Query psy12638
Match_columns 334
No_of_seqs 148 out of 467
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 15:44:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xm9_A Plakophilin 1; armadill 100.0 7.5E-27 2.6E-31 230.9 23.3 288 44-333 16-431 (457)
2 3nmw_A APC variant protein; AR 100.0 2.2E-27 7.6E-32 227.8 18.8 260 45-313 47-339 (354)
3 3l6x_A Catenin delta-1; cateni 100.0 1.3E-26 4.5E-31 234.8 25.3 290 41-333 59-457 (584)
4 3nmz_A APC variant protein; pr 99.9 1.6E-26 5.4E-31 228.7 18.3 254 49-311 167-453 (458)
5 3nmz_A APC variant protein; pr 99.9 4.3E-26 1.5E-30 225.6 17.9 304 21-334 66-434 (458)
6 1jdh_A Beta-catenin; beta-cate 99.9 2.9E-24 9.9E-29 212.9 24.0 281 45-333 75-367 (529)
7 3nmw_A APC variant protein; AR 99.9 7.9E-25 2.7E-29 210.1 17.9 245 80-334 41-318 (354)
8 3now_A UNC-45 protein, SD10334 99.9 8E-24 2.7E-28 221.1 21.2 278 46-333 437-762 (810)
9 2z6h_A Catenin beta-1, beta-ca 99.9 3.4E-23 1.2E-27 212.4 23.3 281 45-333 72-364 (644)
10 1xm9_A Plakophilin 1; armadill 99.9 3.5E-23 1.2E-27 204.6 22.5 257 72-333 3-383 (457)
11 3now_A UNC-45 protein, SD10334 99.9 1.6E-23 5.4E-28 218.9 20.8 281 44-334 393-721 (810)
12 3l6x_A Catenin delta-1; cateni 99.9 3.7E-23 1.3E-27 209.6 21.3 264 65-333 42-407 (584)
13 3ul1_B Importin subunit alpha- 99.9 2.2E-22 7.6E-27 201.3 22.7 279 45-334 116-414 (510)
14 3tpo_A Importin subunit alpha- 99.9 5.2E-22 1.8E-26 199.3 25.0 279 45-334 135-433 (529)
15 4b8j_A Importin subunit alpha- 99.9 7.3E-22 2.5E-26 197.0 23.7 286 45-334 89-427 (528)
16 2z6g_A B-catenin; FULL-length, 99.9 5E-22 1.7E-26 208.5 23.5 281 45-333 208-500 (780)
17 3ul1_B Importin subunit alpha- 99.9 3.7E-22 1.3E-26 199.7 20.6 281 45-334 72-371 (510)
18 1jdh_A Beta-catenin; beta-cate 99.9 7.2E-22 2.5E-26 195.6 18.5 275 45-332 32-319 (529)
19 3tpo_A Importin subunit alpha- 99.9 2.6E-21 8.7E-26 194.2 22.3 279 47-334 93-390 (529)
20 2z6h_A Catenin beta-1, beta-ca 99.9 3.3E-21 1.1E-25 197.6 22.9 283 45-334 113-470 (644)
21 4b8j_A Importin subunit alpha- 99.9 1E-20 3.4E-25 188.7 24.7 287 45-334 133-480 (528)
22 4hxt_A De novo protein OR329; 99.9 2.6E-20 8.9E-25 166.4 21.6 233 70-312 1-245 (252)
23 4db8_A Armadillo-repeat protei 99.9 1.3E-20 4.6E-25 169.5 18.5 220 44-309 26-252 (252)
24 1wa5_B Importin alpha subunit; 99.9 1.2E-19 4.1E-24 181.3 25.4 285 45-334 102-441 (530)
25 3tt9_A Plakophilin-2; cell adh 99.8 6.3E-21 2.2E-25 172.6 13.4 174 46-220 26-230 (233)
26 2jdq_A Importin alpha-1 subuni 99.8 3.3E-19 1.1E-23 172.7 26.1 278 45-334 80-374 (450)
27 2z6g_A B-catenin; FULL-length, 99.8 1.4E-19 4.7E-24 189.9 21.5 284 44-334 248-606 (780)
28 3tt9_A Plakophilin-2; cell adh 99.8 5.3E-20 1.8E-24 166.5 14.5 207 72-309 9-230 (233)
29 1wa5_B Importin alpha subunit; 99.8 1.9E-18 6.6E-23 172.6 25.3 285 46-334 147-494 (530)
30 4db8_A Armadillo-repeat protei 99.8 6.3E-19 2.2E-23 158.5 19.6 217 71-334 12-235 (252)
31 2jdq_A Importin alpha-1 subuni 99.8 1.9E-18 6.5E-23 167.3 22.8 279 45-334 35-331 (450)
32 4hxt_A De novo protein OR329; 99.8 1.9E-18 6.6E-23 154.2 19.0 214 45-266 17-242 (252)
33 4db6_A Armadillo repeat protei 99.8 5.3E-18 1.8E-22 148.4 18.9 195 69-309 10-210 (210)
34 3opb_A SWI5-dependent HO expre 99.8 5.7E-18 1.9E-22 174.9 20.0 264 63-333 449-759 (778)
35 4db6_A Armadillo repeat protei 99.8 6.7E-18 2.3E-22 147.8 17.0 175 45-220 27-210 (210)
36 3opb_A SWI5-dependent HO expre 99.8 1.1E-17 3.6E-22 172.8 19.3 277 47-332 351-708 (778)
37 1xqr_A HSPBP1 protein; armadil 99.7 1.2E-15 4E-20 142.8 14.9 175 45-220 55-239 (296)
38 1xqr_A HSPBP1 protein; armadil 99.6 1.1E-14 3.8E-19 136.2 19.9 181 86-311 55-241 (296)
39 3grl_A General vesicular trans 99.4 1.7E-12 6E-17 131.2 16.5 269 42-318 34-353 (651)
40 3grl_A General vesicular trans 99.2 4.9E-10 1.7E-14 113.4 16.2 243 68-317 119-404 (651)
41 4gmo_A Putative uncharacterize 98.4 1.2E-06 4.2E-11 90.4 13.0 95 68-162 31-130 (684)
42 4gmo_A Putative uncharacterize 98.4 4.2E-07 1.4E-11 93.8 9.2 155 39-193 43-227 (684)
43 1oyz_A Hypothetical protein YI 98.2 5.6E-05 1.9E-09 68.2 17.6 63 68-140 20-84 (280)
44 3ltm_A Alpha-REP4; protein eng 98.0 0.00022 7.5E-09 61.5 15.0 188 69-311 17-206 (211)
45 1oyz_A Hypothetical protein YI 97.9 0.00037 1.3E-08 62.8 16.8 111 46-176 39-152 (280)
46 1w63_A Adapter-related protein 97.9 0.00037 1.3E-08 70.8 17.9 102 48-162 125-230 (618)
47 2vgl_B AP-2 complex subunit be 97.8 0.00011 3.7E-09 74.2 12.6 67 72-141 122-191 (591)
48 1ho8_A Vacuolar ATP synthase s 97.8 0.00026 9E-09 69.4 14.3 241 76-334 172-460 (480)
49 4fdd_A Transportin-1; heat rep 97.8 7.7E-05 2.6E-09 78.1 11.2 254 70-334 127-455 (852)
50 3ltj_A Alpharep-4; protein eng 97.8 0.00052 1.8E-08 58.6 14.6 182 70-306 13-196 (201)
51 4fdd_A Transportin-1; heat rep 97.6 0.0005 1.7E-08 72.0 13.2 273 47-334 338-642 (852)
52 1ho8_A Vacuolar ATP synthase s 97.6 0.0012 4.1E-08 64.7 14.6 237 49-309 187-477 (480)
53 3ltm_A Alpha-REP4; protein eng 97.5 0.0029 9.9E-08 54.3 14.5 150 45-240 34-185 (211)
54 2vgl_B AP-2 complex subunit be 97.4 0.0018 6.2E-08 65.2 13.7 215 72-308 87-311 (591)
55 1w63_A Adapter-related protein 97.4 0.0052 1.8E-07 62.3 17.1 149 72-234 108-279 (618)
56 2vgl_A Adaptor protein complex 97.4 0.0019 6.5E-08 65.7 13.6 180 46-239 164-378 (621)
57 3ltj_A Alpharep-4; protein eng 97.4 0.005 1.7E-07 52.3 14.4 119 46-205 30-150 (201)
58 1b3u_A Protein (protein phosph 97.3 0.012 4.2E-07 57.7 17.9 221 71-310 87-312 (588)
59 1b3u_A Protein (protein phosph 96.8 0.016 5.5E-07 56.9 14.3 96 72-170 243-342 (588)
60 2bpt_A Importin beta-1 subunit 96.6 0.046 1.6E-06 56.3 16.5 251 45-309 384-669 (861)
61 3dad_A FH1/FH2 domain-containi 96.5 0.061 2.1E-06 50.3 14.8 194 76-299 123-327 (339)
62 2vgl_A Adaptor protein complex 96.5 0.14 4.8E-06 51.9 18.9 213 72-310 112-360 (621)
63 1qgr_A Protein (importin beta 96.5 0.037 1.3E-06 57.1 14.7 254 45-309 381-680 (876)
64 3dad_A FH1/FH2 domain-containi 96.3 0.043 1.5E-06 51.3 12.5 158 45-203 133-314 (339)
65 1qgr_A Protein (importin beta 96.2 0.046 1.6E-06 56.5 13.6 253 45-309 343-638 (876)
66 1ibr_B P95, importin beta-1 su 96.0 0.036 1.2E-06 52.5 10.8 132 46-180 146-287 (462)
67 1ibr_B P95, importin beta-1 su 96.0 0.031 1.1E-06 53.0 10.2 252 70-334 127-421 (462)
68 1te4_A Conserved protein MTH18 95.6 0.018 6.3E-07 45.7 5.8 79 73-172 44-124 (131)
69 1te4_A Conserved protein MTH18 95.3 0.0074 2.5E-07 48.1 2.4 102 70-203 11-114 (131)
70 1u6g_C TIP120 protein, CAND1; 95.0 0.066 2.3E-06 58.1 9.7 220 71-309 48-285 (1230)
71 2bpt_A Importin beta-1 subunit 94.7 0.15 5E-06 52.5 10.8 226 71-307 597-856 (861)
72 3tjz_B Coatomer subunit gamma; 94.7 0.35 1.2E-05 45.7 12.3 206 73-310 106-318 (355)
73 1u6g_C TIP120 protein, CAND1; 93.0 4.2 0.00014 43.9 18.7 171 45-218 348-547 (1230)
74 2fv2_A RCD1 required for cell 93.0 1.1 3.8E-05 40.2 11.6 143 49-191 75-234 (268)
75 2fv2_A RCD1 required for cell 92.2 0.4 1.4E-05 43.1 7.8 144 43-191 14-184 (268)
76 2qk2_A LP04448P; mini spindles 91.4 0.48 1.6E-05 41.2 7.4 121 49-178 76-202 (242)
77 2qk2_A LP04448P; mini spindles 90.0 0.28 9.7E-06 42.7 4.6 125 45-179 30-160 (242)
78 3b2a_A TON_1937, putative unch 89.9 5.6 0.00019 35.4 12.6 179 17-211 17-206 (265)
79 3tjz_B Coatomer subunit gamma; 89.8 0.89 3E-05 42.8 8.0 170 49-242 123-300 (355)
80 3b2a_A TON_1937, putative unch 89.5 3.7 0.00013 36.6 11.2 141 152-309 34-180 (265)
81 3ebb_A Phospholipase A2-activa 87.7 6.3 0.00021 36.1 12.1 122 83-204 160-286 (304)
82 4ady_A RPN2, 26S proteasome re 85.2 35 0.0012 36.2 17.5 11 152-162 508-518 (963)
83 3ebb_A Phospholipase A2-activa 84.2 5.4 0.00019 36.5 9.8 107 47-158 165-282 (304)
84 2db0_A 253AA long hypothetical 79.3 14 0.00048 31.9 9.6 83 211-308 53-136 (253)
85 1wa5_C Importin alpha RE-expor 73.2 40 0.0014 35.2 13.6 129 46-181 377-525 (960)
86 3u0r_A Apoptosis inhibitor 5; 73.2 20 0.00067 35.1 10.1 39 62-104 41-79 (507)
87 4ady_A RPN2, 26S proteasome re 67.9 1.3E+02 0.0044 31.9 16.4 135 148-310 538-678 (963)
88 3c2g_A SYS-1 protein; beta-cat 67.1 55 0.0019 31.0 11.3 119 86-205 258-379 (619)
89 2x19_B Importin-13; nuclear tr 66.1 1.3E+02 0.0043 31.1 17.6 63 81-147 499-562 (963)
90 2f31_A Diaphanous protein homo 64.4 34 0.0012 29.6 9.2 138 69-207 41-212 (233)
91 2x1g_F Cadmus; transport prote 64.3 96 0.0033 32.2 14.2 209 83-307 476-721 (971)
92 3eg5_B Protein diaphanous homo 63.3 59 0.002 30.5 11.2 138 70-208 108-279 (383)
93 2db0_A 253AA long hypothetical 62.9 74 0.0025 27.4 15.4 206 69-307 30-245 (253)
94 2qk1_A Protein STU2; STU2P, XM 59.7 15 0.0005 32.2 5.9 128 45-180 31-174 (249)
95 3u0r_A Apoptosis inhibitor 5; 59.5 29 0.00099 33.9 8.2 71 44-125 42-113 (507)
96 2bnx_A Diaphanous protein homo 57.0 62 0.0021 30.3 10.1 138 70-208 46-217 (386)
97 2f31_A Diaphanous protein homo 52.2 11 0.00038 32.8 3.7 66 267-333 34-108 (233)
98 2iw3_A Elongation factor 3A; a 47.1 2.9E+02 0.0098 29.4 17.2 219 71-306 54-322 (986)
99 3eg5_B Protein diaphanous homo 41.1 25 0.00085 33.1 4.5 67 266-333 99-174 (383)
100 2qk1_A Protein STU2; STU2P, XM 40.9 22 0.00075 31.0 3.9 67 72-138 147-219 (249)
101 1mhq_A ADP-ribosylation factor 40.5 13 0.00044 30.2 2.1 69 71-139 38-116 (148)
102 1wa5_C Importin alpha RE-expor 36.2 2.7E+02 0.0092 28.8 12.1 81 79-162 463-559 (960)
103 3g2s_A C-terminal fragment of 33.9 18 0.0006 29.5 1.9 68 72-139 49-126 (149)
104 1juq_A ADP-ribosylation factor 33.0 25 0.00084 29.2 2.7 68 72-139 51-128 (171)
105 4ffb_C Protein STU2; tubulin f 31.9 2E+02 0.0068 24.8 8.8 101 72-178 56-165 (278)
106 3zyq_A Hepatocyte growth facto 30.7 22 0.00075 30.9 2.1 69 71-139 45-118 (226)
107 2bnx_A Diaphanous protein homo 29.4 41 0.0014 31.6 3.9 66 267-333 38-112 (386)
108 3ldz_A STAM-1, signal transduc 27.5 31 0.0011 27.5 2.3 69 71-139 42-114 (140)
109 1x5b_A Signal transducing adap 27.2 36 0.0012 28.0 2.7 68 71-138 52-124 (163)
110 1lrv_A LRV, leucine-rich repea 26.3 1.5E+02 0.0051 25.8 6.8 52 74-125 125-183 (244)
111 2iw3_A Elongation factor 3A; a 25.8 1.9E+02 0.0064 30.8 8.5 156 70-235 132-296 (986)
112 3gae_A Protein DOA1; UFD3, CDC 25.1 42 0.0014 29.6 2.9 77 82-161 101-189 (253)
113 4ffb_C Protein STU2; tubulin f 21.3 76 0.0026 27.6 3.9 103 68-178 99-209 (278)
114 1dvp_A HRS, hepatocyte growth 21.3 45 0.0015 28.6 2.3 67 72-138 43-114 (220)
No 1
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=7.5e-27 Score=230.92 Aligned_cols=288 Identities=18% Similarity=0.155 Sum_probs=219.6
Q ss_pred CcchhHHHHHHHhcccch-hhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhc
Q psy12638 44 PKSKREGRQDSRKLSVYH-VNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLL 121 (334)
Q Consensus 44 ~~~~~~A~~~L~~LSi~~-enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL 121 (334)
+..|..|+.+|.+++... ++|..+.+.|+||+|+++|.+++++++..|+.+|.||+.+ +++|..|++.|+||+|+++|
T Consensus 16 ~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL 95 (457)
T 1xm9_A 16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL 95 (457)
T ss_dssp THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 456789999999999754 5788999999999999999999999999999999999997 89999999999999999999
Q ss_pred c-C--CchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhcc-------CC--------CCchHHHHHHHHHHHccCc
Q psy12638 122 E-E--GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLV-------EQ--------DDETDNVLVALCINLALNS 183 (334)
Q Consensus 122 ~-~--~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~-------~~--------~~~~~~~~~~ll~nLs~~~ 183 (334)
+ + ++.++.|+.+|+|||.++++|..+.+ |++|+|+++|.. ++ +..+...+...+.||+.++
T Consensus 96 ~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~ 174 (457)
T 1xm9_A 96 RRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD 174 (457)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSH
T ss_pred hhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCH
Confidence 7 4 46789999999999999999999999 999999999931 11 1233336778899999999
Q ss_pred chHHHHHhc-CchHHHHHHHhcC------ChHH---HHHHHHHHhcCC--------------------------------
Q psy12638 184 RNAELMLKN-RQLELLMIQAFTQ------KNIL---LLKVIRNMSIHS-------------------------------- 221 (334)
Q Consensus 184 ~n~~~i~~~-~gl~~Lv~~l~~~------~d~~---~~k~l~nLa~~~-------------------------------- 221 (334)
++++.|.+. |++++|+.++.++ ++.. .+.+++|++...
T Consensus 175 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (457)
T 1xm9_A 175 AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKS 254 (457)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccc
Confidence 999999997 9999999998752 2222 355688886310
Q ss_pred -------------------Cchhhh--hhhHHHHHHHhhcCCcc------------------c---h----hHHhhcHH-
Q psy12638 222 -------------------NVKHYF--VDYIGDIANCVQKEKDE------------------N---I----KLECLGTL- 254 (334)
Q Consensus 222 -------------------~~~~~f--~~~i~~L~~~l~~~~~~------------------~---~----~ve~Lg~l- 254 (334)
...+.+ .+.++.|+.++.+++.. + . .+.--|.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~ 334 (457)
T 1xm9_A 255 DKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP 334 (457)
T ss_dssp -----------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHH
T ss_pred hhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCch
Confidence 011111 35566666655433210 0 0 01001111
Q ss_pred ---------------HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccC----CchHHHHHHHHHHHHHcCchhhHH
Q psy12638 255 ---------------EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQE----DDEIVLQILYVFYQICRHASCQNY 315 (334)
Q Consensus 255 ---------------eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~----dde~vlqi~~~l~~l~~~~~~~~~ 315 (334)
+|+.+|++++.+++.+..+.+ |+||+|+++|..+.. +++++..++.+++.++.+++....
T Consensus 335 ~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~ 413 (457)
T 1xm9_A 335 QIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAK 413 (457)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHH
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 689999999999888877765 679999999986432 357888999999999877664334
Q ss_pred HhhcCCcHHHHHHhhhcC
Q psy12638 316 LIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 316 i~~~~~i~~~Li~LL~d~ 333 (334)
.+.+.+.+..|++|++++
T Consensus 414 ~i~~~g~l~~L~~L~~~~ 431 (457)
T 1xm9_A 414 QYFSSSMLNNIINLCRSS 431 (457)
T ss_dssp HHCCHHHHHHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHcCC
Confidence 444456666999999876
No 2
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=2.2e-27 Score=227.82 Aligned_cols=260 Identities=16% Similarity=0.185 Sum_probs=214.6
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccC-----------CChhHHHHHHHHHHhhcCCh-hHHHHHHh-c
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMI-----------EDSNLQSSTLKLLFNLSFDT-NLREKIIK-I 111 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~-----------~~~~l~~~al~~L~NLS~d~-~~r~~iv~-~ 111 (334)
.++..|+.+|.|+|.+++||..|.+.|++++|+.+|.+ ++..++..|+.+|.||++++ ++|..+.. .
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 56669999999999999999999999999999999953 24679999999999999875 58888865 5
Q ss_pred CChHHHHHhccC--CchHHHHHHHHHHccCC--hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchH
Q psy12638 112 GFLPKLVSLLEE--GKHQKIILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNA 186 (334)
Q Consensus 112 g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~--~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~ 186 (334)
|+||+||.+|++ ++.++.|+.+|.|||.. +++|..|.+.|+||+|+++|.+..+..+.+.++.++.||+. +++++
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 669999999964 56799999999999974 68999999999999999987554566776777789999998 77899
Q ss_pred HHHH-hcCchHHHHHHHhcCCh----HH---HHHHHHHHhc----CCCchhhh--hhhHHHHHHHhhcCCccchhHHhhc
Q psy12638 187 ELML-KNRQLELLMIQAFTQKN----IL---LLKVIRNMSI----HSNVKHYF--VDYIGDIANCVQKEKDENIKLECLG 252 (334)
Q Consensus 187 ~~i~-~~~gl~~Lv~~l~~~~d----~~---~~k~l~nLa~----~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg 252 (334)
..|+ ..|++++|++++.++.+ .+ +..+++|+|. ++..++.+ .++++.|++++.+++ .+.. +
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~-~--- 281 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIV-S--- 281 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHH-H---
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHH-H---
Confidence 9998 78999999999986654 23 3567999996 44455554 478999999987544 2222 2
Q ss_pred HHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhh
Q psy12638 253 TLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQ 313 (334)
Q Consensus 253 ~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~ 313 (334)
+|+.+|++++. +++.++.+.+.|+||+|+++|++ .++++.-.++.++..|+.+++.+
T Consensus 282 --~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s--~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 282 --NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp --HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCCGG
T ss_pred --HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHHH
Confidence 36778899995 78889999999999999999985 45688888999999999887754
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=1.3e-26 Score=234.77 Aligned_cols=290 Identities=16% Similarity=0.164 Sum_probs=221.4
Q ss_pred cccCcchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHH
Q psy12638 41 LIVPKSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKL 117 (334)
Q Consensus 41 ~~~~~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~L 117 (334)
..-+..|.+|+.+|.+++. ..+||..+.+.|+||+|+++|.+++.++++.|+.+|.|||.+ +++|..|++.|+||+|
T Consensus 59 s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~L 138 (584)
T 3l6x_A 59 FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHH
Confidence 3344667799999999996 788999999999999999999999999999999999999983 8999999999999999
Q ss_pred HHhccC---CchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhc-----------------cCCCCchHHHHHHHHH
Q psy12638 118 VSLLEE---GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLL-----------------VEQDDETDNVLVALCI 177 (334)
Q Consensus 118 v~lL~~---~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~-----------------~~~~~~~~~~~~~ll~ 177 (334)
|++|++ ++.++.|+.+|++||.++++|..|.+ ++||+|++++. +.+++.+...+..++.
T Consensus 139 V~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~ 217 (584)
T 3l6x_A 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLR 217 (584)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHH
Confidence 999963 35689999999999999999999995 68999999882 1123466667778999
Q ss_pred HHccCcc-hHHHHHhcCc-hHHHHHHHhcC------ChHH---HHHHHHHHhcCCC----c-------------------
Q psy12638 178 NLALNSR-NAELMLKNRQ-LELLMIQAFTQ------KNIL---LLKVIRNMSIHSN----V------------------- 223 (334)
Q Consensus 178 nLs~~~~-n~~~i~~~~g-l~~Lv~~l~~~------~d~~---~~k~l~nLa~~~~----~------------------- 223 (334)
|||.+.+ +++.|.+.+| +++||..+.+. ++.. .+.+++|||..-. .
T Consensus 218 NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 297 (584)
T 3l6x_A 218 NVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSP 297 (584)
T ss_dssp HHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CC
T ss_pred HHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccC
Confidence 9998765 5999998655 46999987642 2332 4667899887610 0
Q ss_pred --hhh--h-hhhHHHHHHHhhcCCccchhHH---------------------------hhcHH-------------HHHH
Q psy12638 224 --KHY--F-VDYIGDIANCVQKEKDENIKLE---------------------------CLGTL-------------EVIN 258 (334)
Q Consensus 224 --~~~--f-~~~i~~L~~~l~~~~~~~~~ve---------------------------~Lg~l-------------eav~ 258 (334)
... + .+.+..|+.++..+...+.... .+-.+ .++.
T Consensus 298 ~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~ 377 (584)
T 3l6x_A 298 ARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASG 377 (584)
T ss_dssp CCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred chhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 000 1 2456666666643321111100 01111 5888
Q ss_pred HHHHhcCCcchHHHhhhCCchHHHHHHhccccC------CchHHHHHHHHHHHHHcC-chhhHHHhhcCCcHHHHHHhhh
Q psy12638 259 FIGTAASDPISAEHFCKNSTVDLLINLLKEMQE------DDEIVLQILYVFYQICRH-ASCQNYLIKETDAPAYMIDLLN 331 (334)
Q Consensus 259 ~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~------dde~vlqi~~~l~~l~~~-~~~~~~i~~~~~i~~~Li~LL~ 331 (334)
+|++++.++..+..+ ..|+||.|+++|..... .++++..++.+++.++.. +..++.+....+++ .|++||+
T Consensus 378 aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~-~Lv~LL~ 455 (584)
T 3l6x_A 378 ALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIE-KLVLINK 455 (584)
T ss_dssp HHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH-HHHHHHT
T ss_pred HHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChH-HHHHHHh
Confidence 999999988877777 56889999999986532 468888899999998754 55777777665555 9999998
Q ss_pred cC
Q psy12638 332 DG 333 (334)
Q Consensus 332 d~ 333 (334)
++
T Consensus 456 s~ 457 (584)
T 3l6x_A 456 SG 457 (584)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=228.72 Aligned_cols=254 Identities=16% Similarity=0.190 Sum_probs=210.7
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccC-----------CChhHHHHHHHHHHhhcCCh-hHHHHHHh-cCChH
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMI-----------EDSNLQSSTLKLLFNLSFDT-NLREKIIK-IGFLP 115 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~-----------~~~~l~~~al~~L~NLS~d~-~~r~~iv~-~g~Ip 115 (334)
+|+.+|.|+|.+++||..|.+.|++++|+++|.+ ++..++..|+.+|.||++++ ++|..+.. .|+||
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 8999999999999999999999999999999953 34678999999999999976 57777764 56699
Q ss_pred HHHHhcc--CCchHHHHHHHHHHccC--ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHH
Q psy12638 116 KLVSLLE--EGKHQKIILQLLYHLSI--EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELML 190 (334)
Q Consensus 116 ~Lv~lL~--~~~~~~~al~~L~~LS~--~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~ 190 (334)
+||.+|+ +++.++.|+.+|.+||. ++++|..|.+.|+||+|+++|.+..+..+.+.++.++.||+. +++++..|+
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999996 45689999999999998 468999999999999999987655566777777789999998 889999998
Q ss_pred -hcCchHHHHHHHhcCChH----H---HHHHHHHHhc----CCCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHH
Q psy12638 191 -KNRQLELLMIQAFTQKNI----L---LLKVIRNMSI----HSNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEV 256 (334)
Q Consensus 191 -~~~gl~~Lv~~l~~~~d~----~---~~k~l~nLa~----~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~lea 256 (334)
..||+++|++++.++.+. + +..+++|+|. ++..++.+ .++++.|+.++..++. +... +|
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~-~v~~------~A 399 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL-TIVS------NA 399 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCH-HHHH------HH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCCh-HHHH------HH
Confidence 789999999999876542 3 3567999996 44445544 4889999999876542 2222 36
Q ss_pred HHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch
Q psy12638 257 INFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS 311 (334)
Q Consensus 257 v~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~ 311 (334)
+.+|++++. +++.+..+.+.|+||+|+++|++ .++++.-.++.++..|+.+++
T Consensus 400 ~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s--~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 400 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCH
Confidence 778899994 78889999999999999999985 456888889999999998765
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.94 E-value=4.3e-26 Score=225.63 Aligned_cols=304 Identities=15% Similarity=0.177 Sum_probs=231.3
Q ss_pred cccccc---hhhhcccCCcceeeccc----CcchhHHHHHHHhccc-chhhHHHhHhCCcc----------hHHHhhccC
Q psy12638 21 TRNAGV---KAQRFDRGNCNCYGLIV----PKSKREGRQDSRKLSV-YHVNKEQMANLNLI----------EKLPRILMI 82 (334)
Q Consensus 21 ~~~~~~---~~~~~~r~~~~~~~~~~----~~~~~~A~~~L~~LSi-~~enk~~m~~~g~I----------~~Lv~LL~~ 82 (334)
+++.|+ .++.+.+.+.+-...+. +..+.+|+.+|.++.. .++.+..-.+.|++ +.+++++.+
T Consensus 66 ~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (458)
T 3nmz_A 66 MRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145 (458)
T ss_dssp HHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 455555 45555543332222222 2556699999999986 67788888888888 667777876
Q ss_pred CC--h------------hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc-------------CCchHHHHHHHHH
Q psy12638 83 ED--S------------NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE-------------EGKHQKIILQLLY 135 (334)
Q Consensus 83 ~~--~------------~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~-------------~~~~~~~al~~L~ 135 (334)
.. . +.+..|+.+|.|+|+|+++|..|++.|++|+|+.+|. ++..+..|+.+|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred hccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 53 1 2345999999999999999999999999999999993 2346888999999
Q ss_pred HccCCh-hhhhHhhc-cCcHHHHHHHhccCCCCchHHHHHHHHHHHcc--CcchHHHHHhcCchHHHHHHHhcCChH-H-
Q psy12638 136 HLSIED-RVKAMFAY-TNCMSLLMNMLLVEQDDETDNVLVALCINLAL--NSRNAELMLKNRQLELLMIQAFTQKNI-L- 209 (334)
Q Consensus 136 ~LS~~~-~~r~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~--~~~n~~~i~~~~gl~~Lv~~l~~~~d~-~- 209 (334)
||+.++ .+|..+.. .|+||+|+++|.+ ++++++..+...+.||+. +++++..|.+.||+++|++++.++.++ .
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 999865 48888864 5669999999985 567777778788999997 468999999999999999987765444 3
Q ss_pred --HHHHHHHHhcCC-Cchhhh---hhhHHHHHHHhhcCCcc---chhHHhhcHHHHHHHHHHhc----CCcchHHHhhhC
Q psy12638 210 --LLKVIRNMSIHS-NVKHYF---VDYIGDIANCVQKEKDE---NIKLECLGTLEVINFIGTAA----SDPISAEHFCKN 276 (334)
Q Consensus 210 --~~k~l~nLa~~~-~~~~~f---~~~i~~L~~~l~~~~~~---~~~ve~Lg~leav~~lg~la----~~~~~~~~l~~~ 276 (334)
++.+++|||.+. .++..+ .++++.|++++...+.. +...+ ++.+|.+++ .+++.++.+.+.
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~------A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES------GGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHH------HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHH------HHHHHHHHHhcccCCHHHHHHHHHc
Confidence 356899999954 455444 48999999998765432 12222 455667776 478888999999
Q ss_pred CchHHHHHHhccccCCchHHHHHHHHHHHHHc-CchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 277 STVDLLINLLKEMQEDDEIVLQILYVFYQICR-HASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~-~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
|+||+|+++|+. .+++++-+++.++..++. +++.++.+.+.+.++ .|++||++++
T Consensus 379 G~i~~Lv~LL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~-~Lv~LL~s~~ 434 (458)
T 3nmz_A 379 NCLQTLLQHLKS--HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS-MLKNLIHSKH 434 (458)
T ss_dssp THHHHHHHHSSC--SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHH-HHHTTTTCSS
T ss_pred ccHHHHHHHHcC--CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH-HHHHHHhCCC
Confidence 999999999984 456789999999999994 566787777765455 9999998764
No 6
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.93 E-value=2.9e-24 Score=212.85 Aligned_cols=281 Identities=15% Similarity=0.153 Sum_probs=233.1
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE 123 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~ 123 (334)
..++.|+..|.+||..++|+..+.+.|++|+|++++.+++++++..|+.+|.||+.+ ++.+..+++.|+||.|++++++
T Consensus 75 ~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~ 154 (529)
T 1jdh_A 75 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 154 (529)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc
Confidence 356789999999999999999999999999999999999999999999999999997 5789999999999999999975
Q ss_pred C--chHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638 124 G--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI 200 (334)
Q Consensus 124 ~--~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~ 200 (334)
+ ..+..++..|.+++. ++++|..+.+.|+++.|++++.++..+.....+..++.||+.+++++..+.+.|++++|++
T Consensus 155 ~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ 234 (529)
T 1jdh_A 155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 234 (529)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence 4 457778889999987 4789999999999999999998765555555556788999999999999999999999999
Q ss_pred HHhcCChHH---HHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhhC
Q psy12638 201 QAFTQKNIL---LLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCKN 276 (334)
Q Consensus 201 ~l~~~~d~~---~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~~ 276 (334)
.+.+++..+ +..+++|++.+.+......+.++.|++++...+ .+. .+ .++.+++.++.. ++.+..+.+.
T Consensus 235 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~-~~v-~~-----~a~~~L~~L~~~~~~~~~~~~~~ 307 (529)
T 1jdh_A 235 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-INV-VT-----CAAGILSNLTCNNYKNKMMVCQV 307 (529)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC-HHH-HH-----HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC-HHH-HH-----HHHHHHHHHhcCCHHHHHHHHHc
Confidence 987765443 366799999887554435688999999885433 222 22 267788999885 5688899999
Q ss_pred CchHHHHHHhccccCCchHHHHHHHHHHHHHcCch----hhHHHhhcCCcHHHHHHhhhcC
Q psy12638 277 STVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS----CQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~----~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
|++|.|+++|....+++++...++.+++.++.+++ .+..+...++++ .|+++|++.
T Consensus 308 ~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~-~L~~lL~~~ 367 (529)
T 1jdh_A 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP-VVVKLLHPP 367 (529)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHH-HHHHTTSTT
T ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChh-HHHHHhccc
Confidence 99999999998766667899999999999987643 355666655555 999999875
No 7
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.92 E-value=7.9e-25 Score=210.08 Aligned_cols=245 Identities=18% Similarity=0.208 Sum_probs=196.0
Q ss_pred ccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc-------------CCchHHHHHHHHHHccCCh-hhhh
Q psy12638 80 LMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE-------------EGKHQKIILQLLYHLSIED-RVKA 145 (334)
Q Consensus 80 L~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~-------------~~~~~~~al~~L~~LS~~~-~~r~ 145 (334)
.+.+..+.++.|+.+|.|+|+|+++|..|++.|++|+|+.+|. ++..+..|+.+|.||+..+ ++|.
T Consensus 41 ~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp CCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5566668888999999999999999999999999999999994 2456889999999999865 5899
Q ss_pred Hhhc-cCcHHHHHHHhccCCCCchHHHHHHHHHHHccC--cchHHHHHhcCchHHHHHHHhcCChH-H---HHHHHHHHh
Q psy12638 146 MFAY-TNCMSLLMNMLLVEQDDETDNVLVALCINLALN--SRNAELMLKNRQLELLMIQAFTQKNI-L---LLKVIRNMS 218 (334)
Q Consensus 146 ~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~--~~n~~~i~~~~gl~~Lv~~l~~~~d~-~---~~k~l~nLa 218 (334)
.|.. .|+||+|+++|.+ ++++++..++..+.||+.. ++++..|.+.||+++|++++.++.++ . +..+++|||
T Consensus 121 ~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8865 4569999999985 5677777787889999974 68999999999999999987665444 3 356899999
Q ss_pred cCC-Cchhhh---hhhHHHHHHHhhcCCcc---chhHHhhcHHHHHHHHHHhcC----CcchHHHhhhCCchHHHHHHhc
Q psy12638 219 IHS-NVKHYF---VDYIGDIANCVQKEKDE---NIKLECLGTLEVINFIGTAAS----DPISAEHFCKNSTVDLLINLLK 287 (334)
Q Consensus 219 ~~~-~~~~~f---~~~i~~L~~~l~~~~~~---~~~ve~Lg~leav~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~ 287 (334)
.+. .++..+ .++++.|++++...+.. +...+ ++.+|.+++. +++.++.+.+.|++|+|+++|+
T Consensus 200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~------A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~ 273 (354)
T 3nmw_A 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES------GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273 (354)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHH------HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT
T ss_pred ccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHH------HHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc
Confidence 965 444444 48999999998765432 12222 4555677764 7888999999999999999998
Q ss_pred cccCCchHHHHHHHHHHHHHc-CchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 288 EMQEDDEIVLQILYVFYQICR-HASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 288 ~~~~dde~vlqi~~~l~~l~~-~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
. .+++++-+++.++..++. +++.++.+.+. +++..|++||++++
T Consensus 274 ~--~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~-G~i~~Lv~LL~s~~ 318 (354)
T 3nmw_A 274 S--HSLTIVSNACGTLWNLSARNPKDQEALWDM-GAVSMLKNLIHSKH 318 (354)
T ss_dssp C--SCHHHHHHHHHHHHHHTSSCHHHHHHHHHT-THHHHHHTTTTCSS
T ss_pred C--CChHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCHHHHHHHHhCCC
Confidence 4 456789999999999995 56677777765 55559999998764
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.92 E-value=8e-24 Score=221.15 Aligned_cols=278 Identities=15% Similarity=0.119 Sum_probs=220.0
Q ss_pred chhHHHHHHHhcccch------------------------------hhH---HHhHhCCcchHHHhhccCCChhHHHHHH
Q psy12638 46 SKREGRQDSRKLSVYH------------------------------VNK---EQMANLNLIEKLPRILMIEDSNLQSSTL 92 (334)
Q Consensus 46 ~~~~A~~~L~~LSi~~------------------------------enk---~~m~~~g~I~~Lv~LL~~~~~~l~~~al 92 (334)
-+..|++.|.+++... .++ ..+.+.|+||+|++++.++++.+++.|+
T Consensus 437 i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa 516 (810)
T 3now_A 437 CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIA 516 (810)
T ss_dssp GHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHH
Confidence 3458899999999743 234 6789999999999999999999999999
Q ss_pred HHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhc---cCcHHHHHHHhccCCCCc
Q psy12638 93 KLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAY---TNCMSLLMNMLLVEQDDE 167 (334)
Q Consensus 93 ~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~---t~~i~~Lv~LL~~~~~~~ 167 (334)
.+|.|||.|+++|..+++.|+||+|+.+|+ ++..++.|+.+|.+|+.+......|.. .|++|+|+++|.++....
T Consensus 517 ~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l 596 (810)
T 3now_A 517 RVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTAL 596 (810)
T ss_dssp HHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHH
Confidence 999999999999999999999999999995 446789999999999876544554432 469999999997532223
Q ss_pred hHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCChHH---HHHHHHHHhcCCCchhhhh---hhHHHHHHHhhc
Q psy12638 168 TDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHYFV---DYIGDIANCVQK 240 (334)
Q Consensus 168 ~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~f~---~~i~~L~~~l~~ 240 (334)
.+.+++..+.||+.. +++++.|+++||+++|+.++.+++..+ +..++.|++.+++....|. +.++.|+.++..
T Consensus 597 ~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC
Confidence 334677788999876 578999999999999999998776544 4778999999877655553 578888887755
Q ss_pred CCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhh-CCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHh
Q psy12638 241 EKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCK-NSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLI 317 (334)
Q Consensus 241 ~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~-~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~ 317 (334)
.+ .+.. + +|+.+|+.++. ++...+.+.+ .|++|+|+++|+ .+|+++.-.++.+++.++.+++ .++.+.
T Consensus 677 ~d-~~vq-~-----~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~--s~d~~vq~~A~~aL~NL~~~s~e~~~~l~ 747 (810)
T 3now_A 677 ED-EETA-T-----ACAGALAIITSVSVKCCEKILAIASWLDILHTLIA--NPSPAVQHRGIVIILNMINAGEEIAKKLF 747 (810)
T ss_dssp SS-HHHH-H-----HHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CC-HHHH-H-----HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC--CCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33 2221 1 36788899988 6666666666 899999999998 5678999999999999998655 565566
Q ss_pred hcCCcHHHHHHhhhcC
Q psy12638 318 KETDAPAYMIDLLNDG 333 (334)
Q Consensus 318 ~~~~i~~~Li~LL~d~ 333 (334)
+ .++..+|++||++.
T Consensus 748 e-~G~i~~L~~LL~~~ 762 (810)
T 3now_A 748 E-TDIMELLSGLGQLP 762 (810)
T ss_dssp T-STHHHHHTTSCCCT
T ss_pred H-CCCHHHHHHHHhCc
Confidence 5 46666999999653
No 9
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=3.4e-23 Score=212.36 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=230.7
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE 123 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~ 123 (334)
..|+.|+.+|.+||...+|+..+.+.|+++.|+++|.++++.++..|+.+|.||+.+ ++.+..+++.|+||.|+++|++
T Consensus 72 ~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~ 151 (644)
T 2z6h_A 72 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 151 (644)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc
Confidence 456789999999999999999999999999999999999999999999999999987 5788899999999999999975
Q ss_pred C--chHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638 124 G--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI 200 (334)
Q Consensus 124 ~--~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~ 200 (334)
+ ..+..++.+|.+|+. ++++|..+.+.|+++.|++++.+...+.....+..++.||+.+++++..+++.|+++.|+.
T Consensus 152 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ 231 (644)
T 2z6h_A 152 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 231 (644)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence 4 456667779999996 7899999999999999999998765555555667889999999999999999999999999
Q ss_pred HHhcCChHH---HHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhhC
Q psy12638 201 QAFTQKNIL---LLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCKN 276 (334)
Q Consensus 201 ~l~~~~d~~---~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~~ 276 (334)
.+.+++..+ ++.+++|++.+.+......+.++.|++++...+ .+ ..+ .++.+++.++.. ++.+..+.+.
T Consensus 232 ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d-~~-v~~-----~a~~aL~~L~~~~~~~~~~v~~~ 304 (644)
T 2z6h_A 232 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-IN-VVT-----CAAGILSNLTCNNYKNKMMVCQV 304 (644)
T ss_dssp TTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC-HH-HHH-----HHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC-HH-HHH-----HHHHHHHHHHcCCHHHHHHHHHc
Confidence 987765554 366799999876543335688999999886433 22 222 267788999885 5678889999
Q ss_pred CchHHHHHHhccccCCchHHHHHHHHHHHHHcCch----hhHHHhhcCCcHHHHHHhhhcC
Q psy12638 277 STVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS----CQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~----~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
|++|.|+++|....+.+++...++.+++.++.+.+ .+..+... +.+..|+++|++.
T Consensus 305 g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~-~~l~~L~~lL~~~ 364 (644)
T 2z6h_A 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH-YGLPVVVKLLHPP 364 (644)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT-THHHHHHHTTSTT
T ss_pred CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHc-cChHHHHHHhCcc
Confidence 99999999998655446899999999999987543 34435544 4455999999864
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.91 E-value=3.5e-23 Score=204.60 Aligned_cols=257 Identities=17% Similarity=0.160 Sum_probs=203.3
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCC-hhhhhHh
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIE-DRVKAMF 147 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~-~~~r~~i 147 (334)
.+|.|+++|.+++++++..|+.+|.||+.+ +.+|..+++.|+||+||++|++ +..+..|+..|.|||.+ +++|..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 589999999999999999999999999986 4779899999999999999964 45789999999999987 8999999
Q ss_pred hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhc--------C-------ChH----
Q psy12638 148 AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFT--------Q-------KNI---- 208 (334)
Q Consensus 148 ~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~--------~-------~d~---- 208 (334)
.+.|+||+|+++|...++.+++..++..+.||+.+++++..+.+ |++|+|++++.. + .++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999998445678878888899999999999999999 999999999842 1 111
Q ss_pred HHHHHHHHHhcCCCchhhhh---hhHHHHHHHhhcC-----Cccchh---------------------------------
Q psy12638 209 LLLKVIRNMSIHSNVKHYFV---DYIGDIANCVQKE-----KDENIK--------------------------------- 247 (334)
Q Consensus 209 ~~~k~l~nLa~~~~~~~~f~---~~i~~L~~~l~~~-----~~~~~~--------------------------------- 247 (334)
-+..+++|+|.++.+++.+. +.++.|+.++.++ .+.+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 34668999999855555543 8899998887641 011100
Q ss_pred ----------------------------------HHhh----------cHH----------HHHHHHHHhcCC-cch---
Q psy12638 248 ----------------------------------LECL----------GTL----------EVINFIGTAASD-PIS--- 269 (334)
Q Consensus 248 ----------------------------------ve~L----------g~l----------eav~~lg~la~~-~~~--- 269 (334)
++.+ ..+ .++.+|++++.. ..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 0000 001 367889999873 222
Q ss_pred --HHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcC
Q psy12638 270 --AEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 270 --~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
+..+.+.|++|+|+++|+. .+++++-.++.++..++.++..++.+.. ..+| .|+++|.+.
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~--~~~~v~~~A~~aL~nls~~~~~~~~i~~-~~i~-~Lv~lL~~~ 383 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQS--GNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFP-EVTRLLTSH 383 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHH-HHHHTTTSC
T ss_pred HHHHHHHHcCCchHHHHHHhC--CCHhHHHHHHHHHHHHhcCHHHHHHHHH-hhhH-HHHHhccCC
Confidence 3345678999999999984 5679999999999999998888766654 4666 999999875
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.91 E-value=1.6e-23 Score=218.92 Aligned_cols=281 Identities=12% Similarity=0.098 Sum_probs=226.4
Q ss_pred CcchhHHHHHHHhcccchhhHHHhHh-CCcchHHHhhccCCChhHHHHHHHHHHhhcCCh--------------------
Q psy12638 44 PKSKREGRQDSRKLSVYHVNKEQMAN-LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-------------------- 102 (334)
Q Consensus 44 ~~~~~~A~~~L~~LSi~~enk~~m~~-~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-------------------- 102 (334)
+..++.|+..|..||..+++|..+.. .|+||+|+++|++++..++..|+.+|.||+.+.
T Consensus 393 ~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v 472 (810)
T 3now_A 393 KDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHI 472 (810)
T ss_dssp SSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSC
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccC
Confidence 35688999999999999999999986 799999999999999999999999999999854
Q ss_pred ----------hHH---HHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCc
Q psy12638 103 ----------NLR---EKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDE 167 (334)
Q Consensus 103 ----------~~r---~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~ 167 (334)
.++ ..+++.|+||.|+.+|+ ++..++.|+.+|+|||.++++|..+.+.|++|+|+.+|.++ ...
T Consensus 473 ~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~ 551 (810)
T 3now_A 473 PEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-TEK 551 (810)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-CHH
T ss_pred ccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-CHH
Confidence 234 78899999999999996 45689999999999999999999999999999999999864 456
Q ss_pred hHHHHHHHHHHHccCcchHHHH---HhcCchHHHHHHHhcCChHH----HHHHHHHHhcCCCc-hhhh--hhhHHHHHHH
Q psy12638 168 TDNVLVALCINLALNSRNAELM---LKNRQLELLMIQAFTQKNIL----LLKVIRNMSIHSNV-KHYF--VDYIGDIANC 237 (334)
Q Consensus 168 ~~~~~~~ll~nLs~~~~n~~~i---~~~~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~~~~-~~~f--~~~i~~L~~~ 237 (334)
.++.++..+.||+.+......+ ...|++++|++++.++.+.. ++.+++||+.+++. ++.+ .+++++|+.+
T Consensus 552 ~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~L 631 (810)
T 3now_A 552 GKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYY 631 (810)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence 6667777888987543333222 11259999999886543332 46789999998643 4443 4789999998
Q ss_pred hhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhh-CCchHHHHHHhccccCCchHHHHHHHHHHHHHc-CchhhHH
Q psy12638 238 VQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCK-NSTVDLLINLLKEMQEDDEIVLQILYVFYQICR-HASCQNY 315 (334)
Q Consensus 238 l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~-~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~-~~~~~~~ 315 (334)
+.+.+ ..+.+ .|+.++++++.+++.+..+.+ .|.+|.|+.++.+ +|.++.-+++.++..++. ++..++.
T Consensus 632 L~s~~--~~Vq~-----~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s--~d~~vq~~Aa~ALanLt~~s~~~~~~ 702 (810)
T 3now_A 632 LMEDH--LYLTR-----AAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED--EDEETATACAGALAIITSVSVKCCEK 702 (810)
T ss_dssp HHSCC--TTHHH-----HHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HcCCC--HHHHH-----HHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 86543 22222 277888999999888887775 6899999999974 667899999999999998 5667777
Q ss_pred HhhcCCcHHHHHHhhhcCC
Q psy12638 316 LIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 316 i~~~~~i~~~Li~LL~d~n 334 (334)
++...+.+.+|++||++.+
T Consensus 703 ii~~~g~I~~Lv~LL~s~d 721 (810)
T 3now_A 703 ILAIASWLDILHTLIANPS 721 (810)
T ss_dssp HHTSTTHHHHHHHHHTCSS
T ss_pred HHHHcCCHHHHHHHHCCCC
Confidence 8874455559999998764
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.91 E-value=3.7e-23 Score=209.58 Aligned_cols=264 Identities=15% Similarity=0.181 Sum_probs=205.8
Q ss_pred HHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccC--
Q psy12638 65 EQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSI-- 139 (334)
Q Consensus 65 ~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~-- 139 (334)
..-.+.+.||.|+++|.+++++++..|+..|.||++ ++++|..+++.|+||+||++|++ +..++.|+..|.|||.
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 445567899999999999999999999999999997 68999999999999999999964 5679999999999998
Q ss_pred ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhc---------------
Q psy12638 140 EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFT--------------- 204 (334)
Q Consensus 140 ~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~--------------- 204 (334)
++++|..|.+.|+||+|+++|.++.+..++..+..++.|||.+++++..|++ +|+++|++++..
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC---------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccc
Confidence 3899999999999999999998755666777777899999999999999997 489999998731
Q ss_pred --CChHH----HHHHHHHHhcCCCc-hhhh---hhhHHHHHHHhhcC----C-ccch-----------------------
Q psy12638 205 --QKNIL----LLKVIRNMSIHSNV-KHYF---VDYIGDIANCVQKE----K-DENI----------------------- 246 (334)
Q Consensus 205 --~~d~~----~~k~l~nLa~~~~~-~~~f---~~~i~~L~~~l~~~----~-~~~~----------------------- 246 (334)
..++. +..+++|||.++++ ++.+ .+.++.|++++..+ + ..+.
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 11222 36689999998765 5543 35566777766431 0 0000
Q ss_pred -------------------hHHhh----------cHH----------HHHHHHHHhcCCc-----chHHHhhhCCchHHH
Q psy12638 247 -------------------KLECL----------GTL----------EVINFIGTAASDP-----ISAEHFCKNSTVDLL 282 (334)
Q Consensus 247 -------------------~ve~L----------g~l----------eav~~lg~la~~~-----~~~~~l~~~g~I~~L 282 (334)
.++.| ..+ .|+.+|..++... ..+..+.++|++|.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence 01111 111 4677898997632 234466778899999
Q ss_pred HHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcC
Q psy12638 283 INLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 283 v~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
++||.. .+++++..++.++..|+.++..+..| ...++| .||+||.+.
T Consensus 361 v~LL~s--~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip-~LV~LL~~~ 407 (584)
T 3l6x_A 361 ADLLTN--EHERVVKAASGALRNLAVDARNKELI-GKHAIP-NLVKNLPGG 407 (584)
T ss_dssp HHGGGC--SCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHH-HHHHTSSSS
T ss_pred HHHHcC--CCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHH-HHHHHhcCC
Confidence 999984 45689999999999999999988766 444555 999999764
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.90 E-value=2.2e-22 Score=201.26 Aligned_cols=279 Identities=14% Similarity=0.133 Sum_probs=219.3
Q ss_pred cchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638 45 KSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
.-|.+|+++|.+++. .++++..+++.|+||.|+++|.+++.++++.|+.+|.||+.| ++.|..+++.|++|+|+.+|.
T Consensus 116 ~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~ 195 (510)
T 3ul1_B 116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195 (510)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH
Confidence 446799999999965 678999999999999999999999999999999999999998 688999999999999999996
Q ss_pred CCc-------hHHHHHHHHHHccCChhhhhHhh-ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcch-HHHHHhcC
Q psy12638 123 EGK-------HQKIILQLLYHLSIEDRVKAMFA-YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRN-AELMLKNR 193 (334)
Q Consensus 123 ~~~-------~~~~al~~L~~LS~~~~~r~~i~-~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n-~~~i~~~~ 193 (334)
++. ....++..|.+++.....+..+. ..+++|.|++++.+ +++++...+...+.+|+.++.+ .+.+.+.|
T Consensus 196 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g 274 (510)
T 3ul1_B 196 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKG 274 (510)
T ss_dssp SSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred hccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhchhhhHHHHHhcc
Confidence 543 25568888999988765554443 36789999999975 5667777777788899876654 56677889
Q ss_pred chHHHHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-C
Q psy12638 194 QLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-D 266 (334)
Q Consensus 194 gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~ 266 (334)
+++.|++++.+.+..+ .+++++|++.+++.... + .++++.|+.++.+.+ .+. .+ +++.++++++. +
T Consensus 275 ~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~v-~~-----~A~~aL~nl~a~~ 347 (510)
T 3ul1_B 275 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNI-QK-----EATWTMSNITAGR 347 (510)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSS-HHH-HH-----HHHHHHHHHTTSC
T ss_pred cchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCC-HHH-HH-----HHHHHHHHHHcCc
Confidence 9999999988776665 36778999887655433 2 366676777665433 122 11 37788899987 5
Q ss_pred cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCc--hhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 267 PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHA--SCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 267 ~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~--~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
++....+.+.|++|+|+++|+ ..+.++.-.+++++..++.+. +.+..+++. +++..|++||++++
T Consensus 348 ~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~-g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 348 QDQIQQVVNHGLVPFLVGVLS--KADFKTQKEAAWAITNYTSGGTVEQIVYLVHC-GIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT-TCHHHHHHGGGCSC
T ss_pred HHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC-CCHHHHHHHhcCCC
Confidence 667788899999999999998 456789999999999998743 344556654 55559999998764
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.90 E-value=5.2e-22 Score=199.26 Aligned_cols=279 Identities=13% Similarity=0.124 Sum_probs=220.5
Q ss_pred cchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638 45 KSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
.-|.+|+.+|.+++. .++++..+.+.|+||+|+++|.+++.++++.|+.+|.|||.| +++|..+++.|++|+|+.+|.
T Consensus 135 ~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~ 214 (529)
T 3tpo_A 135 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214 (529)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHh
Confidence 356689999999986 567889999999999999999999999999999999999997 699999999999999999996
Q ss_pred CCc-------hHHHHHHHHHHccCChhhhhHhh-ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc-chHHHHHhcC
Q psy12638 123 EGK-------HQKIILQLLYHLSIEDRVKAMFA-YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS-RNAELMLKNR 193 (334)
Q Consensus 123 ~~~-------~~~~al~~L~~LS~~~~~r~~i~-~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~-~n~~~i~~~~ 193 (334)
.+. ....++..|.+++.+......+. ..+++|.|+.++.+ +++++...+...+.+++.++ ...+.+.+.|
T Consensus 215 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g 293 (529)
T 3tpo_A 215 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKG 293 (529)
T ss_dssp SSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTT
T ss_pred ccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC-CcHHHHHHHHHHHHHhhhhhhhhHHHHHhcc
Confidence 443 35668888999998765554443 46789999999975 56677777777778887665 4566777899
Q ss_pred chHHHHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-C
Q psy12638 194 QLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-D 266 (334)
Q Consensus 194 gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~ 266 (334)
+++.|+.++.+.+..+ ++.+++|++.+++.... + .++++.|+.++.+.+ .+... +++.++++++. +
T Consensus 294 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~i~~------~a~~aL~nl~~~~ 366 (529)
T 3tpo_A 294 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQK------EATWTMSNITAGR 366 (529)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHH------HHHHHHHHHHTSC
T ss_pred chHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCC-HHHHH------HHHHHHHHHhccc
Confidence 9999999987766654 47789999987765433 2 477888888876543 22221 36778899987 5
Q ss_pred cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCc--hhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 267 PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHA--SCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 267 ~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~--~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
++....+.+.|++|+|+.+|+ ..+.++...+++++..++.+. +....+++. +++..|++||++++
T Consensus 367 ~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~-g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 367 QDQIQQVVNHGLVPFLVGVLS--KADFKTQKAAAWAITNYTSGGTVEQIVYLVHC-GIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT-TCHHHHHHGGGCSC
T ss_pred HHHHHHHHhcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC-cCHHHHHHHhcCCC
Confidence 667778899999999999997 456789999999999998643 344556654 55559999998764
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.89 E-value=7.3e-22 Score=196.98 Aligned_cols=286 Identities=14% Similarity=0.123 Sum_probs=220.8
Q ss_pred cchhHHHHHHHhcc-cch-hhHHHhHhCCcchHHHhhccCCC-hhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHh
Q psy12638 45 KSKREGRQDSRKLS-VYH-VNKEQMANLNLIEKLPRILMIED-SNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSL 120 (334)
Q Consensus 45 ~~~~~A~~~L~~LS-i~~-enk~~m~~~g~I~~Lv~LL~~~~-~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~l 120 (334)
..|..|+..|.++. ... +++..+.+.|++|.|+++|.+++ +.++..|+.+|.|++.+ ++.+..+++.|+||+|+.+
T Consensus 89 ~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 168 (528)
T 4b8j_A 89 NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (528)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHH
Confidence 34558899998884 443 68899999999999999999987 89999999999999997 7999999999999999999
Q ss_pred ccC--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHH
Q psy12638 121 LEE--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLEL 197 (334)
Q Consensus 121 L~~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~ 197 (334)
|++ +..+..|+.+|.+|+.+ +.+|..+.+.|++|+|+.++...++..+...++..+.||+.+..+.......++++.
T Consensus 169 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~ 248 (528)
T 4b8j_A 169 LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPA 248 (528)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 964 46789999999999976 678999999999999999996556667777777888899877544444445678888
Q ss_pred HHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHH-----------------
Q psy12638 198 LMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTL----------------- 254 (334)
Q Consensus 198 Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~l----------------- 254 (334)
|+.++.+++..+ ++.++.+++.+.+.... + .+.++.|+.++...+ .+....+++++
T Consensus 249 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 327 (528)
T 4b8j_A 249 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS-PSVLIPALRTVGNIVTGDDAQTQCIIDH 327 (528)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC-hhHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 888876655444 35568888877654422 2 367777777765432 11111111111
Q ss_pred --------------------HHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC--ch
Q psy12638 255 --------------------EVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH--AS 311 (334)
Q Consensus 255 --------------------eav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~--~~ 311 (334)
+|+.++++++. +++....+.+.|++|.|+++|..+ +.++..+++.+++.++.+ ++
T Consensus 328 ~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~ 405 (528)
T 4b8j_A 328 QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHD 405 (528)
T ss_dssp THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHH
Confidence 67888999987 555666788899999999999853 778999999999999987 45
Q ss_pred hhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 312 CQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 312 ~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
.+..+.. .+++..|+++|++.+
T Consensus 406 ~~~~l~~-~~~i~~L~~lL~~~d 427 (528)
T 4b8j_A 406 QIKYLVS-EGCIKPLCDLLICPD 427 (528)
T ss_dssp HHHHHHH-TTCHHHHHHGGGCSC
T ss_pred HHHHHHH-CCCHHHHHHHHcCCC
Confidence 6666665 456669999998754
No 16
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=5e-22 Score=208.49 Aligned_cols=281 Identities=15% Similarity=0.142 Sum_probs=229.9
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE 123 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~ 123 (334)
..|+.|+.+|.+||...+|+..+.+.|+|+.|+++|.++++.++..|+.+|.||+.+ ++.+..+++.|+||.|+++|++
T Consensus 208 ~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~ 287 (780)
T 2z6g_A 208 ETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287 (780)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc
Confidence 467799999999999999999999999999999999999999999999999999987 5888888899999999999975
Q ss_pred C--chHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638 124 G--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI 200 (334)
Q Consensus 124 ~--~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~ 200 (334)
+ ..+..++..|.+|+. ++++|..|.+.|+++.|++++.++..+.....+..++.||+.+++++..+++.|+++.|+.
T Consensus 288 ~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~ 367 (780)
T 2z6g_A 288 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 367 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGG
T ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHH
Confidence 4 457778889999986 5889999999999999999998755444444556888999999999999999999999999
Q ss_pred HHhcCChHH---HHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhhC
Q psy12638 201 QAFTQKNIL---LLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCKN 276 (334)
Q Consensus 201 ~l~~~~d~~---~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~~ 276 (334)
++.+++... ++.++++++........+.+.++.|++++...+ .+ +.+ .++.+++.++.. ++.+..+.+.
T Consensus 368 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d-~~-vr~-----~A~~aL~~L~~~~~~~~~~i~~~ 440 (780)
T 2z6g_A 368 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-IN-VVT-----CAAGILSNLTCNNYKNKMMVCQV 440 (780)
T ss_dssp GTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC-HH-HHH-----HHHHHHHHHTSSCHHHHHHHHTT
T ss_pred HHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCC-HH-HHH-----HHHHHHHHHHhCCHHHHHHHHHC
Confidence 987765544 366789999876543335678899999886433 22 222 267888999885 4677788999
Q ss_pred CchHHHHHHhccccCCchHHHHHHHHHHHHHcCchh----hHHHhhcCCcHHHHHHhhhcC
Q psy12638 277 STVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC----QNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~----~~~i~~~~~i~~~Li~LL~d~ 333 (334)
|++|.|+++|....+.+++...++.+++.++.+.+. +..+....+++ .|+++|++.
T Consensus 441 g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~-~L~~lL~~~ 500 (780)
T 2z6g_A 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP-VVVKLLHPP 500 (780)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHH-HHHHTTSTT
T ss_pred CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHH-HHHHHhcCC
Confidence 999999999986444458899999999999865432 44566555555 999999864
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.89 E-value=3.7e-22 Score=199.66 Aligned_cols=281 Identities=14% Similarity=0.139 Sum_probs=213.4
Q ss_pred cchhHHHHHHHhcccchhh--HHHhHhCCcchHHHhhccC-CChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHh
Q psy12638 45 KSKREGRQDSRKLSVYHVN--KEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSL 120 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~en--k~~m~~~g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~l 120 (334)
..|.+|+..++||.....| .+.+.+.|+||+|+++|.+ ++++++..|+.+|.|++. +++++..+++.|+||.|+++
T Consensus 72 ~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~l 151 (510)
T 3ul1_B 72 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL 151 (510)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH
Confidence 3355888888886443333 5789999999999999975 567899999999999976 57999999999999999999
Q ss_pred ccCC--chHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCc----hHHHHHHHHHHHccCcchHHHHH-hc
Q psy12638 121 LEEG--KHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDE----TDNVLVALCINLALNSRNAELML-KN 192 (334)
Q Consensus 121 L~~~--~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~----~~~~~~~ll~nLs~~~~n~~~i~-~~ 192 (334)
|+++ +.++.|+.+|.|||.+ ++.|..+.+.|++++|+.++.....+. ....+...+.|++.+......+. ..
T Consensus 152 L~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~ 231 (510)
T 3ul1_B 152 LASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE 231 (510)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 9654 6799999999999987 688999999999999999997533222 12234456678877665443333 34
Q ss_pred CchHHHHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-
Q psy12638 193 RQLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS- 265 (334)
Q Consensus 193 ~gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~- 265 (334)
++++.|+.++.+..+.+ +..++++++.++..... + .+.++.|+.++...+ .+... .++.++|+++.
T Consensus 232 ~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~------~al~aL~nl~~~ 304 (510)
T 3ul1_B 232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT------PALRAIGNIVTG 304 (510)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHH------HHHHHHHHHTTS
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC-hhhhh------HHHHHHHHhhcC
Confidence 68888888877665554 35578899988766544 2 478899999886544 22222 25677899877
Q ss_pred CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 266 DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 266 ~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
++.....+.+.|++|.|+.+|+ ..++++.-.++.++..++.+++.....+.+.+++..|+++|++.+
T Consensus 305 ~~~~~~~i~~~g~l~~L~~LL~--~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~ 371 (510)
T 3ul1_B 305 TDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 371 (510)
T ss_dssp CHHHHHHHHHTTGGGGCC-CTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred CHHHHHHHhhccchHHHHHHhc--CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence 5566778899999999999997 455689999999999999877754444445677779999998764
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.88 E-value=7.2e-22 Score=195.62 Aligned_cols=275 Identities=13% Similarity=0.095 Sum_probs=221.6
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhC-CcchHHHhhccCC-ChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANL-NLIEKLPRILMIE-DSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~-g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
..|..|+..|.+++...+++..+... |++++|+++|.++ +.+++..|+.+|.|||.+++++..|++.|+||.|+++|+
T Consensus 32 ~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~ 111 (529)
T 1jdh_A 32 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG 111 (529)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc
Confidence 45779999999999999999888875 9999999999765 889999999999999999999999999999999999996
Q ss_pred C--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHHH
Q psy12638 123 E--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLELL 198 (334)
Q Consensus 123 ~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~L 198 (334)
+ +..+..|+.+|.+|+.+ +..+..+.+.|++|.|++++.+ ++.++...+...+.|++. +++++..+.+.||++.|
T Consensus 112 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L 190 (529)
T 1jdh_A 112 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 4 45789999999999987 5788999999999999999985 455555545567789976 57889999999999999
Q ss_pred HHHHhcCChHH----HHHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHH
Q psy12638 199 MIQAFTQKNIL----LLKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEH 272 (334)
Q Consensus 199 v~~l~~~~d~~----~~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~ 272 (334)
+..+.++.+.. +..+++|++.++.++..+ .++++.|++++...+ .+.... ++.+++.++.+....
T Consensus 191 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~------a~~~L~~l~~~~~~~-- 261 (529)
T 1jdh_A 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQN------CLWTLRNLSDAATKQ-- 261 (529)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC-HHHHHH------HHHHHHHHHTTCTTC--
T ss_pred HHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC-hHHHHH------HHHHHHHHhcCChhh--
Confidence 99988765543 366799999987776664 478888988876542 233222 456678888754322
Q ss_pred hhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhhc
Q psy12638 273 FCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLND 332 (334)
Q Consensus 273 l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~d 332 (334)
....|++|.|+++++ .+|+++...++.+++.++.+++ .++.+... +.+..|+++|++
T Consensus 262 ~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~ 319 (529)
T 1jdh_A 262 EGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLR 319 (529)
T ss_dssp SCCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHc
Confidence 123478999999996 5677899999999999998765 66666654 555599999975
No 19
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.88 E-value=2.6e-21 Score=194.21 Aligned_cols=279 Identities=15% Similarity=0.144 Sum_probs=212.5
Q ss_pred hhHHHHHHHhc-ccchh-hHHHhHhCCcchHHHhhccC-CChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638 47 KREGRQDSRKL-SVYHV-NKEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 47 ~~~A~~~L~~L-Si~~e-nk~~m~~~g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
+.+|+..++|+ |.... ..+.+.+.|+||+|+++|.+ ++++++..|+.+|.|++.+ ++.+..+++.|+||.|+.+|+
T Consensus 93 q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~ 172 (529)
T 3tpo_A 93 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 172 (529)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 44788888775 43322 46789999999999999964 5688999999999999986 588899999999999999996
Q ss_pred C--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCc----hHHHHHHHHHHHccCcchHHHHH-hcCc
Q psy12638 123 E--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDE----TDNVLVALCINLALNSRNAELML-KNRQ 194 (334)
Q Consensus 123 ~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~----~~~~~~~ll~nLs~~~~n~~~i~-~~~g 194 (334)
+ ++.++.|+.+|.|||.+ +++|..+.+.|++++|+.+|.....+. ....+...+.|++.+......+. ..++
T Consensus 173 s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 252 (529)
T 3tpo_A 173 SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 252 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhH
Confidence 4 46799999999999986 689999999999999999997543222 12234456678877665543333 3468
Q ss_pred hHHHHHHHhcCChHHH---HHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-Cc
Q psy12638 195 LELLMIQAFTQKNILL---LKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DP 267 (334)
Q Consensus 195 l~~Lv~~l~~~~d~~~---~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~ 267 (334)
+|.|+.++.++.+.+. ..++++++.++..... + .++++.|+.++...+ ..... .++.++|+++. ++
T Consensus 253 lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~------~a~~aL~nl~~~~~ 325 (529)
T 3tpo_A 253 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT------PALRAIGNIVTGTD 325 (529)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHH------HHHHHHHHHTTSCH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC-hhHHH------HHHHHHHHHHccch
Confidence 8999988776665543 5568889988765544 2 578899999886543 22222 25677899987 56
Q ss_pred chHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 268 ISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 268 ~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
.....+.+.|++|.|+.+|+ ..++++..++++++..++.+++.....+.+.+++..|+++|++.+
T Consensus 326 ~~~~~i~~~g~l~~L~~LL~--~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~ 390 (529)
T 3tpo_A 326 EQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 390 (529)
T ss_dssp HHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHhhcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC
Confidence 66778899999999999998 455689999999999999877754444445667769999998764
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=3.3e-21 Score=197.58 Aligned_cols=283 Identities=14% Similarity=0.091 Sum_probs=226.1
Q ss_pred cchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc
Q psy12638 45 KSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
..|..|+..|.+++.. ++++..+.+.|+++.|+++|.+++.+++..++.+|.||+. ++++|..+++.|++|.|+++|+
T Consensus 113 ~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~ 192 (644)
T 2z6h_A 113 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192 (644)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHH
Confidence 4577999999999976 5688888899999999999999999999999999999997 6899999999999999999996
Q ss_pred CC---chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhcc-------------------------------------
Q psy12638 123 EG---KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLV------------------------------------- 162 (334)
Q Consensus 123 ~~---~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~------------------------------------- 162 (334)
++ ..+..++.+|.+||.++++|..+.+.|+++.|++++.+
T Consensus 193 ~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL 272 (644)
T 2z6h_A 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 272 (644)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHH
Confidence 54 34677999999999999999999998888887776643
Q ss_pred -CCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCC--hHH---HHHHHHHHhcCCCch---hh-h--hh
Q psy12638 163 -EQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQK--NIL---LLKVIRNMSIHSNVK---HY-F--VD 229 (334)
Q Consensus 163 -~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~--d~~---~~k~l~nLa~~~~~~---~~-f--~~ 229 (334)
.++.++...+..++.||+.+ +++++.+.+.|+++.|+..+.+.. +.+ ++.+++|++.+.+.. +. + .+
T Consensus 273 ~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~ 352 (644)
T 2z6h_A 273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHcc
Confidence 13344545555667788664 477889999999999999998643 343 477899999865432 22 2 47
Q ss_pred hHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcccc-------------------
Q psy12638 230 YIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQ------------------- 290 (334)
Q Consensus 230 ~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~------------------- 290 (334)
.++.|++++...+..+... +++.++++++..+..+..+.+.|++|.|+++|+...
T Consensus 353 ~l~~L~~lL~~~~~~~v~~------~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~ 426 (644)
T 2z6h_A 353 GLPVVVKLLHPPSHWPLIK------ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426 (644)
T ss_dssp HHHHHHHTTSTTCCHHHHH------HHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred ChHHHHHHhCccCchHHHH------HHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence 8999999886544223322 256777999998888889999999999999998631
Q ss_pred -CCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 291 -EDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 291 -~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
.+++++.+++.++..|+.++..+..+...+.++ .|+++|++.+
T Consensus 427 ~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~-~Lv~lL~~~~ 470 (644)
T 2z6h_A 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP-LFVQLLYSPI 470 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHH-HHHHHTTCSC
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHH-HHHHHHcCCC
Confidence 346788889999999999998887776655555 9999998864
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.87 E-value=1e-20 Score=188.75 Aligned_cols=287 Identities=14% Similarity=0.104 Sum_probs=226.8
Q ss_pred cchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhc-
Q psy12638 45 KSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLL- 121 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL- 121 (334)
..|..|+.+|.+++.. ++++..+.+.|++|+|+++|.+++..++..|+.+|.||+.+ +++|..+.+.|++|+|+.+|
T Consensus 133 ~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~ 212 (528)
T 4b8j_A 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN 212 (528)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh
Confidence 3466899999999985 78999999999999999999999999999999999999987 68899999999999999999
Q ss_pred c--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcch-HHHHHhcCchHHH
Q psy12638 122 E--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRN-AELMLKNRQLELL 198 (334)
Q Consensus 122 ~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n-~~~i~~~~gl~~L 198 (334)
. ++..+..|+.+|.+|+............+++|.|+.++.+ ++..+...++..+.||+..+.. .+.+.+.|+++.|
T Consensus 213 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~L 291 (528)
T 4b8j_A 213 EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 291 (528)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHH
Confidence 3 3457888999999999986555666678999999999975 5667777777888899876655 4677788999999
Q ss_pred HHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHH------------------
Q psy12638 199 MIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTL------------------ 254 (334)
Q Consensus 199 v~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~l------------------ 254 (334)
+..+.++++.+ ++.++.|++.+++.... + .+.++.|+.++......+...++.+++
T Consensus 292 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~ 371 (528)
T 4b8j_A 292 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG 371 (528)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Confidence 99988776554 46678999987654332 2 467888888876541222222221111
Q ss_pred ------------------HHHHHHHHhcCC--cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchh--
Q psy12638 255 ------------------EVINFIGTAASD--PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC-- 312 (334)
Q Consensus 255 ------------------eav~~lg~la~~--~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~-- 312 (334)
+++.++++++.. ++....+++.|++++|+++|.. .|++++..++.++..++...+.
T Consensus 372 ~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~ 449 (528)
T 4b8j_A 372 IIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC--PDIRIVTVCLEGLENILKVGETDK 449 (528)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHhh
Confidence 678889999874 6777788899999999999984 5678999999999999865543
Q ss_pred ---------hHHHhhcCCcHHHHHHhhhcCC
Q psy12638 313 ---------QNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 313 ---------~~~i~~~~~i~~~Li~LL~d~n 334 (334)
...++.+.+..+.+.+|+++.|
T Consensus 450 ~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~ 480 (528)
T 4b8j_A 450 TLAAGDVNVFSQMIDEAEGLEKIENLQSHDN 480 (528)
T ss_dssp HHHTCSCCHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred hcccccccHHHHHHHHCCcHHHHHHHHcCCC
Confidence 2335566777778889887764
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.86 E-value=2.6e-20 Score=166.42 Aligned_cols=233 Identities=16% Similarity=0.182 Sum_probs=195.7
Q ss_pred CCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCC-hhhhh
Q psy12638 70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIE-DRVKA 145 (334)
Q Consensus 70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~-~~~r~ 145 (334)
.|.|+.|+++|.+++.+++..|+.+|.|++.+. +++..+++.|+||.|+++|++ +..+..|+.+|.+|+.+ ++++.
T Consensus 1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 378999999999999999999999999999865 699999999999999999964 46789999999999998 89999
Q ss_pred HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHHHhcCchHHHHHHHhcCChHH---HHHHHHHHhcCC
Q psy12638 146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELMLKNRQLELLMIQAFTQKNIL---LLKVIRNMSIHS 221 (334)
Q Consensus 146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~ 221 (334)
.+.+.|++|.|++++.+ +++.+...++.++.||+ .+++++..+.+.|+++.|++.+.+++..+ .+.+++|++.++
T Consensus 81 ~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999985 56777777878899998 77889999999999999999987766554 466799999876
Q ss_pred Cchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHH
Q psy12638 222 NVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVL 297 (334)
Q Consensus 222 ~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vl 297 (334)
+.... + .+.++.|+.++.+.+ .+. .+ .++.+++.++. +++..+.+.+.|++|.|+++++ .++.++.-
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~-~~v-~~-----~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~ 230 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTD-SEV-QK-----EAARALANIASGPTSAIKAIVDAGGVEVLQKLLT--STDSEVQK 230 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC-HHH-HH-----HHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG--CSCHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCC-HHH-HH-----HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC--CCcHHHHH
Confidence 65433 3 478999999886433 222 22 26777899988 6677788999999999999997 45668999
Q ss_pred HHHHHHHHHHcCchh
Q psy12638 298 QILYVFYQICRHASC 312 (334)
Q Consensus 298 qi~~~l~~l~~~~~~ 312 (334)
+++.+++.++.++..
T Consensus 231 ~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 231 EAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHcCCCc
Confidence 999999999976653
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.86 E-value=1.3e-20 Score=169.46 Aligned_cols=220 Identities=15% Similarity=0.164 Sum_probs=181.9
Q ss_pred CcchhHHHHHHHh-cccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhc
Q psy12638 44 PKSKREGRQDSRK-LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL 121 (334)
Q Consensus 44 ~~~~~~A~~~L~~-LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL 121 (334)
+..+..|...|.+ ++...+++..+.+.|+++.|+++|.+++++++..|+.+|.||+. +++++..+++.|++|.|+.+|
T Consensus 26 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL 105 (252)
T 4db8_A 26 MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105 (252)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 4556788999955 55577899999999999999999999999999999999999998 589999999999999999999
Q ss_pred cC--CchHHHHHHHHHHccCChhhh-hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHH
Q psy12638 122 EE--GKHQKIILQLLYHLSIEDRVK-AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLEL 197 (334)
Q Consensus 122 ~~--~~~~~~al~~L~~LS~~~~~r-~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~ 197 (334)
++ +..+..|+.+|.+|+.+++.+ ..+.+.|++|.|+++|.+ ++..+...++..+.||+. ++.+.+.+.+.|+++.
T Consensus 106 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 184 (252)
T 4db8_A 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 184 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHH
Confidence 64 467899999999999999888 899999999999999975 566777788888999987 4567778888889998
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhC
Q psy12638 198 LMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKN 276 (334)
Q Consensus 198 Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~ 276 (334)
|++.+.+++.. . .+ .++.++++++. +++....+.+.
T Consensus 185 L~~ll~~~~~~-------------------------------------v-~~-----~a~~~L~~l~~~~~~~~~~~~~~ 221 (252)
T 4db8_A 185 LVQLLSSPNEQ-------------------------------------I-LQ-----EALWALSNIASGGNEQKQAVKEA 221 (252)
T ss_dssp HHHGGGCSSHH-------------------------------------H-HH-----HHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHCCCCHH-------------------------------------H-HH-----HHHHHHHHHhcCCHHHHHHHHHC
Confidence 88775432111 1 11 25667788875 56677788999
Q ss_pred CchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638 277 STVDLLINLLKEMQEDDEIVLQILYVFYQICRH 309 (334)
Q Consensus 277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~ 309 (334)
|++|.|+++++. .++++.-+++.++..++.|
T Consensus 222 g~i~~L~~ll~~--~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 222 GALEKLEQLQSH--ENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp THHHHHHTTTTC--SSSHHHHTHHHHHHTTC--
T ss_pred CcHHHHHHHhCC--CCHHHHHHHHHHHHHHhcC
Confidence 999999999984 4668888889999888654
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.85 E-value=1.2e-19 Score=181.31 Aligned_cols=285 Identities=11% Similarity=0.110 Sum_probs=219.8
Q ss_pred cchhHHHHHHHhcccc--hhhHHHhHhCCcchHHHhhccCC-ChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHh
Q psy12638 45 KSKREGRQDSRKLSVY--HVNKEQMANLNLIEKLPRILMIE-DSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSL 120 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~--~enk~~m~~~g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~l 120 (334)
..|..|+..|.++... ..++..+.+.|++|.|+++|.++ ++.++..|+.+|.|++.+ ++.+..+++.|+||.|+.+
T Consensus 102 ~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 181 (530)
T 1wa5_B 102 QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 181 (530)
T ss_dssp HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHH
Confidence 3466899999887442 45778899999999999999997 899999999999999986 6899999999999999999
Q ss_pred cc--CCchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc-chHHHHHhcCchH
Q psy12638 121 LE--EGKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS-RNAELMLKNRQLE 196 (334)
Q Consensus 121 L~--~~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~-~n~~~i~~~~gl~ 196 (334)
|+ ++..++.|+.+|.+|+.+ ++.|..+...|++|+|++++.+ ++..+...++..+.||+.+. .........++++
T Consensus 182 L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 260 (530)
T 1wa5_B 182 LYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP 260 (530)
T ss_dssp HHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHH
Confidence 95 556899999999999987 6889999999999999999986 56677777778888998765 4444555568999
Q ss_pred HHHHHHhcCChHH---HHHHHHHHhcCCCch-hhh--hhhHHHHHHHhhcCCccchhHH---hhc---------------
Q psy12638 197 LLMIQAFTQKNIL---LLKVIRNMSIHSNVK-HYF--VDYIGDIANCVQKEKDENIKLE---CLG--------------- 252 (334)
Q Consensus 197 ~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~-~~f--~~~i~~L~~~l~~~~~~~~~ve---~Lg--------------- 252 (334)
.|+.++.++++.+ ++.++.+++.+.+.. +.+ .+.++.|+.++...+ .+.... +|+
T Consensus 261 ~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~ 339 (530)
T 1wa5_B 261 TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGNIVTGNDLQTQVVIN 339 (530)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC-hhhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999876655443 366788999775443 222 367777777765432 111111 111
Q ss_pred --HH----------------HHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC--c-
Q psy12638 253 --TL----------------EVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH--A- 310 (334)
Q Consensus 253 --~l----------------eav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~--~- 310 (334)
.+ +|+.+++.++. +++..+.+.+.|++|.|+++|+. .+.++...++.+++.++.+ +
T Consensus 340 ~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~ 417 (530)
T 1wa5_B 340 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQR 417 (530)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTC
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCCc
Confidence 11 68889999987 56666777889999999999974 5678999999999999864 2
Q ss_pred -hhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 311 -SCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 311 -~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
+..+.+... +++..|+++|++.+
T Consensus 418 ~~~~~~l~~~-~~l~~L~~ll~~~~ 441 (530)
T 1wa5_B 418 PDIIRYLVSQ-GCIKPLCDLLEIAD 441 (530)
T ss_dssp THHHHHHHHT-TCHHHHHHHTTTCC
T ss_pred HHHHHHHHHC-CCHHHHHHHHhCCC
Confidence 455566654 55559999998764
No 25
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=6.3e-21 Score=172.59 Aligned_cols=174 Identities=16% Similarity=0.218 Sum_probs=146.2
Q ss_pred chhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc-
Q psy12638 46 SKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE- 122 (334)
Q Consensus 46 ~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~- 122 (334)
-|..|+.++.+|+. .++||..+.+.|+||+|+++|.++++++++.|+.+|.|||.+ +++|..|++.|+||+|+++|+
T Consensus 26 ~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~ 105 (233)
T 3tt9_A 26 RISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ 105 (233)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHcc
Confidence 35578899999995 678999999999999999999999999999999999999985 799999999999999999995
Q ss_pred --CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhc---cCC------------CCchHHHHHHHHHHHcc-Ccc
Q psy12638 123 --EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLL---VEQ------------DDETDNVLVALCINLAL-NSR 184 (334)
Q Consensus 123 --~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~---~~~------------~~~~~~~~~~ll~nLs~-~~~ 184 (334)
+++.++.|+++|++||..+++|..|.+ ++||+|++++. ++. +.++...+...+.|||. +++
T Consensus 106 ~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~ 184 (233)
T 3tt9_A 106 TRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHH
Confidence 346789999999999999999999987 58999999774 121 33555667788899976 669
Q ss_pred hHHHHHhcC-chHHHHHHHhcC------ChH---HHHHHHHHHhcC
Q psy12638 185 NAELMLKNR-QLELLMIQAFTQ------KNI---LLLKVIRNMSIH 220 (334)
Q Consensus 185 n~~~i~~~~-gl~~Lv~~l~~~------~d~---~~~k~l~nLa~~ 220 (334)
+++.|.+.+ ++++|+..+..+ ++. -.+.++||||..
T Consensus 185 ~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 185 GRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999765 469999997753 122 257789999875
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.85 E-value=3.3e-19 Score=172.74 Aligned_cols=278 Identities=13% Similarity=0.124 Sum_probs=219.9
Q ss_pred cchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638 45 KSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
..|..|+.+|.+++.. ++++..+.+.|++|.|++++.++++++++.|+.+|.|++.+ ++.|..+++.|++|.|+++++
T Consensus 80 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~ 159 (450)
T 2jdq_A 80 TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS 159 (450)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc
Confidence 4467899999999874 67888889999999999999999999999999999999998 589999999999999999996
Q ss_pred C---CchHHHHHHHHHHccCCh--hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchH
Q psy12638 123 E---GKHQKIILQLLYHLSIED--RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLE 196 (334)
Q Consensus 123 ~---~~~~~~al~~L~~LS~~~--~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~ 196 (334)
+ +..+..|+.+|.+|+.+. ..+..+. .+++|.|++++.+ +++.+...+...+.|++.+ +++...+.+.|+++
T Consensus 160 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 237 (450)
T 2jdq_A 160 KQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237 (450)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHH
Confidence 3 357889999999999764 3333333 7899999999975 5667767777788899875 46777888889999
Q ss_pred HHHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-Ccch
Q psy12638 197 LLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPIS 269 (334)
Q Consensus 197 ~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~ 269 (334)
.|+..+.+.+..+ ++.++.+++.+.+.... + .+.++.|+.++...+ ..+.. +++.++++++. +++.
T Consensus 238 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~vr~-----~a~~~L~~l~~~~~~~ 310 (450)
T 2jdq_A 238 RLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK--ESIKK-----EACWTISNITAGNRAQ 310 (450)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS--HHHHH-----HHHHHHHHHTTSCHHH
T ss_pred HHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC--HHHHH-----HHHHHHHHHHcCCHHH
Confidence 9999887555443 46678999987665433 2 378888988886532 22222 36788899997 5666
Q ss_pred HHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC--chhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 270 AEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH--ASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 270 ~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~--~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
.+.+.+.|++|.|+++|+. .+.++...++.+++.++.+ ++..+.++.. +++..|+++|++++
T Consensus 311 ~~~~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~ 374 (450)
T 2jdq_A 311 IQTVIDANIFPALISILQT--AEFRTRKEAAWAITNATSGGSAEQIKYLVEL-GCIKPLCDLLTVMD 374 (450)
T ss_dssp HHHHHHTTHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-TCHHHHHHGGGSSC
T ss_pred HHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC-CCHHHHHHHhcCCC
Confidence 6778888999999999984 4668999999999999974 3456666654 55559999998763
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.83 E-value=1.4e-19 Score=189.95 Aligned_cols=284 Identities=14% Similarity=0.088 Sum_probs=222.1
Q ss_pred CcchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhc
Q psy12638 44 PKSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL 121 (334)
Q Consensus 44 ~~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL 121 (334)
+..|..|+.+|.+++.. ++++..+.+.|+++.|++++.+++..++..++.+|.+|+. ++++|..+++.|++|.|+.++
T Consensus 248 ~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL 327 (780)
T 2z6g_A 248 DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 327 (780)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH
Confidence 35577999999999986 5678888899999999999999999999999999999997 479999999999999999999
Q ss_pred cCCc---hHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccC-----------------------------------
Q psy12638 122 EEGK---HQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVE----------------------------------- 163 (334)
Q Consensus 122 ~~~~---~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~----------------------------------- 163 (334)
+++. .+..++.+|.+||..+++|..+.+.|+++.|+.++.+.
T Consensus 328 ~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~l 407 (780)
T 2z6g_A 328 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 407 (780)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHH
Confidence 6442 46678999999999988999998888777776665431
Q ss_pred ---CCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCCh--HH---HHHHHHHHhcCCCchh----hh--h
Q psy12638 164 ---QDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQKN--IL---LLKVIRNMSIHSNVKH----YF--V 228 (334)
Q Consensus 164 ---~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~d--~~---~~k~l~nLa~~~~~~~----~f--~ 228 (334)
++..+...++.++.||+.. +++++.+.+.||++.|++.+.+..+ .+ ++.+++|++...+..+ .+ .
T Consensus 408 L~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~ 487 (780)
T 2z6g_A 408 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH 487 (780)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHc
Confidence 3344444555667788665 4678889999999999999986432 33 4778999988654421 22 4
Q ss_pred hhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcccc------------------
Q psy12638 229 DYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQ------------------ 290 (334)
Q Consensus 229 ~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~------------------ 290 (334)
++++.|++++...+..+... +++.+|++++..+..+..+.+.|++|.|+++|+.+.
T Consensus 488 ~~l~~L~~lL~~~~~~~v~~------~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~ 561 (780)
T 2z6g_A 488 YGLPVVVKLLHPPSHWPLIK------ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 561 (780)
T ss_dssp TCHHHHHHTTSTTCCHHHHH------HHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCST
T ss_pred CCHHHHHHHhcCCChHHHHH------HHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhc
Confidence 77889999886554222222 266778999998888888999999999999997532
Q ss_pred --CCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 291 --EDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 291 --~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
.+++++..++.+++.++.++..+..+...+.++ .|+++|++.+
T Consensus 562 ~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~-~Lv~lL~~~~ 606 (780)
T 2z6g_A 562 GVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP-LFVQLLYSPI 606 (780)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHH-HHHHGGGCSC
T ss_pred ccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHH-HHHHHHcCCC
Confidence 235677788999999999888887776655555 9999999864
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=5.3e-20 Score=166.54 Aligned_cols=207 Identities=19% Similarity=0.221 Sum_probs=160.1
Q ss_pred cchHHHhhccCCCh--hHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccC-Chhhhh
Q psy12638 72 LIEKLPRILMIEDS--NLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSI-EDRVKA 145 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~--~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~-~~~~r~ 145 (334)
.+|+++++|.++++ +++..|+..|.||++ ++++|..+++.|+||+||++|+ +++.|+.|+..|.|||. ++++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999998 899999999999996 6799999999999999999996 45679999999999998 589999
Q ss_pred HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCC---
Q psy12638 146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN--- 222 (334)
Q Consensus 146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~--- 222 (334)
.|++.|+||+|+++|.+.++.++++.+..+++|||.+++++..|.++ |+++|++++.. ..+.+..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~-----------p~sG~~~~~~ 156 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIII-----------PFSGWPEGDY 156 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCH-----------HHHCCCGGGC
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhc-----------cccCCccccc
Confidence 99999999999999985456777777878999999999999999985 89999876431 0011100
Q ss_pred chhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhC-CchHHHHHHhccc----cCCchHH
Q psy12638 223 VKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKN-STVDLLINLLKEM----QEDDEIV 296 (334)
Q Consensus 223 ~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~-g~I~~Lv~LL~~~----~~dde~v 296 (334)
.+.. .....+.+. .|+.+|.+++. +++.++.+.+. |+|+.|+.+++.. .-|+..+
T Consensus 157 ~~~~-------------~~~~~~v~~------na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~ 217 (233)
T 3tt9_A 157 PKAN-------------GLLDFDIFY------NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKAT 217 (233)
T ss_dssp CCCC-------------TTCCHHHHH------HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHH
T ss_pred cccc-------------ccchHHHHH------HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHH
Confidence 0000 000111211 25667799988 56889989875 7899999999974 2255556
Q ss_pred HHHHHHHHHHHcC
Q psy12638 297 LQILYVFYQICRH 309 (334)
Q Consensus 297 lqi~~~l~~l~~~ 309 (334)
--++-++..|+.+
T Consensus 218 En~v~~L~nLs~~ 230 (233)
T 3tt9_A 218 ENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhh
Confidence 5567777777643
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.82 E-value=1.9e-18 Score=172.57 Aligned_cols=285 Identities=14% Similarity=0.131 Sum_probs=220.4
Q ss_pred chhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC
Q psy12638 46 SKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE 123 (334)
Q Consensus 46 ~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~ 123 (334)
-|..|+.+|.+++.. ++++..+.+.|+++.|+++|.+++.+++..|+.+|.||+.+ ++.+..+++.|++|+|+.++.+
T Consensus 147 v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 226 (530)
T 1wa5_B 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 226 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc
Confidence 467899999999974 67889999999999999999999999999999999999998 6899999999999999999964
Q ss_pred --CchHHHHHHHHHHccCCh-hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHH
Q psy12638 124 --GKHQKIILQLLYHLSIED-RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLM 199 (334)
Q Consensus 124 --~~~~~~al~~L~~LS~~~-~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv 199 (334)
+..+..|+.+|.+|+... .........+++|.|+.++.+ +++.+...++..+.||+.. +...+.+.+.|+++.|+
T Consensus 227 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv 305 (530)
T 1wa5_B 227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305 (530)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence 457888999999999875 555666678999999999975 5667777777888899865 45677888889999999
Q ss_pred HHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhc---------------------
Q psy12638 200 IQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLG--------------------- 252 (334)
Q Consensus 200 ~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg--------------------- 252 (334)
..+.+.+..+ ++.++.|++.+++.... + .++++.|+.++...+ .+...++++
T Consensus 306 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~ 384 (530)
T 1wa5_B 306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANL 384 (530)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred HHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 9987655443 46778999987654322 2 367777777765432 111111111
Q ss_pred ------HH---------HHHHHHHHhcC--Cc--chHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhh
Q psy12638 253 ------TL---------EVINFIGTAAS--DP--ISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQ 313 (334)
Q Consensus 253 ------~l---------eav~~lg~la~--~~--~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~ 313 (334)
.+ +++.+++.++. .+ +..+.+.+.|++|.|+++|.. .|.++...++.++..++...+..
T Consensus 385 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~aL~~l~~~~~~~ 462 (530)
T 1wa5_B 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI--ADNRIIEVTLDALENILKMGEAD 462 (530)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhhhh
Confidence 11 67888999976 34 666778899999999999984 46788888999999998654421
Q ss_pred -----------HHHhhcCCcHHHHHHhhhcCC
Q psy12638 314 -----------NYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 314 -----------~~i~~~~~i~~~Li~LL~d~n 334 (334)
...+.+.+..+.|.+|+++.|
T Consensus 463 ~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~ 494 (530)
T 1wa5_B 463 KEARGLNINENADFIEKAGGMEKIFNCQQNEN 494 (530)
T ss_dssp HHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC
T ss_pred hhcccccccHHHHHHHHcCcHHHHHHHHcCCC
Confidence 123555677779999988765
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.82 E-value=6.3e-19 Score=158.46 Aligned_cols=217 Identities=16% Similarity=0.189 Sum_probs=177.9
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhc-CChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccC-ChhhhhH
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLS-FDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSI-EDRVKAM 146 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS-~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~-~~~~r~~ 146 (334)
...+.++++|.+++.+++..|+..|.++. .+++.+..+++.|+||.|+++|++ +..+..|+.+|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45788999999999999999999997754 467999999999999999999964 4678899999999998 6899999
Q ss_pred hhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchH-HHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchh
Q psy12638 147 FAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNA-ELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKH 225 (334)
Q Consensus 147 i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~-~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~ 225 (334)
+.+.|++|.|+++|.+ +++.+...++..+.|++.++.++ ..+.+.|+++.|++.+.+++..
T Consensus 92 i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~----------------- 153 (252)
T 4db8_A 92 VIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ----------------- 153 (252)
T ss_dssp HHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH-----------------
T ss_pred HHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHH-----------------
Confidence 9999999999999986 56777777888899999999988 8888999999888775432111
Q ss_pred hhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHH
Q psy12638 226 YFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFY 304 (334)
Q Consensus 226 ~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~ 304 (334)
. .+ .++.++++++. +++....+.+.|++|.|+++|+. .++++...++.+++
T Consensus 154 --------------------v-~~-----~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~ 205 (252)
T 4db8_A 154 --------------------I-LQ-----EALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALS 205 (252)
T ss_dssp --------------------H-HH-----HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC--SSHHHHHHHHHHHH
T ss_pred --------------------H-HH-----HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC--CCHHHHHHHHHHHH
Confidence 1 11 25677788887 45666788889999999999984 46789999999999
Q ss_pred HHHcCch-hhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 305 QICRHAS-CQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 305 ~l~~~~~-~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
.++.+++ .++.+. +.+++..|+++|++.+
T Consensus 206 ~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~ 235 (252)
T 4db8_A 206 NIASGGNEQKQAVK-EAGALEKLEQLQSHEN 235 (252)
T ss_dssp HHTTSCHHHHHHHH-HTTHHHHHHTTTTCSS
T ss_pred HHhcCCHHHHHHHH-HCCcHHHHHHHhCCCC
Confidence 9997665 554555 4567779999998864
No 31
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.81 E-value=1.9e-18 Score=167.33 Aligned_cols=279 Identities=14% Similarity=0.146 Sum_probs=214.4
Q ss_pred cchhHHHHHHHhccc--chhhHHHhHhC-CcchHHHhhccCC-ChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHH
Q psy12638 45 KSKREGRQDSRKLSV--YHVNKEQMANL-NLIEKLPRILMIE-DSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVS 119 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi--~~enk~~m~~~-g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~ 119 (334)
..|..|+..|.++.. .......+.+. |++|.|++++.++ +..++..|+.+|.|++.+ ++.+..+++.|++|.|++
T Consensus 35 ~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 114 (450)
T 2jdq_A 35 EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE 114 (450)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHH
Confidence 346789999988632 22334556777 9999999999998 899999999999999985 688888999999999999
Q ss_pred hccC--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc--chHHHHHhcCc
Q psy12638 120 LLEE--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS--RNAELMLKNRQ 194 (334)
Q Consensus 120 lL~~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~--~n~~~i~~~~g 194 (334)
+|++ +..++.|+.+|.+++.+ ++.|..+.+.|++|.|++++.+.++..+...++..+.|++.+. .....+. .++
T Consensus 115 lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~ 193 (450)
T 2jdq_A 115 LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPC 193 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGG
T ss_pred HHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHH
Confidence 9964 46799999999999987 4789999999999999999985456777777778888998653 3333333 579
Q ss_pred hHHHHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-c
Q psy12638 195 LELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-P 267 (334)
Q Consensus 195 l~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~ 267 (334)
++.|+..+.++++.+ +..++++++.+.+.... + .+.++.|++++...+ .+. .+ .++.+++.++.. +
T Consensus 194 l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v-~~-----~a~~~L~~l~~~~~ 266 (450)
T 2jdq_A 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND-YKV-VS-----PALRAVGNIVTGDD 266 (450)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC-HHH-HH-----HHHHHHHHHTTSCH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc-hhH-HH-----HHHHHHHHHhhCCh
Confidence 999999877655443 35678999987644333 2 478899999886433 122 11 266788999885 4
Q ss_pred chHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 268 ISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 268 ~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
+..+.+.+.|++|.|+++|+. .+.++...++.+++.++.+.+ ..+.++.. +++..|+++|++.+
T Consensus 267 ~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~~l~~~~ 331 (450)
T 2jdq_A 267 IQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVIDA-NIFPALISILQTAE 331 (450)
T ss_dssp HHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHHHHSC
T ss_pred HHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHhcCC
Confidence 455567888999999999985 467888899999999997544 55555654 56669999998753
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.80 E-value=1.9e-18 Score=154.20 Aligned_cols=214 Identities=14% Similarity=0.182 Sum_probs=176.5
Q ss_pred cchhHHHHHHHhcccch-hhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638 45 KSKREGRQDSRKLSVYH-VNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~-enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
..|..|+..|.+++... +++..+.+.|+++.|++++.+++.+++..|+.+|.||+.+ ++++..+++.|++|.|+.+|+
T Consensus 17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~ 96 (252)
T 4hxt_A 17 ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 96 (252)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc
Confidence 45678999999998654 5999999999999999999999999999999999999998 899999999999999999996
Q ss_pred C--CchHHHHHHHHHHcc-CChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHHH
Q psy12638 123 E--GKHQKIILQLLYHLS-IEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLELL 198 (334)
Q Consensus 123 ~--~~~~~~al~~L~~LS-~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~L 198 (334)
+ +..+..|+.+|.+|+ .+++++..+.+.|++|.|++++.+ +++.+...++..+.|++. ++.+.+.+.+.|+++.|
T Consensus 97 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 175 (252)
T 4hxt_A 97 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVL 175 (252)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHH
Confidence 4 467899999999999 678999999999999999999985 567777788888999987 45566888899999999
Q ss_pred HHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC
Q psy12638 199 MIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD 266 (334)
Q Consensus 199 v~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~ 266 (334)
++.+.+.++.+ ++.++.|++.+++.... + .++++.|++++...+ .+.. + .|+.++++++..
T Consensus 176 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~-~-----~a~~~L~~l~~~ 242 (252)
T 4hxt_A 176 VKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD-SEVQ-K-----EAQRALENIKSG 242 (252)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC-HHHH-H-----HHHHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc-HHHH-H-----HHHHHHHHHHcC
Confidence 99987665544 46679999986554333 3 478888888876443 2222 2 256677887764
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.79 E-value=5.3e-18 Score=148.44 Aligned_cols=195 Identities=16% Similarity=0.171 Sum_probs=159.4
Q ss_pred hCCcchHHHhhccCCChhHHHHHHHHHHhhc-CChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccC-Chhhh
Q psy12638 69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLS-FDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSI-EDRVK 144 (334)
Q Consensus 69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS-~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~-~~~~r 144 (334)
..|..++|+++|.+++.+++..|+.+|.||+ .+++.+..+++.|+||.|+++|++ +..+..|+.+|.+|+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 4578899999999999999999999999999 467999999999999999999964 4678999999999995 67899
Q ss_pred hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCc
Q psy12638 145 AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNV 223 (334)
Q Consensus 145 ~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~ 223 (334)
..+.+.|++|.|+++|.+ ++..+...++.++.|++. ++...+.+.+.|+++.|++.+.+++.
T Consensus 90 ~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~---------------- 152 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE---------------- 152 (210)
T ss_dssp HHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH----------------
T ss_pred HHHHHCCCHHHHHHHHcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCH----------------
Confidence 999999999999999975 567777778788999985 45667788888899988877543211
Q ss_pred hhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHH
Q psy12638 224 KHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYV 302 (334)
Q Consensus 224 ~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~ 302 (334)
+. .+ .++.++++++.. ++.+..+.+.|+++.|+++++ .++.++.-+++.+
T Consensus 153 ---------------------~v-~~-----~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~a 203 (210)
T 4db6_A 153 ---------------------QI-LQ-----EALWALSNIASGGNEQKQAVKEAGALEKLEQLQS--HENEKIQKEAQEA 203 (210)
T ss_dssp ---------------------HH-HH-----HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHH
T ss_pred ---------------------HH-HH-----HHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHH
Confidence 11 11 256677888875 777788999999999999998 4567899999999
Q ss_pred HHHHHcC
Q psy12638 303 FYQICRH 309 (334)
Q Consensus 303 l~~l~~~ 309 (334)
+..++.|
T Consensus 204 L~~l~~~ 210 (210)
T 4db6_A 204 LEKLQSH 210 (210)
T ss_dssp HHHHCC-
T ss_pred HHHHhcC
Confidence 9998754
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.7e-18 Score=174.86 Aligned_cols=264 Identities=15% Similarity=0.197 Sum_probs=199.2
Q ss_pred hHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--c---hHHHHHHHHHHc
Q psy12638 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--K---HQKIILQLLYHL 137 (334)
Q Consensus 63 nk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~---~~~~al~~L~~L 137 (334)
|+..+.+.|+||+|+.++.++++..++.|+++|+|||.|+++|..+++.|++|+|+++|.+. . .+..|+.+|.+|
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999533 2 688999999999
Q ss_pred cCChhhhhHhhc---cCcHHHHHHHhccCCCCc------------h-HHHHHHHHHHHccCcc-----hHHHHHhc-Cch
Q psy12638 138 SIEDRVKAMFAY---TNCMSLLMNMLLVEQDDE------------T-DNVLVALCINLALNSR-----NAELMLKN-RQL 195 (334)
Q Consensus 138 S~~~~~r~~i~~---t~~i~~Lv~LL~~~~~~~------------~-~~~~~~ll~nLs~~~~-----n~~~i~~~-~gl 195 (334)
+........|.. .|+||+|++||..+++.. + ..+++..+.||+..+. .+..|.+. |++
T Consensus 529 lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~ 608 (778)
T 3opb_A 529 LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608 (778)
T ss_dssp HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence 876656666742 489999999997322221 2 3477788899988863 36778875 899
Q ss_pred HHHHHHHhcCChHH---HHHHHHHHhcCCCch-hhhh--------hhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHh
Q psy12638 196 ELLMIQAFTQKNIL---LLKVIRNMSIHSNVK-HYFV--------DYIGDIANCVQKEKDENIKLECLGTLEVINFIGTA 263 (334)
Q Consensus 196 ~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~-~~f~--------~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~l 263 (334)
+.|+.++.+.++.+ +..++.|++.++... +.|. +.+..|+.++...+ .+. .. +|+.+++.+
T Consensus 609 ~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D-~~~-r~-----AAagALAnL 681 (778)
T 3opb_A 609 STIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD-VES-QR-----AVAAIFANI 681 (778)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC-HHH-HH-----HHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCC-HHH-HH-----HHHHHHHHh
Confidence 99999998876654 467899999977653 3431 13667777764422 222 22 256778888
Q ss_pred c-CCcchHHHhhhC-CchHHHHHHhccccCCchHHHHHHHHHHHHHc----Cch--hhHHHhhcCCcHHHHHHhhhcC
Q psy12638 264 A-SDPISAEHFCKN-STVDLLINLLKEMQEDDEIVLQILYVFYQICR----HAS--CQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 264 a-~~~~~~~~l~~~-g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~----~~~--~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
+ .++..++.+++. ++|+.++++|+...+|++++.-.+.+++.|+. +.+ ....+.........|.+.|++.
T Consensus 682 ts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 682 ATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred cCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 5 477766666665 79999999999755889999999999999995 222 3333443334445666666653
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.78 E-value=6.7e-18 Score=147.78 Aligned_cols=175 Identities=13% Similarity=0.151 Sum_probs=150.4
Q ss_pred cchhHHHHHHHhcc-cchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc
Q psy12638 45 KSKREGRQDSRKLS-VYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 45 ~~~~~A~~~L~~LS-i~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
..|..|...|.+++ ..++++..+.+.|+++.|+++|.+++++++..|+.+|.||+. +++++..+++.|+||.|+.+|+
T Consensus 27 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~ 106 (210)
T 4db6_A 27 QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106 (210)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHc
Confidence 45668999999999 567899999999999999999999999999999999999996 5799999999999999999996
Q ss_pred C--CchHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHH
Q psy12638 123 E--GKHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELL 198 (334)
Q Consensus 123 ~--~~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~L 198 (334)
+ +..+..|+.+|.+|+. +++.+..+.+.|++|.|++++.+ ++..+...++..+.|++.+ ++++..+.+.|+++.|
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L 185 (210)
T 4db6_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHH
Confidence 4 4578899999999996 46677888899999999999985 5677777787889999877 7888899999999999
Q ss_pred HHHHhcCChHH---HHHHHHHHhcC
Q psy12638 199 MIQAFTQKNIL---LLKVIRNMSIH 220 (334)
Q Consensus 199 v~~l~~~~d~~---~~k~l~nLa~~ 220 (334)
++++.+++..+ +..++++++.+
T Consensus 186 ~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 186 EQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 99887655544 35567777753
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.1e-17 Score=172.83 Aligned_cols=277 Identities=14% Similarity=0.152 Sum_probs=216.4
Q ss_pred hhHHHHHHHhcccchhhHHHhHhC-CcchHHHhhccC-CChhHHHHHHHHHHhhcCChh---------------------
Q psy12638 47 KREGRQDSRKLSVYHVNKEQMANL-NLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDTN--------------------- 103 (334)
Q Consensus 47 ~~~A~~~L~~LSi~~enk~~m~~~-g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d~~--------------------- 103 (334)
++.|+.-|..||..++.|+.+.+. |.++.|++++++ ++..+..-++.+|.||+.+.+
T Consensus 351 ~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p 430 (778)
T 3opb_A 351 VEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXP 430 (778)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC--------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCc
Confidence 678999999999999999999886 569999999995 788999999999999998422
Q ss_pred ------------------HHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccC
Q psy12638 104 ------------------LREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVE 163 (334)
Q Consensus 104 ------------------~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~ 163 (334)
+|..+.+.|+||.|+.+++ ++..++.|+.+|++||.++++|..+.+.|++++|+.++.++
T Consensus 431 ~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~ 510 (778)
T 3opb_A 431 AADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK 510 (778)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC
T ss_pred ccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC
Confidence 5778889999999999995 55789999999999999999999999999999999999876
Q ss_pred CCCc--hHHHHHHHHHHHccCcchHHHHHh---cCchHHHHHHHhc--CCh--------------H-HHHHHHHHHhcCC
Q psy12638 164 QDDE--TDNVLVALCINLALNSRNAELMLK---NRQLELLMIQAFT--QKN--------------I-LLLKVIRNMSIHS 221 (334)
Q Consensus 164 ~~~~--~~~~~~~ll~nLs~~~~n~~~i~~---~~gl~~Lv~~l~~--~~d--------------~-~~~k~l~nLa~~~ 221 (334)
+... .+..++..+.|++........+.. .|+++||+.++.. +.+ . .++.++.|||..+
T Consensus 511 ~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~ 590 (778)
T 3opb_A 511 QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSE 590 (778)
T ss_dssp ---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCC
Confidence 5432 556677888898765555444421 2899999999872 221 1 3577899999997
Q ss_pred Cc-----hhh-hh--hhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchH-HHhhhCC------chHHHHHHh
Q psy12638 222 NV-----KHY-FV--DYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISA-EHFCKNS------TVDLLINLL 286 (334)
Q Consensus 222 ~~-----~~~-f~--~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~-~~l~~~g------~I~~Lv~LL 286 (334)
.+ ++. +. ++++.|..++.+.. +.+.. +|+.++++++.+++.. +.+...+ -++.|+.++
T Consensus 591 ~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n--~~Vrr-----AA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll 663 (778)
T 3opb_A 591 TSDGEEVCKHIVSTKVYWSTIENLMLDEN--VPLQR-----STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL 663 (778)
T ss_dssp SHHHHHHHHHHHHSHHHHHHHHHGGGCSS--HHHHH-----HHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG
T ss_pred cccchHHHHHHHHhcCHHHHHHHHHhCCC--HHHHH-----HHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH
Confidence 43 343 32 57888888775432 23222 3788899999988863 3443222 278999999
Q ss_pred ccccCCchHHHHHHHHHHHHH-cCchhhHHHhhcCCcHHHHHHhhhc
Q psy12638 287 KEMQEDDEIVLQILYVFYQIC-RHASCQNYLIKETDAPAYMIDLLND 332 (334)
Q Consensus 287 ~~~~~dde~vlqi~~~l~~l~-~~~~~~~~i~~~~~i~~~Li~LL~d 332 (334)
+ .+|+++.-.+..++..++ .++..++.++...+.+..+++++++
T Consensus 664 ~--s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 664 Q--LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp G--CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhc
Confidence 6 588899999999999996 5777778888876666699999988
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.65 E-value=1.2e-15 Score=142.83 Aligned_cols=175 Identities=17% Similarity=0.157 Sum_probs=150.7
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHh-hccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPR-ILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~-LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
+.|..|+..|..+....+|...+.+.|++|+|++ +|.+++++++..|+.+|.|++.+ ++.|..+++.|++|+|+.+|+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 4677899999999988889999999999999999 99999999999999999999986 689999999999999999996
Q ss_pred -C--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHH
Q psy12638 123 -E--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLEL 197 (334)
Q Consensus 123 -~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~ 197 (334)
+ +..+..|+.+|.+|+.+ +.....|...|++|.|+.+|.+ ++..++.+++.++.|++. +++.++.+++.|++++
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 3 35688899999999864 5667789999999999999986 577888888888888854 5778999999999999
Q ss_pred HHHHHhcCChHH---HHHHHHHHhcC
Q psy12638 198 LMIQAFTQKNIL---LLKVIRNMSIH 220 (334)
Q Consensus 198 Lv~~l~~~~d~~---~~k~l~nLa~~ 220 (334)
|+.++.+.+..+ ++.++.|++..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999987654433 46667777766
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.64 E-value=1.1e-14 Score=136.20 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=147.8
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHH-hccC--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhc
Q psy12638 86 NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVS-LLEE--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLL 161 (334)
Q Consensus 86 ~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~-lL~~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~ 161 (334)
+-+..|+..|.+|+.+.++...+++.|++|+|+. +|++ +..+..|+.+|.+++.+ ++.|..+.+.|++|+|+.+|.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 5788999999999999999999999999999999 9964 46799999999999875 689999999999999999998
Q ss_pred cCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhhhhhhHHHHHHHhhc
Q psy12638 162 VEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQK 240 (334)
Q Consensus 162 ~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~ 240 (334)
++++..+...++..+.|++.+ +...+.+.+.||+++|+..+.+++..+..
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~----------------------------- 185 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV----------------------------- 185 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH-----------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHH-----------------------------
Confidence 655667777777788899764 45577888889999998876543221111
Q ss_pred CCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch
Q psy12638 241 EKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS 311 (334)
Q Consensus 241 ~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~ 311 (334)
+|+.+++.++. +++.+..+++.|++|+|+++|++ .|.++.-+++.+++.++...+
T Consensus 186 --------------~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~--~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 186 --------------KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT--EHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp --------------HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS--CCSTHHHHHHHHHHHHHTTCH
T ss_pred --------------HHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcC--CChhHHHHHHHHHHHHHhCCh
Confidence 25566666655 56778899999999999999984 467899999999999998744
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.44 E-value=1.7e-12 Score=131.19 Aligned_cols=269 Identities=19% Similarity=0.211 Sum_probs=198.8
Q ss_pred ccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCC--ChhHHHHHHHHHHhhcC-Chh---------------
Q psy12638 42 IVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIE--DSNLQSSTLKLLFNLSF-DTN--------------- 103 (334)
Q Consensus 42 ~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~--~~~l~~~al~~L~NLS~-d~~--------------- 103 (334)
-..+.||.|+.-|+.+|.. ++... ..++++.|+..|+.+ |.++.+.++..|+|+-. +++
T Consensus 34 tl~eDRR~Av~~Lk~~sk~--y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~ 110 (651)
T 3grl_A 34 TLLDDRRNAVRALKSLSKK--YRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG 110 (651)
T ss_dssp CSHHHHHHHHHHHHHTTTT--TTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHH
T ss_pred cchhHHHHHHHHHHHHHHH--hHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence 3457899999999999853 44443 356789999999775 66889999999998654 322
Q ss_pred --HHHHH-HhcCChHHHHHhccCCc--hHHHHHHHHHHccCC--hhhhhHhhc-cCcHHHHHHHhccCCCCchHHHHHHH
Q psy12638 104 --LREKI-IKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIE--DRVKAMFAY-TNCMSLLMNMLLVEQDDETDNVLVAL 175 (334)
Q Consensus 104 --~r~~i-v~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~--~~~r~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~l 175 (334)
+-+.+ .+.+.|+.|+.+|++++ .+-+++.+|..|+.. ++++..|-. .+||+.||++|.. +.+.++.+++.+
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallL 189 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLL 189 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHH
Confidence 11233 36788999999997665 478899999999875 347888875 5899999999974 678888999999
Q ss_pred HHHHccCcchHH-HHHhcCchHHHHHHHhcCCh---HH----HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCcc
Q psy12638 176 CINLALNSRNAE-LMLKNRQLELLMIQAFTQKN---IL----LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDE 244 (334)
Q Consensus 176 l~nLs~~~~n~~-~i~~~~gl~~Lv~~l~~~~d---~~----~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~ 244 (334)
+.+|+.+..+.+ .++-+|+|+.|++.+..-.. .. .+.++.||..++...|. | .+++++|..++...+ +
T Consensus 190 L~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~-~ 268 (651)
T 3grl_A 190 LQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGD-E 268 (651)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCS-C
T ss_pred HHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCc-c
Confidence 999987766654 45567999999999864221 12 37789999999987777 6 468888888775332 2
Q ss_pred c------hhHHhhcHHHHHHHHHHhcC-------CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch
Q psy12638 245 N------IKLECLGTLEVINFIGTAAS-------DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS 311 (334)
Q Consensus 245 ~------~~ve~Lg~leav~~lg~la~-------~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~ 311 (334)
. ...+..+.++ ++..+.. .+.+++.+.+.|+++.|++++.+....+++..+++.+++.+.+.++
T Consensus 269 ~~~W~~Qk~~N~~~~L~---iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~ 345 (651)
T 3grl_A 269 NSGWSAQKVTNLHLMLQ---LVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ 345 (651)
T ss_dssp SSCCCHHHHHHHHHHHH---HHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHHHH---HHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH
Confidence 2 2344444443 3333322 2346788999999999999999877788999999999999998777
Q ss_pred h-hHHHhh
Q psy12638 312 C-QNYLIK 318 (334)
Q Consensus 312 ~-~~~i~~ 318 (334)
. ++.+..
T Consensus 346 ~~Q~~fa~ 353 (651)
T 3grl_A 346 VNQDYFAS 353 (651)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 4 554443
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.16 E-value=4.9e-10 Score=113.41 Aligned_cols=243 Identities=16% Similarity=0.174 Sum_probs=178.9
Q ss_pred HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-h-hHHHHHHhc-CChHHHHHhccCC--chHHHHHHHHHHccCC-h
Q psy12638 68 ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-T-NLREKIIKI-GFLPKLVSLLEEG--KHQKIILQLLYHLSIE-D 141 (334)
Q Consensus 68 ~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~-~~r~~iv~~-g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~-~ 141 (334)
.+.+.|+.|+.+|++.+..++-.|+++|..|+.+ + ++++.|... ++||.||.+|+++ ..|.-++.+|.+|+.+ .
T Consensus 119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~ 198 (651)
T 3grl_A 119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNG 198 (651)
T ss_dssp HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCH
T ss_pred cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCH
Confidence 4578899999999999999999999999999986 4 489999965 9999999999754 5688899999999886 5
Q ss_pred hhhhHhhccCcHHHHHHHhccCC---CCchHHHHHHHHHHHc-cCcchHHHHHhcCchHHHHHHHhcCChH---------
Q psy12638 142 RVKAMFAYTNCMSLLMNMLLVEQ---DDETDNVLVALCINLA-LNSRNAELMLKNRQLELLMIQAFTQKNI--------- 208 (334)
Q Consensus 142 ~~r~~i~~t~~i~~Lv~LL~~~~---~~~~~~~~~~ll~nLs-~~~~n~~~i~~~~gl~~Lv~~l~~~~d~--------- 208 (334)
+.+..++..|+++.|++++.... +..+.++++.++.||. .|+.|+..+.|.|+++.|..++....+.
T Consensus 199 ~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~ 278 (651)
T 3grl_A 199 AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVT 278 (651)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHH
Confidence 77888888999999999997532 2356677888888885 5667999999999999998776433221
Q ss_pred ---HHHHHHHHHhcCCCc------hhh-h--hhhHHHHHHHhhcCCc-cchhHHhhcHHHHHHHHHHhcC-CcchHHHhh
Q psy12638 209 ---LLLKVIRNMSIHSNV------KHY-F--VDYIGDIANCVQKEKD-ENIKLECLGTLEVINFIGTAAS-DPISAEHFC 274 (334)
Q Consensus 209 ---~~~k~l~nLa~~~~~------~~~-f--~~~i~~L~~~l~~~~~-~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~ 274 (334)
.++.++|-+...... .|. | .+.+..|++++...+. .+... +|+.++|.+.+ ++..+..|.
T Consensus 279 N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~------~Al~tla~~irgN~~~Q~~fa 352 (651)
T 3grl_A 279 NLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT------ETINTVSEVIRGCQVNQDYFA 352 (651)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH------HHHHHHHHHHhCCHHHHHHHh
Confidence 135667776665321 122 3 4788888888765442 22332 35566677777 666777777
Q ss_pred hCC-----chHHHHHH----hccccCCchHHHHHHHHHHHHHcCch-hhHHHh
Q psy12638 275 KNS-----TVDLLINL----LKEMQEDDEIVLQILYVFYQICRHAS-CQNYLI 317 (334)
Q Consensus 275 ~~g-----~I~~Lv~L----L~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~ 317 (334)
+.. -.|.++.+ +++ ...-++-..+++||.+...+++ .+..+.
T Consensus 353 ~~~vp~~~~~p~li~lL~~~~~~-~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~ 404 (651)
T 3grl_A 353 SVNAPSNPPRPAIVVLLMSMVNE-RQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404 (651)
T ss_dssp HCEESSSSCEEHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccCCCCCCcChHHHHHHHHhcc-cccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 653 24556665 433 3345777888999999986665 444443
No 41
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.44 E-value=1.2e-06 Score=90.38 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=82.2
Q ss_pred HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHH-HhccC--CchHHHHHHHHHHccCC--hh
Q psy12638 68 ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLV-SLLEE--GKHQKIILQLLYHLSIE--DR 142 (334)
Q Consensus 68 ~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv-~lL~~--~~~~~~al~~L~~LS~~--~~ 142 (334)
...+.|.|+++.|+|++...+..|+.+|.||+.|++.|..+.+.|+|++++ .+|.+ ++.+..|+.+|-||+.+ .+
T Consensus 31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 334467788899999999999999999999999999999999999998865 66754 45789999999999987 47
Q ss_pred hhhHhhccCcHHHHHHHhcc
Q psy12638 143 VKAMFAYTNCMSLLMNMLLV 162 (334)
Q Consensus 143 ~r~~i~~t~~i~~Lv~LL~~ 162 (334)
.+..+.+.|.+++|..++.+
T Consensus 111 ~~~~l~~~~il~~L~~~l~~ 130 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKA 130 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHh
Confidence 88899999999999999853
No 42
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.43 E-value=4.2e-07 Score=93.82 Aligned_cols=155 Identities=9% Similarity=0.100 Sum_probs=123.3
Q ss_pred eecccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHH-hhccCCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChH
Q psy12638 39 YGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLP-RILMIEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLP 115 (334)
Q Consensus 39 ~~~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv-~LL~~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip 115 (334)
+-+..++.|..|...|.+++..++++..+...|+|.+++ ++|...+.+++..|+.+|-||+.+ ++.+..|++.|++|
T Consensus 43 L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~ 122 (684)
T 4gmo_A 43 LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLT 122 (684)
T ss_dssp HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHH
Confidence 445667889999999999999999999999999998865 688999999999999999999986 59999999999999
Q ss_pred HHHHhccCC-----------------------chHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCC--CCchH
Q psy12638 116 KLVSLLEEG-----------------------KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQ--DDETD 169 (334)
Q Consensus 116 ~Lv~lL~~~-----------------------~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~--~~~~~ 169 (334)
+|..+++.. ...+.++.+|++||. .++....+...+++|.|+..|.+.. ..++.
T Consensus 123 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~ 202 (684)
T 4gmo_A 123 AIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIY 202 (684)
T ss_dssp HHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHH
T ss_pred HHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHH
Confidence 999998421 023346788899985 4667788888999999999986432 23465
Q ss_pred HHHHHHHHHHccCcc-hHHHHHhcC
Q psy12638 170 NVLVALCINLALNSR-NAELMLKNR 193 (334)
Q Consensus 170 ~~~~~ll~nLs~~~~-n~~~i~~~~ 193 (334)
..++..+++++.+.. ..+.+.+.+
T Consensus 203 ~~a~~~L~~ls~dn~~~~~~i~~~~ 227 (684)
T 4gmo_A 203 EEAISCLTTLSEDNLKVGQAITDDQ 227 (684)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTCC
T ss_pred HHHHHHHHHHhccCHHHHHHHHhcc
Confidence 666678888877644 455555544
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.24 E-value=5.6e-05 Score=68.25 Aligned_cols=63 Identities=14% Similarity=-0.002 Sum_probs=45.3
Q ss_pred HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCC
Q psy12638 68 ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIE 140 (334)
Q Consensus 68 ~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~ 140 (334)
.+.+.++.|++.|.+++..++..|+..|.++.. .+.+|.|+++|+++ ..+..|+..|..+...
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~ 84 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC 84 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 445678888888888888888888888888762 23577778888544 4567777777777643
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.96 E-value=0.00022 Score=61.49 Aligned_cols=188 Identities=8% Similarity=0.015 Sum_probs=121.3
Q ss_pred hCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhH
Q psy12638 69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAM 146 (334)
Q Consensus 69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~ 146 (334)
..+.++.|+++|.+++..++..|+..|..+.. .+.+|.|+++|+++ ..+..|+..|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 35689999999999999999999999998764 46899999999654 468888888877653
Q ss_pred hhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhh
Q psy12638 147 FAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHY 226 (334)
Q Consensus 147 i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~ 226 (334)
.+.++.|+++|.+ ++..+...++..+.++.. .+.++.|+..+.+.+..+-..+++.|+....
T Consensus 80 ---~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ---HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 3588999999964 566666666555555532 2467777776544333333333333332211
Q ss_pred hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHH
Q psy12638 227 FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQI 306 (334)
Q Consensus 227 f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l 306 (334)
.+.++.|.+.+...+ .. +-. .++.+++.+.. ...++.|..+++. ++.++...+..++..+
T Consensus 142 -~~~~~~L~~~l~d~~--~~-vr~----~a~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 -ERAVEPLIKALKDED--GW-VRQ----SAADALGEIGG----------ERVRAAMEKLAET--GTGFARKVAVNYLETH 201 (211)
T ss_dssp -GGGHHHHHHHTTCSS--HH-HHH----HHHHHHHHHCS----------HHHHHHHHHHHHH--CCHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHHcCCC--HH-HHH----HHHHHHHHhCc----------hhHHHHHHHHHhC--CCHHHHHHHHHHHHhc
Confidence 245677777664322 21 111 35667777742 2357889998873 4567777778888887
Q ss_pred HcCch
Q psy12638 307 CRHAS 311 (334)
Q Consensus 307 ~~~~~ 311 (334)
..++.
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 64443
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.95 E-value=0.00037 Score=62.76 Aligned_cols=111 Identities=3% Similarity=-0.076 Sum_probs=63.7
Q ss_pred chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHH-hccC-
Q psy12638 46 SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVS-LLEE- 123 (334)
Q Consensus 46 ~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~-lL~~- 123 (334)
.|..|+..|.++. ..++++.|++++.+++..++..|+.+|.++..+++.-.. ++|.|.+ ++++
T Consensus 39 vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-----l~~~L~~~~~~d~ 103 (280)
T 1oyz_A 39 KRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-----VFNILNNMALNDK 103 (280)
T ss_dssp HHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-----HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-----HHHHHHHHHhcCC
Confidence 3556777777764 235788999999999999999999999998754332111 2233332 2333
Q ss_pred -CchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHH
Q psy12638 124 -GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALC 176 (334)
Q Consensus 124 -~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll 176 (334)
+..+..++..|.++...+.. .....++.|+.++.+ ++..+...++..+
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d-~~~~vR~~a~~aL 152 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFD-KSTNVRRATAFAI 152 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTC-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 34566677777776521100 011245666666643 4444444333333
No 46
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.91 E-value=0.00037 Score=70.83 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=73.8
Q ss_pred hHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhccC--C
Q psy12638 48 REGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLEE--G 124 (334)
Q Consensus 48 ~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~~--~ 124 (334)
..|+++|.++.. + .|. ..+++.+.+++.+.++-+++.|+.+++++.. +++. ++ +++|.+.++|.+ +
T Consensus 125 ~lAL~~L~~i~~-~----~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v~-~~~~~l~~lL~D~d~ 193 (618)
T 1w63_A 125 GLALCTLGCMGS-S----EMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----ME-MFLPATKNLLNEKNH 193 (618)
T ss_dssp HHHHHHHHHHCC-H----HHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----GG-GGGGGTTTSTTCCCH
T ss_pred HHHHHHHHhcCC-H----HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----HH-HHHHHHHHHhCCCCH
Confidence 356666666542 1 222 3568889999999999999999999999985 3443 22 789999999964 4
Q ss_pred chHHHHHHHHHHccCChh-hhhHhhccCcHHHHHHHhcc
Q psy12638 125 KHQKIILQLLYHLSIEDR-VKAMFAYTNCMSLLMNMLLV 162 (334)
Q Consensus 125 ~~~~~al~~L~~LS~~~~-~r~~i~~t~~i~~Lv~LL~~ 162 (334)
..+..|+.+|+.++..+. ....+ ...+|.++++|.+
T Consensus 194 ~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~ 230 (618)
T 1w63_A 194 GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKN 230 (618)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHH
Confidence 568889999999987642 22233 3578888888763
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.85 E-value=0.00011 Score=74.25 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=53.8
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCCh
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIED 141 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~ 141 (334)
+++.+.+++.++++.+++.|+.+|.++... ++. +...+++|.+.++|+++ ..+..|+.+|++++.++
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence 456788999999999999999999999753 442 23368899999999654 56888999999998764
No 48
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.82 E-value=0.00026 Score=69.37 Aligned_cols=241 Identities=16% Similarity=0.192 Sum_probs=146.3
Q ss_pred HHhhccC-CChhHHHHHHHHHHhhcCChhHHHHHHhcC--ChHHHHHhccC--------------C-----chHHHHHHH
Q psy12638 76 LPRILMI-EDSNLQSSTLKLLFNLSFDTNLREKIIKIG--FLPKLVSLLEE--------------G-----KHQKIILQL 133 (334)
Q Consensus 76 Lv~LL~~-~~~~l~~~al~~L~NLS~d~~~r~~iv~~g--~Ip~Lv~lL~~--------------~-----~~~~~al~~ 133 (334)
+...|.. ++.+.+..++++|.-|...++.|..+.+.+ .+|+++++++. + ..+..++-.
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 3444444 235667789999999999999999998654 48888766531 1 125667788
Q ss_pred HHHccCChhhhhHhhccCcH--HHHHHHhccCCCCchHHHHHHHHHHHccCc-----chHH-HHHhcCchHHHHHHHhc-
Q psy12638 134 LYHLSIEDRVKAMFAYTNCM--SLLMNMLLVEQDDETDNVLVALCINLALNS-----RNAE-LMLKNRQLELLMIQAFT- 204 (334)
Q Consensus 134 L~~LS~~~~~r~~i~~t~~i--~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~-----~n~~-~i~~~~gl~~Lv~~l~~- 204 (334)
++-||++++.-..+...+.+ +.|++++....-+.+-.-+++.+.||.... .... .+..+++ ++.++.+..
T Consensus 252 iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~r 330 (480)
T 1ho8_A 252 IWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSER 330 (480)
T ss_dssp HHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSS
T ss_pred HHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhC
Confidence 99999999888888777643 778888887655555555567788996543 2222 3434445 455566543
Q ss_pred -CChHHHHHHHHHHhcCC----CchhhhhhhHHHHHHHhhcC----CccchhHHhhcHHHHHHHHHHhcCCcchHHHhhh
Q psy12638 205 -QKNILLLKVIRNMSIHS----NVKHYFVDYIGDIANCVQKE----KDENIKLECLGTLEVINFIGTAASDPISAEHFCK 275 (334)
Q Consensus 205 -~~d~~~~k~l~nLa~~~----~~~~~f~~~i~~L~~~l~~~----~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~ 275 (334)
-.|+.+..-+..+...= .....|.+|...+-.-..+. ..++|=-|-..- + .+.++
T Consensus 331 k~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~k---------f-~e~~~------ 394 (480)
T 1ho8_A 331 KYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE---------F-KKDNY------ 394 (480)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGG---------G-SSGGG------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHH---------H-Hhcch------
Confidence 24555433333322211 11111555555543211111 112222222100 0 12222
Q ss_pred CCchHHHHHHhcccc-------CCchHHHHH-HHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 276 NSTVDLLINLLKEMQ-------EDDEIVLQI-LYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 276 ~g~I~~Lv~LL~~~~-------~dde~vlqi-~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
.++..|+++|.+.. +.|..+++| ++=+|.+++|-+....++.+-++-...++||.++|
T Consensus 395 -~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d 460 (480)
T 1ho8_A 395 -KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD 460 (480)
T ss_dssp -HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS
T ss_pred -HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC
Confidence 27889999997431 345566665 88999999887866678888888878889998765
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.81 E-value=7.7e-05 Score=78.13 Aligned_cols=254 Identities=14% Similarity=0.156 Sum_probs=141.2
Q ss_pred CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHh-------cCChHHHHHhccCC--chHHHHHHHHHHccCC
Q psy12638 70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK-------IGFLPKLVSLLEEG--KHQKIILQLLYHLSIE 140 (334)
Q Consensus 70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~-------~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~ 140 (334)
.+.++.|++.+.+++...++.++.+|..++.+. ...+.+ .+++|.++++++++ ..|..|+..|..+...
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~--~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS--AEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH--TTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh--HHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999998653 122211 34678888888644 5688888888877643
Q ss_pred hhhhhHhhc-cCcHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCChHH---HHHHHH
Q psy12638 141 DRVKAMFAY-TNCMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQKNIL---LLKVIR 215 (334)
Q Consensus 141 ~~~r~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~ 215 (334)
... ..... .+.++.+.+++. .+++++...+...+.+++.. ++......+ +.++.++..+.+.++.+ ++..+.
T Consensus 205 ~~~-~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~ 281 (852)
T 4fdd_A 205 RTQ-ALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWL 281 (852)
T ss_dssp TCH-HHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ccH-HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 221 11111 246778888775 45667777666677776432 211111111 23444444433333333 255567
Q ss_pred HHhcCCCchhhhh----hhHHHHHHHhh----------cC--C--c----------cchhHHhhcHH-------------
Q psy12638 216 NMSIHSNVKHYFV----DYIGDIANCVQ----------KE--K--D----------ENIKLECLGTL------------- 254 (334)
Q Consensus 216 nLa~~~~~~~~f~----~~i~~L~~~l~----------~~--~--~----------~~~~ve~Lg~l------------- 254 (334)
+++.+...++.+. ..++.++..+. .. + . ......+++.+
T Consensus 282 ~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~ 361 (852)
T 4fdd_A 282 TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHIL 361 (852)
T ss_dssp HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 7776643333222 33333444331 11 0 0 00112222221
Q ss_pred ----------------HHHHHHHHhcCCcchHHHh--hhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhh--H
Q psy12638 255 ----------------EVINFIGTAASDPISAEHF--CKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQ--N 314 (334)
Q Consensus 255 ----------------eav~~lg~la~~~~~~~~l--~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~--~ 314 (334)
.++.++|.++.... +.+ .-.+++|.++..++. ++..+.-.++.+++.++.+-+.. .
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~--~~~~~~l~~~l~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCM--QGMIPYLPELIPHLIQCLSD--KKALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTH--HHHGGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhccchHH
Confidence 57888999987433 111 113467888887753 34467777899999988543211 1
Q ss_pred HHhhcCCcHHHHHHhhhcCC
Q psy12638 315 YLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 315 ~i~~~~~i~~~Li~LL~d~n 334 (334)
..+. .+...|++.|+|.+
T Consensus 438 ~~~~--~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 438 TYLK--PLMTELLKRILDSN 455 (852)
T ss_dssp TTHH--HHHHHHHHHHTCSS
T ss_pred HHHH--HHHHHHHHHHhCCC
Confidence 1111 24446777776653
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.81 E-value=0.00052 Score=58.57 Aligned_cols=182 Identities=8% Similarity=0.016 Sum_probs=117.2
Q ss_pred CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHh
Q psy12638 70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMF 147 (334)
Q Consensus 70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i 147 (334)
.+..+.++++|.+++..++..|+..|..+.. .+.+|.|+++|+++ ..+..|+..|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 3567889999999999999999999998764 36789999999644 467778888876643
Q ss_pred hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhhh
Q psy12638 148 AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYF 227 (334)
Q Consensus 148 ~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f 227 (334)
.++++.|+++|.+ ++..+...++..+.++.. .+.++.|+..+.+.+..+-..+++.++....
T Consensus 75 --~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 --ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp --GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred --HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 3589999999974 566676666666655421 2367777776544333332333333332211
Q ss_pred hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHH
Q psy12638 228 VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQI 306 (334)
Q Consensus 228 ~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l 306 (334)
.+.++.|...+...+ .. +-. .++.++|.+.. + ..++.|.++++. .+.++...++.++..+
T Consensus 137 ~~~~~~L~~~l~d~~--~~-vr~----~A~~aL~~~~~-~---------~~~~~L~~~l~d--~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ERAVEPLIKALKDED--GW-VRQ----SAADALGEIGG-E---------RVRAAMEKLAET--GTGFARKVAVNYLETH 196 (201)
T ss_dssp GGGHHHHHHHTTCSS--HH-HHH----HHHHHHHHHCS-H---------HHHHHHHHHHHH--CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCC--HH-HHH----HHHHHHHHhCc-h---------hHHHHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence 245667777664322 11 111 36677777732 1 257888888863 4456666666666654
No 51
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.59 E-value=0.0005 Score=71.97 Aligned_cols=273 Identities=10% Similarity=0.081 Sum_probs=146.6
Q ss_pred hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--
Q psy12638 47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG-- 124 (334)
Q Consensus 47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~-- 124 (334)
|+-|...|..++.... ..+. ..+++.+.+++.+++...++.|+.+|.+++....-.-.-.-.+++|.++.+++++
T Consensus 338 r~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~ 414 (852)
T 4fdd_A 338 RKCSAAALDVLANVYR--DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA 414 (852)
T ss_dssp HHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH
Confidence 5567778877775322 1222 2467788888899999999999999999997643211112256788888888655
Q ss_pred chHHHHHHHHHHccCChhhh-hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchH-HHHHhcCchHHHHHHH
Q psy12638 125 KHQKIILQLLYHLSIEDRVK-AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNA-ELMLKNRQLELLMIQA 202 (334)
Q Consensus 125 ~~~~~al~~L~~LS~~~~~r-~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~-~~i~~~~gl~~Lv~~l 202 (334)
..+..|+.+|.+++..-... ..-...+.++.|++.+.. ++..++..+...+.+++...... .... .+-++.|+..+
T Consensus 415 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l 492 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAF 492 (852)
T ss_dssp HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHH
Confidence 46888888898888642111 011113477888888864 45677666666666765332211 1011 12344444444
Q ss_pred hcCChHH---HHHHHHHHhcCCCch---hh-hhhhHHHHHHHhhc--CCccchhHHhhcHHHHHHHHHHhcCC--cchHH
Q psy12638 203 FTQKNIL---LLKVIRNMSIHSNVK---HY-FVDYIGDIANCVQK--EKDENIKLECLGTLEVINFIGTAASD--PISAE 271 (334)
Q Consensus 203 ~~~~d~~---~~k~l~nLa~~~~~~---~~-f~~~i~~L~~~l~~--~~~~~~~ve~Lg~leav~~lg~la~~--~~~~~ 271 (334)
.+.+... ++.++..++..-+.. .. +...++.+++.... .+..+. .. ++.+++.++.. ..+..
T Consensus 493 ~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~------~~~~l~~i~~~~g~~~~~ 565 (852)
T 4fdd_A 493 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FP------LLECLSSVATALQSGFLP 565 (852)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HH------HHHHHHHHHHHHGGGGHH
T ss_pred HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-HH------HHHHHHHHHHHHhHhHHH
Confidence 4433332 355666666432211 11 23344444433221 111122 11 12223333321 12211
Q ss_pred HhhhCCchHHHHHHhccc---------------cCCchHHHHHHHHHHHHHcCch--hhHHHhhcCCcHHHHHHhhhcCC
Q psy12638 272 HFCKNSTVDLLINLLKEM---------------QEDDEIVLQILYVFYQICRHAS--CQNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 272 ~l~~~g~I~~Lv~LL~~~---------------~~dde~vlqi~~~l~~l~~~~~--~~~~i~~~~~i~~~Li~LL~d~n 334 (334)
.+. .+++.++++++.. .+|.++...++.+++.++..-+ ....+ ...++...+++.++|++
T Consensus 566 ~~~--~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~-~~~~~~~~l~~~l~~~~ 642 (852)
T 4fdd_A 566 YCE--PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLV-ARSNILTLMYQCMQDKM 642 (852)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHH-HTCCHHHHHHHHTTCSS
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHh-cCCcHHHHHHHHhCCCC
Confidence 111 1345555555431 1255677777888888874333 33333 23467768888888753
No 52
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.57 E-value=0.0012 Score=64.71 Aligned_cols=237 Identities=14% Similarity=0.130 Sum_probs=144.1
Q ss_pred HHHHHHHhcccchhhHHHhHhCC--cchHHHhhccC---------------C--ChhHHHHHHHHHHhhcCChhHHHHHH
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLN--LIEKLPRILMI---------------E--DSNLQSSTLKLLFNLSFDTNLREKII 109 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g--~I~~Lv~LL~~---------------~--~~~l~~~al~~L~NLS~d~~~r~~iv 109 (334)
-++.+|+-|...+++|....+.+ .+|++++++.. + ..+++..++-+++-|||+++.-+.+.
T Consensus 187 i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~ 266 (480)
T 1ho8_A 187 VCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELV 266 (480)
T ss_dssp HHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 37788888888899998887653 46777654431 1 35789999999999999999999999
Q ss_pred hcCCh--HHHHHhccC---CchHHHHHHHHHHccCCh-----h-hhhHhhccCcHHHHHHHhccCCCC--chHHHHHHHH
Q psy12638 110 KIGFL--PKLVSLLEE---GKHQKIILQLLYHLSIED-----R-VKAMFAYTNCMSLLMNMLLVEQDD--ETDNVLVALC 176 (334)
Q Consensus 110 ~~g~I--p~Lv~lL~~---~~~~~~al~~L~~LS~~~-----~-~r~~i~~t~~i~~Lv~LL~~~~~~--~~~~~~~~ll 176 (334)
+.+++ +.|+.+++. +..-..++++|.||.... . .+.++...++ +++++.|...... ++..+.-.+.
T Consensus 267 ~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~ 345 (480)
T 1ho8_A 267 QKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLK 345 (480)
T ss_dssp TTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 88855 788888853 456788999999997653 1 1223322334 6667777654433 3322221111
Q ss_pred HHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCC----------chhhh----hhhHHHHHHHhhcC-
Q psy12638 177 INLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN----------VKHYF----VDYIGDIANCVQKE- 241 (334)
Q Consensus 177 ~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~----------~~~~f----~~~i~~L~~~l~~~- 241 (334)
-.| .+.+.+---|..-..-+.+|. =.|.+ |..+| .+.+..|++++.+.
T Consensus 346 e~L------~~~~~~ltsfDeY~~El~sG~-----------L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 346 EIL------ENEYQELTSFDEYVAELDSKL-----------LCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp HHH------HHHHHTCCHHHHHHHHHHHTC-----------CCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred HHH------HHHHHhcccHHHHHHHHhcCC-----------cccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 111 111111111222222222221 11111 11112 25667777777531
Q ss_pred ------CccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638 242 ------KDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH 309 (334)
Q Consensus 242 ------~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~ 309 (334)
+..+..+-++ |+-=+|-+++ .|..+..+.+.|+=..+.+|+. .+|+++.-+++.|+..+..|
T Consensus 409 ~~~~~~~s~d~~~laV----Ac~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~--h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQV----ALNDITHVVELLPESIDVLDKTGGKADIMELLN--HSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HTTCCCSHHHHHHHHH----HHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS--CSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEe----ecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHHh
Confidence 0122222111 3344788888 7888888888898777778886 67899999999999988654
No 53
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.47 E-value=0.0029 Score=54.28 Aligned_cols=150 Identities=11% Similarity=0.029 Sum_probs=99.1
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG 124 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~ 124 (334)
..|..|+..|.++.. .++++.|++++.+++..++..|+.+|.++.. .+.+|.|+++|+++
T Consensus 34 ~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~ 93 (211)
T 3ltm_A 34 YVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDE 93 (211)
T ss_dssp HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCC
Confidence 334466666665432 3689999999999999999999999998863 46789999999654
Q ss_pred --chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHH
Q psy12638 125 --KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQA 202 (334)
Q Consensus 125 --~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l 202 (334)
..+..|+..|..+.. .+.++.|++++. .++..+...++..+.++.. ...++.|+..+
T Consensus 94 ~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l 152 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD----------ERAVEPLIKALK-DEDWFVRIAAAFALGEIGD----------ERAVEPLIKAL 152 (211)
T ss_dssp SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHH
Confidence 568888888887754 348899999996 4666777666666666531 24677777766
Q ss_pred hcCChHHHHHHHHHHhcCCCchhhhhhhHHHHHHHhhc
Q psy12638 203 FTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQK 240 (334)
Q Consensus 203 ~~~~d~~~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~ 240 (334)
.+.+..+-..++..|..-.. .+.++.|..++..
T Consensus 153 ~d~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d 185 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEIGG-----ERVRAAMEKLAET 185 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCS-----HHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCc-----hhHHHHHHHHHhC
Confidence 44333332333333332211 2345556665543
No 54
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.38 E-value=0.0018 Score=65.23 Aligned_cols=215 Identities=9% Similarity=0.043 Sum_probs=128.2
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCChhhhhHhhc
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIEDRVKAMFAY 149 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~~~~r~~i~~ 149 (334)
++..+.+-+.++++.++..|+++|+++. .++..+.+ +|.+.+++++ |..|..|+..++++.... ...+..
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~ 158 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVED 158 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhccc
Confidence 5678888999999999999999999997 45544443 5889999964 457888888898886532 122333
Q ss_pred cCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc-hH-HHHHhcCchHHHHHHHhcCChHH-HHHHHHHHhcCCCchhh
Q psy12638 150 TNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR-NA-ELMLKNRQLELLMIQAFTQKNIL-LLKVIRNMSIHSNVKHY 226 (334)
Q Consensus 150 t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~-n~-~~i~~~~gl~~Lv~~l~~~~d~~-~~k~l~nLa~~~~~~~~ 226 (334)
.+.++.|.++|. +++..+...++.++..+..+.. .. ..+. .+.+..|+..+.+. +++ ..++++-++...+....
T Consensus 159 ~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~-~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~ 235 (591)
T 2vgl_B 159 QGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLN-PQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDR 235 (591)
T ss_dssp HHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCH-HHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHH
T ss_pred ccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhcc-HHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChH
Confidence 467899999996 4666777777777777765432 10 0000 12355666665443 444 35556665555432211
Q ss_pred -hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC----CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHH
Q psy12638 227 -FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS----DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILY 301 (334)
Q Consensus 227 -f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~ 301 (334)
..+.++.+...+. +.+..... +|+.+++.++. +++..+.+. ..+.++|+.++. .|.++..-++.
T Consensus 236 ~~~~~l~~l~~~l~-~~~~~V~~------ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~---~d~~vr~~aL~ 304 (591)
T 2vgl_B 236 EAQSICERVTPRLS-HANSAVVL------SAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS---GEPEVQYVALR 304 (591)
T ss_dssp HHHHHHHHHTTCSC-SSTTHHHH------HHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT---SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCChHHHH------HHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc---CCccHHHHHHH
Confidence 1233333333332 22223322 45666677653 333333222 235677777663 45567776777
Q ss_pred HHHHHHc
Q psy12638 302 VFYQICR 308 (334)
Q Consensus 302 ~l~~l~~ 308 (334)
+++.++.
T Consensus 305 ~l~~i~~ 311 (591)
T 2vgl_B 305 NINLIVQ 311 (591)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777763
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.37 E-value=0.0052 Score=62.28 Aligned_cols=149 Identities=13% Similarity=0.105 Sum_probs=96.0
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCC-hhhhhHhh
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIE-DRVKAMFA 148 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~-~~~r~~i~ 148 (334)
++..+.+-+.++++.++..|+++|+++.. ++ |. ..++|.+.++|+ +|..|..|+..++++... ++. +
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~---v- 177 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL---M- 177 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG---G-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH---H-
Confidence 66778888899999999999999999984 33 33 356788889995 455788888889888653 221 1
Q ss_pred ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcch-HHHHHhcCchHHHHHHHhc--------------CChHHH---
Q psy12638 149 YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRN-AELMLKNRQLELLMIQAFT--------------QKNILL--- 210 (334)
Q Consensus 149 ~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n-~~~i~~~~gl~~Lv~~l~~--------------~~d~~~--- 210 (334)
.+.++.+.++|. +++..+...++.++.-+...... ...+. ..++.++..+.+ ..+|++
T Consensus 178 -~~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 -EMFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp -GGGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred -HHHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 156777778885 45566655555666666544221 12222 467777776553 236653
Q ss_pred -HHHHHHHhcCCCchh-hhhhhHHHH
Q psy12638 211 -LKVIRNMSIHSNVKH-YFVDYIGDI 234 (334)
Q Consensus 211 -~k~l~nLa~~~~~~~-~f~~~i~~L 234 (334)
+++++.++..++... .+.+.+..+
T Consensus 254 il~~L~~l~~~~~~~~~~~~~~L~~l 279 (618)
T 1w63_A 254 ILRLLRILGRNDDDSSEAMNDILAQV 279 (618)
T ss_dssp HHHHHHHHTTTCHHHHHTTHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 667777777654322 233444444
No 56
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.36 E-value=0.0019 Score=65.75 Aligned_cols=180 Identities=12% Similarity=0.073 Sum_probs=98.0
Q ss_pred chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc---
Q psy12638 46 SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--- 122 (334)
Q Consensus 46 ~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--- 122 (334)
-|+.|+.++.++.. .+.+.+...+.++.+.++|.+++..++..|+.+|+.++.+.. .. -...+|++++.|.
T Consensus 164 VRK~A~~al~kl~~--~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~--~~~~~~~~~~~L~~ll 237 (621)
T 2vgl_A 164 VKQSAALCLLRLYR--TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--EE--FKTSVSLAVSRLSRIV 237 (621)
T ss_dssp HHHHHHHHHHHHHH--HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--HH--HTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--HH--HHHHHHHHHHHHHHHH
Confidence 34566666666532 233333335889999999999999999999999999986421 11 1356777776553
Q ss_pred ----------------CCchHHHHHHHHHHccC--ChhhhhHhhccCcHHHHHHHhccCC----------CCchHHHHHH
Q psy12638 123 ----------------EGKHQKIILQLLYHLSI--EDRVKAMFAYTNCMSLLMNMLLVEQ----------DDETDNVLVA 174 (334)
Q Consensus 123 ----------------~~~~~~~al~~L~~LS~--~~~~r~~i~~t~~i~~Lv~LL~~~~----------~~~~~~~~~~ 174 (334)
+|=.|-..+.+|..++. +++.+..+. +.++.++..+...+ ...+--+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~ 315 (621)
T 2vgl_A 238 TSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAIS 315 (621)
T ss_dssp HCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHH
T ss_pred hCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHH
Confidence 12246667777777764 234444332 24444444332111 1133334555
Q ss_pred HHHHHccCcchHHHHHhcCchHHHHHHHhcCChHH----HHHHHHHHhcCCCchhhhhhhHHHHHHHhh
Q psy12638 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNIL----LLKVIRNMSIHSNVKHYFVDYIGDIANCVQ 239 (334)
Q Consensus 175 ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~ 239 (334)
+++.+..+++-.. .++..|..++.+ .++- .+..+..++...+....|.++...++..+.
T Consensus 316 ~i~~l~~~~~~~~-----~~~~~L~~~L~~-~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~ 378 (621)
T 2vgl_A 316 LIIHHDSEPNLLV-----RACNQLGQFLQH-RETNLRYLALESMCTLASSEFSHEAVKTHIETVINALK 378 (621)
T ss_dssp HHHHHCCCHHHHH-----HHHHHHHHHSSC-SCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHT
T ss_pred HHHhcCCcHHHHH-----HHHHHHHHHhcC-CCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhc
Confidence 5666653332222 245566666543 4442 355566666655432224444444444443
No 57
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.36 E-value=0.005 Score=52.30 Aligned_cols=119 Identities=14% Similarity=0.060 Sum_probs=86.8
Q ss_pred chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC-
Q psy12638 46 SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG- 124 (334)
Q Consensus 46 ~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~- 124 (334)
.|..|+..|.++.. .++++.|++++.+++..++..|+..|..+.. .+.+|.|+++|+++
T Consensus 30 vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~ 89 (201)
T 3ltj_A 30 VRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDED 89 (201)
T ss_dssp HHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCC
Confidence 44566677765432 3689999999999999999999999998763 35789999999654
Q ss_pred -chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHh
Q psy12638 125 -KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAF 203 (334)
Q Consensus 125 -~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~ 203 (334)
..+..|+..|..+.. .++++.|++++. .++..+...++..+.++.. .+.++.|+..+.
T Consensus 90 ~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~ 148 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGD----------ERAVEPLIKALK-DEDWFVRIAAAFALGEIGD----------ERAVEPLIKALK 148 (201)
T ss_dssp HHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCc----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHc
Confidence 478888888887654 348999999996 4566776666666666531 246677776664
Q ss_pred cC
Q psy12638 204 TQ 205 (334)
Q Consensus 204 ~~ 205 (334)
+.
T Consensus 149 d~ 150 (201)
T 3ltj_A 149 DE 150 (201)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 58
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.25 E-value=0.012 Score=57.71 Aligned_cols=221 Identities=11% Similarity=0.090 Sum_probs=124.0
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHhh
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFA 148 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i~ 148 (334)
.+++.|..++.+++..++..|...|.+++.+... .-+..-++|.+..+..++ ..|..|+.++..++..-.. . .
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~-~ 161 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--A-V 161 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--H-H
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--H-H
Confidence 4566666777888899999999999999975321 122334567676776543 4577777777777543211 1 1
Q ss_pred ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHH---HHHHHHHHhcCCCchh
Q psy12638 149 YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKH 225 (334)
Q Consensus 149 ~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~ 225 (334)
....+|.+..++. .++..++..++..+..++....... ....-++.+...+...++.+ ++..+..++..-+...
T Consensus 162 ~~~l~~~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 238 (588)
T 1b3u_A 162 KAELRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLELDN--VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238 (588)
T ss_dssp HHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCHHH--HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhcHHh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHH
Confidence 2345777777775 4667777766666666654332211 12235555555544333322 3555666665433222
Q ss_pred hhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHH
Q psy12638 226 YFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQ 305 (334)
Q Consensus 226 ~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~ 305 (334)
.....++.+.+.+.. + +..+.. .++.++|.++..... . .....++|.+.++++ .++.++...++.+++.
T Consensus 239 ~~~~~~~~l~~~~~d-~--~~~vR~----~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~ 307 (588)
T 1b3u_A 239 LEALVMPTLRQAAED-K--SWRVRY----MVADKFTELQKAVGP-E-ITKTDLVPAFQNLMK--DCEAEVRAAASHKVKE 307 (588)
T ss_dssp HHHHTHHHHHHHHTC-S--SHHHHH----HHHHTHHHHHHHHCH-H-HHHHTHHHHHHHHHT--CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC-C--CHHHHH----HHHHHHHHHHHHhCc-c-cchhHHHHHHHHHhC--CCcHHHHHHHHHHHHH
Confidence 112233334444422 1 222211 255666666642111 1 123347889999886 3455677777889998
Q ss_pred HHcCc
Q psy12638 306 ICRHA 310 (334)
Q Consensus 306 l~~~~ 310 (334)
++..-
T Consensus 308 ~~~~~ 312 (588)
T 1b3u_A 308 FCENL 312 (588)
T ss_dssp HHHTS
T ss_pred HHHHh
Confidence 88543
No 59
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.84 E-value=0.016 Score=56.85 Aligned_cols=96 Identities=6% Similarity=0.096 Sum_probs=53.8
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCCh--hhhhHh
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIED--RVKAMF 147 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~--~~r~~i 147 (334)
++|.+.+++.+++..++..|+.+|..++.... .......++|.+..+++++ ..+..|+..|..++..- +.+...
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 320 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV 320 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC--cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhH
Confidence 55556666666666777777777777764211 1123345688888888654 45777777777665431 111111
Q ss_pred hccCcHHHHHHHhccCCCCchHH
Q psy12638 148 AYTNCMSLLMNMLLVEQDDETDN 170 (334)
Q Consensus 148 ~~t~~i~~Lv~LL~~~~~~~~~~ 170 (334)
.....+|.+.+++.. ++..++.
T Consensus 321 ~~~~l~p~l~~~l~d-~~~~vR~ 342 (588)
T 1b3u_A 321 IMSQILPCIKELVSD-ANQHVKS 342 (588)
T ss_dssp HHHTHHHHHHHHHTC-SCHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCHHHHH
Confidence 123456667676653 3444433
No 60
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.64 E-value=0.046 Score=56.33 Aligned_cols=251 Identities=9% Similarity=-0.003 Sum_probs=133.8
Q ss_pred cchhHHHHHHHhcccchhhHHHh--HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHH--HHHHhcCChHHHHHh
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQM--ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLR--EKIIKIGFLPKLVSL 120 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m--~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r--~~iv~~g~Ip~Lv~l 120 (334)
+.|+.|+.++..++.... +..+ .-..+++.+++.+.++++.++..++.+|.+++..-... ..-.-..++|.+++.
T Consensus 384 ~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~ 462 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIG 462 (861)
T ss_dssp HHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHH
Confidence 456677778887775421 1111 11257888999999999999999999999988542110 000112356777777
Q ss_pred ccC-CchHHHHHHHHHHccCCh------hhhhHhhccCcHHHHHHHhccCC-CCchHHHHHHHHHHHcc-CcchHHHHHh
Q psy12638 121 LEE-GKHQKIILQLLYHLSIED------RVKAMFAYTNCMSLLMNMLLVEQ-DDETDNVLVALCINLAL-NSRNAELMLK 191 (334)
Q Consensus 121 L~~-~~~~~~al~~L~~LS~~~------~~r~~i~~t~~i~~Lv~LL~~~~-~~~~~~~~~~ll~nLs~-~~~n~~~i~~ 191 (334)
+++ +..+..|+..|.+++..- .....+ .+.++.|++++.+.+ +..++..+...+..+.. .+........
T Consensus 463 l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~ 540 (861)
T 2bpt_A 463 LQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA 540 (861)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH
Confidence 754 456777888888776431 111111 235777888886432 24555555555555532 2222222222
Q ss_pred cCchHHHHHHHhcC--------C----hH------HHHHHHHHHhcCCCch--hhhhhhHHHHHHHhhcCCccchhHHhh
Q psy12638 192 NRQLELLMIQAFTQ--------K----NI------LLLKVIRNMSIHSNVK--HYFVDYIGDIANCVQKEKDENIKLECL 251 (334)
Q Consensus 192 ~~gl~~Lv~~l~~~--------~----d~------~~~k~l~nLa~~~~~~--~~f~~~i~~L~~~l~~~~~~~~~ve~L 251 (334)
.-++.+++.+.+. + +. .++.++.+++..-+.. ......++.++..+...+.+.. .+
T Consensus 541 -~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v-~~-- 616 (861)
T 2bpt_A 541 -SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFI-ED-- 616 (861)
T ss_dssp -HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGT-HH--
T ss_pred -HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcH-HH--
Confidence 2455566655431 1 11 2344555555443321 1122344444555544331112 11
Q ss_pred cHHHHHHHHHHhcCC--cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638 252 GTLEVINFIGTAASD--PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH 309 (334)
Q Consensus 252 g~leav~~lg~la~~--~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~ 309 (334)
.+..+++.++.. .+....+- .++|.|.+.++ .++.++...++.+++.++..
T Consensus 617 ---~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 617 ---DVFYAISALAASLGKGFEKYLE--TFSPYLLKALN--QVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp ---HHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHH--CTTSHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhc--cccHHHHHHHHHHHHHHHHH
Confidence 134455665542 22333332 27888888884 34556777778888877743
No 61
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.53 E-value=0.061 Score=50.31 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=121.4
Q ss_pred HHhhccCCChhHHHHHHHHHHh-hcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhh-ccC
Q psy12638 76 LPRILMIEDSNLQSSTLKLLFN-LSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFA-YTN 151 (334)
Q Consensus 76 Lv~LL~~~~~~l~~~al~~L~N-LS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~-~t~ 151 (334)
+++-|.+.+.+-++.++.-|.. ++.|.+.-.++++.|++..|++... ++..+.++++.|.+|=.+..+-.-+. ...
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3444446667778888877877 7779999999999999999999994 56789999999999988866664444 556
Q ss_pred cHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhhhhhh
Q psy12638 152 CMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDY 230 (334)
Q Consensus 152 ~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f~~~ 230 (334)
.|..+..++.+ .+..+.+.+++++..+... +.+...+.++ +++.+... -.+.
T Consensus 203 fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~a---------------------v~~v~~~~-----~~~p 255 (339)
T 3dad_A 203 TIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRA---------------------VNSVASTT-----GAPP 255 (339)
T ss_dssp HHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHH---------------------HHHHHHHH-----CCCT
T ss_pred HHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHH---------------------HHHhhhcc-----CCCc
Confidence 89999999984 6677777777877766433 3344443332 11111100 0112
Q ss_pred HHHHHHHhhcCC--ccchhHHhhcHHHHHHHHHHhcCCcc----hHHHhhhCCchHHHHHHhccccCCchHHHHH
Q psy12638 231 IGDIANCVQKEK--DENIKLECLGTLEVINFIGTAASDPI----SAEHFCKNSTVDLLINLLKEMQEDDEIVLQI 299 (334)
Q Consensus 231 i~~L~~~l~~~~--~~~~~ve~Lg~leav~~lg~la~~~~----~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi 299 (334)
...++..+.+.+ +.+..+.++..+ -++-.-+.+.+ ..+.+.+.|+-..+.+.++.+.+|.|++-|.
T Consensus 256 ~~~Lv~~L~~~~~~D~elq~~amtLI---N~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 256 WANLVSILEEKNGADPELLVYTVTLI---NKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp THHHHHHHTTTTSCCHHHHHHHHHHH---HHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHH---HHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHH
Confidence 345555554222 234444433222 11111122222 3345677786677777788666777877765
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.53 E-value=0.14 Score=51.89 Aligned_cols=213 Identities=14% Similarity=0.171 Sum_probs=120.5
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc--cC--CchHHHHHHHHHHccCChhhhhHh
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL--EE--GKHQKIILQLLYHLSIEDRVKAMF 147 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL--~~--~~~~~~al~~L~~LS~~~~~r~~i 147 (334)
++..+.+=+.++++..+..|+++|+++.. ++ |.+ .++|.+.++| .+ |-.|..|+-.++++...+ ...+
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~~~ 183 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS-RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PDLV 183 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GGGC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hhhc
Confidence 45667777889999999999999999975 33 332 5789999999 54 446787888788886532 2333
Q ss_pred hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHh----cC-C-----------hHHH-
Q psy12638 148 AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAF----TQ-K-----------NILL- 210 (334)
Q Consensus 148 ~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~----~~-~-----------d~~~- 210 (334)
...+.++.+.++|. +++..+...++.++..++.+ +.+.+. ..++.+++.+. .+ . +|++
T Consensus 184 ~~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~--~~~~~~--~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~q 258 (621)
T 2vgl_A 184 PMGDWTSRVVHLLN-DQHLGVVTAATSLITTLAQK--NPEEFK--TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLS 258 (621)
T ss_dssp CCCSCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHH--CHHHHT--THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHH
T ss_pred CchhHHHHHHHHhC-CCCccHHHHHHHHHHHHHHh--ChHHHH--HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHH
Confidence 33578999999995 45666655555555555332 212111 24444444332 11 1 5664
Q ss_pred HHHHHHHhcCCCc---h--hhhhhhHHHHHHHhhcCC--------c--cchhHHhhcHHHHHHHHHHhcCCcchHHHhhh
Q psy12638 211 LKVIRNMSIHSNV---K--HYFVDYIGDIANCVQKEK--------D--ENIKLECLGTLEVINFIGTAASDPISAEHFCK 275 (334)
Q Consensus 211 ~k~l~nLa~~~~~---~--~~f~~~i~~L~~~l~~~~--------~--~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~ 275 (334)
.++++-++.-.+. . ..+.+.+..++..+.+.. + ...+. |++.++-.+..+++...
T Consensus 259 i~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~------ea~~~i~~l~~~~~~~~---- 328 (621)
T 2vgl_A 259 VKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLF------EAISLIIHHDSEPNLLV---- 328 (621)
T ss_dssp HHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHH------HHHHHHHHHCCCHHHHH----
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHH------HHHHHHHhcCCcHHHHH----
Confidence 5566655554331 1 113445555554432211 0 02222 34444444443333221
Q ss_pred CCchHHHHHHhccccCCchHHHHHHHHHHHHHcCc
Q psy12638 276 NSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHA 310 (334)
Q Consensus 276 ~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~ 310 (334)
.+++.|..+|. ..|.++...++.++..++...
T Consensus 329 -~~~~~L~~~L~--~~~~niry~aL~~l~~l~~~~ 360 (621)
T 2vgl_A 329 -RACNQLGQFLQ--HRETNLRYLALESMCTLASSE 360 (621)
T ss_dssp -HHHHHHHHHSS--CSCHHHHHHHHHHHHHHTTCT
T ss_pred -HHHHHHHHHhc--CCCcchHHHHHHHHHHHHhcc
Confidence 14566666664 345566666677777776543
No 63
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.49 E-value=0.037 Score=57.15 Aligned_cols=254 Identities=8% Similarity=-0.016 Sum_probs=134.4
Q ss_pred cchhHHHHHHHhcccchh-hHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhH----HHHHHhcCChHHHHH
Q psy12638 45 KSKREGRQDSRKLSVYHV-NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNL----REKIIKIGFLPKLVS 119 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~e-nk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~----r~~iv~~g~Ip~Lv~ 119 (334)
+.|..|..++..++.... ....-.-.+++|.+++.+.+++..++..|+.+|.+++..... ... -..++|.|..
T Consensus 381 ~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--l~~~l~~l~~ 458 (876)
T 1qgr_A 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLLQCLIE 458 (876)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH--HHHHHHHHHH
Confidence 456677888888775422 111112245889999999999999999999999999964211 111 1245677777
Q ss_pred hccC-CchHHHHHHHHHHccCChh------------hhhHhhc--cCcHHHHHHHhccCC--CCchHHHHHHHHHHHccC
Q psy12638 120 LLEE-GKHQKIILQLLYHLSIEDR------------VKAMFAY--TNCMSLLMNMLLVEQ--DDETDNVLVALCINLALN 182 (334)
Q Consensus 120 lL~~-~~~~~~al~~L~~LS~~~~------------~r~~i~~--t~~i~~Lv~LL~~~~--~~~~~~~~~~ll~nLs~~ 182 (334)
.+++ +..+..|+..|.+++..-. ....+.. ...+|.|...+.... ...+...+...+..+...
T Consensus 459 ~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~ 538 (876)
T 1qgr_A 459 GLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKN 538 (876)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHH
Confidence 7754 4567778888888865321 0011111 246777777776432 224433333333333211
Q ss_pred -cchHHHHHhcCchHHHHHHHhc----------CChH--------HHHHHHHHHhcCCC-ch-hh-hhhhHHHHHHHhhc
Q psy12638 183 -SRNAELMLKNRQLELLMIQAFT----------QKNI--------LLLKVIRNMSIHSN-VK-HY-FVDYIGDIANCVQK 240 (334)
Q Consensus 183 -~~n~~~i~~~~gl~~Lv~~l~~----------~~d~--------~~~k~l~nLa~~~~-~~-~~-f~~~i~~L~~~l~~ 240 (334)
......... .-++.+++.+.. ..|+ .++.++..++..-+ .. .. ....++.++..+..
T Consensus 539 ~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~ 617 (876)
T 1qgr_A 539 SAKDCYPAVQ-KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQS 617 (876)
T ss_dssp CCSTTHHHHH-HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC--
T ss_pred CchhhHHHHH-HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHh
Confidence 112222222 244455544432 2232 13456667766544 21 11 23445555565544
Q ss_pred CCccchhHHhhcHHHHHHHHHHhcCC--cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638 241 EKDENIKLECLGTLEVINFIGTAASD--PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH 309 (334)
Q Consensus 241 ~~~~~~~ve~Lg~leav~~lg~la~~--~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~ 309 (334)
..+.....+ .++.+++.++.. .+....+. .++|.+...|+.. +++++...++.+++.++..
T Consensus 618 ~~~~~~v~~-----~a~~~l~~l~~~~~~~~~~~~~--~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 618 TAGSGGVQE-----DALMAVSTLVEVLGGEFLKYME--AFKPFLGIGLKNY-AEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp ---CCHHHH-----HHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCccH-----HHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHcCc-chHHHHHHHHHHHHHHHHH
Confidence 321111111 245566666542 22222222 2678888888743 4556777778888888743
No 64
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.32 E-value=0.043 Score=51.33 Aligned_cols=158 Identities=18% Similarity=0.077 Sum_probs=109.8
Q ss_pred cchhHHHHHHHh-cccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhcc
Q psy12638 45 KSKREGRQDSRK-LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKII-KIGFLPKLVSLLE 122 (334)
Q Consensus 45 ~~~~~A~~~L~~-LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv-~~g~Ip~Lv~lL~ 122 (334)
+.++.|+.-|+. ++.+.+--.+....|++..|++.....+...+..++++|.+|-.+.+....++ ....|..+..++.
T Consensus 133 ~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~ 212 (339)
T 3dad_A 133 PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCA 212 (339)
T ss_dssp HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHc
Confidence 445578777877 77788888999999999999999999999999999999999999988888887 5678889999997
Q ss_pred CC--chHHHHHHHHHHccCChh-hhhHhhc--------cC--cHHHHHHHhcc--CCCCchHHHHHHHHHHH----ccCc
Q psy12638 123 EG--KHQKIILQLLYHLSIEDR-VKAMFAY--------TN--CMSLLMNMLLV--EQDDETDNVLVALCINL----ALNS 183 (334)
Q Consensus 123 ~~--~~~~~al~~L~~LS~~~~-~r~~i~~--------t~--~i~~Lv~LL~~--~~~~~~~~~~~~ll~nL----s~~~ 183 (334)
+. ...+.|+++|..+....+ +...+.+ .| -.+.||.+|.+ +.+.++...++++ +|- +-+.
T Consensus 213 s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL-IN~lL~~apd~ 291 (339)
T 3dad_A 213 SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL-INKTLAALPDQ 291 (339)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH-HHHHHHHCSSH
T ss_pred CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH-HHHHHhcCCCh
Confidence 43 346679999998866543 3322222 11 37789999962 3455555545444 332 2223
Q ss_pred chHHHHH---hcCchHHHHHHHh
Q psy12638 184 RNAELML---KNRQLELLMIQAF 203 (334)
Q Consensus 184 ~n~~~i~---~~~gl~~Lv~~l~ 203 (334)
+....++ +.-|+...+.+..
T Consensus 292 d~~~di~d~Le~~gi~~~i~r~l 314 (339)
T 3dad_A 292 DSFYDVTDALEQQGMEALVQRHL 314 (339)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHH
Confidence 3344444 2356655555433
No 65
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.23 E-value=0.046 Score=56.46 Aligned_cols=253 Identities=8% Similarity=0.031 Sum_probs=131.2
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhcc
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
+.|+.|..++..++.... ..+. ..+++.+...+.+++..+++.|+.+|.+++... +.-.... ..++|.++..++
T Consensus 343 ~~r~~a~~~l~~l~~~~~--~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~ 418 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK 418 (876)
T ss_dssp CHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCc--HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC
Confidence 445567777777664322 1222 246666777888889999999999999999753 2222222 447899999997
Q ss_pred CC--chHHHHHHHHHHccCChhh----hhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc------------
Q psy12638 123 EG--KHQKIILQLLYHLSIEDRV----KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR------------ 184 (334)
Q Consensus 123 ~~--~~~~~al~~L~~LS~~~~~----r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~------------ 184 (334)
++ ..|..|+.+|.+++..-.. ...+ ...++.|...+.+ ...++..+...+.++....+
T Consensus 419 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~ 494 (876)
T 1qgr_A 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEP 494 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 55 4688889989988764221 1111 2367778888764 25555555555556542211
Q ss_pred ---hHHHHHhcCchHHHHHHHhcCC--h-H---HHHHHHHHHhcCCCchhh--hhhhHHHHHHHhhcC--------Cccc
Q psy12638 185 ---NAELMLKNRQLELLMIQAFTQK--N-I---LLLKVIRNMSIHSNVKHY--FVDYIGDIANCVQKE--------KDEN 245 (334)
Q Consensus 185 ---n~~~i~~~~gl~~Lv~~l~~~~--d-~---~~~k~l~nLa~~~~~~~~--f~~~i~~L~~~l~~~--------~~~~ 245 (334)
...... ...++.|+..+.+.. + . .++.++..++...+.... ....++.++..+... +.++
T Consensus 495 ~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d 573 (876)
T 1qgr_A 495 ATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSD 573 (876)
T ss_dssp CCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTH
T ss_pred cchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 000001 123344444433221 1 1 245556666555433211 223333343333210 1111
Q ss_pred -hhHHhhcHHHHHHHHHHhcCCcc---hHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638 246 -IKLECLGTLEVINFIGTAASDPI---SAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH 309 (334)
Q Consensus 246 -~~ve~Lg~leav~~lg~la~~~~---~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~ 309 (334)
....-+.. .++.+++.++.... ....+ ..++|.+.++++..++...+..+++.+++.++..
T Consensus 574 ~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~ 638 (876)
T 1qgr_A 574 RIQFNDLQS-LLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV 638 (876)
T ss_dssp HHHHHHHHH-HHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence 00000000 13455666665322 22111 2467888888875532235666778888888753
No 66
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.03 E-value=0.036 Score=52.51 Aligned_cols=132 Identities=10% Similarity=0.005 Sum_probs=76.0
Q ss_pred chhHHHHHHHhcccc--hhhHHHhHhCCcchHHHhhccCC--ChhHHHHHHHHHHhhcCCh-hH-HHHHHhcCChHHHHH
Q psy12638 46 SKREGRQDSRKLSVY--HVNKEQMANLNLIEKLPRILMIE--DSNLQSSTLKLLFNLSFDT-NL-REKIIKIGFLPKLVS 119 (334)
Q Consensus 46 ~~~~A~~~L~~LSi~--~enk~~m~~~g~I~~Lv~LL~~~--~~~l~~~al~~L~NLS~d~-~~-r~~iv~~g~Ip~Lv~ 119 (334)
.|+-|+.+|..++.. ++. ..-.-..+++.+.+.+.++ +..++..|++++.++...- +. ...+...-+++.+.+
T Consensus 146 ~r~~al~~l~~l~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 224 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQ-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 224 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGG-TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchh-hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 455677777776542 111 0111124778888899888 7899999999999976431 11 111111124666666
Q ss_pred hccC--CchHHHHHHHHHHccCChh--hhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc
Q psy12638 120 LLEE--GKHQKIILQLLYHLSIEDR--VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA 180 (334)
Q Consensus 120 lL~~--~~~~~~al~~L~~LS~~~~--~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs 180 (334)
.+.+ +..+..++..|..+..... .+..+. .+.++.++..+. ..++.+...++..+.+++
T Consensus 225 ~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 225 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMK-SDIDEVALQGIEFWSNVC 287 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHH-CSSHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc-CCchHHHHHHHHHHHHHH
Confidence 6653 3467778888888765321 122221 156676666665 355666665555555553
No 67
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.00 E-value=0.031 Score=52.98 Aligned_cols=252 Identities=10% Similarity=0.025 Sum_probs=130.7
Q ss_pred CCcchHHHhhccCC--ChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhccCC----chHHHHHHHHHHccCC-
Q psy12638 70 LNLIEKLPRILMIE--DSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLLEEG----KHQKIILQLLYHLSIE- 140 (334)
Q Consensus 70 ~g~I~~Lv~LL~~~--~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL~~~----~~~~~al~~L~~LS~~- 140 (334)
.+.++.|++.+.++ +..+++.|+.+|..++.+ ++.-.... ..++|.+..+++++ ..|..|+..+.++...
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46888899999988 899999999999999853 22111111 23677888888644 4577888888876432
Q ss_pred hhh-hhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc-chHHHHHhcCchHHHHHHHhcCChHH---HHHHHH
Q psy12638 141 DRV-KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS-RNAELMLKNRQLELLMIQAFTQKNIL---LLKVIR 215 (334)
Q Consensus 141 ~~~-r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~-~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~ 215 (334)
++. .......-.++.+.+.+. +++..+...+...+..++... +.-......+.++.++.......+.+ ++..+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 111 000000113555555554 345566555555555553221 11000011023444444433333333 233444
Q ss_pred HHhcCC-------------------Cchhhh----hhhHHHHHHHhhcCCc----cchhHHhhcHHHHHHHHHHhcCCcc
Q psy12638 216 NMSIHS-------------------NVKHYF----VDYIGDIANCVQKEKD----ENIKLECLGTLEVINFIGTAASDPI 268 (334)
Q Consensus 216 nLa~~~-------------------~~~~~f----~~~i~~L~~~l~~~~~----~~~~ve~Lg~leav~~lg~la~~~~ 268 (334)
+++... .....+ ...++.+++.+.+.+. ++.-+.. .++.+++.++....
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~----~a~~~L~~l~~~~~ 360 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK----AAGVCLMLLATCCE 360 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH----HHHHHHHHHHHhcc
Confidence 444331 011111 2344555555554321 1111110 25566676665221
Q ss_pred hHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchh--hHHHhhcCCcHHHHHHhhhcCC
Q psy12638 269 SAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC--QNYLIKETDAPAYMIDLLNDGN 334 (334)
Q Consensus 269 ~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~--~~~i~~~~~i~~~Li~LL~d~n 334 (334)
...+ ..++|.+...++ ..+-.+...++++++.++..... -...+ ..+...++.+|+|.+
T Consensus 361 -~~~~--~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~ 421 (462)
T 1ibr_B 361 -DDIV--PHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPS 421 (462)
T ss_dssp -TTHH--HHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSC
T ss_pred -HHHH--HHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCC
Confidence 1111 135666666775 33456777889999999864331 11112 346668999998864
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.61 E-value=0.018 Score=45.72 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=62.5
Q ss_pred chHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhcc
Q psy12638 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYT 150 (334)
Q Consensus 73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t 150 (334)
++.|+++|.+++..++..|+.+|.++.. .+.+|.|+++|+ ++..+..|+..|.++.. .
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~ 103 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------E 103 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------H
Confidence 6999999999999999999999999873 235899999995 45678888888888763 2
Q ss_pred CcHHHHHHHhccCCCCchHHHH
Q psy12638 151 NCMSLLMNMLLVEQDDETDNVL 172 (334)
Q Consensus 151 ~~i~~Lv~LL~~~~~~~~~~~~ 172 (334)
++++.|.+++. .++..+...+
T Consensus 104 ~a~~~L~~~l~-d~~~~vr~~A 124 (131)
T 1te4_A 104 RVRAAMEKLAE-TGTGFARKVA 124 (131)
T ss_dssp HHHHHHHHHTT-SCCTHHHHHH
T ss_pred HHHHHHHHHHh-CCCHHHHHHH
Confidence 37899999996 4566665544
No 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.30 E-value=0.0074 Score=48.09 Aligned_cols=102 Identities=8% Similarity=-0.005 Sum_probs=66.9
Q ss_pred CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHh
Q psy12638 70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMF 147 (334)
Q Consensus 70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i 147 (334)
...++.+..+|.+++..++..|+..|.++... .+|.|+++|+++ ..+..|+..|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 45678899999999999999999888877531 379999999654 568888888888763
Q ss_pred hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHh
Q psy12638 148 AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAF 203 (334)
Q Consensus 148 ~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~ 203 (334)
.++++.|++++. .++..+...++..+.++. + .+.++.|+..+.
T Consensus 72 --~~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~-~---------~~a~~~L~~~l~ 114 (131)
T 1te4_A 72 --ERAVEPLIKLLE-DDSGFVRSGAARSLEQIG-G---------ERVRAAMEKLAE 114 (131)
T ss_dssp --HHHHHHHHHHHH-HCCTHHHHHHHHHHHHHC-S---------HHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC-c---------HHHHHHHHHHHh
Confidence 236899999996 467777776666666653 1 134666666653
No 70
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.04 E-value=0.066 Score=58.12 Aligned_cols=220 Identities=12% Similarity=0.131 Sum_probs=122.3
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhh----
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVK---- 144 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r---- 144 (334)
.+++.|++.+.+++..++..|+.+|.+++..-.. ..+ ..++|.|...+.++ ..|..|...|..++..-...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~ 124 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS 124 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccccc
Confidence 5678899999999999999999999999864211 111 23567788777543 45777777777765432111
Q ss_pred --hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhc---CChHH----HHHHHH
Q psy12638 145 --AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFT---QKNIL----LLKVIR 215 (334)
Q Consensus 145 --~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~---~~d~~----~~k~l~ 215 (334)
..-.....+|.|.+.+.+.++..+...++..+..+..+... .+. ..++.++..+.. ..++. +++++.
T Consensus 125 ~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~--~l~--~~~~~ll~~l~~~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 125 ALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--LLV--NFHPSILTCLLPQLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp CTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--SCT--TTHHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh--HHH--HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 00112347888999886434455555566666665421110 000 122333333322 23332 355677
Q ss_pred HHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhh--CCchHHHHHHhccccCC
Q psy12638 216 NMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCK--NSTVDLLINLLKEMQED 292 (334)
Q Consensus 216 nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~--~g~I~~Lv~LL~~~~~d 292 (334)
.++...+.. .|...++.++..+...+...... .++.++|.++.. +. .+.. ..++|.+.+.++ .++
T Consensus 201 ~l~~~~~~~-~~~~~l~~l~~~L~~~~~~~~r~------~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~--d~~ 268 (1230)
T 1u6g_C 201 HLVMSCGNI-VFVDLIEHLLSELSKNDSMSTTR------TYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCN--VDD 268 (1230)
T ss_dssp HHTTTC-----CTTHHHHHHHHHHHTCSSCSCT------THHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHS--SCC
T ss_pred HHHHhcCHH-HHHHHHHHHHHHhccCCchhHHH------HHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhc--CCC
Confidence 777654322 25566777887776543211110 133444555431 21 2221 257888888886 345
Q ss_pred chHHHHHHHHHHHHHcC
Q psy12638 293 DEIVLQILYVFYQICRH 309 (334)
Q Consensus 293 de~vlqi~~~l~~l~~~ 309 (334)
+++--.++.+++.++..
T Consensus 269 ~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 269 DELREYCIQAFESFVRR 285 (1230)
T ss_dssp TTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666677788888754
No 71
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.70 E-value=0.15 Score=52.51 Aligned_cols=226 Identities=15% Similarity=0.128 Sum_probs=120.7
Q ss_pred CcchHHHhhccCCCh-hHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhh
Q psy12638 71 NLIEKLPRILMIEDS-NLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKA 145 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~-~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~ 145 (334)
.+++.+.+++.+.+. .+++.++.++.+++... +...-+ ..++|.+...++ ++..+..++.++..++..-. .
T Consensus 597 ~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~--~ 672 (861)
T 2bpt_A 597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE--E 672 (861)
T ss_dssp HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG--G
T ss_pred HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc--h
Confidence 355667777887777 88999999999988542 233222 237888888885 44567778888877764321 1
Q ss_pred Hhhc--cCcHHHHHHHhccCC-CCchHHHHHHHHHHHccCc-chHHHHHhcCchHHHHHHHhcCC----hH---------
Q psy12638 146 MFAY--TNCMSLLMNMLLVEQ-DDETDNVLVALCINLALNS-RNAELMLKNRQLELLMIQAFTQK----NI--------- 208 (334)
Q Consensus 146 ~i~~--t~~i~~Lv~LL~~~~-~~~~~~~~~~ll~nLs~~~-~n~~~i~~~~gl~~Lv~~l~~~~----d~--------- 208 (334)
.|.. .+.++.+++.+.+.. +.++...++..+..++... +.-..... ..+++++..+.... +.
T Consensus 673 ~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~~d~d~~~~~~~vr 751 (861)
T 2bpt_A 673 DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN-DIMALCVAAQNTKPENGTLEALDYQIKVL 751 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCCCSSSSHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 2211 346777778886532 2556555555554443321 12222222 24555555543221 11
Q ss_pred -HHHHHHHHHhcCCC-chhhhhhhHHHHHHHhhcC--Cc----cchhHHhhcHHHHHHHHHHhcC---CcchHHHhhhCC
Q psy12638 209 -LLLKVIRNMSIHSN-VKHYFVDYIGDIANCVQKE--KD----ENIKLECLGTLEVINFIGTAAS---DPISAEHFCKNS 277 (334)
Q Consensus 209 -~~~k~l~nLa~~~~-~~~~f~~~i~~L~~~l~~~--~~----~~~~ve~Lg~leav~~lg~la~---~~~~~~~l~~~g 277 (334)
..++++..++..-. ....|.++++.++..+... +. .+.+.. .|+.++|.++. .++.. .+....
T Consensus 752 ~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~-----~a~~~l~~l~~~~~g~~~~-~~~~~~ 825 (861)
T 2bpt_A 752 EAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSR-----AAVGLIGDIAAMFPDGSIK-QFYGQD 825 (861)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHH-----HHHHHHHHHHHHCTTSTTG-GGTTCH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHH-----HHHHHHHHHHHHcCCchHH-HHHhcH
Confidence 12334444432211 1233666777766655322 10 111111 25566677765 22322 333335
Q ss_pred chHHHHHHhccccCC-chHHHHHHHHHHHHH
Q psy12638 278 TVDLLINLLKEMQED-DEIVLQILYVFYQIC 307 (334)
Q Consensus 278 ~I~~Lv~LL~~~~~d-de~vlqi~~~l~~l~ 307 (334)
++|.|++.++..++. +...-.+.++.+.+.
T Consensus 826 ~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 826 WVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 788888888853343 445555677777664
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=94.66 E-value=0.35 Score=45.68 Aligned_cols=206 Identities=10% Similarity=0.058 Sum_probs=82.1
Q ss_pred chHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhcc
Q psy12638 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYT 150 (334)
Q Consensus 73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t 150 (334)
+..+.+=+.++++-++-.|+++|+++.... .-+ .+.+.+.+.|. +|-.+..|+-..++|..+.. +.+ +
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v-~- 175 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDST-MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVV-K- 175 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHH-H-
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHH-H-
Confidence 344555556666666666666666665422 211 12344445553 34455555555666644321 111 1
Q ss_pred CcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCC--hHHH-HHHHHHHhcCCCch-hh
Q psy12638 151 NCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQK--NILL-LKVIRNMSIHSNVK-HY 226 (334)
Q Consensus 151 ~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~--d~~~-~k~l~nLa~~~~~~-~~ 226 (334)
+.++.+-+++. +.++.+.-.++++++.+...++ . .+..|+..+.++. +|+. ..++|-++..-+.. ..
T Consensus 176 ~~~~~l~~ll~-d~n~~V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~ 246 (355)
T 3tjz_B 176 RWVNEAQEAAS-SDNIMVQYHALGLLYHVRKNDR--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS 246 (355)
T ss_dssp TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHHHhc-CCCccHHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh
Confidence 34556666664 2444444445555555543221 1 2223333333321 3442 33444333221111 00
Q ss_pred -hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHH
Q psy12638 227 -FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQ 305 (334)
Q Consensus 227 -f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~ 305 (334)
-.+++..+...+ ++.+...+.| |+.++-.+...+. ..+ ..++..|..+|. +.|.++..-++..+..
T Consensus 247 ~~~~~~~~l~~~L-~~~~~aVvyE------a~k~I~~l~~~~~--~~~--~~a~~~L~~fLs--s~d~niryvaLr~L~~ 313 (355)
T 3tjz_B 247 RDSPLFDFIESCL-RNKHEMVVYE------AASAIVNLPGCSA--KEL--APAVSVLQLFCS--SPKAALRYAAVRTLNK 313 (355)
T ss_dssp ----------CCC-CCSSHHHHHH------HHHHHTC---------------CCCTHHHHHH--SSSSSSHHHHHHCC--
T ss_pred hHHHHHHHHHHHH-cCCChHHHHH------HHHHHHhccCCCH--HHH--HHHHHHHHHHHc--CCCchHHHHHHHHHHH
Confidence 001111111111 2222233333 3444433333111 222 224677888886 4556787777777777
Q ss_pred HHcCc
Q psy12638 306 ICRHA 310 (334)
Q Consensus 306 l~~~~ 310 (334)
++...
T Consensus 314 l~~~~ 318 (355)
T 3tjz_B 314 VAMKH 318 (355)
T ss_dssp -----
T ss_pred HHHHC
Confidence 76433
No 73
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.00 E-value=4.2 Score=43.91 Aligned_cols=171 Identities=8% Similarity=-0.012 Sum_probs=89.3
Q ss_pred cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-----------------hHHHH
Q psy12638 45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-----------------NLREK 107 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-----------------~~r~~ 107 (334)
+.|+.|...+..++........-.-..++|.+++.+...++.++..++.+|..+.... .....
T Consensus 348 ~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (1230)
T 1u6g_C 348 KVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM 427 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHH
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHH
Confidence 3467777777777642211112222456788888888888999999998877665310 00111
Q ss_pred HH--hcCChHHHHHhccCCc--hHHHHHHHHHHccCChhhhhHhhc--cCcHHHHHHHhccCCC-CchHHHHHHHHHHHc
Q psy12638 108 II--KIGFLPKLVSLLEEGK--HQKIILQLLYHLSIEDRVKAMFAY--TNCMSLLMNMLLVEQD-DETDNVLVALCINLA 180 (334)
Q Consensus 108 iv--~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~~~r~~i~~--t~~i~~Lv~LL~~~~~-~~~~~~~~~ll~nLs 180 (334)
+. -..++|.+.+.++++. .+..++..|..+... ....+.. ...+|.+.+.|..... ..+..+++..+..+.
T Consensus 428 ~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~--~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~ 505 (1230)
T 1u6g_C 428 LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV--LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL 505 (1230)
T ss_dssp HHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--STTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--chhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHH
Confidence 11 1223444445576543 566677777777543 1121211 2357778888864221 245555555555542
Q ss_pred --cCcchHHHHHhcCchHHHHHHHhcCChHH---HHHHHHHHh
Q psy12638 181 --LNSRNAELMLKNRQLELLMIQAFTQKNIL---LLKVIRNMS 218 (334)
Q Consensus 181 --~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa 218 (334)
..++.-..... .-++.++..+.+.+..+ ++.++..++
T Consensus 506 ~~~~~~~~~~~l~-~llp~L~~~l~d~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 506 CNHSPQVFHPHVQ-ALVPPVVACVGDPFYKITSEALLVTQQLV 547 (1230)
T ss_dssp HSSCGGGGHHHHT-TTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHhHHH-HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 23332222332 46777776655443322 344444444
No 74
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=92.95 E-value=1.1 Score=40.23 Aligned_cols=143 Identities=12% Similarity=0.100 Sum_probs=113.4
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCC-----hhHHHHHHHHHHhhcC--ChhHHHHHHhcCChHHHHHhc
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIED-----SNLQSSTLKLLFNLSF--DTNLREKIIKIGFLPKLVSLL 121 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~-----~~l~~~al~~L~NLS~--d~~~r~~iv~~g~Ip~Lv~lL 121 (334)
.|+..|+-.+.+++.|....++.+.-.|..+|...+ +-++-.+++.++-|.. |+++-.-+.+.++||...+.+
T Consensus 75 naLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 75 NALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 677788888889999999999999999999986654 3578888888888885 468888888999999999999
Q ss_pred --cCCchHHHHHHHHHHccCChhhhhHhhccC--------cHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHh
Q psy12638 122 --EEGKHQKIILQLLYHLSIEDRVKAMFAYTN--------CMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK 191 (334)
Q Consensus 122 --~~~~~~~~al~~L~~LS~~~~~r~~i~~t~--------~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~ 191 (334)
+++-.+-.|..++..+=.||.+..-+..|. .+..+|.-+...+...+-+..+..-.-|+.+++.++++..
T Consensus 155 e~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 155 ESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 455668889999999988888887776653 3444555555556667666666666688999999888875
No 75
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=92.24 E-value=0.4 Score=43.12 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=98.2
Q ss_pred cCcchhHHHHHHHhcccchhhHHHh-----HhCCcchHHHh-------hccC-----CChhHHHHHHHHHHhhcCChhHH
Q psy12638 43 VPKSKREGRQDSRKLSVYHVNKEQM-----ANLNLIEKLPR-------ILMI-----EDSNLQSSTLKLLFNLSFDTNLR 105 (334)
Q Consensus 43 ~~~~~~~A~~~L~~LSi~~enk~~m-----~~~g~I~~Lv~-------LL~~-----~~~~l~~~al~~L~NLS~d~~~r 105 (334)
.|+.|++|+.-|.| ..|+-..+ .+-|.+..|++ .+.. ....-.++|+.+|--++.|++.|
T Consensus 14 ~p~~Re~AL~eLsk---~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr 90 (268)
T 2fv2_A 14 SPETRENALLELSK---KRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETR 90 (268)
T ss_dssp STTTHHHHHHHHHH---HTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTH
T ss_pred CchhHHHHHHHHHH---hhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchh
Confidence 56778888777765 33322222 23577776644 3322 23356899999999999999999
Q ss_pred HHHHhcCChHHHHHhccCC-------chHHHHHHHHHHccCC--hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHH-H
Q psy12638 106 EKIIKIGFLPKLVSLLEEG-------KHQKIILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA-L 175 (334)
Q Consensus 106 ~~iv~~g~Ip~Lv~lL~~~-------~~~~~al~~L~~LS~~--~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~-l 175 (334)
..+.++++.--|-++|+.. -.|-.++++...|... .+.-.-+-+|+.||...+.+..| ++..|.++. +
T Consensus 91 ~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G--selSKtvAtfI 168 (268)
T 2fv2_A 91 SAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG--SELSKTVATFI 168 (268)
T ss_dssp HHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHH
T ss_pred hHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc--cHHHHHHHHHH
Confidence 9999999988999999522 1356688888888654 33334444589999999999874 455565543 3
Q ss_pred HHHHccCcchHHHHHh
Q psy12638 176 CINLALNSRNAELMLK 191 (334)
Q Consensus 176 l~nLs~~~~n~~~i~~ 191 (334)
+..+-.|+..-.-+++
T Consensus 169 lqKIL~dd~GL~YiC~ 184 (268)
T 2fv2_A 169 LQKILLDDTGLAYICQ 184 (268)
T ss_dssp HHHHHHSHHHHHHHTS
T ss_pred HHHHhccchhHHHHHc
Confidence 4466667776666664
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.36 E-value=0.48 Score=41.23 Aligned_cols=121 Identities=10% Similarity=-0.009 Sum_probs=77.7
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCch
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKH 126 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~ 126 (334)
.|...+..++........-.-..++|.+++.+.+++..++..|..+|.++....... .++|.+...++ ++..
T Consensus 76 ~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~~~~~~v 149 (242)
T 2qk2_A 76 MAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE------AQQESIVESLSNKNPSV 149 (242)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHcCCChHH
Confidence 555566555532111111122347888999999999999999999999998754322 35778888885 4567
Q ss_pred HHHHHHHHHHc-cCCh-h--hhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHH
Q psy12638 127 QKIILQLLYHL-SIED-R--VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178 (334)
Q Consensus 127 ~~~al~~L~~L-S~~~-~--~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~n 178 (334)
+..++.+|..+ +... + ....+ ...+|.|+.++. .+..+++..+...+..
T Consensus 150 r~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~-D~~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 150 KSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLN-EPDPTVRDSSAEALGT 202 (242)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhc-CCChHHHHHHHHHHHH
Confidence 88899999885 4432 1 12222 347888999985 4566666655444443
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=90.03 E-value=0.28 Score=42.75 Aligned_cols=125 Identities=10% Similarity=0.056 Sum_probs=81.0
Q ss_pred cchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhcc-CCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHh
Q psy12638 45 KSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILM-IEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSL 120 (334)
Q Consensus 45 ~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~-~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~l 120 (334)
+.|+.|+..|..+... ++....- -..+++.|.+++. ..+..++..|+.+|.-|+..- .... .-..++|.+.+.
T Consensus 30 ~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~--~~~~ilp~ll~~ 106 (242)
T 2qk2_A 30 TLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN--YASACVPSLLEK 106 (242)
T ss_dssp HHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHH
Confidence 3455666666665432 1100000 0245677888884 889999999999999999542 2222 224478999999
Q ss_pred ccCC--chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638 121 LEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL 179 (334)
Q Consensus 121 L~~~--~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL 179 (334)
++++ ..+..|..+|..+...... ...+|.+...+.+ .+..++.+++..+..+
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSN-KNPSVKSETALFIARA 160 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcC-CChHHHHHHHHHHHHH
Confidence 9765 4678888888888654321 2367888888875 5667777777766664
No 78
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=89.88 E-value=5.6 Score=35.43 Aligned_cols=179 Identities=16% Similarity=0.111 Sum_probs=111.2
Q ss_pred cccccccccchhhhcccCCcceeecccCc----chhHHHHHHHhcccch-hhHHHhHhCCcchHHHhhccCCChhHHHHH
Q psy12638 17 DTYPTRNAGVKAQRFDRGNCNCYGLIVPK----SKREGRQDSRKLSVYH-VNKEQMANLNLIEKLPRILMIEDSNLQSST 91 (334)
Q Consensus 17 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~~~~A~~~L~~LSi~~-enk~~m~~~g~I~~Lv~LL~~~~~~l~~~a 91 (334)
-.|-++.+.=.+| ...+-+..+..+... -|..|+..|+++=... .-...+.=....+.+++++.++|+.+--.|
T Consensus 17 ~sWkiK~a~ela~-~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A 95 (265)
T 3b2a_A 17 LSWQILDAVSLAL-EDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKA 95 (265)
T ss_dssp HTTCHHHHHHHHH-HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred HHhhHHHHHHHHH-hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 4576666654555 223334444444432 2446777776653321 112222234678889999999999999999
Q ss_pred HHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCch
Q psy12638 92 LKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDET 168 (334)
Q Consensus 92 l~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~ 168 (334)
+++|.-|-.+ |=......+ ++..|+.++. ++-.+..++-.|..|..-...+. .+..+.+++ .+.+.++
T Consensus 96 ~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl-~Skd~~v 166 (265)
T 3b2a_A 96 LRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKL------VRTYINELV-VSPDLYT 166 (265)
T ss_dssp HHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHH-TCSSHHH
T ss_pred HHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHH------HHHHHHHHH-hCCChhH
Confidence 9999998876 333333332 3456777775 44568889998988855443333 345688888 5678888
Q ss_pred HHHHHHHHHHHcc---CcchHHHHHhcCchHHHHHHHhcCChHHHH
Q psy12638 169 DNVLVALCINLAL---NSRNAELMLKNRQLELLMIQAFTQKNILLL 211 (334)
Q Consensus 169 ~~~~~~ll~nLs~---~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~ 211 (334)
+...++++.|.+. |++....+.+ +++. +++..|+.+.
T Consensus 167 K~agl~~L~eia~~S~D~~i~~~I~~--eI~e----lL~~eD~~l~ 206 (265)
T 3b2a_A 167 KVAGFCLFLNMLNSSADSGHLTLILD--EIPS----LLQNDNEFIV 206 (265)
T ss_dssp HHHHHHHHHHHGGGCSSCCCGGGTTT--THHH----HHTCSCHHHH
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHH--HHHH----HHcCCCHHHH
Confidence 7777778888854 5566666654 3333 3455566543
No 79
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=89.76 E-value=0.89 Score=42.84 Aligned_cols=170 Identities=9% Similarity=0.077 Sum_probs=89.3
Q ss_pred HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC--Cc
Q psy12638 49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE--GK 125 (334)
Q Consensus 49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~--~~ 125 (334)
-|+++|.++.... |. ..+.+++-+.+.++++-++..|+-+.+.|..+ ++ +++ ++++.+-+++.+ +.
T Consensus 123 lALRtL~~I~~~~-----m~-~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe----~v~-~~~~~l~~ll~d~n~~ 191 (355)
T 3tjz_B 123 PAVRALCQITDST-----ML-QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD----VVK-RWVNEAQEAASSDNIM 191 (355)
T ss_dssp HHHHHHHHHCCTT-----TH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH----HHH-TTHHHHHHHTTCSSHH
T ss_pred HHHHHHhcCCCHH-----HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH----HHH-HHHHHHHHHhcCCCcc
Confidence 6777777664321 11 13555677788899999999999999999865 34 343 699999999954 45
Q ss_pred hHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCC-CchHH-HHHHHHHHHccC--cchHHHHHhcCchHHHHHH
Q psy12638 126 HQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQD-DETDN-VLVALCINLALN--SRNAELMLKNRQLELLMIQ 201 (334)
Q Consensus 126 ~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~-~~~~~-~~~~ll~nLs~~--~~n~~~i~~~~gl~~Lv~~ 201 (334)
.+..|+++|+++...+. . ++.+|+.-+..+.- .+... ..+..+..+... ++.... -++.+...
T Consensus 192 V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~-----~~~~l~~~ 258 (355)
T 3tjz_B 192 VQYHALGLLYHVRKNDR--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSP-----LFDFIESC 258 (355)
T ss_dssp HHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CC
T ss_pred HHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHH-----HHHHHHHH
Confidence 67889999999987552 1 45566666654321 22211 122222122111 122222 22333334
Q ss_pred HhcCChHHHHHHHHHHhcCCCc-hhhhhhhHHHHHHHhhcCC
Q psy12638 202 AFTQKNILLLKVIRNMSIHSNV-KHYFVDYIGDIANCVQKEK 242 (334)
Q Consensus 202 l~~~~d~~~~k~l~nLa~~~~~-~~~f~~~i~~L~~~l~~~~ 242 (334)
+.+.++.+++.+++.+..-... ...+..++..|..++++.+
T Consensus 259 L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d 300 (355)
T 3tjz_B 259 LRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPK 300 (355)
T ss_dssp CCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSS
T ss_pred HcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCC
Confidence 4455677777777766554332 1223344444545555444
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=89.52 E-value=3.7 Score=36.58 Aligned_cols=141 Identities=11% Similarity=0.130 Sum_probs=91.0
Q ss_pred cHHHHHHHhccCCCCchHHHHHHHHHHHccC--cchHHHHHhcCchHHHHHHHhcCChHHH---HHHHHHHhcCCC-chh
Q psy12638 152 CMSLLMNMLLVEQDDETDNVLVALCINLALN--SRNAELMLKNRQLELLMIQAFTQKNILL---LKVIRNMSIHSN-VKH 225 (334)
Q Consensus 152 ~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~--~~n~~~i~~~~gl~~Lv~~l~~~~d~~~---~k~l~nLa~~~~-~~~ 225 (334)
.+..|..+|. ..++.++..++.++-.+-.. ..-+..+.+ ..++.++..+.+.++.+. ++|++.+=.+.+ +.+
T Consensus 34 ~l~~L~~LL~-dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAG-EDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 5566788885 45666666666666565322 333444444 489999988877777775 556776666655 455
Q ss_pred hhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHH
Q psy12638 226 YFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQ 305 (334)
Q Consensus 226 ~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~ 305 (334)
.|...+..|.++++++. +.+.+ +++..+|.+.--.... +++.++.+|+ ++.|.++....+.+|-.
T Consensus 112 ~y~Kl~~aL~dlik~~~--~il~~-----eaae~Lgklkv~~~~~------~V~~~l~sLl--~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPD--DMMRI-----ETIDVLSKLQPLEDSK------LVRTYINELV--VSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp HHHHHHHHHHHHTTSCC--HHHHH-----HHHHHHHHCCBSCCCH------HHHHHHHHHH--TCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC--chHHH-----HHHHHhCcCCcccchH------HHHHHHHHHH--hCCChhHHHHHHHHHHH
Confidence 58888888888887443 33333 4777778882211111 2678888888 45666777777888888
Q ss_pred HHcC
Q psy12638 306 ICRH 309 (334)
Q Consensus 306 l~~~ 309 (334)
++..
T Consensus 177 ia~~ 180 (265)
T 3b2a_A 177 MLNS 180 (265)
T ss_dssp HGGG
T ss_pred hhcc
Confidence 8743
No 81
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=87.67 E-value=6.3 Score=36.13 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=71.1
Q ss_pred CChhHHHHHHHHHHhhcCChhHHHHHHhc--CChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhh-ccCcHHHHH
Q psy12638 83 EDSNLQSSTLKLLFNLSFDTNLREKIIKI--GFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFA-YTNCMSLLM 157 (334)
Q Consensus 83 ~~~~l~~~al~~L~NLS~d~~~r~~iv~~--g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~-~t~~i~~Lv 157 (334)
..+.-+-.++++++|+-.++..|..|.+. .+++.+..++. +...+-.++.+++|+|...-....+. ...++..+.
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~ 239 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIS 239 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 34556889999999999999998888752 34444554443 33467778899999998531111111 111444555
Q ss_pred HHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhc
Q psy12638 158 NMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFT 204 (334)
Q Consensus 158 ~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~ 204 (334)
.++....+.+..-..+..+-||...+.....+++.=++...++.+.+
T Consensus 240 ~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~ 286 (304)
T 3ebb_A 240 TILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS 286 (304)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred HHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh
Confidence 66654334443333444445776655556666655455555444443
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.20 E-value=35 Score=36.17 Aligned_cols=11 Identities=0% Similarity=-0.061 Sum_probs=5.9
Q ss_pred cHHHHHHHhcc
Q psy12638 152 CMSLLMNMLLV 162 (334)
Q Consensus 152 ~i~~Lv~LL~~ 162 (334)
++..|+..+.+
T Consensus 508 ai~~LL~~~~e 518 (963)
T 4ady_A 508 AIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 45556665544
No 83
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=84.19 E-value=5.4 Score=36.54 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=66.9
Q ss_pred hhHHHHHHHhcccchhhHHHhHhC--CcchHHHhhccCCChhHHHHHHHHHHhhcCCh------hHHHHHHhcCChHHHH
Q psy12638 47 KREGRQDSRKLSVYHVNKEQMANL--NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT------NLREKIIKIGFLPKLV 118 (334)
Q Consensus 47 ~~~A~~~L~~LSi~~enk~~m~~~--g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~------~~r~~iv~~g~Ip~Lv 118 (334)
+--+++++.|+=..+..+..|.+. .+++.+...+.++++.++-.+..+++|+|... +.+.+ +...+.
T Consensus 165 ~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~ 239 (304)
T 3ebb_A 165 QLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLIS 239 (304)
T ss_dssp HHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHH
Confidence 336788888887777777777653 45666667777789999999999999999732 11111 233333
Q ss_pred Hhc---cCCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHH
Q psy12638 119 SLL---EEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMN 158 (334)
Q Consensus 119 ~lL---~~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~ 158 (334)
.++ ++++....++..|.+|...+.....+++.=++...++
T Consensus 240 ~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~ 282 (304)
T 3ebb_A 240 TILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIK 282 (304)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGG
T ss_pred HHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHH
Confidence 444 3555666677777777654444444444433443333
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=79.31 E-value=14 Score=31.86 Aligned_cols=83 Identities=13% Similarity=0.251 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccc
Q psy12638 211 LKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEM 289 (334)
Q Consensus 211 ~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~ 289 (334)
+.++.+++..-+.. +.+.+.+|+.+++.++..+...| .+.++|++|. .|+-.. ++||.|-.=++.+
T Consensus 53 l~vi~~i~~~~~el--~epl~~kL~vm~~ksEaIpltqe------Ia~a~G~la~i~Pe~v~-----~vVp~lfanyrig 119 (253)
T 2db0_A 53 ISIIMVIAKTREDL--YEPMLKKLFSLLKKSEAIPLTQE------IAKAFGQMAKEKPELVK-----SMIPVLFANYRIG 119 (253)
T ss_dssp HHHHHHHHTTCGGG--HHHHHHHHHHHHHHCCSHHHHHH------HHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhHHH--HHHHHHHHHHHHhhcccCchHHH------HHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcC
Confidence 33455555443332 34677778887777665444333 3556677776 555221 2455555555543
Q ss_pred cCCchHHHHHHHHHHHHHc
Q psy12638 290 QEDDEIVLQILYVFYQICR 308 (334)
Q Consensus 290 ~~dde~vlqi~~~l~~l~~ 308 (334)
|+.+..-+.|+++.+++
T Consensus 120 --d~kikIn~~yaLeeIar 136 (253)
T 2db0_A 120 --DEKTKINVSYALEEIAK 136 (253)
T ss_dssp --SHHHHHHHHHHHHHHHH
T ss_pred --CccceecHHHHHHHHHH
Confidence 66666666666666653
No 85
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=73.25 E-value=40 Score=35.23 Aligned_cols=129 Identities=9% Similarity=0.068 Sum_probs=69.0
Q ss_pred chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhcc------CCChhHHHHHHHHHHhhcCChhHHHHHHhc-----CCh
Q psy12638 46 SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILM------IEDSNLQSSTLKLLFNLSFDTNLREKIIKI-----GFL 114 (334)
Q Consensus 46 ~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~------~~~~~l~~~al~~L~NLS~d~~~r~~iv~~-----g~I 114 (334)
-|+-|..+|..|+.... ..+. .-+++.+.+.+. +.+-..++.|+.++..++.....+..-.+. .+.
T Consensus 377 ~R~aa~~~L~~l~~~~~--~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE--VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp HHHHHHHHHHHHHHHCH--HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred cHHHHHHHHHHHHHHcc--hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 45677888888876433 2221 112333334444 445578899999999997532111100000 222
Q ss_pred HHHH----HhccC-----CchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc
Q psy12638 115 PKLV----SLLEE-----GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL 181 (334)
Q Consensus 115 p~Lv----~lL~~-----~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~ 181 (334)
|.++ +.|++ |..|..|+.++...|..- .+..+ ...++.++..|.+ ++..++..+...+.++..
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l--~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL--IELMPILATFLQT-DEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH--HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH--HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHh
Confidence 3222 22333 346888899999887652 12222 2357778877763 445566656566677765
No 86
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=73.23 E-value=20 Score=35.12 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=24.2
Q ss_pred hhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhH
Q psy12638 62 VNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNL 104 (334)
Q Consensus 62 enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~ 104 (334)
.-|.+...+..|+...+-+ +++++.|+.+++-|+.|.+.
T Consensus 41 ~~k~K~LaaQ~I~kffk~F----P~l~~~Ai~a~lDLcEDed~ 79 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHF----PELADSAINAQLDLCEDEDV 79 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGC----GGGHHHHHHHHHHHHTCSSH
T ss_pred CHHHHHHHHHHHHHHHhhC----hhhHHHHHHHHHHHHhcccH
Confidence 3555556666666655555 45677777777777766543
No 87
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=67.94 E-value=1.3e+02 Score=31.93 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=68.8
Q ss_pred hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCChHHH----HHHHHHHhcCCC
Q psy12638 148 AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQKNILL----LKVIRNMSIHSN 222 (334)
Q Consensus 148 ~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~d~~~----~k~l~nLa~~~~ 222 (334)
++.+.++.+++.|....++-++. ..+++..|+.. ..|.. .++.|+..+.+..+..+ +-.+.-++..++
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRy-gaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRY-GGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHH-HHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred CChHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 44558888989887654444433 33444444332 33333 34445666554433322 222333333332
Q ss_pred chhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHH
Q psy12638 223 VKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILY 301 (334)
Q Consensus 223 ~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~ 301 (334)
+.+++++..+.+.. +..+-. .++.++|.++. ++... +|..|..++. -.|+++-..++.
T Consensus 611 ------e~v~rlv~~L~~~~--d~~VR~----gAalALGli~aGn~~~~-------aid~L~~L~~--D~d~~Vrq~Ai~ 669 (963)
T 4ady_A 611 ------TTVPRIVQLLSKSH--NAHVRC----GTAFALGIACAGKGLQS-------AIDVLDPLTK--DPVDFVRQAAMI 669 (963)
T ss_dssp ------SSHHHHTTTGGGCS--CHHHHH----HHHHHHHHHTSSSCCHH-------HHHHHHHHHT--CSSHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhcC--CHHHHH----HHHHHHHHhccCCCcHH-------HHHHHHHHcc--CCCHHHHHHHHH
Confidence 23455555444333 333333 47788998865 34311 4566666653 234445555688
Q ss_pred HHHHHHcCc
Q psy12638 302 VFYQICRHA 310 (334)
Q Consensus 302 ~l~~l~~~~ 310 (334)
+++.+....
T Consensus 670 ALG~Ig~gt 678 (963)
T 4ady_A 670 ALSMILIQQ 678 (963)
T ss_dssp HHHHHSTTC
T ss_pred HHHHHhcCC
Confidence 888887443
No 88
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=67.14 E-value=55 Score=30.98 Aligned_cols=119 Identities=14% Similarity=0.148 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccC
Q psy12638 86 NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVE 163 (334)
Q Consensus 86 ~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~ 163 (334)
++.-.+..+|.-|-+|++.-.-+|+.++|..+...++-| +.-....++|.+.|..... ...--.+.+|.++..+...
T Consensus 258 QVvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL-~~t~L~e~LPFi~~~i~~h 336 (619)
T 3c2g_A 258 QVIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKAL-AKTPLENILPFLLRLIEIH 336 (619)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGG-GTSCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHH-hhccccccchHHHHHhccC
Confidence 455667777777788889999999999999999999754 4566788999999876532 1122234789999999865
Q ss_pred CCCchHHHHHHHHHHHccCcchHHHHH-hcCchHHHHHHHhcC
Q psy12638 164 QDDETDNVLVALCINLALNSRNAELML-KNRQLELLMIQAFTQ 205 (334)
Q Consensus 164 ~~~~~~~~~~~ll~nLs~~~~n~~~i~-~~~gl~~Lv~~l~~~ 205 (334)
+++++.-.-...+.|...+.+....++ ..|+++.|-+...+.
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 665654444478899987777766655 667888777766554
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=66.11 E-value=1.3e+02 Score=31.13 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=46.7
Q ss_pred cCCChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhccCCchHHHHHHHHHHccCChhhhhHh
Q psy12638 81 MIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMF 147 (334)
Q Consensus 81 ~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~~~r~~i 147 (334)
.++++.++..++.++..++..- +.. +.. ..++|.++..|+++..+..|+..|..++. +.+..+
T Consensus 499 ~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~~~V~~~A~~al~~l~~--~~~~~l 562 (963)
T 2x19_B 499 SISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGNPELSVSSVSTLKKICR--ECKYDL 562 (963)
T ss_dssp CCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTCGGGHHHHHHHHHHHHH--HTGGGC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCCchHHHHHHHHHHHHHH--HHHHHH
Confidence 4467889999999999888642 222 333 47899999999888889999999999984 344444
No 90
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=64.39 E-value=34 Score=29.55 Aligned_cols=138 Identities=14% Similarity=-0.013 Sum_probs=79.6
Q ss_pred hCCcchHHHhhccC-----------CChhHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhccCC--chHHHHHHHH
Q psy12638 69 NLNLIEKLPRILMI-----------EDSNLQSSTLKLLFNLSFDTNLREKII-KIGFLPKLVSLLEEG--KHQKIILQLL 134 (334)
Q Consensus 69 ~~g~I~~Lv~LL~~-----------~~~~l~~~al~~L~NLS~d~~~r~~iv-~~g~Ip~Lv~lL~~~--~~~~~al~~L 134 (334)
..|++..|+..|.. .+.+.+..+++||..+.-+......+. ..++|..|+..|.++ ..+..++.+|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 45666666666532 145678889999999998876666665 477889999999654 4566777777
Q ss_pred HHccCChh--h-hhH----------hhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc----cCcchHHHHHh---cCc
Q psy12638 135 YHLSIEDR--V-KAM----------FAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA----LNSRNAELMLK---NRQ 194 (334)
Q Consensus 135 ~~LS~~~~--~-r~~----------i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs----~~~~n~~~i~~---~~g 194 (334)
.-+|..++ + -.. ..+..-..++++.+.+....+....+ -.++|.- .|.+-+-.+.. .-|
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~-m~lIN~li~~~~dl~~R~~lR~ef~~~G 199 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC-LQLINALITPAEELDFRVHIRSELMRLG 199 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHH-HHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 66666542 2 111 22333566788887643332332222 2345552 12222222221 247
Q ss_pred hHHHHHHHhcCCh
Q psy12638 195 LELLMIQAFTQKN 207 (334)
Q Consensus 195 l~~Lv~~l~~~~d 207 (334)
+...++.+....+
T Consensus 200 l~~il~~l~~~~~ 212 (233)
T 2f31_A 200 LHQVLQELREIEN 212 (233)
T ss_dssp HHHHHHHHHHCCC
T ss_pred hHHHHHHHhccCC
Confidence 7777776654433
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=64.29 E-value=96 Score=32.21 Aligned_cols=209 Identities=11% Similarity=-0.013 Sum_probs=103.3
Q ss_pred CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc---c----CCchHHHHHHHHHHccCChh-hhhHhhccCcHH
Q psy12638 83 EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL---E----EGKHQKIILQLLYHLSIEDR-VKAMFAYTNCMS 154 (334)
Q Consensus 83 ~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL---~----~~~~~~~al~~L~~LS~~~~-~r~~i~~t~~i~ 154 (334)
.+-.-++.|+.++..++....-.. ...+|.++.++ . +|..+..++.++..+|..-. ....+ ...++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 455678999999999986532111 24455555544 2 34467778888887774321 11111 12456
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHH----hcC--ChH---HHHHHHHHHhcCCC-ch
Q psy12638 155 LLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQA----FTQ--KNI---LLLKVIRNMSIHSN-VK 224 (334)
Q Consensus 155 ~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l----~~~--~d~---~~~k~l~nLa~~~~-~~ 224 (334)
.|+..+ + ..++..+..++.+++. .+...+. ..++.++..+ .++ +.. .++.++..++..-+ ..
T Consensus 550 ~l~~~l-~---~~v~~~A~~al~~l~~--~~~~~l~--p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~ 621 (971)
T 2x1g_F 550 LLVRGL-N---SSMSAQATLGLKELCR--DCQLQLK--PYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEE 621 (971)
T ss_dssp HHHHHH-H---SSCHHHHHHHHHHHHH--HCHHHHH--HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHh-C---hHHHHHHHHHHHHHHH--HHHHhcc--ccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHH
Confidence 666666 2 4566666666677753 3334443 2344444433 232 112 24666666665432 22
Q ss_pred hh--hhhhHHHHHHHhh----cCC-cc---chhHHhhcHHH-HHHHHHHhcCC-------c-chHHHhhhCCchHHHHHH
Q psy12638 225 HY--FVDYIGDIANCVQ----KEK-DE---NIKLECLGTLE-VINFIGTAASD-------P-ISAEHFCKNSTVDLLINL 285 (334)
Q Consensus 225 ~~--f~~~i~~L~~~l~----~~~-~~---~~~ve~Lg~le-av~~lg~la~~-------~-~~~~~l~~~g~I~~Lv~L 285 (334)
.. |...+.+++..+. +.. .+ ...+++++.+. ++..++.-... + ..... -..+.|.+..+
T Consensus 622 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~i~~~l~~~ 699 (971)
T 2x1g_F 622 IPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV--MQRTMPIFKRI 699 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH--HHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH--HHHHHHHHHHH
Confidence 11 4455555554332 211 11 23445554441 11122110000 1 11111 22478888888
Q ss_pred hccccCCchHHHHHHHHHHHHH
Q psy12638 286 LKEMQEDDEIVLQILYVFYQIC 307 (334)
Q Consensus 286 L~~~~~dde~vlqi~~~l~~l~ 307 (334)
+.....++++.-.++.+++.++
T Consensus 700 l~~~~~~~~v~e~~~~~~~~~~ 721 (971)
T 2x1g_F 700 AEMWVEEIDVLEAACSAMKHAI 721 (971)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHH
Confidence 8755556678877888888876
No 92
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=63.31 E-value=59 Score=30.45 Aligned_cols=138 Identities=14% Similarity=-0.005 Sum_probs=84.6
Q ss_pred CCcchHHHhhcc-----------CCChhHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhccCC--chHHHHHHHHH
Q psy12638 70 LNLIEKLPRILM-----------IEDSNLQSSTLKLLFNLSFDTNLREKII-KIGFLPKLVSLLEEG--KHQKIILQLLY 135 (334)
Q Consensus 70 ~g~I~~Lv~LL~-----------~~~~~l~~~al~~L~NLS~d~~~r~~iv-~~g~Ip~Lv~lL~~~--~~~~~al~~L~ 135 (334)
.+++..|+.+|. ..+...+..+++||..+.-+......+. ..+.|..|+..|.++ ..+..++.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 566788888774 2244778889999999998876655555 577899999999644 56777888887
Q ss_pred HccCChh--h-hhH----------hhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccC----cchHHHHHh---cCch
Q psy12638 136 HLSIEDR--V-KAM----------FAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALN----SRNAELMLK---NRQL 195 (334)
Q Consensus 136 ~LS~~~~--~-r~~----------i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~----~~n~~~i~~---~~gl 195 (334)
-+|..++ + -.. .++..-..++++.|.+....+.... .-.++|...+ -+-+..+.. .-|+
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~-~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 266 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVG-CLQLINALITPAEELDFRVHIRSELMRLGL 266 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHH-HHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHCCh
Confidence 7776543 2 111 2334457788998875433333222 2344565222 222333331 2588
Q ss_pred HHHHHHHhcCChH
Q psy12638 196 ELLMIQAFTQKNI 208 (334)
Q Consensus 196 ~~Lv~~l~~~~d~ 208 (334)
...++.+...+++
T Consensus 267 ~~il~~lr~~~~~ 279 (383)
T 3eg5_B 267 HQVLQELREIENE 279 (383)
T ss_dssp HHHHHHHTTSCCH
T ss_pred HHHHHHHhcCCCh
Confidence 8888876655444
No 93
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=62.86 E-value=74 Score=27.39 Aligned_cols=206 Identities=15% Similarity=0.165 Sum_probs=104.7
Q ss_pred hCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc-CCc---hHHHHHHHHHHccCChhh
Q psy12638 69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE-EGK---HQKIILQLLYHLSIEDRV 143 (334)
Q Consensus 69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~-~~~---~~~~al~~L~~LS~~~~~ 143 (334)
+..++..++++|..+-=.++.+|++++.+++.- ++.-+.++ .+|.-+++ ++. .++. .+.+..++..
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeI-a~a~G~la~i--- 100 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEI-AKAFGQMAKE--- 100 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHH-HHHHHHHHHH---
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHH-HHHHhHHHHh---
Confidence 456788899999887778999999999999975 56555443 45666664 432 2333 3335555432
Q ss_pred hhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH-ccCcchHHHHHhcCchHHHHHHHhcCChHH---HHHHHHHHhc
Q psy12638 144 KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL-ALNSRNAELMLKNRQLELLMIQAFTQKNIL---LLKVIRNMSI 219 (334)
Q Consensus 144 r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL-s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa~ 219 (334)
|..+.+ +.+|.|..-..-+ ++..+-....++--. -.+|+....+++ .+..++.+.++.- ++.++..+..
T Consensus 101 ~Pe~v~-~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~~v~r-----di~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 101 KPELVK-SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMASIVR-----DFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp CHHHHH-HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHHHHHH-----HHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred CHHHHH-hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHHHHHH-----HHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 122111 1334444433332 333222211111111 124444444443 3444444333222 3444444443
Q ss_pred CCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHH
Q psy12638 220 HSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQ 298 (334)
Q Consensus 220 ~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlq 298 (334)
+. .+...+++++|..++...+ +. +.. .+|..++.+|. +|..++. |..-+.-+...+ +.+.-.
T Consensus 174 n~--~~yv~PfLprL~aLL~D~d--ei-VRa----SaVEtL~~lA~~npklRki------i~~kl~e~~D~S--~lv~~~ 236 (253)
T 2db0_A 174 NS--FKYVNPFLPRIINLLHDGD--EI-VRA----SAVEALVHLATLNDKLRKV------VIKRLEELNDTS--SLVNKT 236 (253)
T ss_dssp TT--HHHHGGGHHHHHGGGGCSS--HH-HHH----HHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSC--HHHHHH
T ss_pred cC--ccccCcchHHHHHHHcCcc--hh-hhH----HHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcH--HHHHHH
Confidence 31 1224689999988774433 33 222 37888899998 6665543 222222222222 244444
Q ss_pred HHHHHHHHH
Q psy12638 299 ILYVFYQIC 307 (334)
Q Consensus 299 i~~~l~~l~ 307 (334)
+...++.++
T Consensus 237 V~egL~rl~ 245 (253)
T 2db0_A 237 VKEGISRLL 245 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666665
No 94
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=59.66 E-value=15 Score=32.18 Aligned_cols=128 Identities=9% Similarity=0.034 Sum_probs=75.0
Q ss_pred cchhHHHHHHHh-cccchhhHHHhH--h---CCcchHHHhhc-cCCChhHHHHHHHHHHhhcCChhHH-HHHH---hcCC
Q psy12638 45 KSKREGRQDSRK-LSVYHVNKEQMA--N---LNLIEKLPRIL-MIEDSNLQSSTLKLLFNLSFDTNLR-EKII---KIGF 113 (334)
Q Consensus 45 ~~~~~A~~~L~~-LSi~~enk~~m~--~---~g~I~~Lv~LL-~~~~~~l~~~al~~L~NLS~d~~~r-~~iv---~~g~ 113 (334)
+.|++|+..|.. +... +. .+. . ..++..|.+.+ ...|..++..|+.+|..|+. ..+ ..+. ..-+
T Consensus 31 ~eRk~al~~L~~~~~~~--~~-~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~--~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 31 KDRVEALEEFWDSVLSQ--TK-KLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD--KLKTPGFSKDYVSLV 105 (249)
T ss_dssp HHHHHHHHHHHHHTGGG--CC-CBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHCTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CC-ccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH--hcccccccHHHHHHH
Confidence 445567767766 5421 11 111 1 24566777888 67788999999999999994 222 1221 1236
Q ss_pred hHHHHHhccCC--chHHHHHHHHHHccC--ChhhhhHhh-ccCcHHHHHHHhccCCCCchHHHHHHHHHHHc
Q psy12638 114 LPKLVSLLEEG--KHQKIILQLLYHLSI--EDRVKAMFA-YTNCMSLLMNMLLVEQDDETDNVLVALCINLA 180 (334)
Q Consensus 114 Ip~Lv~lL~~~--~~~~~al~~L~~LS~--~~~~r~~i~-~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs 180 (334)
+|.+++.+++. ..+..+...|-.+.. ++.. .. . -...++.|...|.+ ++.+++.+++..+..+.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~-~~-~~l~~ll~~l~~~l~~-k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA-SS-GRNEDMLKDILEHMKH-KTPQIRMECTQLFNASM 174 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC-TT-CTTHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc-cC-CcHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHH
Confidence 88999999764 344554444444432 1100 00 0 01378888888876 46677776666655543
No 95
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=59.53 E-value=29 Score=33.94 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=53.1
Q ss_pred CcchhHHHHHHHhcc-cchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc
Q psy12638 44 PKSKREGRQDSRKLS-VYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE 122 (334)
Q Consensus 44 ~~~~~~A~~~L~~LS-i~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~ 122 (334)
++.|+-|+.|+-+-- .|++-.+. ++..++.|...++..++..|++-|..++.| +.-.+++ -.|+++|.
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kia-----DvL~QlLq 110 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVA-----DILTQLLQ 110 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHH-----HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHH-----HHHHHHHh
Confidence 356778888885544 46665554 688999999999999999999999999998 5544433 35777776
Q ss_pred CCc
Q psy12638 123 EGK 125 (334)
Q Consensus 123 ~~~ 125 (334)
+++
T Consensus 111 tdd 113 (507)
T 3u0r_A 111 TDD 113 (507)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
No 96
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=57.00 E-value=62 Score=30.35 Aligned_cols=138 Identities=14% Similarity=-0.015 Sum_probs=81.7
Q ss_pred CCcchHHHhhccC-----------CChhHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhccCC--chHHHHHHHHH
Q psy12638 70 LNLIEKLPRILMI-----------EDSNLQSSTLKLLFNLSFDTNLREKII-KIGFLPKLVSLLEEG--KHQKIILQLLY 135 (334)
Q Consensus 70 ~g~I~~Lv~LL~~-----------~~~~l~~~al~~L~NLS~d~~~r~~iv-~~g~Ip~Lv~lL~~~--~~~~~al~~L~ 135 (334)
.|++..|+..|.. .+.+.+..+++||..+.-+......+. ..++|..|+..|.++ ..+..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4566666665531 135678889999999998875555555 567899999999644 45666777776
Q ss_pred HccCChh--h-h----------hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc----cCcchHHHHHh---cCch
Q psy12638 136 HLSIEDR--V-K----------AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA----LNSRNAELMLK---NRQL 195 (334)
Q Consensus 136 ~LS~~~~--~-r----------~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs----~~~~n~~~i~~---~~gl 195 (334)
-+|..++ + - ..+.+..-..++|+.+.++...+....+ -.++|.- .|.+-+-.+.. .-|+
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~-m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL 204 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC-LQLINALITPAEELDFRVHIRSELMRLGL 204 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHH-HHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 6666542 3 1 1223334567788888754333432222 3345552 22222323332 2588
Q ss_pred HHHHHHHhcCChH
Q psy12638 196 ELLMIQAFTQKNI 208 (334)
Q Consensus 196 ~~Lv~~l~~~~d~ 208 (334)
...++.+....++
T Consensus 205 ~~il~~Lr~~~~~ 217 (386)
T 2bnx_A 205 HQVLQELREIENE 217 (386)
T ss_dssp HHHHHHHTTCCCH
T ss_pred HHHHHHHhccCCh
Confidence 8888887765544
No 97
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=52.19 E-value=11 Score=32.81 Aligned_cols=66 Identities=9% Similarity=0.166 Sum_probs=45.6
Q ss_pred cchHHHhhhCCchHHHHHHhccc---------cCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcC
Q psy12638 267 PISAEHFCKNSTVDLLINLLKEM---------QEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 267 ~~~~~~l~~~g~I~~Lv~LL~~~---------~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
.+|.+.|. .+++..|++.|..- ..|.+....++.|+..+..++...+.++...+.+..|...|..+
T Consensus 34 ~~Wv~~F~-~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~ 108 (233)
T 2f31_A 34 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA 108 (233)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTT
T ss_pred cHHHHHHH-HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCC
Confidence 44666663 34456666666431 12456777789999999988888888888878787777766544
No 98
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=47.12 E-value=2.9e+02 Score=29.38 Aligned_cols=219 Identities=11% Similarity=0.153 Sum_probs=115.6
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCCh----hHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHc--cCChh
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT----NLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHL--SIEDR 142 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~----~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~L--S~~~~ 142 (334)
++++.|.+.+..+... +.|+.++..|+... ....-++ +.+|.+...+.+. ..+..|-.....+ +..+.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 6788888888776555 88888888888443 3333333 6788888888543 3454443333332 11221
Q ss_pred hhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHh-c-CchHHHHHHHhcCChHH---HHHHHHHH
Q psy12638 143 VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK-N-RQLELLMIQAFTQKNIL---LLKVIRNM 217 (334)
Q Consensus 143 ~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~-~-~gl~~Lv~~l~~~~d~~---~~k~l~nL 217 (334)
.- ...+|.|.+.|.+...=+.+..++.++-.|+.+. ..++.. - +.+|.+-+........+ ..+++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 11 2268999999975432233334445555665443 233332 1 34454444444444443 24455555
Q ss_pred hcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHH----------------------------------HHHHHHHHh
Q psy12638 218 SIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTL----------------------------------EVINFIGTA 263 (334)
Q Consensus 218 a~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~l----------------------------------eav~~lg~l 263 (334)
+.--.|+- +.++++.|++.+.+.+. +-||+-.| .++..+.+|
T Consensus 203 ~~~~~n~d-~~~~~~~~~~~~~~p~~---~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~ 278 (986)
T 2iw3_A 203 TETVDNKD-IERFIPSLIQCIADPTE---VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNM 278 (986)
T ss_dssp GGGCCCTT-TGGGHHHHHHHHHCTTH---HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HhcCCCcc-hhhhHHHHHHHhcChhh---hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcch
Confidence 54322221 34567777776654431 22222222 467777788
Q ss_pred cC---CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHH
Q psy12638 264 AS---DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQI 306 (334)
Q Consensus 264 a~---~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l 306 (334)
++ ||.-+..|.- .+.|.+...... ..|+|.---+-.|+.+|
T Consensus 279 ~~lv~~~~~~~~f~~-~l~p~~~~~~~~-~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 279 CKLVEDPQVIAPFLG-KLLPGLKSNFAT-IADPEAREVTLRALKTL 322 (986)
T ss_dssp HTTCCCHHHHHHHHT-TTHHHHHHHTTT-CCSHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHhhhhh-hhhhHHHHHhhc-cCCHHHHHHHHHHHHHH
Confidence 77 5554444332 255666555543 44555444444455444
No 99
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=41.06 E-value=25 Score=33.10 Aligned_cols=67 Identities=9% Similarity=0.160 Sum_probs=48.8
Q ss_pred CcchHHHhhhCCchHHHHHHhccc---------cCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcC
Q psy12638 266 DPISAEHFCKNSTVDLLINLLKEM---------QEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 266 ~~~~~~~l~~~g~I~~Lv~LL~~~---------~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
...|.+.|. .+++..|.++|..- ..|.+....++.|+.++..+....+.++...+.+..|...|..+
T Consensus 99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~ 174 (383)
T 3eg5_B 99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA 174 (383)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTT
T ss_pred ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCC
Confidence 456777777 44578888887521 23456777789999999988888888888888887877776554
No 100
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=40.85 E-value=22 Score=31.04 Aligned_cols=67 Identities=7% Similarity=0.117 Sum_probs=48.1
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCChhH-HHHHH---hcCChHHHHHhccCC--chHHHHHHHHHHcc
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNL-REKII---KIGFLPKLVSLLEEG--KHQKIILQLLYHLS 138 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~-r~~iv---~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS 138 (334)
+++.|...+.+++..++..++.+|..+...... -..+. ...++|.|.+++.++ ..|..|...|..+.
T Consensus 147 ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 147 MLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 667788889999999999999999999864321 02221 257899999999654 46777776665543
No 101
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=40.51 E-value=13 Score=30.21 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=54.8
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhccC--------CchHHHHHHHHHHccC
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLLEE--------GKHQKIILQLLYHLSI 139 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL~~--------~~~~~~al~~L~~LS~ 139 (334)
.++..|.+-+.++++.++-.|+.+|--+..+ +....++.+..++.-|++++.+ +..+..++.++..-+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3556677788899999999999999999998 4788899999999999999852 2346666776666554
No 102
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=36.24 E-value=2.7e+02 Score=28.84 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=52.6
Q ss_pred hccCC---ChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCCh--------h-hh
Q psy12638 79 ILMIE---DSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIED--------R-VK 144 (334)
Q Consensus 79 LL~~~---~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~--------~-~r 144 (334)
.+.++ ++-++..|+.+|..++.+-. . + .-..++|.++..|.++ ..+..|+..|.+++... + .+
T Consensus 463 ~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~-~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~ 539 (960)
T 1wa5_C 463 DLTSNNIPHIILRVDAIKYIYTFRNQLT-K-A-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHK 539 (960)
T ss_dssp HHHCSSCSCHHHHHHHHHHHHHTGGGSC-H-H-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCG
T ss_pred HhcCCCCCCceehHHHHHHHHHHHhhCC-H-H-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccH
Confidence 34555 78899999999999987521 1 1 1344677888888654 36788999999987632 1 24
Q ss_pred hHhhc--cCcHHHHHHHhcc
Q psy12638 145 AMFAY--TNCMSLLMNMLLV 162 (334)
Q Consensus 145 ~~i~~--t~~i~~Lv~LL~~ 162 (334)
..+.. .+.++.|..++..
T Consensus 540 ~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 540 EDISNSTEILLKNLIALILK 559 (960)
T ss_dssp GGTTTTHHHHHHHHHHHHHT
T ss_pred HHhhhhHHHHHHHHHHHHHh
Confidence 44432 2345566677765
No 103
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=33.95 E-value=18 Score=29.48 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=53.4
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhccC--------CchHHHHHHHHHHccC
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLEE--------GKHQKIILQLLYHLSI 139 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~~--------~~~~~~al~~L~~LS~ 139 (334)
++..|.+-+.++++.++-.|+.+|--+..+. ....++.+..++.-|++++++ +..+..++.++..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 5556777888999999999999999999873 677888889999999999853 2346666666666654
No 104
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=33.03 E-value=25 Score=29.23 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=54.0
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhccC--------CchHHHHHHHHHHccC
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLLEE--------GKHQKIILQLLYHLSI 139 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL~~--------~~~~~~al~~L~~LS~ 139 (334)
++..|.+-+.++++.++-.|+.+|--+..+ ...+.++.+..++.-|+++++. +..++.++.++..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 556677888899999999999999999998 3778889899999999999852 2346666776666554
No 105
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=31.87 E-value=2e+02 Score=24.77 Aligned_cols=101 Identities=11% Similarity=0.030 Sum_probs=56.4
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCCh------hHHHHHHhcCChHHHHH-hccCCc--hHHHHHHHHHHccCChh
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDT------NLREKIIKIGFLPKLVS-LLEEGK--HQKIILQLLYHLSIEDR 142 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~------~~r~~iv~~g~Ip~Lv~-lL~~~~--~~~~al~~L~~LS~~~~ 142 (334)
.++.+-+.+...|..++..++.+|..+...- ..+..-.-..++|.|+. .++++. .+..|...+..+.....
T Consensus 56 ~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~ 135 (278)
T 4ffb_C 56 DPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT 135 (278)
T ss_dssp CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC
Confidence 3445567888889999999999998876421 12233334567888884 576554 45556655544432111
Q ss_pred hhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHH
Q psy12638 143 VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178 (334)
Q Consensus 143 ~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~n 178 (334)
... ..++.+...+.+ .++.+..+++..+..
T Consensus 136 ~~~-----~~~e~l~~~l~~-Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 136 SIT-----QSVELVIPFFEK-KLPKLIAAAANCVYE 165 (278)
T ss_dssp SSH-----HHHHHHGGGGGC-SCHHHHHHHHHHHHH
T ss_pred cHH-----HHHHHHHHHHhc-cCHHHHHHHHHHHHH
Confidence 000 123444455543 455555554444444
No 106
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.69 E-value=22 Score=30.86 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=52.2
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhcc---CCchHHHHHHHHHHccC
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLE---EGKHQKIILQLLYHLSI 139 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~---~~~~~~~al~~L~~LS~ 139 (334)
.++..|.+-+.++++.++-.|+.+|--+..+- ....++.+..++..|+++++ ++..++.++.++...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 34556777888999999999999999999884 56888888888888888884 22455666666665543
No 107
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=29.43 E-value=41 Score=31.61 Aligned_cols=66 Identities=9% Similarity=0.165 Sum_probs=44.7
Q ss_pred cchHHHhhhCCchHHHHHHhccc---------cCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcC
Q psy12638 267 PISAEHFCKNSTVDLLINLLKEM---------QEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG 333 (334)
Q Consensus 267 ~~~~~~l~~~g~I~~Lv~LL~~~---------~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~ 333 (334)
..|.+.|.. +++..|++.|... ..|.+....++.|+..+..+....+.++...+.+..|...|..+
T Consensus 38 ~~Wv~~F~~-~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~ 112 (386)
T 2bnx_A 38 VSWVQTFGA-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA 112 (386)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTT
T ss_pred cHHHHHHHH-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCC
Confidence 445565543 3456666666421 12456777789999999988888888888777776777766544
No 108
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=27.53 E-value=31 Score=27.54 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=50.5
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccC
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSI 139 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~ 139 (334)
.++..|.+-|.++++.++-.|+.+|--+..+. ....++.+..++.-++++++ ++..+..++.++...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 35556777788899999999999999998873 56667777778888888773 34456666666665543
No 109
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=27.23 E-value=36 Score=27.96 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=51.0
Q ss_pred CcchHHHhhccCCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhccC---CchHHHHHHHHHHcc
Q psy12638 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLLEE---GKHQKIILQLLYHLS 138 (334)
Q Consensus 71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL~~---~~~~~~al~~L~~LS 138 (334)
.++..|.+-|.++++.++-.|+.+|--+..+ .....++.+..++.-|+++++. +..++.++.++..-+
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3555677778899999999999999999987 4677788888888888888852 344555555555444
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=26.33 E-value=1.5e+02 Score=25.77 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=28.8
Q ss_pred hHHHhhccCCChhHHHHHHH-----HHHhhcCC--hhHHHHHHhcCChHHHHHhccCCc
Q psy12638 74 EKLPRILMIEDSNLQSSTLK-----LLFNLSFD--TNLREKIIKIGFLPKLVSLLEEGK 125 (334)
Q Consensus 74 ~~Lv~LL~~~~~~l~~~al~-----~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL~~~~ 125 (334)
+.|..++..++..++..+++ .+..|..| +++|..++..-.-+.+..++++++
T Consensus 125 ~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d 183 (244)
T 1lrv_A 125 EQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPE 183 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSS
T ss_pred HHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 34556666666666666554 23344454 367777776544444445555443
No 111
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=25.78 E-value=1.9e+02 Score=30.81 Aligned_cols=156 Identities=10% Similarity=0.103 Sum_probs=91.2
Q ss_pred CCcchHHHhhccCCC-hhHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHHhcc--CCchHHHHHHHHHHccCChhhh
Q psy12638 70 LNLIEKLPRILMIED-SNLQSSTLKLLFNLSFDTNLREKIIK--IGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVK 144 (334)
Q Consensus 70 ~g~I~~Lv~LL~~~~-~~l~~~al~~L~NLS~d~~~r~~iv~--~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r 144 (334)
..++|.|+.-+.+.. =+.+.-|+.++..|+.+. ..++.. -.+||.+.+.+. .++....|..++-.++.-=.|+
T Consensus 132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~ 209 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 209 (986)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc
Confidence 346788887776654 478889999999999643 334432 456777777774 3567777877777776543343
Q ss_pred hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHH----HHHHHHHHhcC
Q psy12638 145 AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNIL----LLKVIRNMSIH 220 (334)
Q Consensus 145 ~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~ 220 (334)
.. ..-||.|++-+.+ + +++. +++-.+.--++..+.-..-. .-+.||+.+.++..... ..-++-|++.-
T Consensus 210 d~---~~~~~~~~~~~~~-p-~~~~-~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 210 DI---ERFIPSLIQCIAD-P-TEVP-ETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp TT---GGGHHHHHHHHHC-T-THHH-HHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred ch---hhhHHHHHHHhcC-h-hhhH-HHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 32 2358999999875 3 3443 33333333233333322111 14567888877644432 24457788876
Q ss_pred CCchhhhhhhHHHHH
Q psy12638 221 SNVKHYFVDYIGDIA 235 (334)
Q Consensus 221 ~~~~~~f~~~i~~L~ 235 (334)
=.+.+...+++++|+
T Consensus 282 v~~~~~~~~f~~~l~ 296 (986)
T 2iw3_A 282 VEDPQVIAPFLGKLL 296 (986)
T ss_dssp CCCHHHHHHHHTTTH
T ss_pred cCCHHHHhhhhhhhh
Confidence 555444334444444
No 112
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=25.10 E-value=42 Score=29.62 Aligned_cols=77 Identities=9% Similarity=0.092 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHhhcCChh-HHHHHHhcCChHHHHHhc----cC------CchHHHHHHHHHHccCCh-hhhhHhhc
Q psy12638 82 IEDSNLQSSTLKLLFNLSFDTN-LREKIIKIGFLPKLVSLL----EE------GKHQKIILQLLYHLSIED-RVKAMFAY 149 (334)
Q Consensus 82 ~~~~~l~~~al~~L~NLS~d~~-~r~~iv~~g~Ip~Lv~lL----~~------~~~~~~al~~L~~LS~~~-~~r~~i~~ 149 (334)
++.+..+-.++|+++|+-.++. .|.-+.+....+.+++.+ .+ ...+-.++.+++|+|..- ..+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4566789999999999999888 677666544455555544 11 124556778999998753 1121 1
Q ss_pred cCcHHHHHHHhc
Q psy12638 150 TNCMSLLMNMLL 161 (334)
Q Consensus 150 t~~i~~Lv~LL~ 161 (334)
.+..+.+++.+.
T Consensus 178 ~e~~~~l~~~i~ 189 (253)
T 3gae_A 178 LELLPIVADAIN 189 (253)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334455555554
No 113
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=21.30 E-value=76 Score=27.57 Aligned_cols=103 Identities=8% Similarity=0.057 Sum_probs=58.8
Q ss_pred HhCCcchHHH-hhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc--cCCchHHHHHHHHHHccCChhh-
Q psy12638 68 ANLNLIEKLP-RILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL--EEGKHQKIILQLLYHLSIEDRV- 143 (334)
Q Consensus 68 ~~~g~I~~Lv-~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL--~~~~~~~~al~~L~~LS~~~~~- 143 (334)
.-..++|.|+ +.+.+....++..|+.++.-+......-.. +++.+...+ ++|..+.-++.+|..+-..-..
T Consensus 99 ~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 99 LISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC
Confidence 3445677777 457888888899998888777643211111 124445555 3677777777777765322111
Q ss_pred ----hhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHH
Q psy12638 144 ----KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178 (334)
Q Consensus 144 ----r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~n 178 (334)
+..+ ...++.+..++. .++..++..+..++.-
T Consensus 174 ~~~~k~~l--~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 174 NVNVQTFL--PELLKHVPQLAG-HGDRNVRSQTMNLIVE 209 (278)
T ss_dssp TCCHHHHH--HHHGGGHHHHHT-CSSHHHHHHHHHHHHH
T ss_pred cCCchhHH--HHHHHHHHHHHh-CCcHHHHHHHHHHHHH
Confidence 1111 113445666665 4677777766655543
No 114
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.27 E-value=45 Score=28.56 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=48.5
Q ss_pred cchHHHhhccCCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhccC---CchHHHHHHHHHHcc
Q psy12638 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLLEE---GKHQKIILQLLYHLS 138 (334)
Q Consensus 72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL~~---~~~~~~al~~L~~LS 138 (334)
++..|.+-+.++++.++-.|+.+|-.+..+ ...+.++.+..++.-|++++++ +..++.++.++..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 445677778889999999999999999988 3577788888888888888742 234444554444433
Done!