC
Confidence 5577777776443
No 84
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.98 E-value=0.41 Score=37.63 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=54.6
Q ss_pred HHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHHhccCCch-
Q psy12638 50 GRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK--IGFLPKLVSLLEEGKH- 126 (334)
Q Consensus 50 A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~--~g~Ip~Lv~lL~~~~~- 126 (334)
++-.|...++.-.....-.-.-++++++..+..++..++..|..+|+|++.. .|.++.. ..+++.|.+++.+++.
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~--~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV--ARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 3444444444333334444456899999999999999999999999999964 3445542 5566667777765542
Q ss_pred HHHHHHHHHH
Q psy12638 127 QKIILQLLYH 136 (334)
Q Consensus 127 ~~~al~~L~~ 136 (334)
-..++.+|-+
T Consensus 84 Vr~~a~~Ld~ 93 (97)
T PF12755_consen 84 VRSAAELLDR 93 (97)
T ss_pred HHHHHHHHHH
Confidence 2234444443
No 85
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.76 E-value=3.6 Score=42.23 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=47.0
Q ss_pred chHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccCCh
Q psy12638 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIED 141 (334)
Q Consensus 73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~ 141 (334)
.|.|-.+++++-+-+.-.++++.+.+|.-. +-.+.+. ..|..|-.+|+++. .|..|+++|-.||+..
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 455556777777888888889999888633 2333332 24566777777664 5888999999998754
No 86
>KOG0212|consensus
Probab=91.47 E-value=6.5 Score=40.24 Aligned_cols=110 Identities=21% Similarity=0.284 Sum_probs=73.2
Q ss_pred ccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhc----------------------CChh------------
Q psy12638 58 SVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLS----------------------FDTN------------ 103 (334)
Q Consensus 58 Si~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS----------------------~d~~------------ 103 (334)
++--.+++...-.++++|.+.-+...+.+++..|...|+|.+ -|++
T Consensus 71 ~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdR 150 (675)
T KOG0212|consen 71 AIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDR 150 (675)
T ss_pred HHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHH
Confidence 333344554567788999999888888888887777777765 2211
Q ss_pred HHHHHHhcCC----hHHHHHhcc------CCchHHHHHHHHHHccCChhhhhHhhccC-cHHHHHHHhccCCCCchH
Q psy12638 104 LREKIIKIGF----LPKLVSLLE------EGKHQKIILQLLYHLSIEDRVKAMFAYTN-CMSLLMNMLLVEQDDETD 169 (334)
Q Consensus 104 ~r~~iv~~g~----Ip~Lv~lL~------~~~~~~~al~~L~~LS~~~~~r~~i~~t~-~i~~Lv~LL~~~~~~~~~ 169 (334)
..+.||-... +|.++++|+ +|..|...+.-|+.|=.-+ .+++|.+.. -.+-|..+|.. +.+++.
T Consensus 151 LikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD-~s~eVr 225 (675)
T KOG0212|consen 151 LIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSD-SSDEVR 225 (675)
T ss_pred HHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcC-CcHHHH
Confidence 2344443333 677777773 5667887888888885554 578888865 56778889863 455544
No 87
>KOG2023|consensus
Probab=90.78 E-value=5.5 Score=41.59 Aligned_cols=163 Identities=13% Similarity=0.216 Sum_probs=83.6
Q ss_pred chHHHhhccCCChhHHHHHHHHHHhhcCChh-H-HHHHHh---cCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhh
Q psy12638 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-L-REKIIK---IGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKA 145 (334)
Q Consensus 73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~-~-r~~iv~---~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~ 145 (334)
+|.|..+|.+++....+-|+.+|-..+.|.. . -...-. .-.||++..+.+ +|..|..|++-+-..=... +..
T Consensus 130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~qa 208 (885)
T KOG2023|consen 130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQA 208 (885)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-cHH
Confidence 4568889999999999999999999998852 2 111111 236899999996 4566766665333222211 222
Q ss_pred HhhccC-cHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhc-CchHHHHHHHhcCChHHHHHH---HHHHhcC
Q psy12638 146 MFAYTN-CMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKN-RQLELLMIQAFTQKNILLLKV---IRNMSIH 220 (334)
Q Consensus 146 ~i~~t~-~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~-~gl~~Lv~~l~~~~d~~~~k~---l~nLa~~ 220 (334)
.+..-+ -++.+..+- +.+++++++.+-..++-|. +-+--..+-.- +.++-.+.+....++.+++.. -..+|..
T Consensus 209 l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Ll-evr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 209 LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLL-EVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHH-HhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 222222 233444443 4566666665444333331 11111111111 233333344333344444432 4456665
Q ss_pred CCchhhhhhhHHHHHHHh
Q psy12638 221 SNVKHYFVDYIGDIANCV 238 (334)
Q Consensus 221 ~~~~~~f~~~i~~L~~~l 238 (334)
+-.+....+++.+|+-++
T Consensus 287 pi~~~~L~p~l~kliPvL 304 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVL 304 (885)
T ss_pred cCcHHHHHHHHHHHHHHH
Confidence 533333445555555443
No 88
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.56 E-value=0.41 Score=35.79 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=49.3
Q ss_pred hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc-
Q psy12638 47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK- 125 (334)
Q Consensus 47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~- 125 (334)
|..|+..|.++- ...+++.|.+++.+++..++..|+..|..+. ...++|.|.+++.++.
T Consensus 17 r~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~~~~~~~L~~~l~~~~~ 76 (88)
T PF13646_consen 17 RAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------DPEAIPALIKLLQDDDD 76 (88)
T ss_dssp HHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------HHHTHHHHHHHHTC-SS
T ss_pred HHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHcCCCc
Confidence 445666666431 1256999999999999999999999999883 3448999999996432
Q ss_pred --hHHHHHHHH
Q psy12638 126 --HQKIILQLL 134 (334)
Q Consensus 126 --~~~~al~~L 134 (334)
.+..|+..|
T Consensus 77 ~~vr~~a~~aL 87 (88)
T PF13646_consen 77 EVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 355566544
No 89
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.54 E-value=1.2 Score=41.26 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=55.4
Q ss_pred hhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy12638 229 DYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQIC 307 (334)
Q Consensus 229 ~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~ 307 (334)
.++..+++++.........+.+|.++ +..+..+|.+...|.+.+++..++.+++.++.++++.+.++..++-.+
T Consensus 133 ~~m~lll~LL~~~~~~~i~~a~L~tL-----v~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 133 QNMELLLDLLSPSNPPAIQSACLDTL-----VCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred hhHHHHHHHhccCCCchHHHHHHHHH-----HHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHH
Confidence 45555666664333345555554444 455667888889999999999999999999999999999988877776
No 90
>KOG1059|consensus
Probab=90.22 E-value=3.3 Score=43.42 Aligned_cols=126 Identities=20% Similarity=0.274 Sum_probs=78.4
Q ss_pred HHHHHhccC--CchHHHHHHHHHHccCC--hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHH
Q psy12638 115 PKLVSLLEE--GKHQKIILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELM 189 (334)
Q Consensus 115 p~Lv~lL~~--~~~~~~al~~L~~LS~~--~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i 189 (334)
+-++-+|++ |=.|..|+.+||.+..- +..| .|+|.|++=|. .+++.++..+..+.+-|| .+|+|.-.+
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr------~~FprL~EkLe-DpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR------PCFPRLVEKLE-DPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh------hhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 344555543 33577788888877542 2222 37799999997 478888887777777774 677776544
Q ss_pred HhcCchHHHHHHHhcCChHH-HHHH---HHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHH
Q psy12638 190 LKNRQLELLMIQAFTQKNIL-LLKV---IRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTL 254 (334)
Q Consensus 190 ~~~~gl~~Lv~~l~~~~d~~-~~k~---l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~l 254 (334)
+ |.+.+++.+++..| ++|+ ..+|+--++-. -.+.+++|..++.+-..-.++.||+.+.
T Consensus 220 A-----P~ffkllttSsNNWmLIKiiKLF~aLtplEPRL--gKKLieplt~li~sT~AmSLlYECvNTV 281 (877)
T KOG1059|consen 220 A-----PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL--GKKLIEPITELMESTVAMSLLYECVNTV 281 (877)
T ss_pred c-----HHHHHHHhccCCCeehHHHHHHHhhccccCchh--hhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3 45666666666665 4454 44555444321 2356777777765444456777887665
No 91
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=90.22 E-value=2.5 Score=42.45 Aligned_cols=76 Identities=13% Similarity=0.033 Sum_probs=57.2
Q ss_pred HHHHHHHccCChhhhhHhhccCcHHHHHHHh---------ccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHH
Q psy12638 130 ILQLLYHLSIEDRVKAMFAYTNCMSLLMNML---------LVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLM 199 (334)
Q Consensus 130 al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL---------~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv 199 (334)
|+..|.-||.|..+-..+...+++..|.++- ...++..+..+++..+.|+-+. +..++.+++.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3556777888888888887777888887776 4445667777888999998555 45577777888889888
Q ss_pred HHHhcC
Q psy12638 200 IQAFTQ 205 (334)
Q Consensus 200 ~~l~~~ 205 (334)
+++.+.
T Consensus 81 ~~Lk~~ 86 (446)
T PF10165_consen 81 ERLKNY 86 (446)
T ss_pred HHHHcc
Confidence 887764
No 92
>KOG1060|consensus
Probab=90.09 E-value=2.9 Score=44.28 Aligned_cols=166 Identities=17% Similarity=0.284 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHH-Hh
Q psy12638 126 HQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQ-AF 203 (334)
Q Consensus 126 ~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~-l~ 203 (334)
.--.++.++|+|+--.+. +..+.+|+.+|.+.. .++. .++.|.+.- .+... -|.|.++- -+
T Consensus 303 VVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~--~vqy---vvL~nIa~~s~~~~~------lF~P~lKsFfv 365 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNR--EVQY---VVLQNIATISIKRPT------LFEPHLKSFFV 365 (968)
T ss_pred HHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCC--cchh---hhHHHHHHHHhcchh------hhhhhhhceEe
Confidence 344577888888765422 224678999997533 3322 244454322 22222 23333322 23
Q ss_pred cCChHHH-----HHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhhCC
Q psy12638 204 TQKNILL-----LKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCKNS 277 (334)
Q Consensus 204 ~~~d~~~-----~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~~g 277 (334)
.+.||.. +.++.||+....-.+ .+..+-.-+...+. ++ +. .+|.+||.+|.. ..+...
T Consensus 366 ~ssDp~~vk~lKleiLs~La~esni~~----ILrE~q~YI~s~d~-~f-aa-----~aV~AiGrCA~~~~sv~~t----- 429 (968)
T KOG1060|consen 366 RSSDPTQVKILKLEILSNLANESNISE----ILRELQTYIKSSDR-SF-AA-----AAVKAIGRCASRIGSVTDT----- 429 (968)
T ss_pred ecCCHHHHHHHHHHHHHHHhhhccHHH----HHHHHHHHHhcCch-hH-HH-----HHHHHHHHHHHhhCchhhH-----
Confidence 4567643 445778875432111 12222223333332 22 22 278899999884 333333
Q ss_pred chHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhh
Q psy12638 278 TVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331 (334)
Q Consensus 278 ~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~ 331 (334)
...+|+.+++++ |.-++.+.+.++-.|...++.+. ..++.+|-+||.
T Consensus 430 CL~gLv~Llssh--de~Vv~eaV~vIk~Llq~~p~~h-----~~ii~~La~lld 476 (968)
T KOG1060|consen 430 CLNGLVQLLSSH--DELVVAEAVVVIKRLLQKDPAEH-----LEILFQLARLLD 476 (968)
T ss_pred HHHHHHHHHhcc--cchhHHHHHHHHHHHHhhChHHH-----HHHHHHHHHHhh
Confidence 678999999854 66888899999999986666553 124446666653
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=89.95 E-value=21 Score=35.02 Aligned_cols=163 Identities=14% Similarity=0.162 Sum_probs=110.9
Q ss_pred chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc----CCchHHHHHHHHH
Q psy12638 60 YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE----EGKHQKIILQLLY 135 (334)
Q Consensus 60 ~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~----~~~~~~~al~~L~ 135 (334)
+++-|..+.-.-..+.+..++=+++.+++..+.+++--+-.|.+.-..+.+.++=--++..|. ++..++.|+++..
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR 93 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIR 93 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHH
Confidence 454555555555666666555555699999999999999999999999999986666667773 2345778999877
Q ss_pred HccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHH---HHH
Q psy12638 136 HLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNIL---LLK 212 (334)
Q Consensus 136 ~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k 212 (334)
.+-..+.+...| ..+.+..++.+... +++.....+++.+.=++. .+-+.+++.||+..|++.+.++.-.. ++.
T Consensus 94 ~~l~~~~~~~~~-~~~vvralvaiae~-~~D~lr~~cletL~El~l--~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~ 169 (371)
T PF14664_consen 94 AFLEIKKGPKEI-PRGVVRALVAIAEH-EDDRLRRICLETLCELAL--LNPELVAECGGIRVLLRALIDGSFSISESLLD 169 (371)
T ss_pred HHHHhcCCcccC-CHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHh--hCHHHHHHcCCHHHHHHHHHhccHhHHHHHHH
Confidence 665543332223 33456778888865 566666655555544432 35677889999999999999865432 344
Q ss_pred HHHHHhcCCCchhh
Q psy12638 213 VIRNMSIHSNVKHY 226 (334)
Q Consensus 213 ~l~nLa~~~~~~~~ 226 (334)
++-.+-.++..++.
T Consensus 170 ~lL~lLd~p~tR~y 183 (371)
T PF14664_consen 170 TLLYLLDSPRTRKY 183 (371)
T ss_pred HHHHHhCCcchhhh
Confidence 55566666666664
No 94
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=89.83 E-value=3 Score=36.94 Aligned_cols=81 Identities=14% Similarity=0.055 Sum_probs=59.2
Q ss_pred hCCcchHHHhhccC------CChhHHHHHHHHHHhhcCChhHHHHHHhc--CC--hHHHHHhcc--CCchHHHHHHHHHH
Q psy12638 69 NLNLIEKLPRILMI------EDSNLQSSTLKLLFNLSFDTNLREKIIKI--GF--LPKLVSLLE--EGKHQKIILQLLYH 136 (334)
Q Consensus 69 ~~g~I~~Lv~LL~~------~~~~l~~~al~~L~NLS~d~~~r~~iv~~--g~--Ip~Lv~lL~--~~~~~~~al~~L~~ 136 (334)
+...+..|+..+.. ....-......+|.|+|..++.|.-+.+. +. |.+|+.++. +..-|.-+++++.|
T Consensus 50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrN 129 (192)
T PF04063_consen 50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRN 129 (192)
T ss_pred hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 33466777777655 22345667778999999999999999963 44 677777775 34457779999999
Q ss_pred ccCChhhhhHhhc
Q psy12638 137 LSIEDRVKAMFAY 149 (334)
Q Consensus 137 LS~~~~~r~~i~~ 149 (334)
+|++.+.-..+-.
T Consensus 130 ccFd~~~H~~LL~ 142 (192)
T PF04063_consen 130 CCFDTDSHEWLLS 142 (192)
T ss_pred hhccHhHHHHhcC
Confidence 9999866555544
No 95
>KOG3036|consensus
Probab=89.81 E-value=6.8 Score=36.17 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC-----C--chHHHHHHHHHHccCC--hhhhhHhhccCcH
Q psy12638 83 EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE-----G--KHQKIILQLLYHLSIE--DRVKAMFAYTNCM 153 (334)
Q Consensus 83 ~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~-----~--~~~~~al~~L~~LS~~--~~~r~~i~~t~~i 153 (334)
.+..-.++|+.+|--++.+++.|..++++.+=-.|-++|.. + -.|-.++++...|-.. .+.-...-.|+.|
T Consensus 91 ~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 91 AQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 34567899999999999999999999999875577788842 1 2466788888888553 3444444668999
Q ss_pred HHHHHHhccCCCCchHHHHHHH-HHHHccCcchHHHHHhc--------CchHHHHHHHhcCChHHHHH----HHHHHhcC
Q psy12638 154 SLLMNMLLVEQDDETDNVLVAL-CINLALNSRNAELMLKN--------RQLELLMIQAFTQKNILLLK----VIRNMSIH 220 (334)
Q Consensus 154 ~~Lv~LL~~~~~~~~~~~~~~l-l~nLs~~~~n~~~i~~~--------~gl~~Lv~~l~~~~d~~~~k----~l~nLa~~ 220 (334)
|..++.+..|+ +.-+.++.. +-..-.|+..-.-+++. ..+..++..+.+..++-++| +--+|+.+
T Consensus 171 PlCLrime~GS--elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 171 PLCLRIMESGS--ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHhccc--HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 99999998753 444444333 33456677666666642 24455555555555554433 34456655
Q ss_pred C
Q psy12638 221 S 221 (334)
Q Consensus 221 ~ 221 (334)
+
T Consensus 249 p 249 (293)
T KOG3036|consen 249 P 249 (293)
T ss_pred H
Confidence 4
No 96
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=89.06 E-value=0.67 Score=31.78 Aligned_cols=52 Identities=17% Similarity=0.092 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHc
Q psy12638 86 NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHL 137 (334)
Q Consensus 86 ~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~L 137 (334)
.++..|+.+|.++++.......-....++|.|+.+|+++ ..|..|+..|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578899999999998754444446678999999999644 4677777777654
No 97
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.01 E-value=0.33 Score=29.52 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=25.3
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcC
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSF 100 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~ 100 (334)
++|.+.+++.+++++++..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999998874
No 98
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=88.92 E-value=1.8 Score=34.41 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=55.1
Q ss_pred hhHHHHHHHhccc-chhhHHHhHhCCcchHHHhh--ccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcC
Q psy12638 47 KREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRI--LMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIG 112 (334)
Q Consensus 47 ~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~L--L~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g 112 (334)
|++-++.+.+|+- .+++.+.+.+.|.||.++.. .+..++-+++.|+-++-||... ++++..|.+..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 6677788888884 68899999999999999874 3556778999999999999987 58888887654
No 99
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.89 E-value=0.83 Score=41.82 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=62.6
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcch-------HHHhhccC-CChhHHHHHHHHHHhhcCCh-hH-HHHHHhcCCh
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIE-------KLPRILMI-EDSNLQSSTLKLLFNLSFDT-NL-REKIIKIGFL 114 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~-------~Lv~LL~~-~~~~l~~~al~~L~NLS~d~-~~-r~~iv~~g~I 114 (334)
+-|+-|+-.|.|||+.+.|-+-+...+=-+ .|++++.. ++...++.|+-+|.||+.-+ .. |..-.+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 457799999999999999999887766444 35555544 56778999999999999854 44 4444579999
Q ss_pred HHHHHhccCCc
Q psy12638 115 PKLVSLLEEGK 125 (334)
Q Consensus 115 p~Lv~lL~~~~ 125 (334)
..|+.++.+.+
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999996543
No 100
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=88.82 E-value=11 Score=37.54 Aligned_cols=80 Identities=19% Similarity=0.044 Sum_probs=40.0
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCChhhhhHhhc
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIEDRVKAMFAY 149 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~~~~r~~i~~ 149 (334)
..+.|+.+|.++++.++..++.++.. ......+.+..+|++ +..+..|+..|..+...
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--------- 177 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR--------- 177 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---------
Confidence 34445555555555555555544444 112234566666643 33455566655554432
Q ss_pred cCcHHHHHHHhccCCCCchHHHHH
Q psy12638 150 TNCMSLLMNMLLVEQDDETDNVLV 173 (334)
Q Consensus 150 t~~i~~Lv~LL~~~~~~~~~~~~~ 173 (334)
+++|.|...+. +.++.+...++
T Consensus 178 -~a~~~L~~al~-d~~~~VR~aA~ 199 (410)
T TIGR02270 178 -LSESTLRLYLR-DSDPEVRFAAL 199 (410)
T ss_pred -cchHHHHHHHc-CCCHHHHHHHH
Confidence 26666666654 35555544433
No 101
>KOG1061|consensus
Probab=87.50 E-value=1.6 Score=45.79 Aligned_cols=49 Identities=27% Similarity=0.368 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCC-cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch
Q psy12638 255 EVINFIGTAASD-PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS 311 (334)
Q Consensus 255 eav~~lg~la~~-~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~ 311 (334)
++|.++|.+|.- .++ ++.|+.|.++++.+++ -++..++.+++.+.++-+
T Consensus 369 kaIraig~~aik~e~~------~~cv~~lLell~~~~~--yvvqE~~vvi~dilRkyP 418 (734)
T KOG1061|consen 369 KAVRAIGRLAIKAEQS------NDCVSILLELLETKVD--YVVQEAIVVIRDILRKYP 418 (734)
T ss_pred HHHHHhhhhhhhhhhh------hhhHHHHHHHHhhccc--ceeeehhHHHHhhhhcCC
Confidence 789999999973 332 5689999999987663 344445666666664443
No 102
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=87.13 E-value=2.5 Score=39.14 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=65.7
Q ss_pred HHHHHHHhcc-cchhhHHHhHhCCcchHHHhhc-cCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccCCc
Q psy12638 49 EGRQDSRKLS-VYHVNKEQMANLNLIEKLPRIL-MIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEEGK 125 (334)
Q Consensus 49 ~A~~~L~~LS-i~~enk~~m~~~g~I~~Lv~LL-~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~~~ 125 (334)
.|+..|+=+. .++..|....+...++.++.+| ++....++..++.+|..+-.| +.|-..+.+.|++..+++++++..
T Consensus 110 ~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~ 189 (257)
T PF08045_consen 110 LALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKS 189 (257)
T ss_pred HHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcccc
Confidence 4667777777 5788999999999999999999 556788899999888877776 699999999999999999997543
No 103
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=86.32 E-value=2.9 Score=37.31 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=77.1
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc--cCCch
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL--EEGKH 126 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL--~~~~~ 126 (334)
.|..++..++....+.-.-.-..++|.|++.+.++...+.+.|..+|..+......-..++ ++.+.... +++..
T Consensus 72 ~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~Kn~~v 147 (228)
T PF12348_consen 72 TACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSKNPQV 147 (228)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S-HHH
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCCCHHH
Confidence 7777788877655554444456788999999999999999999999999987654222221 34455555 36677
Q ss_pred HHHHHHHHHHccCChh-hhhHhhcc----CcHHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638 127 QKIILQLLYHLSIEDR-VKAMFAYT----NCMSLLMNMLLVEQDDETDNVLVALCINL 179 (334)
Q Consensus 127 ~~~al~~L~~LS~~~~-~r~~i~~t----~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL 179 (334)
+..++..|..+...-. ....+... ..++.+...+. ++++++++.+..++..+
T Consensus 148 R~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 148 REECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH
Confidence 8888887877744332 23333333 25666777775 56778877666666555
No 104
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.42 E-value=1.2 Score=40.68 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHhcCChHH-------HHHhcc---CCchHHHHHHHHHHccCChhh-hhHh-hccCcH
Q psy12638 86 NLQSSTLKLLFNLSFDTNLREKIIKIGFLPK-------LVSLLE---EGKHQKIILQLLYHLSIEDRV-KAMF-AYTNCM 153 (334)
Q Consensus 86 ~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~-------Lv~lL~---~~~~~~~al~~L~~LS~~~~~-r~~i-~~t~~i 153 (334)
.=++.|+.+|+.||..+.|-.-+...+-.+. |+.+|+ ++..|+.|+.+|.+|+.-++. .-.+ .+++||
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4589999999999999888888877776654 344443 455799999999999986533 3234 457899
Q ss_pred HHHHHHhcc
Q psy12638 154 SLLMNMLLV 162 (334)
Q Consensus 154 ~~Lv~LL~~ 162 (334)
..|+.++..
T Consensus 219 ~~Li~FiE~ 227 (257)
T PF12031_consen 219 SHLIAFIED 227 (257)
T ss_pred HHHHHHHHH
Confidence 999999974
No 105
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=85.13 E-value=0.99 Score=39.06 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=53.8
Q ss_pred CcchHHHhhhCCchHHHHHHhccc-------cCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 266 DPISAEHFCKNSTVDLLINLLKEM-------QEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 266 ~~~~~~~l~~~g~I~~Lv~LL~~~-------~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
...|.+.|.+.|++..|+++|..- .++.+...+++.||..++.++..++.++...+.+.+|+..|.+.+
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~ 171 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPN 171 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTS
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCC
Confidence 456899999999999999988642 134478888899999999888899999998899989888887653
No 106
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=85.00 E-value=35 Score=33.48 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHhhcC-ChhHHHHH---Hh-cCChHHHHHhccCCc-----hHHHHHHHHHHccC-ChhhhhHhhccCcHH
Q psy12638 86 NLQSSTLKLLFNLSF-DTNLREKI---IK-IGFLPKLVSLLEEGK-----HQKIILQLLYHLSI-EDRVKAMFAYTNCMS 154 (334)
Q Consensus 86 ~l~~~al~~L~NLS~-d~~~r~~i---v~-~g~Ip~Lv~lL~~~~-----~~~~al~~L~~LS~-~~~~r~~i~~t~~i~ 154 (334)
.+.+.-++++.-+.. ++.....+ .+ ..+.+.|..+++++. .-..|+.++...=. ++..-..+.+.|-++
T Consensus 75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~ 154 (379)
T PF06025_consen 75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID 154 (379)
T ss_pred HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence 444555555555555 43333322 23 444556667776654 35667777777644 567778888899999
Q ss_pred HHHHHhc-cCCCCchHHHHHH----HHHHHccCcchHHHHHhcCchHHHHHHHhc
Q psy12638 155 LLMNMLL-VEQDDETDNVLVA----LCINLALNSRNAELMLKNRQLELLMIQAFT 204 (334)
Q Consensus 155 ~Lv~LL~-~~~~~~~~~~~~~----ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~ 204 (334)
.+.+-+. .+-.+. .+++. ++-=++++.+..+++.+.+.|+.+++...+
T Consensus 155 ~~L~~i~~~~i~~s--~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 155 AFLDAITAKGILPS--SEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHHHhccCCCCc--HHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 8888886 332111 23332 333458899999999999999999988654
No 107
>KOG0212|consensus
Probab=84.20 E-value=11 Score=38.74 Aligned_cols=170 Identities=15% Similarity=0.181 Sum_probs=105.9
Q ss_pred hCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC-Cc--hHHHHHH---HHHHccCChh
Q psy12638 69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE-GK--HQKIILQ---LLYHLSIEDR 142 (334)
Q Consensus 69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~-~~--~~~~al~---~L~~LS~~~~ 142 (334)
-...++.++.-+.+.++.++..|+.-+.-...-+..---..-.|+...+.+++.+ +. .++++.. .|..+...+.
T Consensus 248 ~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~ 327 (675)
T KOG0212|consen 248 YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSER 327 (675)
T ss_pred cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhh
Confidence 3467888999999999999999998887666543222222335666677777743 22 2333322 2444445555
Q ss_pred hhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHH---HHHHHHHhc
Q psy12638 143 VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILL---LKVIRNMSI 219 (334)
Q Consensus 143 ~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~---~k~l~nLa~ 219 (334)
.+..|.....|..|.+.+.+ +..+.+-+++.-+..|-....++-.......++-|+..+..++|.++ +.++.+++.
T Consensus 328 ~~~~id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 328 LKEEIDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS 406 (675)
T ss_pred hccccchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence 55556655677778888764 33343333333344554455555555566789999999888888876 446778887
Q ss_pred CCCchhhhhhhHHHHHHHhhc
Q psy12638 220 HSNVKHYFVDYIGDIANCVQK 240 (334)
Q Consensus 220 ~~~~~~~f~~~i~~L~~~l~~ 240 (334)
++... ...+++..|+.+.++
T Consensus 407 s~~~~-~~~~fl~sLL~~f~e 426 (675)
T KOG0212|consen 407 SSNSP-NLRKFLLSLLEMFKE 426 (675)
T ss_pred Ccccc-cHHHHHHHHHHHHhh
Confidence 76554 234666666666544
No 108
>KOG2999|consensus
Probab=83.63 E-value=2.9 Score=42.58 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=107.5
Q ss_pred cceeecccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCCh----hHHHHHHHHHHhhcCChhHHHHHHhc
Q psy12638 36 CNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDS----NLQSSTLKLLFNLSFDTNLREKIIKI 111 (334)
Q Consensus 36 ~~~~~~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~----~l~~~al~~L~NLS~d~~~r~~iv~~ 111 (334)
.+.+....+..|-+|+.-|..+|.....-....+...++.|.+++.+++. +++..+++++.-|-.+.-+-...+..
T Consensus 89 ~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~~~ 168 (713)
T KOG2999|consen 89 MEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESVSN 168 (713)
T ss_pred HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeeccc
Confidence 45555555667778999999999999988888888999999999988765 67888888888777666566666667
Q ss_pred CChHHHHHhcc----CCchHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHH
Q psy12638 112 GFLPKLVSLLE----EGKHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCI 177 (334)
Q Consensus 112 g~Ip~Lv~lL~----~~~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~ 177 (334)
.+|-+.+.+.+ +...-..|+.+|-++-. ++..+..+++.--+..|+..+. ..+.+++..+++++-
T Consensus 169 ~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq-~~n~~i~~~aial~n 238 (713)
T KOG2999|consen 169 DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQ-VSNQRIQTCAIALLN 238 (713)
T ss_pred HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 77777777773 23456779999998855 4557888888889999999997 456677666555543
No 109
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=83.48 E-value=3.3 Score=32.47 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=46.0
Q ss_pred cCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc
Q psy12638 111 IGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA 180 (334)
Q Consensus 111 ~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs 180 (334)
.-+||++..++.++ ..|.+|.-.|||++..-.....--..+....|.+++. ++++.+++. +.++-+|-
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~-D~d~~Vr~~-a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA-DPDENVRSA-AELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHH-HHHHHHHh
Confidence 45789999999655 5789999999999866433222122456777778775 467777554 36666653
No 110
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=83.27 E-value=4.5 Score=34.46 Aligned_cols=72 Identities=17% Similarity=0.331 Sum_probs=54.2
Q ss_pred HHHHHhcC-Ccc-hHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhh
Q psy12638 258 NFIGTAAS-DPI-SAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331 (334)
Q Consensus 258 ~~lg~la~-~~~-~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~ 331 (334)
.+++.+=. .|+ +..++..+|+.+.+..+...+.++..+...++.++..-|.+.++|..+.+ .+++ .|-++++
T Consensus 65 ~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~-~L~~~~~ 138 (157)
T PF11701_consen 65 SALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVS-WLKELYK 138 (157)
T ss_dssp HHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHH-HHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHH-HHHHHHc
Confidence 34444433 444 66788999999999999987778888888889999999999999987765 3555 7777774
No 111
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=82.56 E-value=62 Score=35.03 Aligned_cols=56 Identities=20% Similarity=0.212 Sum_probs=45.1
Q ss_pred HHHHhcCChHHHHHhccC-------CchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhc
Q psy12638 106 EKIIKIGFLPKLVSLLEE-------GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLL 161 (334)
Q Consensus 106 ~~iv~~g~Ip~Lv~lL~~-------~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~ 161 (334)
..|.+.|++..++.++.+ ...-...+++|.+.+....+|..+.+.++++.|++.+.
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~ 173 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLN 173 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHH
Confidence 344568999999999942 12455678888888999999999999999999988885
No 112
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=80.58 E-value=3 Score=33.40 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc
Q psy12638 88 QSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK 125 (334)
Q Consensus 88 ~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~ 125 (334)
+..+++-|..||..|+.-..+++.|+++.|+.||..+.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN 100 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHEN 100 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCC
Confidence 56788889999999999999999999999999996543
No 113
>KOG1077|consensus
Probab=80.09 E-value=25 Score=37.16 Aligned_cols=175 Identities=17% Similarity=0.162 Sum_probs=104.6
Q ss_pred hhhhcccccceeccccccccccchhhhcccCCcceeecccCc--chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhcc
Q psy12638 4 EYYHRNLHIEVTHDTYPTRNAGVKAQRFDRGNCNCYGLIVPK--SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILM 81 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~ 81 (334)
++|..-++.-++.=.++.++.++-.| ++.-+|+|. -...+.+.|...-. -.+.-.....++.|-++|.
T Consensus 220 ~~yk~~~~~avs~L~riv~~~~t~~q-------dYTyy~vP~PWL~vKl~rlLq~~p~---~~D~~~r~~l~evl~~iLn 289 (938)
T KOG1077|consen 220 ESYKTCLPLAVSRLSRIVVVVGTSLQ-------DYTYYFVPAPWLQVKLLRLLQIYPT---PEDPSTRARLNEVLERILN 289 (938)
T ss_pred HHHhhhHHHHHHHHHHHHhhcccchh-------hceeecCCChHHHHHHHHHHHhCCC---CCCchHHHHHHHHHHHHHh
Confidence 45666666666666666665555332 444445542 23345555555433 2222222333444444442
Q ss_pred CCC-------h---hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhc
Q psy12638 82 IED-------S---NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAY 149 (334)
Q Consensus 82 ~~~-------~---~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~ 149 (334)
..+ . -.++..+.=.-||+++-+...++.. .++..|-++|. .+..|.+|+--+..|+..+-.-..+.+
T Consensus 290 k~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~ 368 (938)
T KOG1077|consen 290 KAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKK 368 (938)
T ss_pred ccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHH
Confidence 221 1 2333344445678877544444442 35778888884 567899999999999887655555555
Q ss_pred cCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhc
Q psy12638 150 TNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKN 192 (334)
Q Consensus 150 t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~ 192 (334)
. ...++..|.+..+..+.+.++.++|-. .|.+|+..|+++
T Consensus 369 h--~d~Ii~sLkterDvSirrravDLLY~m-cD~~Nak~IV~e 408 (938)
T KOG1077|consen 369 H--QDTIINSLKTERDVSIRRRAVDLLYAM-CDVSNAKQIVAE 408 (938)
T ss_pred H--HHHHHHHhccccchHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 4 677888888767777777777777754 367899999875
No 114
>KOG1240|consensus
Probab=80.07 E-value=23 Score=39.52 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=73.1
Q ss_pred cccCCcceeecccC---------cchhHHHHHHHhcccc--hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhc
Q psy12638 31 FDRGNCNCYGLIVP---------KSKREGRQDSRKLSVY--HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLS 99 (334)
Q Consensus 31 ~~r~~~~~~~~~~~---------~~~~~A~~~L~~LSi~--~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS 99 (334)
.+..|.-+++.+++ .+|.+|+..|..||.+ .|+|.. .++|.++.++..+..+++..|+..|.-+-
T Consensus 415 ~~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L 490 (1431)
T KOG1240|consen 415 PKEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD----RVLPYFVHLLMDSEADVRATALETLTELL 490 (1431)
T ss_pred ccccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh----hhHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 33455555555444 6788999999999965 445544 48999999999999999999987776543
Q ss_pred CChhHHHHHHhcCChHHHHHhc-cCC--chHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHh
Q psy12638 100 FDTNLREKIIKIGFLPKLVSLL-EEG--KHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNML 160 (334)
Q Consensus 100 ~d~~~r~~iv~~g~Ip~Lv~lL-~~~--~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL 160 (334)
.. |+=+ ..+ .+.++-+=-|.+|+.| ......|++..+|+.|.+-.
T Consensus 491 ~~----------------Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA 539 (1431)
T KOG1240|consen 491 AL----------------VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA 539 (1431)
T ss_pred hh----------------ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH
Confidence 10 0001 011 1355555566677777 66777777777888776544
No 115
>KOG2611|consensus
Probab=79.92 E-value=74 Score=32.40 Aligned_cols=129 Identities=10% Similarity=0.049 Sum_probs=88.9
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhcCC----hhHHHHHHhcCChHHHHHhccCC---------chHHHHHHHHHHccCCh
Q psy12638 75 KLPRILMIEDSNLQSSTLKLLFNLSFD----TNLREKIIKIGFLPKLVSLLEEG---------KHQKIILQLLYHLSIED 141 (334)
Q Consensus 75 ~Lv~LL~~~~~~l~~~al~~L~NLS~d----~~~r~~iv~~g~Ip~Lv~lL~~~---------~~~~~al~~L~~LS~~~ 141 (334)
.+.+++..++.+-+-.|+-+.-.+..+ ..+|..+-++=+.|-+-++|.+. ..+..++++|...|.++
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 356677777776666666666666654 35788899999999999999421 24888999999999887
Q ss_pred hhhhHhhccCcHHHHHHHhccCCCCc------hHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhc
Q psy12638 142 RVKAMFAYTNCMSLLMNMLLVEQDDE------TDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFT 204 (334)
Q Consensus 142 ~~r~~i~~t~~i~~Lv~LL~~~~~~~------~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~ 204 (334)
+.-..=---+.||.|.+.+..+.+++ .-.++-..++-.+..+........+||++.+-+ ..+
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q-~y~ 162 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQ-MYE 162 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHH-HHh
Confidence 54221111357999999998766666 223444455566777777777777889887764 344
No 116
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=79.49 E-value=26 Score=30.17 Aligned_cols=104 Identities=17% Similarity=0.143 Sum_probs=71.0
Q ss_pred HHHHhcCChHHHHHhccCC--------chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCC-CCchHHHHHHHH
Q psy12638 106 EKIIKIGFLPKLVSLLEEG--------KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQ-DDETDNVLVALC 176 (334)
Q Consensus 106 ~~iv~~g~Ip~Lv~lL~~~--------~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~-~~~~~~~~~~ll 176 (334)
.++++.|+++.|++++.++ +...+++..+..|=.+....=...+...|.+++..+.... +..+.+.+++++
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 5788999999999999533 2345567777776554432333444456788888887544 456666677888
Q ss_pred HHHccCcch-HHHHHhcCchHHHHHHHhcCChHH
Q psy12638 177 INLALNSRN-AELMLKNRQLELLMIQAFTQKNIL 209 (334)
Q Consensus 177 ~nLs~~~~n-~~~i~~~~gl~~Lv~~l~~~~d~~ 209 (334)
-++..++.. -+.+.++=-++.|+..+..++...
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~i 118 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEI 118 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHH
Confidence 888877776 555556667888888887755544
No 117
>KOG1517|consensus
Probab=78.74 E-value=27 Score=38.59 Aligned_cols=148 Identities=11% Similarity=0.123 Sum_probs=88.8
Q ss_pred cCcHHHHHHHhccCCCCchHHHHHHHHH--HHccCcchHHHHHhcCchHHHHHHHhcCC--hHH--HHH--HHHHHhcCC
Q psy12638 150 TNCMSLLMNMLLVEQDDETDNVLVALCI--NLALNSRNAELMLKNRQLELLMIQAFTQK--NIL--LLK--VIRNMSIHS 221 (334)
Q Consensus 150 t~~i~~Lv~LL~~~~~~~~~~~~~~ll~--nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~--d~~--~~k--~l~nLa~~~ 221 (334)
-|..|.+++||++ +..+++. .+..+. =|+.|+.++...++++|-..++..+..++ ++. +|. ++..+..+-
T Consensus 511 VGIFPYVLKLLQS-~a~ELrp-iLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQS-SARELRP-ILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred cchHHHHHHHhcc-chHhhhh-hHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 4678999999986 4556544 223332 56889999888888878777666654421 111 111 344444443
Q ss_pred Cchhh--hhhhHHHHHHHhhcCCc---cchhHHhhcHHHHHHHHHHhcCCcchHHHh-hhCCchHHHHHHhccccCCchH
Q psy12638 222 NVKHY--FVDYIGDIANCVQKEKD---ENIKLECLGTLEVINFIGTAASDPISAEHF-CKNSTVDLLINLLKEMQEDDEI 295 (334)
Q Consensus 222 ~~~~~--f~~~i~~L~~~l~~~~~---~~~~ve~Lg~leav~~lg~la~~~~~~~~l-~~~g~I~~Lv~LL~~~~~dde~ 295 (334)
+..|. +- +.|+.+..++-+ +.++-.. .+++||.+=.|.+-+... .+.+..+.|+.+|+. .-.|+
T Consensus 589 ~lGQ~acl~---~~li~iCle~lnd~~~pLLrQW-----~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD--~vpEV 658 (1387)
T KOG1517|consen 589 KLGQKACLN---GNLIGICLEHLNDDPEPLLRQW-----LCICLGRLWEDYDEARWSGRRDNAHEKLILLLSD--PVPEV 658 (1387)
T ss_pred chhHHHhcc---ccHHHHHHHHhcCCccHHHHHH-----HHHHHHHHhhhcchhhhccccccHHHHHHHHhcC--ccHHH
Confidence 32222 11 112222222211 1222222 688899998876655554 455788889999974 33578
Q ss_pred HHHHHHHHHHHHcC
Q psy12638 296 VLQILYVFYQICRH 309 (334)
Q Consensus 296 vlqi~~~l~~l~~~ 309 (334)
-..+++||+++..+
T Consensus 659 RaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 659 RAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHHHHHHHHhcc
Confidence 88899999999975
No 118
>KOG1242|consensus
Probab=78.42 E-value=28 Score=35.87 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=79.0
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG 124 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~ 124 (334)
++|.-++..+.-++....-.-...-..+||.+.+.+...++++++.+..+|.+++.--+|-. | .-.||.|++.+.+|
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I--~~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-I--QKIIPTLLDALADP 345 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-H--HHHHHHHHHHhcCc
Confidence 45555655555544433333344557899999999999999999999999999998666665 3 24789999999888
Q ss_pred c-hHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCC---CCchHHHHHHHHHHHccC
Q psy12638 125 K-HQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQ---DDETDNVLVALCINLALN 182 (334)
Q Consensus 125 ~-~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~---~~~~~~~~~~ll~nLs~~ 182 (334)
. ...-|+..|+.=++-. ......+..++-+|..+. +...++.++.+.-|++.-
T Consensus 346 ~~~~~e~~~~L~~ttFV~-----~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 346 SCYTPECLDSLGATTFVA-----EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred ccchHHHHHhhcceeeee-----eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 7 3333444443332221 111234555555554332 222323343444566443
No 119
>KOG2023|consensus
Probab=78.18 E-value=19 Score=37.77 Aligned_cols=175 Identities=19% Similarity=0.278 Sum_probs=94.9
Q ss_pred CChHHHHHhccCCc--hHHHHHHHHHHccCChhh--hhHhhccC----cHHHHHHHhccCCCCchHHHHHHHHHHHccCc
Q psy12638 112 GFLPKLVSLLEEGK--HQKIILQLLYHLSIEDRV--KAMFAYTN----CMSLLMNMLLVEQDDETDNVLVALCINLALNS 183 (334)
Q Consensus 112 g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~~~--r~~i~~t~----~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~ 183 (334)
.++|.|..+|.+++ .++=|.+.|-.++.|..- ...+- +. -||.+.++..+ +.+..+..+ --++|--.-.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~-~rpl~~mipkfl~f~~h-~spkiRs~A-~~cvNq~i~~ 204 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL-TRPLNIMIPKFLQFFKH-PSPKIRSHA-VGCVNQFIII 204 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc-cCchHHhHHHHHHHHhC-CChhHHHHH-Hhhhhheeec
Confidence 35789999997654 577799999999877411 11111 11 58899999876 455655543 3456765555
Q ss_pred chHHHHHhc-CchHHHHHHHhcCChHHH-HHHHHHHhcCCCchhh-hhhhHHHHHHHhh--cCC-ccchhHHhhcHHHHH
Q psy12638 184 RNAELMLKN-RQLELLMIQAFTQKNILL-LKVIRNMSIHSNVKHY-FVDYIGDIANCVQ--KEK-DENIKLECLGTLEVI 257 (334)
Q Consensus 184 ~n~~~i~~~-~gl~~Lv~~l~~~~d~~~-~k~l~nLa~~~~~~~~-f~~~i~~L~~~l~--~~~-~~~~~ve~Lg~leav 257 (334)
+++..+..- .-++.+..++ +..+|.+ ..+++.+..--+-+.. ..+.++..+.-+. +++ +++. .+||+
T Consensus 205 ~~qal~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~V------ALEAC 277 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENV------ALEAC 277 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhH------HHHHH
Confidence 566655542 2334444444 3334443 3345544432111111 1222333333221 122 1221 33788
Q ss_pred HHHHHhcCCcchHHHhhhC--CchHHHHHHhccccCCchHHH
Q psy12638 258 NFIGTAASDPISAEHFCKN--STVDLLINLLKEMQEDDEIVL 297 (334)
Q Consensus 258 ~~lg~la~~~~~~~~l~~~--g~I~~Lv~LL~~~~~dde~vl 297 (334)
...-++|..|-|...+..+ .+||.|++-.. .+|+|.+.+
T Consensus 278 EFwla~aeqpi~~~~L~p~l~kliPvLl~~M~-Ysd~D~~LL 318 (885)
T KOG2023|consen 278 EFWLALAEQPICKEVLQPYLDKLIPVLLSGMV-YSDDDIILL 318 (885)
T ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHHHHccCc-cccccHHHh
Confidence 9889999999888777654 45555555443 355555444
No 120
>KOG1241|consensus
Probab=78.04 E-value=38 Score=36.03 Aligned_cols=245 Identities=14% Similarity=0.150 Sum_probs=121.0
Q ss_pred cchHHHhhccCCChh-HHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhc-c---CCchHHHHHHHHHHccC-----
Q psy12638 72 LIEKLPRILMIEDSN-LQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLL-E---EGKHQKIILQLLYHLSI----- 139 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~-l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL-~---~~~~~~~al~~L~~LS~----- 139 (334)
.++.++.....+.+. +++.++.+|.-++.| ++.-....+ .++-.++.=. + +...|-.|+..|||-=.
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN-~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n 208 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSN-DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN 208 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHh-HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 455566666665555 889999999999986 454333333 3334444333 3 22457778888876421
Q ss_pred --ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH-ccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHH--
Q psy12638 140 --EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL-ALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVI-- 214 (334)
Q Consensus 140 --~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL-s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l-- 214 (334)
.+..|.-| ++...+. .++++.+++..++.-++.+ +++.+-.+.-.+..-|..-+....+.+|.+++..+
T Consensus 209 F~~E~ern~i-----MqvvcEa-tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEF 282 (859)
T KOG1241|consen 209 FNNEMERNYI-----MQVVCEA-TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEF 282 (859)
T ss_pred hccHhhhcee-----eeeeeec-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 12223322 1112222 2344555543333222222 44444443333322333333333444555543321
Q ss_pred -HHHhcC---------------CCc-hhhh-----hhhHHHHHHHhhcCC----ccchhHHhhcHHHHHHHHHHhcCCcc
Q psy12638 215 -RNMSIH---------------SNV-KHYF-----VDYIGDIANCVQKEK----DENIKLECLGTLEVINFIGTAASDPI 268 (334)
Q Consensus 215 -~nLa~~---------------~~~-~~~f-----~~~i~~L~~~l~~~~----~~~~~ve~Lg~leav~~lg~la~~~~ 268 (334)
.+++.. .++ ...| .+.++.|+..+.+++ ++++-..- +|-.||...|..
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k----AAg~CL~l~A~~-- 356 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK----AAGVCLMLFAQC-- 356 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH----HHHHHHHHHHHH--
Confidence 222221 111 1113 356777888887754 22322211 233344444431
Q ss_pred hHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchh--hHHHhhcCCcHHHHHHhhhcCC
Q psy12638 269 SAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC--QNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 269 ~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~--~~~i~~~~~i~~~Li~LL~d~n 334 (334)
+.+.++. -++|++.+-++ ++|=...-..+++||+....++. ...++. +.+..++.+|.|++
T Consensus 357 ~~D~Iv~-~Vl~Fiee~i~--~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~--qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 357 VGDDIVP-HVLPFIEENIQ--NPDWRNREAAVMAFGSILEGPEPDKLTPIVI--QALPSIINLMSDPS 419 (859)
T ss_pred hcccchh-hhHHHHHHhcC--CcchhhhhHHHHHHHhhhcCCchhhhhHHHh--hhhHHHHHHhcCch
Confidence 1123333 25566665554 45556677789999999855553 323343 34449999999874
No 121
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=77.57 E-value=4.8 Score=41.46 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=75.9
Q ss_pred CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc--cCCchHHHHHHHHHHc---cCChhhh
Q psy12638 70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL--EEGKHQKIILQLLYHL---SIEDRVK 144 (334)
Q Consensus 70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL--~~~~~~~~al~~L~~L---S~~~~~r 144 (334)
.|.+-++++-+.+++..++..++.+|.-++-.-.--.+-+..|.+.+|.+-+ +.+..|.-|+..|..+ +.+++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 4677788999999999999999999999885433334667789999998766 4555566666666654 5566655
Q ss_pred hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcch
Q psy12638 145 AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRN 185 (334)
Q Consensus 145 ~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n 185 (334)
.. -.|+.++++.|..++.. .++.|++-|...
T Consensus 170 ~~-------n~l~~~vqnDPS~EVRr---~allni~vdnsT 200 (885)
T COG5218 170 IV-------NLLKDIVQNDPSDEVRR---LALLNISVDNST 200 (885)
T ss_pred HH-------HHHHHHHhcCcHHHHHH---HHHHHeeeCCCc
Confidence 32 36888888877777643 456777666543
No 122
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=76.83 E-value=9.8 Score=33.85 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=57.8
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHhh
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFA 148 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i~ 148 (334)
.+++.+.+.+.+....+...|+.++..|+..-...-.-.-..++|.|++.++++ ..+..|..+|..+...-..-
T Consensus 53 ~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---- 128 (228)
T PF12348_consen 53 QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---- 128 (228)
T ss_dssp ---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----
T ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH----
Confidence 677888889988888999999999999997643333333456889999999765 35677777777765543211
Q ss_pred ccCc-HHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638 149 YTNC-MSLLMNMLLVEQDDETDNVLVALCINL 179 (334)
Q Consensus 149 ~t~~-i~~Lv~LL~~~~~~~~~~~~~~ll~nL 179 (334)
+.. ++.+..... ..++.+...++..+..+
T Consensus 129 -~~~~~~~l~~~~~-~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 129 -PKILLEILSQGLK-SKNPQVREECAEWLAII 158 (228)
T ss_dssp --HHHHHHHHHHTT--S-HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 112 334444443 45666666655545444
No 123
>KOG1061|consensus
Probab=75.47 E-value=21 Score=37.76 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=52.2
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCCh
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIED 141 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~ 141 (334)
+..++.+.+.++++-++..+.-+..+|= ..........|+++.|..++. +|..-..|++.|..+...+
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 4557888999999998888876665553 355666678999999999995 5567778888888886554
No 124
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=74.05 E-value=3.7 Score=42.25 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=16.8
Q ss_pred chHHHHHHhccccCCchHHHHHHHHHHHHHcCchh
Q psy12638 278 TVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC 312 (334)
Q Consensus 278 ~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~ 312 (334)
++|.+-++ +++..+.++.++.-++.+..+
T Consensus 273 vlP~l~~l------~e~~kl~lLk~lAE~s~~~~~ 301 (556)
T PF05918_consen 273 VLPKLSDL------PEDRKLDLLKLLAELSPFCGA 301 (556)
T ss_dssp TCCCTT-----------HHHHHHHHHHHHHTT---
T ss_pred hcCChhhC------ChHHHHHHHHHHHHHcCCCCc
Confidence 45655444 557888999999999987664
No 125
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=73.69 E-value=16 Score=27.09 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHH
Q psy12638 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYL 316 (334)
Q Consensus 256 av~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i 316 (334)
+..++|.++..+.....+.+.++|+.++++... .+---+---+.++++-+++..+.++.+
T Consensus 7 aLWaighIgss~~G~~lL~~~~iv~~iv~~a~~-s~v~siRGT~fy~Lglis~T~~G~~~L 66 (73)
T PF14668_consen 7 ALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN-SPVLSIRGTCFYVLGLISSTEEGAEIL 66 (73)
T ss_pred HHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh-CCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 567899999988888888888999999999974 222235555688888888777777543
No 126
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=73.35 E-value=26 Score=35.51 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=23.7
Q ss_pred HHHHHHhcCChHHHHHhcc---CCchHHHHHHHHHHc
Q psy12638 104 LREKIIKIGFLPKLVSLLE---EGKHQKIILQLLYHL 137 (334)
Q Consensus 104 ~r~~iv~~g~Ip~Lv~lL~---~~~~~~~al~~L~~L 137 (334)
.-.-+.+.++||+|+.+|. +++.+..|.-+|..+
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aI 90 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAI 90 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 3344456999999999995 334566676666665
No 127
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=72.94 E-value=34 Score=29.53 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=68.5
Q ss_pred hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCCh-HHHHHhcc--C
Q psy12638 47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL-PKLVSLLE--E 123 (334)
Q Consensus 47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~I-p~Lv~lL~--~ 123 (334)
|..|+..+..|.+...|-. ...+|.+.+.|.++++.++..|+.+|..|-..+-.|. .|-+ ..++.++. +
T Consensus 5 R~n~i~~l~DL~~r~~~~v----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 5 RNNAIIALGDLCIRYPNLV----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLLVDEN 76 (178)
T ss_pred HHHHHHHHHHHHHhCcHHH----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHHcCCC
Confidence 4456666666665433322 2357789999999999999999999999976532221 1333 67777775 4
Q ss_pred CchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhcc
Q psy12638 124 GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLV 162 (334)
Q Consensus 124 ~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~ 162 (334)
++.+..|..++..++... ....| ...+|.++.-+..
T Consensus 77 ~~Ir~~A~~~~~e~~~~~-~~~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKR-NPNII--YNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHHHhc-cchHH--HHHHHHHHHHHhC
Confidence 568999999999988763 22233 2355555555543
No 128
>KOG0213|consensus
Probab=72.22 E-value=1.5e+02 Score=32.02 Aligned_cols=246 Identities=14% Similarity=0.190 Sum_probs=128.7
Q ss_pred chHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC-------ch---HHHHHHHHHHccCC--
Q psy12638 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG-------KH---QKIILQLLYHLSIE-- 140 (334)
Q Consensus 73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~-------~~---~~~al~~L~~LS~~-- 140 (334)
+-.+.+=+.++|++.++..++.+.-.+.-..+-.+-.+...+|.+....... .. -..+..+-..+..+
T Consensus 638 mlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~ 717 (1172)
T KOG0213|consen 638 MLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPI 717 (1172)
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHH
Confidence 3446666788999999999999999988777888888888888877666211 11 11222222222222
Q ss_pred ------------hhhhhHhhccCcHHHHHHHhccCC-CCchHHHHH-HHHHHHccCcchHHHHHhcCchHHHHHHHhcCC
Q psy12638 141 ------------DRVKAMFAYTNCMSLLMNMLLVEQ-DDETDNVLV-ALCINLALNSRNAELMLKNRQLELLMIQAFTQK 206 (334)
Q Consensus 141 ------------~~~r~~i~~t~~i~~Lv~LL~~~~-~~~~~~~~~-~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~ 206 (334)
+..|.+.+ +.+..++..+.... ++.+....+ .+|+-+..+...-..|. .||+..+.-+...-
T Consensus 718 v~R~v~~lkde~e~yrkm~~--etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml--~gfg~V~~~lg~r~ 793 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQYRKMVA--ETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVML--LGFGTVVNALGGRV 793 (1172)
T ss_pred HHHHhhhhccccHHHHHHHH--HHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhh--hhHHHHHHHHhhcc
Confidence 22333332 24555555554322 222222222 23333322222222222 46666555543322
Q ss_pred hH---HHHH-HHHHHhcCCCc-hhhhhhhHHHHHHHhhcCCccch-------hHHhhc--------HH-HHHHHHHHhc-
Q psy12638 207 NI---LLLK-VIRNMSIHSNV-KHYFVDYIGDIANCVQKEKDENI-------KLECLG--------TL-EVINFIGTAA- 264 (334)
Q Consensus 207 d~---~~~k-~l~nLa~~~~~-~~~f~~~i~~L~~~l~~~~~~~~-------~ve~Lg--------~l-eav~~lg~la- 264 (334)
-| .+.. .++.|-..++. +|+-.+.++.++.++++++.++. +.|.|| .+ .|+.++-+.-
T Consensus 794 kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 794 KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 22 2222 33444333222 34457888889888888764332 223332 21 3344443332
Q ss_pred ---CCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch---hhHHHhhcCCcHHHHHHhhhcC
Q psy12638 265 ---SDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS---CQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 265 ---~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~---~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
..|-.. +++|.|--+|+++.+ .++--.+-.++++|...+ .+..-+. |--.|+|+|+.-
T Consensus 874 m~km~pPi~------dllPrltPILknrhe--KVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkah 937 (1172)
T KOG0213|consen 874 MTKMTPPIK------DLLPRLTPILKNRHE--KVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAH 937 (1172)
T ss_pred ccccCCChh------hhcccchHhhhhhHH--HHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHH
Confidence 122222 578999999987653 566667888888885544 2222222 334677777653
No 129
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=71.66 E-value=9 Score=32.61 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=61.2
Q ss_pred HHHHH-HhcccchhhHHHh-HhCCcchHHHhhcc--CCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc
Q psy12638 50 GRQDS-RKLSVYHVNKEQM-ANLNLIEKLPRILM--IEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK 125 (334)
Q Consensus 50 A~~~L-~~LSi~~enk~~m-~~~g~I~~Lv~LL~--~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~ 125 (334)
|..++ .-+.+.++-...+ ...|..+.+..+.. +++..++..++++|--=+.|...|..|.+. +++-|.++++.+.
T Consensus 63 ~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~ 141 (157)
T PF11701_consen 63 AFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSK 141 (157)
T ss_dssp HHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHcccc
Confidence 34444 3333455555554 46799999999999 888899999998887777777777777755 6799999995332
Q ss_pred ----hHHHHHHHHHHc
Q psy12638 126 ----HQKIILQLLYHL 137 (334)
Q Consensus 126 ----~~~~al~~L~~L 137 (334)
.+.+|+..|..|
T Consensus 142 ~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 142 DDSEIRVLAAVGLCKL 157 (157)
T ss_dssp -HH-CHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHhcC
Confidence 677777777653
No 130
>KOG2025|consensus
Probab=71.58 E-value=16 Score=38.55 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=82.9
Q ss_pred HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc--cCCchHHHHHHHHHHccCChhhhh
Q psy12638 68 ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL--EEGKHQKIILQLLYHLSIEDRVKA 145 (334)
Q Consensus 68 ~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL--~~~~~~~~al~~L~~LS~~~~~r~ 145 (334)
.=.|.+..+++-..+++..++...+.+|--|+-....+..-+-.+++.++..-+ +.|..|--|+..|..+-.++.. .
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-e 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-E 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-C
Confidence 335677788888899999999999999988886556667777778888887666 4677787788888888643311 0
Q ss_pred HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHH
Q psy12638 146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELML 190 (334)
Q Consensus 146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~ 190 (334)
+-+..-.++.+++++|++++.. +++.|++-+.....-|+
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRR---aaLsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRR---AALSNISVDNSTLPCIV 199 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHH---HHHHhhccCcccchhHH
Confidence 1124567888999888888753 56778877765544443
No 131
>KOG1077|consensus
Probab=71.52 E-value=1.5e+02 Score=31.73 Aligned_cols=93 Identities=18% Similarity=0.326 Sum_probs=52.9
Q ss_pred HHHhcCCCch-hhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCc
Q psy12638 215 RNMSIHSNVK-HYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293 (334)
Q Consensus 215 ~nLa~~~~~~-~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dd 293 (334)
.+++.|-+.. +.+..++..|.++++..+ .-+..| |..-+..++......+.+.++ ...++..|+... |-
T Consensus 314 I~l~~h~D~e~~ll~~~~~~Lg~fls~rE---~NiRYL----aLEsm~~L~ss~~s~davK~h--~d~Ii~sLkter-Dv 383 (938)
T KOG1077|consen 314 ISLAIHLDSEPELLSRAVNQLGQFLSHRE---TNIRYL----ALESMCKLASSEFSIDAVKKH--QDTIINSLKTER-DV 383 (938)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhhccc---ccchhh----hHHHHHHHHhccchHHHHHHH--HHHHHHHhcccc-ch
Confidence 3455554433 335677777777776544 112222 333345555555555566665 678888887422 22
Q ss_pred hHHHHHHHHHHHHHcCchhhHHHhh
Q psy12638 294 EIVLQILYVFYQICRHASCQNYLIK 318 (334)
Q Consensus 294 e~vlqi~~~l~~l~~~~~~~~~i~~ 318 (334)
-+.--++-.+|.|| +-+.++.|+.
T Consensus 384 SirrravDLLY~mc-D~~Nak~IV~ 407 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMC-DVSNAKQIVA 407 (938)
T ss_pred HHHHHHHHHHHHHh-chhhHHHHHH
Confidence 35555688899997 4455555554
No 132
>KOG1062|consensus
Probab=71.04 E-value=1.6e+02 Score=31.83 Aligned_cols=177 Identities=15% Similarity=0.147 Sum_probs=94.1
Q ss_pred hhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHc-cCChhhhhHhhccCcHH
Q psy12638 78 RILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHL-SIEDRVKAMFAYTNCMS 154 (334)
Q Consensus 78 ~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~L-S~~~~~r~~i~~t~~i~ 154 (334)
+=|.+++.-++..|+.+|+|++. +|.... +-|-+.++|+ +|-.+.-|+-.++.+ =..++.-+.| ++
T Consensus 114 nDL~s~nq~vVglAL~alg~i~s-~Emard-----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~ 182 (866)
T KOG1062|consen 114 NDLNSSNQYVVGLALCALGNICS-PEMARD-----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VI 182 (866)
T ss_pred hhccCCCeeehHHHHHHhhccCC-HHHhHH-----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hH
Confidence 34567788889999999999985 333332 4577777785 444554444334433 2233333333 44
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHH-ccCcchHHHHHhcCchHHHHHHHhc--------------CChHHH----HHHHH
Q psy12638 155 LLMNMLLVEQDDETDNVLVALCINL-ALNSRNAELMLKNRQLELLMIQAFT--------------QKNILL----LKVIR 215 (334)
Q Consensus 155 ~Lv~LL~~~~~~~~~~~~~~ll~nL-s~~~~n~~~i~~~~gl~~Lv~~l~~--------------~~d~~~----~k~l~ 215 (334)
+-.++|.+ .+..+--..+.++.-+ ..+++...-+.+ ..+.||.++.+ -.||++ ++++|
T Consensus 183 ~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr 259 (866)
T KOG1062|consen 183 AFRKLLCE-KHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR 259 (866)
T ss_pred HHHHHHhh-cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH
Confidence 45555543 2233212222333322 222223333332 55556655543 136653 56677
Q ss_pred HHhcCCCchhh-hhhhHHHHHHHhhcCC--ccchhHHhhcHH-----------HHHHHHHHhcCCcc
Q psy12638 216 NMSIHSNVKHY-FVDYIGDIANCVQKEK--DENIKLECLGTL-----------EVINFIGTAASDPI 268 (334)
Q Consensus 216 nLa~~~~~~~~-f~~~i~~L~~~l~~~~--~~~~~ve~Lg~l-----------eav~~lg~la~~~~ 268 (334)
-+-++++.... |.+.+...++.-.+.+ +...+.||+.++ -|+-+||..-.+++
T Consensus 260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d 326 (866)
T KOG1062|consen 260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD 326 (866)
T ss_pred HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence 77777666554 4455444444322222 446778888776 47778888876555
No 133
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=69.21 E-value=19 Score=32.98 Aligned_cols=142 Identities=10% Similarity=0.065 Sum_probs=93.2
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhcc-----CCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhc
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILM-----IEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLL 121 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~-----~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL 121 (334)
.|+..|+=++.+++.|.-..++-+-=.|..+|. ++.+-++-.++..+..|..+ +++-..+....+||...++.
T Consensus 119 naL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm 198 (315)
T COG5209 119 NALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM 198 (315)
T ss_pred HHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 678888888999999999888887666667663 34556888899999999986 48889999999999999999
Q ss_pred c--CCchHHHHHHHHHHccCChhhhhHhhccC----c----HHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHH
Q psy12638 122 E--EGKHQKIILQLLYHLSIEDRVKAMFAYTN----C----MSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELML 190 (334)
Q Consensus 122 ~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~----~----i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~ 190 (334)
. ++-.+-.|+.++-.+-.||.+-.-+.+|= + +-.++.-+-+....++-+.+++.-.-|+-+++-+....
T Consensus 199 e~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL~ 277 (315)
T COG5209 199 ELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALLS 277 (315)
T ss_pred HhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHHh
Confidence 4 44456667777776666665554443321 2 22222222222233433444444445555555555443
No 134
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=68.42 E-value=21 Score=26.44 Aligned_cols=64 Identities=8% Similarity=0.005 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc-CC--chHHHHHHHHHHccCChhhhhHhhccC
Q psy12638 88 QSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE-EG--KHQKIILQLLYHLSIEDRVKAMFAYTN 151 (334)
Q Consensus 88 ~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~-~~--~~~~~al~~L~~LS~~~~~r~~i~~t~ 151 (334)
++.|+=++.|.+..+..-.-+.+.+++|.++++.. +| ..|..|..+|.-+|...+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 46678889999988777777778899999999995 44 468889999999999988887776544
No 135
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=68.33 E-value=36 Score=32.79 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=83.8
Q ss_pred chhHHHHHHHhcccchhhHHHhHhCCcc-hHHHhhccC--CChhHHHHHHHHHHhhcCChhHHHHHHh-cCChHHHHHhc
Q psy12638 46 SKREGRQDSRKLSVYHVNKEQMANLNLI-EKLPRILMI--EDSNLQSSTLKLLFNLSFDTNLREKIIK-IGFLPKLVSLL 121 (334)
Q Consensus 46 ~~~~A~~~L~~LSi~~enk~~m~~~g~I-~~Lv~LL~~--~~~~l~~~al~~L~NLS~d~~~r~~iv~-~g~Ip~Lv~lL 121 (334)
++-+|+++|..|...+|.|.-+-..+.. ..++.+++. +..++|.+++-+++-|+|.++.-+.+-+ -..|--|+++.
T Consensus 165 Trlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iV 244 (432)
T COG5231 165 TRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIV 244 (432)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3448899999999999988777655533 357777765 5679999999999999999988855554 56788888888
Q ss_pred cC---CchHHHHHHHHHHccCChhhhhHhhc---cCcHHHHHHHhccCC
Q psy12638 122 EE---GKHQKIILQLLYHLSIEDRVKAMFAY---TNCMSLLMNMLLVEQ 164 (334)
Q Consensus 122 ~~---~~~~~~al~~L~~LS~~~~~r~~i~~---t~~i~~Lv~LL~~~~ 164 (334)
+. +....++++++.|+..- .-|..|.. .|-+.+-++.|....
T Consensus 245 k~~~keKV~Rlc~~Iv~n~~dK-~pK~~I~~~lll~~~~k~vq~L~erk 292 (432)
T COG5231 245 KERAKEKVLRLCCGIVANVLDK-SPKGYIFSPLLLNDISKCVQVLLERK 292 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cccchhhhhHhhcchHHHHHHHHhcC
Confidence 53 34567899999998762 22333333 344555566665444
No 136
>KOG1824|consensus
Probab=68.20 E-value=1.6e+02 Score=32.51 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=62.0
Q ss_pred chHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCchHHHHHHHHHHccCChhhhhHhhccC-
Q psy12638 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTN- 151 (334)
Q Consensus 73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~~~r~~i~~t~- 151 (334)
+..+..|+...+..+-+.|+.+|.-+...+-...--++.-+++.++.++++|-.+..|+..+.+ .+..++.|+
T Consensus 695 L~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~------~f~alV~t~~ 768 (1233)
T KOG1824|consen 695 LVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLL------FFQALVITKE 768 (1233)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHH------HHHHHHhcCC
Confidence 3345567777788899999999999999876666777888999999999999888777765553 345555543
Q ss_pred -c--HHHHHHHhcc
Q psy12638 152 -C--MSLLMNMLLV 162 (334)
Q Consensus 152 -~--i~~Lv~LL~~ 162 (334)
+ +..+..++..
T Consensus 769 ~~l~y~~l~s~lt~ 782 (1233)
T KOG1824|consen 769 PDLDYISLLSLLTA 782 (1233)
T ss_pred CCccHHHHHHHHcC
Confidence 2 4566666653
No 137
>KOG2999|consensus
Probab=67.79 E-value=91 Score=32.24 Aligned_cols=135 Identities=20% Similarity=0.201 Sum_probs=87.2
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCch------HHHHHHHHHHccCChhhhhHhh
Q psy12638 75 KLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKH------QKIILQLLYHLSIEDRVKAMFA 148 (334)
Q Consensus 75 ~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~~------~~~al~~L~~LS~~~~~r~~i~ 148 (334)
.+.+++.+++..-+..|++-|-.||-|+..-.++++..++..|..++.++.. ...++..+..|=...-..=.-.
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~ 166 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESV 166 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeec
Confidence 4778888998888888999999999999999999999999999999965542 2233333333221111100111
Q ss_pred ccCcHHHHHHHhccC-CCCchHHHHHHHHHHHccCcc-hHHHHHhcCchHHHHHHHhcCChHH
Q psy12638 149 YTNCMSLLMNMLLVE-QDDETDNVLVALCINLALNSR-NAELMLKNRQLELLMIQAFTQKNIL 209 (334)
Q Consensus 149 ~t~~i~~Lv~LL~~~-~~~~~~~~~~~ll~nLs~~~~-n~~~i~~~~gl~~Lv~~l~~~~d~~ 209 (334)
....|...+.+..-. .+..+...++..+.++..++. -.+.+.++--++.|+..+..++.+.
T Consensus 167 ~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i 229 (713)
T KOG2999|consen 167 SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRI 229 (713)
T ss_pred ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHH
Confidence 122344444444211 122333455677778766665 5777778778888888888777664
No 138
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=66.95 E-value=6.8 Score=31.99 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=39.7
Q ss_pred chHHHHHHhccccCCchHHHHH-HHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 278 TVDLLINLLKEMQEDDEIVLQI-LYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 278 ~I~~Lv~LL~~~~~dde~vlqi-~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
++..|+++|.... |..+++| ++=+|.+++|-+....++.+-++-..+++||.+.|
T Consensus 44 llk~L~~lL~~s~--d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d 99 (119)
T PF11698_consen 44 LLKKLIKLLDKSD--DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHED 99 (119)
T ss_dssp HHHHHHHHH-SHH--HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SS
T ss_pred HHHHHHHHHccCC--CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCC
Confidence 6889999996333 5555555 88899999777755567777888888889998765
No 139
>KOG1058|consensus
Probab=66.28 E-value=73 Score=34.11 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=87.9
Q ss_pred hhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccCChhhhhHhhccCcHHH
Q psy12638 78 RILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIEDRVKAMFAYTNCMSL 155 (334)
Q Consensus 78 ~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~~~r~~i~~t~~i~~ 155 (334)
+=|+++|+=++-.++++|+.|=. +|.- ...+|.+-.+|..+. .|..|.-.++.+=.. ...-..++.+.
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE-~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~----~~~L~pDapeL 175 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKE-PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKN----FEHLIPDAPEL 175 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCc-HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhh----hhhhcCChHHH
Confidence 45688899999999999998863 3332 245677778885443 355554333322111 11222456667
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChH---HHHHHHHHHhcCCCchhh-hhhhH
Q psy12638 156 LMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNI---LLLKVIRNMSIHSNVKHY-FVDYI 231 (334)
Q Consensus 156 Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~---~~~k~l~nLa~~~~~~~~-f~~~i 231 (334)
+-+.|.+..++....++ .+.-...|++.+..-..+ -++..-+-++. +.+..+|..+..++..+. |..++
T Consensus 176 i~~fL~~e~DpsCkRNA--Fi~L~~~D~ErAl~Yl~~-----~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i 248 (948)
T KOG1058|consen 176 IESFLLTEQDPSCKRNA--FLMLFTTDPERALNYLLS-----NIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCI 248 (948)
T ss_pred HHHHHHhccCchhHHHH--HHHHHhcCHHHHHHHHHh-----hHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHH
Confidence 77778765565554444 444455677776644432 12222222222 346678888887666544 44444
Q ss_pred HHHHHHhhcCCccchhHHhhcHH
Q psy12638 232 GDIANCVQKEKDENIKLECLGTL 254 (334)
Q Consensus 232 ~~L~~~l~~~~~~~~~ve~Lg~l 254 (334)
. .++... +.....|+-|++
T Consensus 249 ~---~lL~st-ssaV~fEaa~tl 267 (948)
T KOG1058|consen 249 Y---NLLSST-SSAVIFEAAGTL 267 (948)
T ss_pred H---HHHhcC-CchhhhhhcceE
Confidence 4 444443 345666776665
No 140
>KOG1060|consensus
Probab=65.09 E-value=70 Score=34.41 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=35.1
Q ss_pred hhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc-CCchHHHHHH
Q psy12638 78 RILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE-EGKHQKIILQ 132 (334)
Q Consensus 78 ~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~-~~~~~~~al~ 132 (334)
-+|.|.++.+.-.+..+.+-|+--.++ ..++.+||.+|+ +++.|...+.
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~~vqyvvL~ 343 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNREVQYVVLQ 343 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCCcchhhhHH
Confidence 367788888888888999999853322 234789999995 5566665544
No 141
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=64.93 E-value=37 Score=31.09 Aligned_cols=154 Identities=19% Similarity=0.150 Sum_probs=82.8
Q ss_pred cchhHHHHHHHhccc-chhhHHHhHhCC--cchHHHhhccC----CChhHHHHHHHHHHhhcCChhHHHHHHhcC--ChH
Q psy12638 45 KSKREGRQDSRKLSV-YHVNKEQMANLN--LIEKLPRILMI----EDSNLQSSTLKLLFNLSFDTNLREKIIKIG--FLP 115 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi-~~enk~~m~~~g--~I~~Lv~LL~~----~~~~l~~~al~~L~NLS~d~~~r~~iv~~g--~Ip 115 (334)
..+.+.+.-|.++.. ++..-......+ +.+.+..++.. ..+..+-.++|+++|+-.++..|..+.+.. .|.
T Consensus 77 ~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 77 PESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSIL 156 (268)
T ss_dssp CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHH
T ss_pred CccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHH
Confidence 344444455545544 333333332222 34444444432 456788899999999999988888888543 344
Q ss_pred HHHHhc-cC-----CchHHHHHHHHHHccCCh-hhhh-HhhccCcHHHHHHHhc-cCCCCchHHHHHHHHHHHccCcchH
Q psy12638 116 KLVSLL-EE-----GKHQKIILQLLYHLSIED-RVKA-MFAYTNCMSLLMNMLL-VEQDDETDNVLVALCINLALNSRNA 186 (334)
Q Consensus 116 ~Lv~lL-~~-----~~~~~~al~~L~~LS~~~-~~r~-~i~~t~~i~~Lv~LL~-~~~~~~~~~~~~~ll~nLs~~~~n~ 186 (334)
..+.-+ .+ ...+-.++.+++|+|..- ..+. .=.+.+.+..+++.+. ...+++..-..+..+-||...+...
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 444433 32 345777889999998753 2221 0011123455555332 2234444444444455777666666
Q ss_pred HHHHhcCchHHH
Q psy12638 187 ELMLKNRQLELL 198 (334)
Q Consensus 187 ~~i~~~~gl~~L 198 (334)
...++.-++...
T Consensus 237 ~~~~~~l~~~~~ 248 (268)
T PF08324_consen 237 KQLAKSLDVKSV 248 (268)
T ss_dssp HHHCCCCTHHHH
T ss_pred HHHHHHcChHHH
Confidence 666654344443
No 142
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=63.63 E-value=44 Score=32.49 Aligned_cols=100 Identities=17% Similarity=0.294 Sum_probs=63.9
Q ss_pred hhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHH
Q psy12638 225 HYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFY 304 (334)
Q Consensus 225 ~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~ 304 (334)
++|.+-+..+++-+. . ....-+-+. ++.-|++-+.+++++..|..+|.++.+.+-+....+|+-.-+-++.+++
T Consensus 17 ~rf~Dev~ylld~l~-~-~~~~s~Rr~----sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~ 90 (361)
T PF07814_consen 17 QRFADEVEYLLDGLE-S-SSSSSVRRS----SLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILY 90 (361)
T ss_pred hhHHHHHHHHHhhcc-c-CCCccHHHH----HHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHH
Confidence 447777777777665 2 223333443 3445566677999999999999999999999755554433333455556
Q ss_pred HHHcCchhhHHHhhcCCcHHHHHHhhh
Q psy12638 305 QICRHASCQNYLIKETDAPAYMIDLLN 331 (334)
Q Consensus 305 ~l~~~~~~~~~i~~~~~i~~~Li~LL~ 331 (334)
.++...... .++.+.....-++.|+.
T Consensus 91 ~l~~d~~~~-~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 91 VLSRDGLNM-HLLLDRDSLRLLLKLLK 116 (361)
T ss_pred HHccCCcch-hhhhchhHHHHHHHHhc
Confidence 665555454 45455566655577776
No 143
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=63.31 E-value=13 Score=22.33 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=23.7
Q ss_pred chHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638 278 TVDLLINLLKEMQEDDEIVLQILYVFYQICRH 309 (334)
Q Consensus 278 ~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~ 309 (334)
++|.+.++++ -+++++-..++.+++.++.+
T Consensus 1 llp~l~~~l~--D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLN--DPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT---SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcC--CCCHHHHHHHHHHHHHHHhh
Confidence 4788999997 34568888899999999865
No 144
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=63.23 E-value=6.5 Score=32.12 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=49.2
Q ss_pred cchHHHhhc-cCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHH
Q psy12638 72 LIEKLPRIL-MIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYH 136 (334)
Q Consensus 72 ~I~~Lv~LL-~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~ 136 (334)
++..|+++| .+.++..+..|..=|.-+.. .|+.|..+-+.|+=+.+.+|+. +++.+.-|+..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 567899999 55566777777777777765 4888999989999999999995 55677777775443
No 145
>KOG2611|consensus
Probab=62.62 E-value=67 Score=32.68 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=85.8
Q ss_pred cchhhHHHhHhCCcchHHHhhccCC-------ChhHHHHHHHHHHhhcCChhH--HHHHHhcCChHHHHHhcc---CCc-
Q psy12638 59 VYHVNKEQMANLNLIEKLPRILMIE-------DSNLQSSTLKLLFNLSFDTNL--REKIIKIGFLPKLVSLLE---EGK- 125 (334)
Q Consensus 59 i~~enk~~m~~~g~I~~Lv~LL~~~-------~~~l~~~al~~L~NLS~d~~~--r~~iv~~g~Ip~Lv~lL~---~~~- 125 (334)
+..-||..+.++=..+.+-++|.++ +...+..++.+|.-.+.+++. .++|+ +.||.|.+++. +++
T Consensus 44 i~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~ 121 (698)
T KOG2611|consen 44 IVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDY 121 (698)
T ss_pred hhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--HhhhHHHHHHHhcCCCch
Confidence 4556888888888888888998664 335688899999999999865 55665 56999999993 444
Q ss_pred -----hHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638 126 -----HQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL 179 (334)
Q Consensus 126 -----~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL 179 (334)
..+-+-.-||..+..+.+......+|+++.+.++-. .++-..+. ++++.+.|
T Consensus 122 e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~-~~~~~~d~-alal~Vll 178 (698)
T KOG2611|consen 122 EDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE-LPDGSHDM-ALALKVLL 178 (698)
T ss_pred hhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh-CCCCchhH-HHHHHHHH
Confidence 244577789999999988888899999999987654 44434323 34555543
No 146
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=62.37 E-value=1.4e+02 Score=28.08 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=17.6
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhc
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLS 99 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS 99 (334)
-+++.+..++.+.+..++..|+.+|.++-
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~~ 102 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAADALGELG 102 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccC
Confidence 45666666666666666666666555443
No 147
>KOG1788|consensus
Probab=60.11 E-value=55 Score=36.57 Aligned_cols=240 Identities=15% Similarity=0.190 Sum_probs=129.4
Q ss_pred cchHHHh-hccCCChhHHHHHHHHHHhh-cCChhHHHHHHhcCChHHHHHhc-cCCc-hHHHHHHHHH----HccCChhh
Q psy12638 72 LIEKLPR-ILMIEDSNLQSSTLKLLFNL-SFDTNLREKIIKIGFLPKLVSLL-EEGK-HQKIILQLLY----HLSIEDRV 143 (334)
Q Consensus 72 ~I~~Lv~-LL~~~~~~l~~~al~~L~NL-S~d~~~r~~iv~~g~Ip~Lv~lL-~~~~-~~~~al~~L~----~LS~~~~~ 143 (334)
++..|-. +|++.+++++...+..++.+ +.|++|-....+.--+|.+|.-+ +.|. .|...+.+|- .+++.+ .
T Consensus 467 AvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvP-e 545 (2799)
T KOG1788|consen 467 AVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVP-E 545 (2799)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCc-H
Confidence 3333443 56888899999998888876 55789998888999999998777 5553 3333333221 122222 1
Q ss_pred hhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH-ccCcchHHHHHhcCchHHHHHHHhc-----CChHHHHHHHHHH
Q psy12638 144 KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL-ALNSRNAELMLKNRQLELLMIQAFT-----QKNILLLKVIRNM 217 (334)
Q Consensus 144 r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL-s~~~~n~~~i~~~~gl~~Lv~~l~~-----~~d~~~~k~l~nL 217 (334)
|+. -.|--+|.+.-....+...+..++.| +.|.+.+..+.+-|.+..|-+.+.. |.|.. ..+
T Consensus 546 qEL-------lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy-----sgv 613 (2799)
T KOG1788|consen 546 QEL-------LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY-----SGV 613 (2799)
T ss_pred HHH-------HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh-----hhH
Confidence 111 13455666554556655555677766 7888888888888877777555432 22221 012
Q ss_pred hcCC-Cchhh--hhhhHHHHHHH------hhcCCccchhHHhhcHHHH-HHHH-HHhcCCcchHHHhhhCCchHHHHHHh
Q psy12638 218 SIHS-NVKHY--FVDYIGDIANC------VQKEKDENIKLECLGTLEV-INFI-GTAASDPISAEHFCKNSTVDLLINLL 286 (334)
Q Consensus 218 a~~~-~~~~~--f~~~i~~L~~~------l~~~~~~~~~ve~Lg~lea-v~~l-g~la~~~~~~~~l~~~g~I~~Lv~LL 286 (334)
+.|. .+.+. |.+.+..=..+ ..++.++..+.+.+-++-+ -.++ ..+-++.++.+++.+.+++..++..+
T Consensus 614 sehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl 693 (2799)
T KOG1788|consen 614 SEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL 693 (2799)
T ss_pred HHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee
Confidence 2221 11111 32222211111 2223344555555444311 1233 33445677888999998888777777
Q ss_pred ccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhc
Q psy12638 287 KEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLND 332 (334)
Q Consensus 287 ~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d 332 (334)
-+ -+-.--++|++.++-+- ++.+- +...+- .++++|+|
T Consensus 694 in-dehRSslLrivscLitv---dpkqv---hhqelm-alVdtLks 731 (2799)
T KOG1788|consen 694 IN-DEHRSSLLRIVSCLITV---DPKQV---HHQELM-ALVDTLKS 731 (2799)
T ss_pred ec-hHHHHHHHHHHHHHhcc---Ccccc---cHHHHH-HHHHHHHh
Confidence 32 11123455565555443 33321 111222 56777776
No 148
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=58.38 E-value=11 Score=30.14 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHH
Q psy12638 255 EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVL 297 (334)
Q Consensus 255 eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vl 297 (334)
+.+..+..+|..|+.=..+++.|+++.|++||.- +.-|+..
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~H--eN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSH--ENTDIAI 105 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCC--CCcceeh
Confidence 5678889999999988899999999999999973 3334544
No 149
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=57.25 E-value=2.9e+02 Score=30.10 Aligned_cols=56 Identities=25% Similarity=0.215 Sum_probs=47.4
Q ss_pred hHhCCcchHHHhhccC-----CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc
Q psy12638 67 MANLNLIEKLPRILMI-----EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 67 m~~~g~I~~Lv~LL~~-----~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
|.+.|.++.++.++++ ...++....+++|.-.+.-+.||.++.+.|+|+.|.+.|.
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~ 173 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLN 173 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHH
Confidence 4568999999998876 4457888888888888888999999999999999998883
No 150
>KOG1517|consensus
Probab=55.97 E-value=1e+02 Score=34.29 Aligned_cols=117 Identities=14% Similarity=0.039 Sum_probs=89.7
Q ss_pred cccccchhhhcccCCcceeecccC-------cchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCC-ChhHHHHH
Q psy12638 21 TRNAGVKAQRFDRGNCNCYGLIVP-------KSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIE-DSNLQSST 91 (334)
Q Consensus 21 ~~~~~~~~~~~~r~~~~~~~~~~~-------~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~-~~~l~~~a 91 (334)
-.++++++..++-.|-..++.+.. ++|.-|+..|..+.- |+--...-.+.+.|..-...+.++ .+-+++=.
T Consensus 541 AvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~ 620 (1387)
T KOG1517|consen 541 AVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWL 620 (1387)
T ss_pred hcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHH
Confidence 367889999887777777766543 677777777766543 455666677889999888888885 57778888
Q ss_pred HHHHHhhcCC-hhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHc
Q psy12638 92 LKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHL 137 (334)
Q Consensus 92 l~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~L 137 (334)
.-+|.-|=.| ++.|-.=++.++.++|..+|.++ +.|..|+..|..+
T Consensus 621 ~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtf 669 (1387)
T KOG1517|consen 621 CICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTF 669 (1387)
T ss_pred HHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 8899999888 58888888999999999999754 5676666666665
No 151
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=55.70 E-value=48 Score=32.24 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=66.7
Q ss_pred chHHHhhcc-CCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc-CC---chHHHHHHHHHHccCChhhhhHh
Q psy12638 73 IEKLPRILM-IEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE-EG---KHQKIILQLLYHLSIEDRVKAMF 147 (334)
Q Consensus 73 I~~Lv~LL~-~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~-~~---~~~~~al~~L~~LS~~~~~r~~i 147 (334)
|+.++.=+. +....+++.++--|+.-..|++.|..+...|.+.++.+.+. .+ ...-.+++++|-++.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 344443333 44557899999899999999999999999999999999993 22 23445677888888887666666
Q ss_pred hccCcHHHHHHHhc
Q psy12638 148 AYTNCMSLLMNMLL 161 (334)
Q Consensus 148 ~~t~~i~~Lv~LL~ 161 (334)
-..++...+.+++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 66667777788886
No 152
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=54.58 E-value=75 Score=29.17 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=91.0
Q ss_pred cccCcchhHHHHHH-HhcccchhhHHHh-HhCCcchHHHh------------hccCCChhHHHHHHHHHHhhcCChhHHH
Q psy12638 41 LIVPKSKREGRQDS-RKLSVYHVNKEQM-ANLNLIEKLPR------------ILMIEDSNLQSSTLKLLFNLSFDTNLRE 106 (334)
Q Consensus 41 ~~~~~~~~~A~~~L-~~LSi~~enk~~m-~~~g~I~~Lv~------------LL~~~~~~l~~~al~~L~NLS~d~~~r~ 106 (334)
+++..+|++|+--| +|.--+++=.-.+ ...|+...|.+ .+......-.++|+.+|--++.+|+.|.
T Consensus 56 lv~g~~kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~ 135 (315)
T COG5209 56 LVVGNPKEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKK 135 (315)
T ss_pred HhcCCHHHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchhe
Confidence 45567777776555 2322222222222 22355555544 2333445678999999999999999999
Q ss_pred HHHhcCChHHHHHhcc----CC---chHHHHHHHHHHccCCh--hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHH
Q psy12638 107 KIIKIGFLPKLVSLLE----EG---KHQKIILQLLYHLSIED--RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCI 177 (334)
Q Consensus 107 ~iv~~g~Ip~Lv~lL~----~~---~~~~~al~~L~~LS~~~--~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~ 177 (334)
.++++.+==-+-++|. +. -.|-.++++...|-.++ ..-...-.|+.+|...+++..+ ++..+.++..+.
T Consensus 136 ~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g--SElSktvaifI~ 213 (315)
T COG5209 136 VFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG--SELSKTVAIFIF 213 (315)
T ss_pred eeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh--hHHHHHHHHHHH
Confidence 9998876445556663 11 23666788888776553 3334445689999999999864 455454433333
Q ss_pred -HHccCcchHHHHHh
Q psy12638 178 -NLALNSRNAELMLK 191 (334)
Q Consensus 178 -nLs~~~~n~~~i~~ 191 (334)
..-.|+-.-+-+++
T Consensus 214 qkil~dDvGLqYiCq 228 (315)
T COG5209 214 QKILGDDVGLQYICQ 228 (315)
T ss_pred HHHhccchhHHHHHH
Confidence 33556666666665
No 153
>KOG0301|consensus
Probab=54.40 E-value=1.3e+02 Score=31.78 Aligned_cols=128 Identities=18% Similarity=0.134 Sum_probs=72.1
Q ss_pred CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc---c--C-CchHHHHHHHHHHccCC--h
Q psy12638 70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL---E--E-GKHQKIILQLLYHLSIE--D 141 (334)
Q Consensus 70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL---~--~-~~~~~~al~~L~~LS~~--~ 141 (334)
...+..++..+. .++..+-.++|+|.|+-.|+-.++-+.+. ...+..-+ + + ..++.....+.+|+|.- .
T Consensus 588 ~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~ 664 (745)
T KOG0301|consen 588 QNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQ 664 (745)
T ss_pred hHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHh
Confidence 346666666665 55778889999999999998888877765 22222222 1 1 22333333344455432 2
Q ss_pred hhhhHhhccCcHHHHHHHhccCCCCchHHH----HHHHHHHHccCcchHHHHHhcCchHHHHHHHhc
Q psy12638 142 RVKAMFAYTNCMSLLMNMLLVEQDDETDNV----LVALCINLALNSRNAELMLKNRQLELLMIQAFT 204 (334)
Q Consensus 142 ~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~----~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~ 204 (334)
.+-. .++.+.+...+.+..++.-..| .+..+-||...+.+..+++..-.+..+++.+.+
T Consensus 665 ~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 665 DNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred cccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHH
Confidence 1111 3455555555543322221123 223344788888888888877677766666543
No 154
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=53.45 E-value=2.3e+02 Score=27.87 Aligned_cols=90 Identities=21% Similarity=0.167 Sum_probs=59.1
Q ss_pred chHHHhhccCCCh---hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc---CCchHHHHHHHHHHccCC-hhhh-
Q psy12638 73 IEKLPRILMIEDS---NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE---EGKHQKIILQLLYHLSIE-DRVK- 144 (334)
Q Consensus 73 I~~Lv~LL~~~~~---~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~---~~~~~~~al~~L~~LS~~-~~~r- 144 (334)
+|.+...|+..+. .-.+.++.+|..+|.+++..+.++- .++.++-..++ +.+.....+..|+.+-.. .+..
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 4677788877666 6789999999999999998888776 66666666665 334445556666666322 1111
Q ss_pred ----hHhhccCcHHHHHHHhccC
Q psy12638 145 ----AMFAYTNCMSLLMNMLLVE 163 (334)
Q Consensus 145 ----~~i~~t~~i~~Lv~LL~~~ 163 (334)
....+...+|.+.++....
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~ 102 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQA 102 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhh
Confidence 2222233788888877543
No 155
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=52.94 E-value=1.7e+02 Score=28.77 Aligned_cols=76 Identities=12% Similarity=0.256 Sum_probs=58.1
Q ss_pred HHHHHHHhc-CCcchHHHhhhCCchHHHHHHhc-ccc-CCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhc
Q psy12638 256 VINFIGTAA-SDPISAEHFCKNSTVDLLINLLK-EMQ-EDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLND 332 (334)
Q Consensus 256 av~~lg~la-~~~~~~~~l~~~g~I~~Lv~LL~-~~~-~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d 332 (334)
|+..+..+- ++|.+-..+.+.|+++.+.+-+. .+- -..|.+..+--+|+.+|-|+...+.+.+. +....+.+.+.+
T Consensus 129 a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~-~~l~~~f~if~s 207 (379)
T PF06025_consen 129 AINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSS-NPLDKLFEIFTS 207 (379)
T ss_pred HHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhc-ChHHHHHHHhCC
Confidence 444445544 48888889999999999988777 333 34588888999999999999999877765 555577777654
No 156
>KOG2137|consensus
Probab=52.52 E-value=57 Score=34.45 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=86.4
Q ss_pred HHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc-cC--Cch
Q psy12638 51 RQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL-EE--GKH 126 (334)
Q Consensus 51 ~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL-~~--~~~ 126 (334)
+.+++|+.. ...-+.+=+...++|.|.+-+++.+..+|+.++..+-+.+.--+ ...++.-++|++-.+. ++ ...
T Consensus 368 l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~v 445 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYV 445 (700)
T ss_pred hhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHH
Confidence 444555542 22233334455678888888999999999999999999987544 6667777899998886 22 233
Q ss_pred HHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcC
Q psy12638 127 QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQ 205 (334)
Q Consensus 127 ~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~ 205 (334)
+..++-.+.-+. +......-.+-++++.+-... .++.+.-....+..++....-+.+.+.....+|.++-+..++
T Consensus 446 kvn~L~c~~~l~---q~lD~~~v~d~~lpi~~~~~~-~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 446 KVNVLPCLAGLI---QRLDKAAVLDELLPILKCIKT-RDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 444444454444 233333223344444444332 344443334445556655555533333335777777666554
No 157
>KOG4151|consensus
Probab=52.49 E-value=69 Score=34.16 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=82.0
Q ss_pred HHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHh-cCChHHHHHhccC--
Q psy12638 49 EGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIK-IGFLPKLVSLLEE-- 123 (334)
Q Consensus 49 ~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~-~g~Ip~Lv~lL~~-- 123 (334)
+++-.+.+|+. ...-|..|.+.-.++.+-.++..+++.++..|+.++.||...+ -....+++ ....|-...++..
T Consensus 561 E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~ 640 (748)
T KOG4151|consen 561 EALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVAD 640 (748)
T ss_pred HHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhh
Confidence 77788888885 4557888999989998888888999999999999999999998 44555555 5666666666643
Q ss_pred CchHHHHHHHHHHc-cCChhhhh-HhhccCcHHHHHHHhccCCCCchHH
Q psy12638 124 GKHQKIILQLLYHL-SIEDRVKA-MFAYTNCMSLLMNMLLVEQDDETDN 170 (334)
Q Consensus 124 ~~~~~~al~~L~~L-S~~~~~r~-~i~~t~~i~~Lv~LL~~~~~~~~~~ 170 (334)
+.+.-.+++.+-.+ |.++..+. .-.-......++.++.+ .+.+.+.
T Consensus 641 E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~-~~~~~qh 688 (748)
T KOG4151|consen 641 EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD-EDDEIQH 688 (748)
T ss_pred hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC-chhhhhh
Confidence 23333344445523 44454444 33335566677777764 3444433
No 158
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=51.10 E-value=1.6e+02 Score=25.26 Aligned_cols=87 Identities=22% Similarity=0.379 Sum_probs=56.2
Q ss_pred ChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHhhccCc-HHHHHHHh
Q psy12638 84 DSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNC-MSLLMNML 160 (334)
Q Consensus 84 ~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i~~t~~-i~~Lv~LL 160 (334)
|+.++.+++.+++-|+.-- ..++ ...+|.+...|+++ ..|..|+.+|.+|-..+-.|.. |- +..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~---~~~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY---PNLV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC---cHHH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence 5678999999999888632 1222 23578899999654 6799999999999665422221 22 35666666
Q ss_pred ccCCCCchHHHHHHHHHHH
Q psy12638 161 LVEQDDETDNVLVALCINL 179 (334)
Q Consensus 161 ~~~~~~~~~~~~~~ll~nL 179 (334)
. ++++++...+...+..+
T Consensus 73 ~-D~~~~Ir~~A~~~~~e~ 90 (178)
T PF12717_consen 73 V-DENPEIRSLARSFFSEL 90 (178)
T ss_pred c-CCCHHHHHHHHHHHHHH
Confidence 4 46667655443444443
No 159
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=50.88 E-value=3.5e+02 Score=29.20 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=62.1
Q ss_pred hHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCc
Q psy12638 48 REGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGK 125 (334)
Q Consensus 48 ~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~ 125 (334)
..|++++..+-+. -.-..+++++.+++.++++.+++.|+-++.++=. -.+.-..+.|.+-.+..++. +|.
T Consensus 110 ~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~~l~~D~dP~ 181 (757)
T COG5096 110 GFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILKELVADSDPI 181 (757)
T ss_pred HHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHHHHhhCCCch
Confidence 3666666664321 1223478899999999999999999999888852 33444556789999999994 677
Q ss_pred hHHHHHHHHHHccCC
Q psy12638 126 HQKIILQLLYHLSIE 140 (334)
Q Consensus 126 ~~~~al~~L~~LS~~ 140 (334)
....|+..|+.+--.
T Consensus 182 Vi~nAl~sl~~i~~e 196 (757)
T COG5096 182 VIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHhchh
Confidence 888888888877544
No 160
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=49.96 E-value=34 Score=29.29 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=52.5
Q ss_pred hHhCCcchHHHhhccC---------CChhHHHHHHHHHHhhcCChhHHHHHHh-cCChHHHHHhccCC--chHHHHHHHH
Q psy12638 67 MANLNLIEKLPRILMI---------EDSNLQSSTLKLLFNLSFDTNLREKIIK-IGFLPKLVSLLEEG--KHQKIILQLL 134 (334)
Q Consensus 67 m~~~g~I~~Lv~LL~~---------~~~~l~~~al~~L~NLS~d~~~r~~iv~-~g~Ip~Lv~lL~~~--~~~~~al~~L 134 (334)
..+.|++..|+.+|.. .+.+.+..++++|..+.-+...+..+.+ .++|+.|+..|.++ ..+..++-+|
T Consensus 103 Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL 182 (187)
T PF06371_consen 103 FLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEIL 182 (187)
T ss_dssp H-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3467888988887733 3447888999999999988876777775 89999999999655 4567777776
Q ss_pred HHcc
Q psy12638 135 YHLS 138 (334)
Q Consensus 135 ~~LS 138 (334)
.-+|
T Consensus 183 ~~lc 186 (187)
T PF06371_consen 183 AALC 186 (187)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 161
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=49.75 E-value=31 Score=28.87 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=54.2
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhccC--------CchHHHHHHHHHHcc
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLLEE--------GKHQKIILQLLYHLS 138 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL~~--------~~~~~~al~~L~~LS 138 (334)
.++..+.+-+.++++.++-.|+.+|--++.+ +....++.+.+++.-|++++.. +..+...+.++..-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999998 4789999999999999999942 234555666555544
No 162
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=49.65 E-value=75 Score=32.26 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=39.4
Q ss_pred cCChHHHHHhccCCchHHHHHHHHHHccCCh-hhh----hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638 111 IGFLPKLVSLLEEGKHQKIILQLLYHLSIED-RVK----AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL 179 (334)
Q Consensus 111 ~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~-~~r----~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL 179 (334)
.++++.+++-++.|..-..-++ -++.|+ +.+ .-+.+++-|+.|+++|....+.+.+..+..++.-+
T Consensus 20 ~~~v~~llkHI~~~~ImDlLLk---lIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aI 90 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPAIMDLLLK---LISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAI 90 (475)
T ss_pred ccHHHHHHHhcCCcHHHHHHHH---HHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 5666667777766655443333 334443 333 34456889999999998555556655554444433
No 163
>KOG1062|consensus
Probab=49.61 E-value=3.7e+02 Score=29.12 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=66.0
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc--CCc
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE--EGK 125 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~--~~~ 125 (334)
-|+..|.+++.- +| ...+.|-..++++..++-+++.|+-+++.+=.- |+.-+. ++|+-.++|. ++.
T Consensus 126 lAL~alg~i~s~-----Em-ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hG 194 (866)
T KOG1062|consen 126 LALCALGNICSP-----EM-ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHG 194 (866)
T ss_pred HHHHHhhccCCH-----HH-hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCc
Confidence 456666665432 11 223567777899999999999999888877653 444333 5677777773 555
Q ss_pred hHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhc
Q psy12638 126 HQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLL 161 (334)
Q Consensus 126 ~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~ 161 (334)
.-..++.+++.++.. ++.-..|.. +++.+|..|+
T Consensus 195 VL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk 229 (866)
T KOG1062|consen 195 VLIAGLHLITELCKISPDALSYFRD--LVPSLVKILK 229 (866)
T ss_pred eeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHH
Confidence 555677788888764 445555544 8888888875
No 164
>KOG1078|consensus
Probab=49.27 E-value=3e+02 Score=29.73 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=46.8
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccCCh
Q psy12638 75 KLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIED 141 (334)
Q Consensus 75 ~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~ 141 (334)
.+-.++.++.+-+.-.|.++..+|..- +-..+.. .+..|-.++.+|. .|..|..+|+.+++-.
T Consensus 249 fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 249 FLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred HHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC
Confidence 344567778888888999999998852 2222222 7888888898775 6899999999998754
No 165
>KOG2259|consensus
Probab=48.28 E-value=97 Score=32.74 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=90.8
Q ss_pred hhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHcc
Q psy12638 62 VNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLS 138 (334)
Q Consensus 62 enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS 138 (334)
+-...|..+|+...++.=|...--+++..|+..++.|+.. |..-.. .+.-||++++++ +.|..|+..|-.+|
T Consensus 364 ~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is 438 (823)
T KOG2259|consen 364 EEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMIS 438 (823)
T ss_pred ccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3445578889999999999888889999999999999975 333222 356788999765 56888888888888
Q ss_pred CChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcC--ChHHHHHHHHH
Q psy12638 139 IEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQ--KNILLLKVIRN 216 (334)
Q Consensus 139 ~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~--~d~~~~k~l~n 216 (334)
..-..|+. -++.+.+-|.. ...++..+...++-|.-..+.++-.|+ +..|++.+-.. +.+.++++++.
T Consensus 439 ~~l~i~ee-----ql~~il~~L~D-~s~dvRe~l~elL~~~~~~d~~~i~m~----v~~lL~~L~kyPqDrd~i~~cm~~ 508 (823)
T KOG2259|consen 439 VHLAIREE-----QLRQILESLED-RSVDVREALRELLKNARVSDLECIDMC----VAHLLKNLGKYPQDRDEILRCMGR 508 (823)
T ss_pred HHheecHH-----HHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCcHHHHHHH----HHHHHHHhhhCCCCcHHHHHHHHH
Confidence 76333322 35555555542 445555544445555433333333332 22233333222 22356777777
Q ss_pred HhcCCCc
Q psy12638 217 MSIHSNV 223 (334)
Q Consensus 217 La~~~~~ 223 (334)
+.++.+.
T Consensus 509 iGqnH~~ 515 (823)
T KOG2259|consen 509 IGQNHRR 515 (823)
T ss_pred HhccChh
Confidence 7766543
No 166
>KOG0301|consensus
Probab=48.02 E-value=1.6e+02 Score=31.17 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhhc----CChhHHHHHHhcCChHHHHHhcc-CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHh
Q psy12638 86 NLQSSTLKLLFNLS----FDTNLREKIIKIGFLPKLVSLLE-EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNML 160 (334)
Q Consensus 86 ~l~~~al~~L~NLS----~d~~~r~~iv~~g~Ip~Lv~lL~-~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL 160 (334)
+.+-.|+.+|--+. .+.-....-....++..+++.++ ++..+-.+++.|.|+=.+.-++.-|..+ ...+.+.+
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~~~ 636 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLFSNPAGRELFMSR--LESILDPV 636 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhhhh
Confidence 34444555444333 33333333334456666776664 6777888999999998888777777654 33333322
Q ss_pred ---ccCCCCchHHHHHHHHHHHccC--cchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhhhhhhHHHHH
Q psy12638 161 ---LVEQDDETDNVLVALCINLALN--SRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIA 235 (334)
Q Consensus 161 ---~~~~~~~~~~~~~~ll~nLs~~--~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f~~~i~~L~ 235 (334)
.+.++..++...+.++.|+|.. ..+.+ .++.+.+......
T Consensus 637 ~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~------------------------------- 681 (745)
T KOG0301|consen 637 IEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAIST------------------------------- 681 (745)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHh-------------------------------
Confidence 2233344444444455554311 11111 2233322222111
Q ss_pred HHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcccc
Q psy12638 236 NCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQ 290 (334)
Q Consensus 236 ~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~ 290 (334)
+ ....+++ | .+.....|+|+++..+.....+.+.--|.++..-++...
T Consensus 682 --~-~e~~~d~--E--A~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 682 --L-LEPVDDL--E--AIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred --h-cccchhH--H--HHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhc
Confidence 0 0111222 2 111245788999998877777777666899998888644
No 167
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=45.03 E-value=71 Score=30.10 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=50.9
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccCChhhhhHhh
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIEDRVKAMFA 148 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~~~r~~i~ 148 (334)
..++.+.+++.+++..++..|...|..+. ..-++|.+..++.++. .+..|+..|.++-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELGDP-------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence 57888889999988888888776644332 3456788888886543 455555544443332
Q ss_pred ccCcHHHHHHHhccCCCCchHH
Q psy12638 149 YTNCMSLLMNMLLVEQDDETDN 170 (334)
Q Consensus 149 ~t~~i~~Lv~LL~~~~~~~~~~ 170 (334)
.+++.|+.++.+.++..+..
T Consensus 105 --~a~~~li~~l~~d~~~~vR~ 124 (335)
T COG1413 105 --EAVPPLVELLENDENEGVRA 124 (335)
T ss_pred --hHHHHHHHHHHcCCcHhHHH
Confidence 27788888887534444433
No 168
>KOG2073|consensus
Probab=44.48 E-value=3.1e+02 Score=30.04 Aligned_cols=168 Identities=12% Similarity=0.178 Sum_probs=86.6
Q ss_pred HHHHHHhcCChHHHHHhcc---CCchHHHHHHHHHHccCC-------hhhhhHhhccCcHHHHHHHhccCCCCchHHHHH
Q psy12638 104 LREKIIKIGFLPKLVSLLE---EGKHQKIILQLLYHLSIE-------DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLV 173 (334)
Q Consensus 104 ~r~~iv~~g~Ip~Lv~lL~---~~~~~~~al~~L~~LS~~-------~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~ 173 (334)
+-.-|.+...||+++.++. +++.+..|-.+|+-+... +..-.+++.+++|..|+..+..
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~----------- 250 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLE----------- 250 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHcc-----------
Confidence 3344456789999999994 456666666666666443 1233445555556655555543
Q ss_pred HHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHH-HHHHHhcCCCc-----h----hhhhhhHHHHHHHhhcCCc
Q psy12638 174 ALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLK-VIRNMSIHSNV-----K----HYFVDYIGDIANCVQKEKD 243 (334)
Q Consensus 174 ~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k-~l~nLa~~~~~-----~----~~f~~~i~~L~~~l~~~~~ 243 (334)
+.+....++. |+..++..+....+..-.- ....+++-... . ..|.+.++++.+++.+.+.
T Consensus 251 --------~~~s~s~lVs--~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~dF~~lL~~~~~ 320 (838)
T KOG2073|consen 251 --------DGTSLSVLVS--GIIVLISLLNPRRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPRLGDFVQLLLEPEK 320 (838)
T ss_pred --------CCcchhhHHH--HHHHHHHhcCcccccccccceeeeecCCccccCccchHHHHHHHHHHHHHHHHHhcCCcc
Confidence 2222222221 3333333322211110000 00001111000 0 0145667778888877766
Q ss_pred cchhHHhhcHH---------HHHHHHHHhcC--CcchHHHhhhCCchHHHHHHhccccCC
Q psy12638 244 ENIKLECLGTL---------EVINFIGTAAS--DPISAEHFCKNSTVDLLINLLKEMQED 292 (334)
Q Consensus 244 ~~~~ve~Lg~l---------eav~~lg~la~--~~~~~~~l~~~g~I~~Lv~LL~~~~~d 292 (334)
.+.+....|.+ ..+..++.+-. +...-..++..|.+..+.++++...-+
T Consensus 321 ~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~n 380 (838)
T KOG2073|consen 321 LDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWN 380 (838)
T ss_pred chhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchh
Confidence 55444444443 45666666644 344445677888888999999865443
No 169
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=43.97 E-value=55 Score=26.82 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=54.4
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhccCC-----chHHHHHHHHHHccC
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLEEG-----KHQKIILQLLYHLSI 139 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~~~-----~~~~~al~~L~~LS~ 139 (334)
.++..|-+-+.++++.++..|+.+|--++.+. ....++.+...+..|++++.++ ..+..++.++...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 35666777888999999999999999999984 5788888888888899999542 356667777766654
No 170
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=43.05 E-value=49 Score=27.80 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=52.8
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhccC---CchHHHHHHHHHHcc
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLEE---GKHQKIILQLLYHLS 138 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~~---~~~~~~al~~L~~LS 138 (334)
.++..|.+-+.++++.++-.|+.+|--++.+. ....++.+..++.-|++++.. +..+..++.++...+
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 45666777888899999999999999999984 688889999999999999954 234555666555554
No 171
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=43.04 E-value=4.2e+02 Score=27.85 Aligned_cols=226 Identities=12% Similarity=0.140 Sum_probs=114.0
Q ss_pred hccCCCh-hHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhccCC---chHHHHHHHHHHccCChhhhhHhhccCc
Q psy12638 79 ILMIEDS-NLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLLEEG---KHQKIILQLLYHLSIEDRVKAMFAYTNC 152 (334)
Q Consensus 79 LL~~~~~-~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL~~~---~~~~~al~~L~~LS~~~~~r~~i~~t~~ 152 (334)
....+.+ .+++.++.++.+.+.. |+.-.++.+.=++.....-++++ ..|-.+++.|++=. ...|.-|-+.+-
T Consensus 141 nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl--~fv~~nf~~E~e 218 (858)
T COG5215 141 NVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL--MFVQGNFCYEEE 218 (858)
T ss_pred hccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH--HHHHHhhcchhh
Confidence 3333333 5799999999999865 54444444443333333444433 34666777777622 123444444433
Q ss_pred HHHHHHHh---ccCCCCchHHHHHHHHHHH-ccCcchHHHHHhcCchHHHHHHHhcC-ChHHHHHHH--H-HHhc-----
Q psy12638 153 MSLLMNML---LVEQDDETDNVLVALCINL-ALNSRNAELMLKNRQLELLMIQAFTQ-KNILLLKVI--R-NMSI----- 219 (334)
Q Consensus 153 i~~Lv~LL---~~~~~~~~~~~~~~ll~nL-s~~~~n~~~i~~~~gl~~Lv~~l~~~-~d~~~~k~l--~-nLa~----- 219 (334)
.-.+++.. .++++.+++..+..-+..+ .++.+-.+-..+. .+-.|..+-.++ +|.+.+..+ + .++.
T Consensus 219 rNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~nd~va~qavEfWsticeEeid~ 297 (858)
T COG5215 219 RNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDG 297 (858)
T ss_pred hchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhh
Confidence 22232222 2345555544333222222 4455555555553 555555554443 455443321 1 1111
Q ss_pred ------CC-Cchhh--h-----hhhHHHHHHHhhcCC----ccchhH-----Hh----------------hcHH------
Q psy12638 220 ------HS-NVKHY--F-----VDYIGDIANCVQKEK----DENIKL-----EC----------------LGTL------ 254 (334)
Q Consensus 220 ------~~-~~~~~--f-----~~~i~~L~~~l~~~~----~~~~~v-----e~----------------Lg~l------ 254 (334)
-+ .+.|. | .+.++.|+.++.+++ ++++-+ .| +|..
T Consensus 298 ~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~ 377 (858)
T COG5215 298 EMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS 377 (858)
T ss_pred HHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccC
Confidence 11 11122 4 478899999887643 112111 12 2211
Q ss_pred -------HHHHHHHHhcCCc--chHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCc
Q psy12638 255 -------EVINFIGTAASDP--ISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHA 310 (334)
Q Consensus 255 -------eav~~lg~la~~~--~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~ 310 (334)
.++++.|.+-..| ++...++.. .+|.+.+......- -+.-.++.|||+++.|-
T Consensus 378 ~~w~nreaavmAfGSvm~gp~~~~lT~~V~q-alp~i~n~m~D~~l--~vk~ttAwc~g~iad~v 439 (858)
T COG5215 378 ESWANREAAVMAFGSVMHGPCEDCLTKIVPQ-ALPGIENEMSDSCL--WVKSTTAWCFGAIADHV 439 (858)
T ss_pred chhhhHHHHHHHhhhhhcCccHHHHHhhHHh-hhHHHHHhccccee--ehhhHHHHHHHHHHHHH
Confidence 4789999987644 455555544 46767666652211 12333489999998554
No 172
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=42.92 E-value=2.2e+02 Score=30.04 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=78.7
Q ss_pred hCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh----hHHHHHH-hcCChHHHHHhcc--CCchHHHH-----------
Q psy12638 69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT----NLREKII-KIGFLPKLVSLLE--EGKHQKII----------- 130 (334)
Q Consensus 69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~----~~r~~iv-~~g~Ip~Lv~lL~--~~~~~~~a----------- 130 (334)
-.|++|.|..+|+++++.++.+++.++..++-+. ..|+=|. -- -|+++|+ +.+.+..|
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcf----eLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICF----ELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHH----HHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 3689999999999999999999999998887652 2333332 11 2333332 11222222
Q ss_pred ------HHHHHHccCCh-hhh-------hHhhccC----cHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhc
Q psy12638 131 ------LQLLYHLSIED-RVK-------AMFAYTN----CMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKN 192 (334)
Q Consensus 131 ------l~~L~~LS~~~-~~r-------~~i~~t~----~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~ 192 (334)
..+|-||-..+ ..| ...+++. .+|.|+.=-.+ ++..+++.++......-..-.++.. -.-
T Consensus 762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~T-Pe~nVQnGvLkam~fmFeyig~~s~-dYv 839 (975)
T COG5181 762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYET-PEANVQNGVLKAMCFMFEYIGQASL-DYV 839 (975)
T ss_pred CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccC-chhHHHHhHHHHHHHHHHHHHHHHH-HHH
Confidence 22233332211 111 1122221 34444444332 4555555555433322111111110 011
Q ss_pred CchHHHHHHHhcCChHH----HHHHHHHHhcCCCch
Q psy12638 193 RQLELLMIQAFTQKNIL----LLKVIRNMSIHSNVK 224 (334)
Q Consensus 193 ~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~~~~~ 224 (334)
-.+.||++-+....|++ .+.+++.++-+.+..
T Consensus 840 y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 840 YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc
Confidence 24667777788778874 588899999885543
No 173
>KOG2274|consensus
Probab=42.67 E-value=5e+02 Score=28.63 Aligned_cols=138 Identities=9% Similarity=0.060 Sum_probs=82.5
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc----cCCchHHHHHHHHHHccCChhhhhH
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL----EEGKHQKIILQLLYHLSIEDRVKAM 146 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL----~~~~~~~~al~~L~~LS~~~~~r~~ 146 (334)
++++-|.++.+.-..++...-+.+|+-...-+--.....+.-+.|-...+. .+|.....+--++..|+....+-.-
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~ 609 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP 609 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc
Confidence 556678888887778888888888888876555556666777888777776 3565555555556666654333222
Q ss_pred hhccCcHHHHHHHhccCCC---CchHHHHHHHHHHH---ccCcchHHHHHhcCchHHHHHHHhcCChHHHH
Q psy12638 147 FAYTNCMSLLMNMLLVEQD---DETDNVLVALCINL---ALNSRNAELMLKNRQLELLMIQAFTQKNILLL 211 (334)
Q Consensus 147 i~~t~~i~~Lv~LL~~~~~---~~~~~~~~~ll~nL---s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~ 211 (334)
+. .-+||.++..+....+ ......++.++--+ .-.+=+...++. +||++.+....+.|...+
T Consensus 610 m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~--~FpaVak~tlHsdD~~tl 677 (1005)
T KOG2274|consen 610 MQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY--AFPAVAKITLHSDDHETL 677 (1005)
T ss_pred hH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH--HhHHhHhheeecCChHHH
Confidence 21 1289999999975321 12111111222111 122222333443 899999998887776543
No 174
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=42.05 E-value=3.5e+02 Score=28.70 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=36.2
Q ss_pred CchHHHHHHhccccCCchHHHHHHHHHHHHHcCchh---hHHHhhcCCcHHHHHHhhhcCC
Q psy12638 277 STVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC---QNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~---~~~i~~~~~i~~~Li~LL~d~n 334 (334)
|++|.|--+|+++.+ .++...+-.++++|.+.+. ...-+. |--.|+|+|++-|
T Consensus 688 ~ilP~ltPILrnkh~--Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~n 743 (975)
T COG5181 688 GILPSLTPILRNKHQ--KVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWN 743 (975)
T ss_pred hccccccHhhhhhhH--HHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhh
Confidence 689999999997653 6777778899999866653 112222 3346777777644
No 175
>KOG1241|consensus
Probab=41.21 E-value=4.9e+02 Score=28.12 Aligned_cols=108 Identities=9% Similarity=0.133 Sum_probs=64.4
Q ss_pred chHHHHHHHhcCChH----HHHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcch
Q psy12638 194 QLELLMIQAFTQKNI----LLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPIS 269 (334)
Q Consensus 194 gl~~Lv~~l~~~~d~----~~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~ 269 (334)
.++..+...+.+.+| .+..++..+|.-+-+...+++.+..|++.+.+.... .+-+. +..++|-+|.+-+.
T Consensus 90 qVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~-~~k~~-----slealGyice~i~p 163 (859)
T KOG1241|consen 90 QVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQAS-MVKES-----SLEALGYICEDIDP 163 (859)
T ss_pred HHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccch-HHHHH-----HHHHHHHHHccCCH
Confidence 344445555555554 357788888888777777888999999888665543 22222 55677888885443
Q ss_pred HHHhhhCC-chHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy12638 270 AEHFCKNS-TVDLLINLLKEMQEDDEIVLQILYVFYQIC 307 (334)
Q Consensus 270 ~~~l~~~g-~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~ 307 (334)
..+..+.+ ++-.++.=.+....+..+-+....|++.=+
T Consensus 164 evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsL 202 (859)
T KOG1241|consen 164 EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSL 202 (859)
T ss_pred HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHH
Confidence 34444444 333344444433344567777777766543
No 176
>KOG1832|consensus
Probab=41.20 E-value=1.4e+02 Score=32.75 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=62.5
Q ss_pred HHHHhcccchhhHHHhHhCCcchH---HHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc-CCchH
Q psy12638 52 QDSRKLSVYHVNKEQMANLNLIEK---LPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE-EGKHQ 127 (334)
Q Consensus 52 ~~L~~LSi~~enk~~m~~~g~I~~---Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~-~~~~~ 127 (334)
.+|.-|..+.|--.-..+.|+=.. +.++-+-++..+.-.+++.|+.|+-+...-..+|+.|+|.+|...=+ +....
T Consensus 331 q~l~~lgey~e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~~~~ 410 (1516)
T KOG1832|consen 331 QCLEILGEYVEVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETFY 410 (1516)
T ss_pred HHHHHHHhHHHHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchhhhh
Confidence 444444444444444556665443 33444556778899999999999999999999999999998887765 33445
Q ss_pred HHHHHHHHHccCChhh
Q psy12638 128 KIILQLLYHLSIEDRV 143 (334)
Q Consensus 128 ~~al~~L~~LS~~~~~ 143 (334)
.++.+ ||.++.....
T Consensus 411 g~s~c-ly~~~~~q~~ 425 (1516)
T KOG1832|consen 411 GLSSC-LYTIGSLQGI 425 (1516)
T ss_pred hHHHH-HHHHhhhhhH
Confidence 55555 7777766543
No 177
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=40.02 E-value=50 Score=27.64 Aligned_cols=70 Identities=20% Similarity=0.318 Sum_probs=56.0
Q ss_pred CCcchHHHhhccCCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhcc---CCchHHHHHHHHHHccC
Q psy12638 70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLLE---EGKHQKIILQLLYHLSI 139 (334)
Q Consensus 70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL~---~~~~~~~al~~L~~LS~ 139 (334)
..++..|.+-+.++++.++-.|+.+|--+..+ .....++.+.+++..|++++. ++..+..++.++..-+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 34566677788889999999999999999998 468899999999999999995 23456667776666653
No 178
>KOG1240|consensus
Probab=38.73 E-value=3.7e+02 Score=30.65 Aligned_cols=183 Identities=14% Similarity=0.211 Sum_probs=89.2
Q ss_pred hHHHHHhc---cCCchHHHHHHHHHHccCC--hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH-c----cCc
Q psy12638 114 LPKLVSLL---EEGKHQKIILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL-A----LNS 183 (334)
Q Consensus 114 Ip~Lv~lL---~~~~~~~~al~~L~~LS~~--~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL-s----~~~ 183 (334)
|+.+...+ +..+.+-.|+.+|..||.. ++.+-- ..+|.+|.++. ++..+++-.++..+.-+ + ..+
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD----RVlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD----RVLPYFVHLLM-DSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh----hhHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCc
Confidence 45555555 3566777899999999874 444332 27899999996 46667766555433322 2 334
Q ss_pred chHHHHHhcCchHHHHHHHhcCChH-HHHHHHHHHhcCCCchhhhhhhHHHHHHH-hhcCCccchhH-----HhhcHH-H
Q psy12638 184 RNAELMLKNRQLELLMIQAFTQKNI-LLLKVIRNMSIHSNVKHYFVDYIGDIANC-VQKEKDENIKL-----ECLGTL-E 255 (334)
Q Consensus 184 ~n~~~i~~~~gl~~Lv~~l~~~~d~-~~~k~l~nLa~~~~~~~~f~~~i~~L~~~-l~~~~~~~~~v-----e~Lg~l-e 255 (334)
.++..+.+- -||.|-.++..+... +-+....|||.-....-.|......+-.. +.+..+.+... ..++.| +
T Consensus 499 ~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 499 SDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred ccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 455555553 555555555542221 22333444444333333343322222211 11111111111 112222 2
Q ss_pred H-HHHHHHhcCCcc--hHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHH
Q psy12638 256 V-INFIGTAASDPI--SAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQ 305 (334)
Q Consensus 256 a-v~~lg~la~~~~--~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~ 305 (334)
. -..+.++..+++ -+..+.+. |-+|.-.+. +.-.+|+++.++.+|..
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~--i~~LC~FFG-k~ksND~iLshLiTfLN 627 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLES--IIPLCVFFG-KEKSNDVILSHLITFLN 627 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHH--HHHHHHHhh-hcccccchHHHHHHHhc
Confidence 2 224555555544 33344443 444555554 34456788877777654
No 179
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=38.72 E-value=1.8e+02 Score=28.97 Aligned_cols=27 Identities=15% Similarity=0.003 Sum_probs=13.7
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhh
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNL 98 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NL 98 (334)
.++.|...+.+.++.++..|+..|.-+
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 444455555555555555555555433
No 180
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=36.46 E-value=2.6e+02 Score=26.62 Aligned_cols=99 Identities=15% Similarity=0.070 Sum_probs=73.1
Q ss_pred HHHHHHhcccchhhHHHhHh-CCcchHHHhhccCCChhHHHHHHHHHHh-hcCC----hhHHHHHHhcCChHHHHHhcc-
Q psy12638 50 GRQDSRKLSVYHVNKEQMAN-LNLIEKLPRILMIEDSNLQSSTLKLLFN-LSFD----TNLREKIIKIGFLPKLVSLLE- 122 (334)
Q Consensus 50 A~~~L~~LSi~~enk~~m~~-~g~I~~Lv~LL~~~~~~l~~~al~~L~N-LS~d----~~~r~~iv~~g~Ip~Lv~lL~- 122 (334)
+++|+... .++-|.++.+ .+.+..+.+-+..+..++....+..|.. .-.| ...|..+-....+.+|+.+.+
T Consensus 138 ~Lsfl~~~--~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 138 WLSFLSSG--DPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHccC--CHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 33444443 4556666554 6788899999999999999999988884 4333 367888888899999999875
Q ss_pred -CC----chHHHHHHHHHHccCChhhhhHhhcc
Q psy12638 123 -EG----KHQKIILQLLYHLSIEDRVKAMFAYT 150 (334)
Q Consensus 123 -~~----~~~~~al~~L~~LS~~~~~r~~i~~t 150 (334)
.+ ...+.+-.+|..++.++..=..|...
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~ 248 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPKHGVCFPDN 248 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCCcccccCCC
Confidence 33 45888999999999988766666544
No 181
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=36.41 E-value=43 Score=30.64 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=63.3
Q ss_pred HHHHHHHhcccchhhHHHhHhCC--cchHHH-hhccCC---ChhHHHHHHHHHHhhcCCh-hHH-HHHHhcCChHHHHHh
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLN--LIEKLP-RILMIE---DSNLQSSTLKLLFNLSFDT-NLR-EKIIKIGFLPKLVSL 120 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g--~I~~Lv-~LL~~~---~~~l~~~al~~L~NLS~d~-~~r-~~iv~~g~Ip~Lv~l 120 (334)
-+++++.|+=..+..+..+.+.. .|...+ .+..+. ++.++-.+..+++|+|... ..+ ..=.....+..+++.
T Consensus 129 l~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~ 208 (268)
T PF08324_consen 129 LALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEV 208 (268)
T ss_dssp HHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 56788888877777888877754 244444 444443 7889999999999999642 222 111112234555663
Q ss_pred c----cCCchHHHHHHHHHHccCChhhhhHhhcc
Q psy12638 121 L----EEGKHQKIILQLLYHLSIEDRVKAMFAYT 150 (334)
Q Consensus 121 L----~~~~~~~~al~~L~~LS~~~~~r~~i~~t 150 (334)
+ .+++....++..|.+|...+.......+.
T Consensus 209 ~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~ 242 (268)
T PF08324_consen 209 LSREESDEEALYRLLVALGTLLSSSDSAKQLAKS 242 (268)
T ss_dssp CHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCC
T ss_pred hccccCCHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence 3 35666777888888887655555555554
No 182
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=36.22 E-value=3.6e+02 Score=25.12 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=46.5
Q ss_pred CcchHHH-hhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCCh
Q psy12638 71 NLIEKLP-RILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIED 141 (334)
Q Consensus 71 g~I~~Lv-~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~ 141 (334)
++++.|+ .-+.+++..+++.|+++|+-.+.-+. ++... .++.+...+. ++..+..|+.++..+-...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~~-~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~ 95 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAKE-HLPLFLQALQKDDEEVKITALKALFDLLLTH 95 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 5566655 67889999999999999999886432 22211 2555666663 4456888888888886543
No 183
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=35.44 E-value=3.7e+02 Score=24.96 Aligned_cols=85 Identities=20% Similarity=0.223 Sum_probs=53.1
Q ss_pred hhccCCChhHHHHHHHHHHhhc----C-ChhHHHHHHh------c-CChHHHHHhc----cCCchHHHHHHHHHHccCCh
Q psy12638 78 RILMIEDSNLQSSTLKLLFNLS----F-DTNLREKIIK------I-GFLPKLVSLL----EEGKHQKIILQLLYHLSIED 141 (334)
Q Consensus 78 ~LL~~~~~~l~~~al~~L~NLS----~-d~~~r~~iv~------~-g~Ip~Lv~lL----~~~~~~~~al~~L~~LS~~~ 141 (334)
.+|.+.++.--..|+++|..+- . |++++..+.+ . |..|.+..++ .++...+.++.+|-.|....
T Consensus 14 AcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~ 93 (262)
T PF14225_consen 14 ACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLP 93 (262)
T ss_pred HhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCC
Confidence 4556666655555555555442 2 2345554442 2 7788888777 47888888999998887542
Q ss_pred --------hhhhHhhccCcHHHHHHHhcc
Q psy12638 142 --------RVKAMFAYTNCMSLLMNMLLV 162 (334)
Q Consensus 142 --------~~r~~i~~t~~i~~Lv~LL~~ 162 (334)
++|-.+.-...+|.+..-+.+
T Consensus 94 ~~~lig~~~~rll~~~la~LP~ll~~~d~ 122 (262)
T PF14225_consen 94 DDPLIGDSQSRLLFLLLALLPRLLHAFDD 122 (262)
T ss_pred CccccCCCCccHHHHHHHHHHHHHHHhcc
Confidence 245555555667777666654
No 184
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=34.80 E-value=78 Score=26.02 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=54.1
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhccCCc----hHHHHHHHHHHccC
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLLEEGK----HQKIILQLLYHLSI 139 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL~~~~----~~~~al~~L~~LS~ 139 (334)
.++..|-+-+.++++.++..|+.+|--+..+ .....++.+.+++..|++++.++. .+..++.++..-+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3555677788899999999999999999998 478899999999999999995331 45556665555543
No 185
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=34.25 E-value=36 Score=31.67 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=42.0
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCchHHHHHHHHH
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLY 135 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~~~~~al~~L~ 135 (334)
++..|+++|..+-+-++..++.+|+.|=.+.+.+.. ...+.|.++.++|+++-..+ |+.+|-
T Consensus 189 ~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~e-AL~VLd 250 (262)
T PF14225_consen 189 ILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWME-ALEVLD 250 (262)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccHHH-HHHHHH
Confidence 455677777777778888888888887776665555 55667777777776654433 555553
No 186
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=34.20 E-value=1.4e+02 Score=32.20 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=64.0
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccCChhhhhHhhc
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIEDRVKAMFAY 149 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~~~r~~i~~ 149 (334)
++..+.+=+.++|+.++..|++.|.-|=. ++.. ..+++++.+++.++. .|..|+-.+.++ +.-.+..+.+
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~-~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kl--y~ld~~l~~~ 164 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRV-KELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKL--YRLDKDLYHE 164 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcCh-HHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHH--HhcCHhhhhc
Confidence 44556666788999999999999886643 3333 345789999997654 454444333333 2233456666
Q ss_pred cCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc
Q psy12638 150 TNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR 184 (334)
Q Consensus 150 t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~ 184 (334)
.|.+..+..++. .+++.+..++...+..+ +++
T Consensus 165 ~g~~~~l~~l~~-D~dP~Vi~nAl~sl~~i--~~e 196 (757)
T COG5096 165 LGLIDILKELVA-DSDPIVIANALASLAEI--DPE 196 (757)
T ss_pred ccHHHHHHHHhh-CCCchHHHHHHHHHHHh--chh
Confidence 777788888885 35666655554444444 555
No 187
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=33.70 E-value=76 Score=25.45 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=33.6
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhc
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKI 111 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~ 111 (334)
+|+.|++=|-.+++++...|+.+|+..+.+++.-+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 5778888888888999999999999999988777766654
No 188
>KOG3665|consensus
Probab=32.03 E-value=6.4e+02 Score=27.02 Aligned_cols=174 Identities=13% Similarity=0.071 Sum_probs=95.1
Q ss_pred HHHhhcCC-hhHHHHHHhcCChHHHHHhcc---CCchHHHHHHHHHHccCChhhhhHhhccCcHH--HHHHHhccCCCCc
Q psy12638 94 LLFNLSFD-TNLREKIIKIGFLPKLVSLLE---EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMS--LLMNMLLVEQDDE 167 (334)
Q Consensus 94 ~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~---~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~--~Lv~LL~~~~~~~ 167 (334)
+|+|..-+ ++.+..+.+.|+...+.++++ ..+.+..+++++.+++...+.+..+..-..+. .+-.++....+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 78888876 699999999999999999996 55677889999999988776665554333332 2222443322213
Q ss_pred hHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhh--hhhhHHH-HHHHhhcCCcc
Q psy12638 168 TDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHY--FVDYIGD-IANCVQKEKDE 244 (334)
Q Consensus 168 ~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~--f~~~i~~-L~~~l~~~~~~ 244 (334)
..--+..++..+..+.+. ..+. +.. +..--.+..+...+...... +.....+ ..+++...+.
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~-~~r----------~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~- 638 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTEC-VFR----------NSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKS- 638 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccc-cch----------HHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCC-
Confidence 323344555555444333 1111 111 11112233344444433322 1222222 3333332221
Q ss_pred chhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhc
Q psy12638 245 NIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLK 287 (334)
Q Consensus 245 ~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~ 287 (334)
+..+ +-|+..+..+.. ++++.+.+.+.|+++.+.++-.
T Consensus 639 ~g~~-----lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 639 DGSQ-----LWALWTIKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred CchH-----HHHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 1111 124455566655 6777778888888887776654
No 189
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=31.74 E-value=70 Score=25.80 Aligned_cols=62 Identities=24% Similarity=0.216 Sum_probs=43.9
Q ss_pred cchHHHhhccCCC----hhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCchHHHHHHHH
Q psy12638 72 LIEKLPRILMIED----SNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLL 134 (334)
Q Consensus 72 ~I~~Lv~LL~~~~----~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~~~~~al~~L 134 (334)
+++.+.+.+.... .++...+++++.....- -.-..+.+.+.++.+.++|.+|..+..|+-.|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~-~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISW-IPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT-S-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh-CCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3444555554433 78899999999988773 33445556789999999999998887776543
No 190
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=31.57 E-value=2.1e+02 Score=26.48 Aligned_cols=172 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred hCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCchHHHHHHHHHHccC---------
Q psy12638 69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSI--------- 139 (334)
Q Consensus 69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~--------- 139 (334)
+.+.+.-|.++|+.+++... ...++|+ ...+++..+||-|...=+++..-..++.+|-+|+.
T Consensus 11 cl~~LkdL~r~lr~dd~~~~-~v~r~lg--------~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~ 81 (266)
T PF04821_consen 11 CLECLKDLKRFLRRDDEDQR-DVRRQLG--------EWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQ 81 (266)
T ss_pred HHHHHHHHHHHHHHhCcchH-HHHHHHH--------HhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCC
Q ss_pred ----------------ChhhhhHhhccCcHHHHHHHh----------ccCCCCchHHHHHHHHHHHccCcchHHHHHhcC
Q psy12638 140 ----------------EDRVKAMFAYTNCMSLLMNML----------LVEQDDETDNVLVALCINLALNSRNAELMLKNR 193 (334)
Q Consensus 140 ----------------~~~~r~~i~~t~~i~~Lv~LL----------~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~ 193 (334)
--..|..|...+.+..+++++ .+..+..+-+-.+.++-|+..-++....-...+
T Consensus 82 ~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~ 161 (266)
T PF04821_consen 82 PKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSD 161 (266)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccc
Q ss_pred chHHHHHHHhcC-ChHHHHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHh
Q psy12638 194 QLELLMIQAFTQ-KNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLEC 250 (334)
Q Consensus 194 gl~~Lv~~l~~~-~d~~~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~ 250 (334)
.-..+-+.++.. ...-+..++-.++.+....+ |.-.+-.++..+-.+-..+.++..
T Consensus 162 ~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~-f~~~lLEIi~ll~k~~~p~~L~~~ 218 (266)
T PF04821_consen 162 EDSSLHDQLIWALFESGVLDLLLTLASSPQESD-FNLLLLEIIYLLFKGQDPESLASA 218 (266)
T ss_pred hhHHHHHHHHHHHHHcCHHHHHHHHHhCccccc-hhhHHHHHHHHHHcCCCHHHHhhc
No 191
>KOG2137|consensus
Probab=30.78 E-value=3.1e+02 Score=29.20 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=29.2
Q ss_pred chHHHHHHhcc-ccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHh
Q psy12638 278 TVDLLINLLKE-MQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDL 329 (334)
Q Consensus 278 ~I~~Lv~LL~~-~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~L 329 (334)
+++.+.-+++. +..|.+++.-.+..+..+......++.++.+.-+| +++-|
T Consensus 465 v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlP-lli~l 516 (700)
T KOG2137|consen 465 VLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLP-LLIPL 516 (700)
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhh-hhhhh
Confidence 45666666654 35666787777777777765555433344444444 44433
No 192
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=30.18 E-value=1.4e+02 Score=23.45 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=46.1
Q ss_pred hCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc
Q psy12638 69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL 121 (334)
Q Consensus 69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL 121 (334)
..+.+..|++++..+.....+.++.+|..|+.++.....+.+.|+..-|-++=
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999877755554
No 193
>KOG1991|consensus
Probab=29.92 E-value=8.1e+02 Score=27.28 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=77.4
Q ss_pred CCcchHHHhhcc--------CCChhHHHHHHHHHHhhcC----ChhHHHHHHhcCChHHHHHhccCCc--hHHHHHHHHH
Q psy12638 70 LNLIEKLPRILM--------IEDSNLQSSTLKLLFNLSF----DTNLREKIIKIGFLPKLVSLLEEGK--HQKIILQLLY 135 (334)
Q Consensus 70 ~g~I~~Lv~LL~--------~~~~~l~~~al~~L~NLS~----d~~~r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~ 135 (334)
.|+++.++.++. .++....+-|++++.+|+. +...+.+| +.=+++.+.+.+++|- .|..|+-++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 456666777665 3566788889999999983 12233333 3446677777777663 5888999898
Q ss_pred Hcc-CChhhhhHhhccCcHHHHHHHhccCCCCchHHHHH-HHHHHHccCcchHHHHHhcCchHHHHHHHh
Q psy12638 136 HLS-IEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLV-ALCINLALNSRNAELMLKNRQLELLMIQAF 203 (334)
Q Consensus 136 ~LS-~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~-~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~ 203 (334)
..| .+-.....+. .+....+..|.++.+-.++-+++ |+=.-++.++.+.+.|.. -+|+.++-++
T Consensus 488 ~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~--hvp~~mq~lL 553 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA--HVPPIMQELL 553 (1010)
T ss_pred HHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh--hhhHHHHHHH
Confidence 888 4433444442 26667777777555556655553 332344555555454543 4555555443
No 194
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=29.88 E-value=3.7e+02 Score=26.40 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=61.4
Q ss_pred CChHHHHHhccCCchHHHHHHHHHHccCC-hhh---------hhHhh---ccCcHHHHHHHhccCCCCchHHHHHHHHHH
Q psy12638 112 GFLPKLVSLLEEGKHQKIILQLLYHLSIE-DRV---------KAMFA---YTNCMSLLMNMLLVEQDDETDNVLVALCIN 178 (334)
Q Consensus 112 g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~-~~~---------r~~i~---~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~n 178 (334)
..+..|+.+|++++....++..+.-|-.| ++. |.... .+..+|.|++-..+..++ .+...+..+.+
T Consensus 271 ~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ 349 (415)
T PF12460_consen 271 ELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE-IKSNYLTALSH 349 (415)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHH
Confidence 34667888888888777777777777666 433 11111 144788888888754433 22323333444
Q ss_pred H-ccCcchHHHHHhcCchHHHHHHHhcCChHH----HHHHHHHHhcCCCchhhhhhhHHHHHH
Q psy12638 179 L-ALNSRNAELMLKNRQLELLMIQAFTQKNIL----LLKVIRNMSIHSNVKHYFVDYIGDIAN 236 (334)
Q Consensus 179 L-s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~~~~~~~f~~~i~~L~~ 236 (334)
+ ..-| ....+-+-+-+-||+-.+++.+|+. .+.++..+-.++ .+.+.+++..++.
T Consensus 350 ll~~vP-~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~~~i~~hl~sLI~ 409 (415)
T PF12460_consen 350 LLKNVP-KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA--PELISEHLSSLIP 409 (415)
T ss_pred HHhhCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHH
Confidence 4 3334 2223333333444444444545542 244455555444 2223344444443
No 195
>PLN03205 ATR interacting protein; Provisional
Probab=29.53 E-value=1.2e+02 Score=30.15 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=74.1
Q ss_pred hHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHH---hcCChHHHHHhc------cCCc-hHHHHHHHHH--HccCC
Q psy12638 74 EKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKII---KIGFLPKLVSLL------EEGK-HQKIILQLLY--HLSIE 140 (334)
Q Consensus 74 ~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv---~~g~Ip~Lv~lL------~~~~-~~~~al~~L~--~LS~~ 140 (334)
++|+.|-.-++..+.-.+++.|..+-.+- .++..+. ..+.+ .|.+++ ++++ .+--|+.+.- -++.+
T Consensus 326 EaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 326 EPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 45666667778888888888777665542 2222111 12222 222222 1222 2222444333 33444
Q ss_pred -hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHH
Q psy12638 141 -DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELML 190 (334)
Q Consensus 141 -~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~ 190 (334)
..-|+.|+.+..++.+..+|....+..++++++-+++-|..|+.--..++
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFc 455 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFD 455 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHh
Confidence 46799999999999999999988888999999988887777777777766
No 196
>KOG1058|consensus
Probab=29.29 E-value=5.9e+02 Score=27.64 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=21.1
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHH
Q psy12638 153 MSLLMNMLLVEQDDETDNVLVALCINLALNSRNAEL 188 (334)
Q Consensus 153 i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~ 188 (334)
|..+..+|.+ +++.+.-|++..+++||.++....+
T Consensus 245 i~~i~~lL~s-tssaV~fEaa~tlv~lS~~p~alk~ 279 (948)
T KOG1058|consen 245 IRCIYNLLSS-TSSAVIFEAAGTLVTLSNDPTALKA 279 (948)
T ss_pred HHHHHHHHhc-CCchhhhhhcceEEEccCCHHHHHH
Confidence 4556667754 3556656666666677777665443
No 197
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=28.70 E-value=3.3e+02 Score=26.02 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=41.4
Q ss_pred HHHHHhhcCChhHHHHHHhcCChHHHHHhccCCchHHHHHHHHHHccCChhhhhHhhccC--cHHHHHHHhccC
Q psy12638 92 LKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTN--CMSLLMNMLLVE 163 (334)
Q Consensus 92 l~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~~~r~~i~~t~--~i~~Lv~LL~~~ 163 (334)
+++...++.... |.+++.. |-.|++.|.++..+...-..|.+.+ .+..|++++..+
T Consensus 220 iR~A~af~~~~~-R~~~l~i---------------RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~ 277 (329)
T PF06012_consen 220 IRVAKAFSSSSY-RRQLLQI---------------RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPE 277 (329)
T ss_pred HHHHHHcCCHHH-HHHHHHH---------------HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCC
Confidence 344555554333 7777644 4569999999999988888888877 899999999753
No 198
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.63 E-value=47 Score=27.84 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=28.3
Q ss_pred HHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC
Q psy12638 64 KEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF 100 (334)
Q Consensus 64 k~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~ 100 (334)
|.--.+..+=+.+..+|.+++.++|..|+.||+.--.
T Consensus 10 k~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 10 KSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3333444555677899999999999999999998653
No 199
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=25.76 E-value=2.5e+02 Score=30.15 Aligned_cols=100 Identities=20% Similarity=0.109 Sum_probs=63.7
Q ss_pred chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHHhc--
Q psy12638 46 SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK--IGFLPKLVSLL-- 121 (334)
Q Consensus 46 ~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~--~g~Ip~Lv~lL-- 121 (334)
+-++-+.||-+||....+- | ..-.+.+++||.+.+-.+++.-+.++.|+..|..-..+|++ -.-+..|+.++
T Consensus 278 Gpk~islFl~kls~l~p~i--~--lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~E 353 (1128)
T COG5098 278 GPKDISLFLNKLSELSPGI--M--LRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVE 353 (1128)
T ss_pred ChHHHHHHHHHHhhcCchH--H--HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHH
Confidence 3346678999998753221 1 11356789999999999999999999999987655556765 12334455554
Q ss_pred --c--CCchHHHHHHHHHHcc----CChhhhhHhhc
Q psy12638 122 --E--EGKHQKIILQLLYHLS----IEDRVKAMFAY 149 (334)
Q Consensus 122 --~--~~~~~~~al~~L~~LS----~~~~~r~~i~~ 149 (334)
. .|=.|--|+.++-.+. .....|..|++
T Consensus 354 Rl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~ 389 (1128)
T COG5098 354 RLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIR 389 (1128)
T ss_pred HhhccchHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 2 3445655666655543 23455665543
No 200
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=25.26 E-value=2.9e+02 Score=25.04 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHH
Q psy12638 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVF 303 (334)
Q Consensus 256 av~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l 303 (334)
-...||+++.++...+++.+.|+...+.++...+ +.|+++..++..+
T Consensus 143 Yf~~IG~lS~~~~Gl~lLe~~~if~~l~~i~~~~-~~~~l~klil~~L 189 (226)
T PF14666_consen 143 YFLFIGVLSSTPNGLKLLERWNIFTMLYHIFSLS-SRDDLLKLILSSL 189 (226)
T ss_pred HHHHHHHHhCChhHHHHHHHCCHHHHHHHHHccC-chHHHHHHHHhhC
Confidence 4567899999999999999999999999999864 4466666555444
No 201
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=24.76 E-value=4.3e+02 Score=22.35 Aligned_cols=100 Identities=18% Similarity=0.156 Sum_probs=49.6
Q ss_pred chHHHhhccCC-ChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhccCCchHHHHHHHHHHcc-CChhhhhHhhc
Q psy12638 73 IEKLPRILMIE-DSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLS-IEDRVKAMFAY 149 (334)
Q Consensus 73 I~~Lv~LL~~~-~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS-~~~~~r~~i~~ 149 (334)
.+.|.++++.+ +..++..|+++|+.|-- ||--.+.+....- .-..--.+.......+ ...+.+ ..++.-..+
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~~~~~~~~~~~~~l-~~~~~~~~~ee~y~~v-- 86 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKSSENSNDESTDISL-PMMGISPSSEEYYPTV-- 86 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccccccccccchhhHH-hhccCCCchHHHHHHH--
Confidence 45567777766 46889999999999965 5532222221100 0000000111111111 112222 234444444
Q ss_pred cCcHHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638 150 TNCMSLLMNMLLVEQDDETDNVLVALCINL 179 (334)
Q Consensus 150 t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL 179 (334)
++..|+++|...+-..-+..++..+.+.
T Consensus 87 --vi~~L~~iL~D~sLs~~h~~vv~ai~~I 114 (160)
T PF11865_consen 87 --VINALMRILRDPSLSSHHTAVVQAIMYI 114 (160)
T ss_pred --HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888999887655445444444444444
No 202
>KOG1992|consensus
Probab=24.39 E-value=5.5e+02 Score=28.10 Aligned_cols=146 Identities=18% Similarity=0.283 Sum_probs=68.2
Q ss_pred cHHHHHHHhccCCCCchHHHHHHHH-HHHccCcc-hHHHHHhcCchH----HHHHHHhc-------CChHHHHHH-HHHH
Q psy12638 152 CMSLLMNMLLVEQDDETDNVLVALC-INLALNSR-NAELMLKNRQLE----LLMIQAFT-------QKNILLLKV-IRNM 217 (334)
Q Consensus 152 ~i~~Lv~LL~~~~~~~~~~~~~~ll-~nLs~~~~-n~~~i~~~~gl~----~Lv~~l~~-------~~d~~~~k~-l~nL 217 (334)
++|.+++.|.. +...++.=++..+ -+|+.++. ++..+.. +-+. +++..+++ ..++.++|+ .|-+
T Consensus 499 ~~p~li~~L~a-~s~vvhsYAA~aiEkil~vre~~~~~if~~-~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii 576 (960)
T KOG1992|consen 499 LLPRLIRFLEA-ESRVVHSYAAIAIEKLLTVRENSNAKIFGA-EDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRII 576 (960)
T ss_pred HHHHHHHhccC-cchHHHHHHHHHHHhccccccCccccccch-hhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHH
Confidence 67788888864 3445555333222 25555544 2333332 2333 33333331 234556775 5666
Q ss_pred hcCCCchhh-hhhhHHHHHHHhh---cCCcc----chhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhcc
Q psy12638 218 SIHSNVKHY-FVDYIGDIANCVQ---KEKDE----NIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKE 288 (334)
Q Consensus 218 a~~~~~~~~-f~~~i~~L~~~l~---~~~~~----~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~ 288 (334)
+..+..... +...+..|.+++. +.... ..+.|.+|.+ +-..+. ++..-.. -+..+.|.+..+|+.
T Consensus 577 ~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~l-----i~~t~~~~~~~vs~-~e~aL~p~fq~Il~e 650 (960)
T KOG1992|consen 577 SILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLL-----IRKTCKANPSAVSS-LEEALFPVFQTILSE 650 (960)
T ss_pred HhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH-----HHHHhccCchHHHH-HHHHHHHHHHHHHHH
Confidence 666655533 4445555555543 22211 2444544333 222222 3332222 333477888888873
Q ss_pred ccCCchH---HHHHHHHHHHHH
Q psy12638 289 MQEDDEI---VLQILYVFYQIC 307 (334)
Q Consensus 289 ~~~dde~---vlqi~~~l~~l~ 307 (334)
. -.|+ ++|++..+--.+
T Consensus 651 D--I~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 651 D--IQEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred H--HHHHHHHHHHHHHHHHHhc
Confidence 2 2233 445444444443
No 203
>KOG1832|consensus
Probab=24.00 E-value=1.1e+02 Score=33.51 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=49.8
Q ss_pred hHHHhHhCCcchHHHhhccCCCh-----hHHHHHHHHHHhhcCChhHHHHHHhcCChH--HHHHhccCC
Q psy12638 63 NKEQMANLNLIEKLPRILMIEDS-----NLQSSTLKLLFNLSFDTNLREKIIKIGFLP--KLVSLLEEG 124 (334)
Q Consensus 63 nk~~m~~~g~I~~Lv~LL~~~~~-----~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip--~Lv~lL~~~ 124 (334)
-|......+.|..|++||+.+++ .++..|.+.|.-||-|+++|..+.+..+|. .+-.+...|
T Consensus 731 mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~eP 799 (1516)
T KOG1832|consen 731 MWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAEP 799 (1516)
T ss_pred HHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhCc
Confidence 45556678899999999988766 689999999999999999999999988876 344444444
No 204
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=22.72 E-value=6.5e+02 Score=26.86 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=70.4
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCC--hhhhhHhh
Q psy12638 75 KLPRILMIEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIE--DRVKAMFA 148 (334)
Q Consensus 75 ~Lv~LL~~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~--~~~r~~i~ 148 (334)
.+.+.+.+++..+-...+..+.++..=. ..+. .+. -.++-..-.+ -.........+|-.+|.. +..+..+.
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~-~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKD-ELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--ccc-CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 4556667777788888888888777522 1111 111 1111111111 123466678889999876 35577778
Q ss_pred ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHH
Q psy12638 149 YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQ 201 (334)
Q Consensus 149 ~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~ 201 (334)
+.++...++.++-+ ++.++.+.+..++...+ +...+. +++..|++.
T Consensus 522 d~~~~~~i~s~lfs-p~~~l~qaA~~llk~~~-d~~~R~-----e~i~~ll~~ 567 (727)
T PF12726_consen 522 DPDAAQAIWSLLFS-PDDDLYQAAQDLLKQAF-DVDGRL-----EAIQALLQS 567 (727)
T ss_pred CcchhhHHHhheeC-CChHHHHHHHHHHHHHh-cCCcHH-----HHHHHHHHH
Confidence 88999999999985 67778776666666654 333333 344445443
No 205
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=22.32 E-value=2.1e+02 Score=27.31 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=46.5
Q ss_pred hhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchh-hHH-HhhcCCcHHHHH-Hhhhc
Q psy12638 274 CKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC-QNY-LIKETDAPAYMI-DLLND 332 (334)
Q Consensus 274 ~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~-~~~-i~~~~~i~~~Li-~LL~d 332 (334)
.+.|++..+++.+.....|+-.-...++|+.++++-.+. .++ .+.+.|+..+|+ +++++
T Consensus 92 ~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~ 153 (303)
T PF12463_consen 92 EKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSD 153 (303)
T ss_pred ccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcC
Confidence 455888889998887777778888999999999988886 344 677889998888 45544
No 206
>KOG1059|consensus
Probab=22.31 E-value=1e+03 Score=25.80 Aligned_cols=210 Identities=16% Similarity=0.235 Sum_probs=116.6
Q ss_pred hHHHhhccCCChhHHHHHHHHHHhhcCC-h-hHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccC-ChhhhhHhh
Q psy12638 74 EKLPRILMIEDSNLQSSTLKLLFNLSFD-T-NLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSI-EDRVKAMFA 148 (334)
Q Consensus 74 ~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~-~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~-~~~~r~~i~ 148 (334)
+-++.||.+..+=++..|+.+||.+--- | ..| .++|+|++=|.+ |..+..|+.+.+.|+. ++.+--.+
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr------~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L- 219 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR------PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL- 219 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh------hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-
Confidence 3466688998889999999999988752 3 333 468999999964 5678999999999987 45444333
Q ss_pred ccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHHHHHHHhcCChH-HHHHHHHH-----Hhc-C
Q psy12638 149 YTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLELLMIQAFTQKNI-LLLKVIRN-----MSI-H 220 (334)
Q Consensus 149 ~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~Lv~~l~~~~d~-~~~k~l~n-----La~-~ 220 (334)
-|-+.++|.+.++.=+---.+.+.-+|+. .|+-... -++|+.++.-++..- ++..|+.. ++. +
T Consensus 220 ----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 220 ----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred ----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 35677888765554432234455566653 3444332 344555543332211 23333332 111 1
Q ss_pred CCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHH
Q psy12638 221 SNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQI 299 (334)
Q Consensus 221 ~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi 299 (334)
+......-=++.+|-.++...+ .-.-.| +..+++.++. +|... ..+ -..+++.|. -.|.-+-+.+
T Consensus 291 ~d~~asiqLCvqKLr~fiedsD---qNLKYl----gLlam~KI~ktHp~~V---qa~--kdlIlrcL~--DkD~SIRlrA 356 (877)
T KOG1059|consen 291 SDHSASIQLCVQKLRIFIEDSD---QNLKYL----GLLAMSKILKTHPKAV---QAH--KDLILRCLD--DKDESIRLRA 356 (877)
T ss_pred CCcHHHHHHHHHHHhhhhhcCC---ccHHHH----HHHHHHHHhhhCHHHH---HHh--HHHHHHHhc--cCCchhHHHH
Confidence 1111112245666666553332 222333 3346666666 33311 111 133444554 2344677777
Q ss_pred HHHHHHHHcCchhh
Q psy12638 300 LYVFYQICRHASCQ 313 (334)
Q Consensus 300 ~~~l~~l~~~~~~~ 313 (334)
+..+|.|..-++-.
T Consensus 357 LdLl~gmVskkNl~ 370 (877)
T KOG1059|consen 357 LDLLYGMVSKKNLM 370 (877)
T ss_pred HHHHHHHhhhhhHH
Confidence 88888886544433
No 207
>KOG0211|consensus
Probab=22.23 E-value=4.7e+02 Score=28.36 Aligned_cols=221 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred chHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC---------------------CchHHHH
Q psy12638 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE---------------------GKHQKII 130 (334)
Q Consensus 73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~---------------------~~~~~~a 130 (334)
|..+.+-+...+-..+.++.+-+.|++.- .+.|. +.-+||.+-+.+.+ |...+.-
T Consensus 84 ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~l 160 (759)
T KOG0211|consen 84 IAVLIDELSNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHML 160 (759)
T ss_pred HHHHhhccCchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHHh
Q ss_pred HHHHHHccCChhh--hhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHh-cCCh
Q psy12638 131 LQLLYHLSIEDRV--KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAF-TQKN 207 (334)
Q Consensus 131 l~~L~~LS~~~~~--r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~-~~~d 207 (334)
+..|.+++.++++ |.. +++.+.......+.+........++.+++..+.....+...|.+......+. ..-.
T Consensus 161 l~~le~l~~~eet~vr~k-----~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk 235 (759)
T KOG0211|consen 161 LPPLELLATVEETGVREK-----AVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK 235 (759)
T ss_pred hHHHHhhhHHHHHHHHHH-----HHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH
Q ss_pred HHHHHHHHHHhcCCCchhh--hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHH
Q psy12638 208 ILLLKVIRNMSIHSNVKHY--FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINL 285 (334)
Q Consensus 208 ~~~~k~l~nLa~~~~~~~~--f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~L 285 (334)
..+....+.++.+.....+ ...-.+.+...+.+....+...+..-.+ .+++ +--+++-.++.++++
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L----------~~Dd--qdsVr~~a~~~~~~l 303 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQL----------LRDD--QDSVREAAVESLVSL 303 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhh----------hhcc--hhhHHHHHHHHHHHH
Q ss_pred hccccCCchHHHHHHHHHHHHHcCchhh
Q psy12638 286 LKEMQEDDEIVLQILYVFYQICRHASCQ 313 (334)
Q Consensus 286 L~~~~~dde~vlqi~~~l~~l~~~~~~~ 313 (334)
+.-...|++..-+....+......+..+
T Consensus 304 ~~l~~~~~d~~~~~~~~l~~~~~d~~~~ 331 (759)
T KOG0211|consen 304 LDLLDDDDDVVKSLTESLVQAVEDGSWR 331 (759)
T ss_pred HHhcCCchhhhhhhhHHHHHHhcChhHH
No 208
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=22.14 E-value=9.5e+02 Score=25.40 Aligned_cols=92 Identities=21% Similarity=0.103 Sum_probs=60.9
Q ss_pred cchHHHhhccCCCh-hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccCChhhhhHhh
Q psy12638 72 LIEKLPRILMIEDS-NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIEDRVKAMFA 148 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~-~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~~~r~~i~ 148 (334)
+.+.+++++.+.++ ..-......+.+|+..-+-|-+-.-..+||.|.+-|+..+ ....|+.+...|+..-+.+-.+-
T Consensus 598 lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y 677 (858)
T COG5215 598 LMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY 677 (858)
T ss_pred HHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34445566666533 3455667778888876566666666788898888885333 35668888888877654444444
Q ss_pred ccCcHHHHHHHhccC
Q psy12638 149 YTNCMSLLMNMLLVE 163 (334)
Q Consensus 149 ~t~~i~~Lv~LL~~~ 163 (334)
.+.-...|++.|.+.
T Consensus 678 ~d~~ms~LvQ~lss~ 692 (858)
T COG5215 678 ADVLMSSLVQCLSSE 692 (858)
T ss_pred HHHHHHHHHHHhcCh
Confidence 455677889998753
No 209
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=20.62 E-value=1.8e+02 Score=30.22 Aligned_cols=71 Identities=25% Similarity=0.205 Sum_probs=37.1
Q ss_pred cchhHHHHHHHhcc-cchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638 45 KSKREGRQDSRKLS-VYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 45 ~~~~~A~~~L~~LS-i~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
+.|+-|+.|+-+-- .|++-.+. +|..++.|...++..++..|++-|-.++.| ++.-.+++ -.|++||.
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~ 106 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHh
Confidence 44555666654433 24443333 456677777777777777777777777776 35545443 34667776
Q ss_pred CCc
Q psy12638 123 EGK 125 (334)
Q Consensus 123 ~~~ 125 (334)
+++
T Consensus 107 tdd 109 (556)
T PF05918_consen 107 TDD 109 (556)
T ss_dssp ---
T ss_pred ccc
Confidence 544
No 210
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=20.53 E-value=1.5e+02 Score=25.05 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=53.6
Q ss_pred HHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHH-hccC----CchHHHHHHHHHHc
Q psy12638 65 EQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK--IGFLPKLVS-LLEE----GKHQKIILQLLYHL 137 (334)
Q Consensus 65 ~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~--~g~Ip~Lv~-lL~~----~~~~~~al~~L~~L 137 (334)
..+.+..+.+.|.+.+.+++..+...+++++.+|-. ..|..+.. .=.++.+.. ++.+ ..+|..++-++..+
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~--~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLS--RFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 345667788889999888889999999999999995 34444442 223445554 5531 24678888888888
Q ss_pred cCChh
Q psy12638 138 SIEDR 142 (334)
Q Consensus 138 S~~~~ 142 (334)
+.++.
T Consensus 145 ~~~p~ 149 (168)
T PF12783_consen 145 CKDPQ 149 (168)
T ss_pred HhChh
Confidence 87763
No 211
>KOG1242|consensus
Probab=20.38 E-value=9.9e+02 Score=24.93 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcc-ccCCchHHHHHHHHHHHHHcCch
Q psy12638 255 EVINFIGTAASDPISAEHFCKNSTVDLLINLLKE-MQEDDEIVLQILYVFYQICRHAS 311 (334)
Q Consensus 255 eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~-~~~dde~vlqi~~~l~~l~~~~~ 311 (334)
.++..+|.++....-+--.+-..+||.+.+.|.. +.+..+.=.+++.-|+....+++
T Consensus 273 aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d 330 (569)
T KOG1242|consen 273 ASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD 330 (569)
T ss_pred HHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH
Confidence 4566778777633323344555789999998863 44444444445666666656655
No 212
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=20.33 E-value=3.7e+02 Score=25.65 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHhcC--ChHHHHHhccCC-----chHHHHHHHHHHccCCh
Q psy12638 86 NLQSSTLKLLFNLSFDTNLREKIIKIG--FLPKLVSLLEEG-----KHQKIILQLLYHLSIED 141 (334)
Q Consensus 86 ~l~~~al~~L~NLS~d~~~r~~iv~~g--~Ip~Lv~lL~~~-----~~~~~al~~L~~LS~~~ 141 (334)
.++..|+.+|.....++..-..+...+ ++.-|+++++.+ ..+..|+.+|--++.+.
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 456666666666677789999999888 999999999632 35788888888888754
Done!