RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12638
(334 letters)
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 71.0 bits (173), Expect = 9e-14
Identities = 48/283 (16%), Positives = 104/283 (36%), Gaps = 17/283 (6%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE 122
+AN + L + E N Q ++L + LR K+++ G + L+ +
Sbjct: 487 RITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL 546
Query: 123 EG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETD----NVLVALC 176
EG K ++ Q L + I + F+ + ++ +L + Q D T L+AL
Sbjct: 547 EGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606
Query: 177 INLALNSRNAELMLK---NRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGD 233
++N + ++K ++E +++ + + N+ + +V F
Sbjct: 607 NLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDR 666
Query: 234 IANCVQ--KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQE 291
+ +++DE C G L +I T+ S + S +D+L L+
Sbjct: 667 VKFLALLCEDEDEETATACAGALAII----TSVSVKCCEKILAIASWLDILHTLIAN--P 720
Query: 292 DDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
+ + + + + + ETD + L +
Sbjct: 721 SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPD 763
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 62.6 bits (152), Expect = 5e-11
Identities = 41/292 (14%), Positives = 99/292 (33%), Gaps = 20/292 (6%)
Query: 55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGF 113
LS + + I L ++L ++ + L NL + + G
Sbjct: 82 HNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 141
Query: 114 LPKLVSLLEEGKH--QKIILQLLYHLSIEDRV-KAMFAYTNCMSLLMNMLLVEQDDETDN 170
L K+V+LL + I L L+ ++ K + + L+N++ ++
Sbjct: 142 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201
Query: 171 VLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILL---LKVIRNMSIHSNVKHYF 227
+ L++ S N +++ ++ L + L+ L +RN+S + +
Sbjct: 202 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--- 258
Query: 228 VDYIGDIANCVQ--KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINL 285
G + VQ D N+ G L + ++ + C+ ++ L+
Sbjct: 259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL-----TCNNYKNKMMVCQVGGIEALVRT 313
Query: 286 LKEMQEDDEIVLQILYVFYQICRHASCQNYL---IKETDAPAYMIDLLNDGN 334
+ + ++I + + ++ ++ LL+ +
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 365
Score = 52.2 bits (125), Expect = 1e-07
Identities = 38/258 (14%), Positives = 78/258 (30%), Gaps = 37/258 (14%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSN--LQSSTLKLLFNLSFDT----NLREKIIKIGFLPK 116
NK + + IE L R ++ + + L +L+ + + LP
Sbjct: 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 356
Query: 117 LVSLLEEGKHQKII---LQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLV 173
+V LL H +I + L+ +L++ A + L+ +L+ D +
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416
Query: 174 ALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGD 233
+ E +++ + ++ + +
Sbjct: 417 GGTQQQFVEGVRMEEIVEG-----------------CTGALHILARDVHNRIVIRGLNT- 458
Query: 234 IANCVQ--KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQE 291
I VQ ENI+ G L + A D +AE L LL
Sbjct: 459 IPLFVQLLYSPIENIQRVAAGVLCEL------AQDKEAAEAIEAEGATAPLTELLHS--R 510
Query: 292 DDEIVLQILYVFYQICRH 309
++ + V +++
Sbjct: 511 NEGVATYAAAVLFRMSED 528
Score = 52.2 bits (125), Expect = 1e-07
Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%)
Query: 61 HVNKEQMANLNLIEKLPRILM-IEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVS 119
M + ++ + R + D T L NLS I K G +P LV
Sbjct: 46 ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK 105
Query: 120 LLEEG--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALC 176
+L + L++L + ++ K + ++ +L L
Sbjct: 106 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165
Query: 177 INLALNSRNAELMLKNRQ-----LELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYI 231
LA ++ ++L++ + ++ + + +V++ +S+ S+ K V+
Sbjct: 166 -ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-- 222
Query: 232 GDIANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINL 285
A +Q + + + CL TL + + + L+ L
Sbjct: 223 ---AGGMQALGLHLTDPSQRLVQNCLWTL--------RNLSDAATKQEGMEGLLGTLVQL 271
Query: 286 LKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
L +D +V + + + ++ + ++ +
Sbjct: 272 LGS--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 318
Score = 51.5 bits (123), Expect = 2e-07
Identities = 38/292 (13%), Positives = 89/292 (30%), Gaps = 41/292 (14%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK-IGFLPKLVSLL 121
+ I +L ++L ED + + ++ LS R I++ + +V +
Sbjct: 6 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65
Query: 122 EEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
+ + L++LS + + L+ ML D + L N
Sbjct: 66 QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH-N 124
Query: 179 LALNSRNAEL-------------MLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNV-K 224
L L+ A++ +L ++ L I ++ ++ + K
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC---------LQILAYGNQESK 175
Query: 225 HYFVDY--IGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLL 282
+ + N ++ E + L+V+ + + + + L
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL------SVCSSNKPAIVEAGGMQAL 229
Query: 283 INLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
L + +V L+ + A+ Q ++ LL +
Sbjct: 230 GLHLTD--PSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDD 276
Score = 48.8 bits (116), Expect = 1e-06
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
L+ N+ + LN I ++L N+Q +L L+ D E I G
Sbjct: 441 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 500
Query: 115 PKLVSLLEEG--KHQKIILQLLYHLS 138
L LL +L+ +S
Sbjct: 501 APLTELLHSRNEGVATYAAAVLFRMS 526
Score = 48.0 bits (114), Expect = 3e-06
Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 26/163 (15%)
Query: 62 VNKEQMANLNLIEKLPRILMIEDSN-LQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSL 120
+ + + + + ++L L +T+ L+ NL+ + + G +P+LV L
Sbjct: 343 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 402
Query: 121 LEEGKHQKI------------------------ILQLLYHLSIEDRVKAMFAYTNCMSLL 156
L L+ L+ + + + N + L
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462
Query: 157 MNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLM 199
+ +L ++ LC LA + AE + L
Sbjct: 463 VQLLYSPIENIQRVAAGVLC-ELAQDKEAAEAIEAEGATAPLT 504
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 61.7 bits (150), Expect = 8e-11
Identities = 42/292 (14%), Positives = 100/292 (34%), Gaps = 20/292 (6%)
Query: 55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGF 113
LS + + I L ++L ++ + L NL + + G
Sbjct: 85 HNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 144
Query: 114 LPKLVSLLEEG--KHQKIILQLLYHLSIEDRV-KAMFAYTNCMSLLMNMLLVEQDDETDN 170
L K+V+LL + K I L L+ ++ K + + L+N++ ++
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204
Query: 171 VLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILL---LKVIRNMSIHSNVKHYF 227
+ L++ S N +++ ++ L + L+ L +RN+S + +
Sbjct: 205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--- 261
Query: 228 VDYIGDIANCVQ--KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINL 285
G + VQ D N+ G L + ++ + C+ ++ L+
Sbjct: 262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL-----TCNNYKNKMMVCQVGGIEALVRT 316
Query: 286 LKEMQEDDEIVLQILYVFYQICRHASC---QNYLIKETDAPAYMIDLLNDGN 334
+ + ++I + + ++ ++ LL+ +
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368
Score = 57.1 bits (138), Expect = 3e-09
Identities = 59/319 (18%), Positives = 103/319 (32%), Gaps = 54/319 (16%)
Query: 55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
+ LSV NK + ++ L L L + L L NLS ++ G L
Sbjct: 211 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT--KQEGMEGLL 268
Query: 115 PKLVSLLEEG--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDE--TD 169
LV LL +L +L+ + K M + L+ +L D E T+
Sbjct: 269 GTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328
Query: 170 NVLVALCINLALNSRNAELMLKNRQ-----------LELLMIQAFTQKNILLLKVIRNMS 218
+ AL +L + AE + ++LL + + +IRN++
Sbjct: 329 PAICALR-HLTSRHQEAE---MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384
Query: 219 IHSNVKHYFVDY-----------------------IGDIANCVQKEKDENIKLECLGTLE 255
+ + G V+ + E I C G L
Sbjct: 385 LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 444
Query: 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNY 315
++ A D + +T+ L + LL + I V ++ +
Sbjct: 445 IL------ARDVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGVLCELAQDKEAAEA 496
Query: 316 LIKETDAPAYMIDLLNDGN 334
+ E A A + +LL+ N
Sbjct: 497 IEAE-GATAPLTELLHSRN 514
Score = 55.2 bits (133), Expect = 1e-08
Identities = 40/289 (13%), Positives = 94/289 (32%), Gaps = 31/289 (10%)
Query: 61 HVNKEQMANLNLIEKLPRILM-IEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVS 119
M + ++ + R + D T L NLS I K G +P LV
Sbjct: 49 ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK 108
Query: 120 LLEEG--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALC 176
+L + L++L + ++ K + ++ +L L
Sbjct: 109 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168
Query: 177 INLALNSRNAELMLKNRQ-----LELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYI 231
LA ++ ++L++ + ++ + + +V++ +S+ S+ K V+
Sbjct: 169 -ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-- 225
Query: 232 GDIANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINL 285
A +Q + + + CL TL ++ T + L+ L
Sbjct: 226 ---AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL--------LGTLVQL 274
Query: 286 LKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
L +D +V + + + ++ + ++ +
Sbjct: 275 LGS--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321
Score = 50.2 bits (120), Expect = 5e-07
Identities = 38/283 (13%), Positives = 92/283 (32%), Gaps = 23/283 (8%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK-IGFLPKLVSLL 121
+ I +L ++L ED + + ++ LS R I++ + +V +
Sbjct: 9 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68
Query: 122 EEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
+ + L++LS + + L+ ML D + L N
Sbjct: 69 QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH-N 127
Query: 179 LALNSRNAELMLKNRQLELLMIQAFTQKNILLLKV----IRNMSIHSNV-KHYFVDY--I 231
L L+ A++ ++ M+ + N+ L + ++ ++ + K +
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 232 GDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQE 291
+ N ++ E + L+V+ + + + + L L +
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVL------SVCSSNKPAIVEAGGMQALGLHLTD--P 239
Query: 292 DDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
+V L+ + A+ Q ++ LL +
Sbjct: 240 SQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDD 279
Score = 47.5 bits (113), Expect = 3e-06
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 57 LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPK 116
L+ N+ + LN I ++L N+Q +L L+ D E I G
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 505
Query: 117 LVSLLEEG--KHQKIILQLLYHLS 138
L LL +L+ +S
Sbjct: 506 LTELLHSRNEGVATYAAAVLFRMS 529
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 57.5 bits (139), Expect = 1e-09
Identities = 52/301 (17%), Positives = 102/301 (33%), Gaps = 33/301 (10%)
Query: 62 VNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL 121
+ Q A+ +++ + + + +L LSFD R + ++G L + LL
Sbjct: 23 CWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELL 82
Query: 122 EEGKHQKIILQL-------------LYHLSIED-RVKAMF-AYTNCMSLLMNMLLVEQDD 166
+ + L +L+ D KA + CM L+ L E +D
Sbjct: 83 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 142
Query: 167 ETDNVLVALCINLAL--NSRNAELMLKNRQLELLMIQAFTQKNILLLK----VIRNMSIH 220
+ L NL+ + + + + + ++ LM A K LK + N+S H
Sbjct: 143 LQQVIASVLR-NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201
Query: 221 S-NVKHYFVDYIGDIANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHF 273
K G +A V + I G L N A++ +
Sbjct: 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR--NVSSLIATNEDHRQIL 259
Query: 274 CKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG 333
+N+ + L+ LK IV + + + + A + + +L++
Sbjct: 260 RENNCLQTLLQHLKS--HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK 317
Query: 334 N 334
+
Sbjct: 318 H 318
Score = 42.1 bits (99), Expect = 2e-04
Identities = 49/270 (18%), Positives = 98/270 (36%), Gaps = 38/270 (14%)
Query: 55 RKLSVYHVNKEQMANLNLIEKLPRILMIE-----------DSNLQSSTLKLLFNLSF-DT 102
KLS ++ M L ++ + +L ++ L+ L NL+F D
Sbjct: 57 MKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV 116
Query: 103 NLREKIIKI-GFLPKLVSLLEEGKH--QKIILQLLYHLSI--EDRVKAMFAYTNCMSLLM 157
+ + + G + LV+ L+ Q++I +L +LS + K + LM
Sbjct: 117 ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176
Query: 158 NMLLVEQDDETDNVLVALCINLALNSRN--AELMLKN----RQLELLMIQAFTQKNILLL 211
L + + T +++ NL+ + A++ + + L ++ T ++
Sbjct: 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236
Query: 212 K---VIRNMSIHSNVKHYFVDYIGDIANCVQ------KEKDENIKLECLGTLEVINFIGT 262
++RN+S + + NC+Q K I GTL +
Sbjct: 237 SGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNL----- 290
Query: 263 AASDPISAEHFCKNSTVDLLINLLKEMQED 292
+A +P E V +L NL+ +
Sbjct: 291 SARNPKDQEALWDMGAVSMLKNLIHSKHKM 320
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 55.7 bits (134), Expect = 8e-09
Identities = 51/301 (16%), Positives = 101/301 (33%), Gaps = 33/301 (10%)
Query: 62 VNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL 121
+ Q A+ +++ + + + +L LSFD R + ++G L + LL
Sbjct: 139 CWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELL 198
Query: 122 EEGKHQKIILQL-------------LYHLSIED-RVKAMF-AYTNCMSLLMNMLLVEQDD 166
+ + L +L+ D KA + CM L+ L E +D
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258
Query: 167 ETDNVLVALCINLAL--NSRNAELMLKNRQLELLMIQAFTQKNILLLK----VIRNMSIH 220
+ L NL+ + + + + + ++ LM A K LK + N+S H
Sbjct: 259 LQQVIASVLR-NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317
Query: 221 SNVKHY-FVDYIGDIANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHF 273
G +A V + I G L N A++ +
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR--NVSSLIATNEDHRQIL 375
Query: 274 CKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG 333
+N+ + L+ LK IV + + + + A + + +L++
Sbjct: 376 RENNCLQTLLQHLKS--HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK 433
Query: 334 N 334
+
Sbjct: 434 H 434
Score = 44.2 bits (104), Expect = 3e-05
Identities = 46/269 (17%), Positives = 92/269 (34%), Gaps = 36/269 (13%)
Query: 55 RKLSVYHVNKEQMANLNLIEKLPRILMIE-----------DSNLQSSTLKLLFNLSF--D 101
KLS ++ M L ++ + +L ++ L+ L NL+F
Sbjct: 173 MKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV 232
Query: 102 TNLREKIIKIGFLPKLVSLLEEGKH--QKIILQLLYHLSI--EDRVKAMFAYTNCMSLLM 157
N G + LV+ L+ Q++I +L +LS + K + LM
Sbjct: 233 ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 292
Query: 158 NMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQ------LELLMIQAFTQKNILLL 211
L + + T +++ NL+ + + + + L ++ T ++
Sbjct: 293 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 352
Query: 212 K---VIRNMSIHSNVKHYFVDYIGD---IANCVQ--KEKDENIKLECLGTLEVINFIGTA 263
++RN+S + + + +Q K I GTL + +
Sbjct: 353 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL-----S 407
Query: 264 ASDPISAEHFCKNSTVDLLINLLKEMQED 292
A +P E V +L NL+ +
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKM 436
Score = 35.3 bits (81), Expect = 0.022
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 8/161 (4%)
Query: 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQ 132
+E + +L + ++ + + L +S + + + G LP L+ LL + +L
Sbjct: 31 VEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGN-DKDSVLL 89
Query: 133 LLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKN 192
S E R +A A N + + ++ VL L A E +
Sbjct: 90 GNSRGSKEARARASAALHNIIHSQPDDKRGRRE---IRVLHLLEQIRAYCETCWEWQEAH 146
Query: 193 RQLELLMIQAFTQKNILLLK----VIRNMSIHSNVKHYFVD 229
+ V+ +S +H +
Sbjct: 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNE 187
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 53.1 bits (127), Expect = 7e-08
Identities = 35/272 (12%), Positives = 85/272 (31%), Gaps = 26/272 (9%)
Query: 63 NKEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL 121
+K + + L I+ L +T ++L LS ++ + I++ G + L L
Sbjct: 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 369
Query: 122 EEGKH--QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL 179
+ + L L +LS + + L+ +L + + L NL
Sbjct: 370 TDPSQRLVQNCLWTLRNLSDAATKQEGME--GLLGTLVQLLGSDDINVVTCAAGILS-NL 426
Query: 180 ALNS-RNAELMLKNRQLELL--MIQAFTQKNILLLKV---IRNMSIHSNVKHYFVDYIGD 233
N+ +N ++ + +E L + + + +R+++ + +
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486
Query: 234 ------IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLK 287
+ + + +G + + A P + + + L+ LL
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNL------ALCPANHAPLREQGAIPRLVQLLV 540
Query: 288 EMQEDDEIVLQILYVFYQICRHASCQNYLIKE 319
+ + Q + I E
Sbjct: 541 R--AHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570
Score = 52.7 bits (126), Expect = 9e-08
Identities = 40/287 (13%), Positives = 95/287 (33%), Gaps = 31/287 (10%)
Query: 63 NKEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL 121
M + ++ + R + D T L NLS I K G +P LV++L
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243
Query: 122 EEG--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
+ L++L + ++ K + ++ +L L
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ-I 302
Query: 179 LALNSRNAELMLKNRQ-----LELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGD 233
LA ++ ++L++ + ++ + + +V++ +S+ S+ K V+
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE---- 358
Query: 234 IANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLK 287
A +Q + + + CL TL ++ T + L+ LL
Sbjct: 359 -AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL--------LGTLVQLLG 409
Query: 288 EMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
+D +V + + + ++ + ++ +
Sbjct: 410 S--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 454
Score = 52.0 bits (124), Expect = 1e-07
Identities = 41/283 (14%), Positives = 85/283 (30%), Gaps = 45/283 (15%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL 121
+Q L+ L ++L +D N+ + +L NL+ + + + ++G + LV +
Sbjct: 391 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450
Query: 122 EEGKHQK--------IILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLV 173
++ + L + + + +++ +L V
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510
Query: 174 ALCINLALNSRNAELM-------------------LKNRQLELLMIQAFTQKNILLLKV- 213
L NLAL N + + R Q F + + V
Sbjct: 511 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570
Query: 214 -----IRNMSIHSNVKHYFVDYIGDIANCVQ--KEKDENIKLECLGTLEVINFIGTAASD 266
+ ++ + + I VQ ENI+ G L + A D
Sbjct: 571 ACTGALHILARDIHNRIVIRGLNT-IPLFVQLLYSPIENIQRVAAGVLCEL------AQD 623
Query: 267 PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH 309
+AE L LL ++ + V +++
Sbjct: 624 KEAAEAIEAEGATAPLTELLHS--RNEGVATYAAAVLFRMSED 664
Score = 50.0 bits (119), Expect = 7e-07
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 57 LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPK 116
L+ N+ + LN I ++L N+Q +L L+ D E I G
Sbjct: 579 LARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 638
Query: 117 LVSLLEEG--KHQKIILQLLYHLS 138
L LL +L+ +S
Sbjct: 639 LTELLHSRNEGVATYAAAVLFRMS 662
Score = 43.1 bits (101), Expect = 9e-05
Identities = 22/172 (12%), Positives = 51/172 (29%), Gaps = 25/172 (14%)
Query: 54 SRKLSVYHVNKEQMANLNLIEKLPRILM----------------------IEDSNLQSST 91
R L++ N + I +L ++L+ + + +
Sbjct: 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC 572
Query: 92 LKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAY 149
L L+ D + R I + +P V LL Q++ +L L+ +
Sbjct: 573 TGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 632
Query: 150 TNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQ 201
+ L +L + L ++ + + +L + +
Sbjct: 633 EGATAPLTELLHSRNEGVATYAAAVLF-RMSEDKPQDYKKRLSVELTSSLFR 683
Score = 40.0 bits (93), Expect = 8e-04
Identities = 35/258 (13%), Positives = 90/258 (34%), Gaps = 18/258 (6%)
Query: 87 LQSSTLKLLFNLSFDTNLREK-IIKIGFLPKLVSLLEEGKH--QKIILQLLYHLSIEDRV 143
L + L + N ++ + +P+L LL + +++ LS ++
Sbjct: 124 LAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS 183
Query: 144 K-AMFAYTNCMSLLMNMLLVEQDDET-DNVLVALCINLALNSRNAELMLKNRQLELLMIQ 201
+ A+ +S ++ + D ET L NL+ + + K+ + L+
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLH-NLSHHREGLLAIFKSGGIPALVNM 242
Query: 202 AFTQKNILL---LKVIRNMSIHSNVKHYFVDYIGDIANCVQ--KEKDENIKLECLGTLEV 256
+ + +L + + N+ +H V G + V + + L++
Sbjct: 243 LGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 302
Query: 257 INFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYL 316
+ A + S + L+N+++ ++++ V + +S + +
Sbjct: 303 L-----AYGNQESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAI 356
Query: 317 IKETDAPAYMIDLLNDGN 334
+ E + L D +
Sbjct: 357 V-EAGGMQALGLHLTDPS 373
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 50.7 bits (121), Expect = 3e-07
Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 20/289 (6%)
Query: 58 SVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPK 116
S + + + +L E ++Q + L N++ D T R+ ++ LP
Sbjct: 94 SGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPP 153
Query: 117 LVSLLEEG---KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDET-DNVL 172
L+ L + + + L +L FA + +++ LL D + +
Sbjct: 154 LLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADAC 213
Query: 173 VALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILL----LKVIRNMSIHSNVKHYFV 228
AL + + ++ L ++ + + L+ + N+ +++ +
Sbjct: 214 WALSYLSDGPNDKIQAVIDAGVCRRL-VELLMHNDYKVVSPALRAVGNIVTGDDIQTQVI 272
Query: 229 DYIGDIANCVQ--KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLL 286
+ + + E+IK E T+ I A + + + LI++L
Sbjct: 273 LNCSALQSLLHLLSSPKESIKKEACWTISNI-----TAGNRAQIQTVIDANIFPALISIL 327
Query: 287 KEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLNDGN 334
+ + + + S Q + E + DLL +
Sbjct: 328 QT--AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374
Score = 40.3 bits (94), Expect = 6e-04
Identities = 31/200 (15%), Positives = 71/200 (35%), Gaps = 18/200 (9%)
Query: 72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-LREKIIKIGFLPKLVSLLEEGKH--QK 128
+ L +L + D+++ + L LS N + +I G +LV LL +
Sbjct: 193 CLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS 252
Query: 129 IILQLLYHL-SIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAE 187
L+ + ++ + +D + + + L+++L ++ + N+ +R
Sbjct: 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS-NITAGNRAQI 311
Query: 188 LMLKNRQLELLMIQAFTQKNILLLK----VIRNMSIHSNVKHYFVDYIGDIANCVQ---- 239
+ + + +I K I N + + + + Y+ + C++
Sbjct: 312 QTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ--IKYLVE-LGCIKPLCD 368
Query: 240 --KEKDENIKLECLGTLEVI 257
D I L LE I
Sbjct: 369 LLTVMDSKIVQVALNGLENI 388
Score = 32.6 bits (74), Expect = 0.17
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 8/106 (7%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE 122
+ + L I+ L +L + DS + L L N+ +E + +L+E
Sbjct: 353 QIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI-LRLGEQEAKRNGTGINPYCALIE 411
Query: 123 EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDET 168
E I L H + E Y L+ + E +D +
Sbjct: 412 EAYGLDKIEFLQSHENQE-------IYQKAFDLIEHYFGTEDEDSS 450
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 7e-07
Identities = 51/349 (14%), Positives = 96/349 (27%), Gaps = 86/349 (24%)
Query: 22 RNAGVKAQRFDR------GNCNC-----------YGLIVPKSKREGRQDSRKLSVYHVNK 64
+ V+ + + NCN I P S H +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 65 EQMANLNLIEKLPRILMIEDSNLQSS-TLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE 123
++ L + L++ N+Q++ +F+ L KI L++ +
Sbjct: 232 AELRRLLKSKPYENCLLVLL-NVQNAKAWN-----AFN--LSCKI--------LLTTRFK 275
Query: 124 GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVL--VALCINLAL 181
+ H+S++ SLL+ L D L L N
Sbjct: 276 QVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQD-----LPREVLTTNPRR 329
Query: 182 NSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIH----SNVKHYFVDYIGDIANC 237
S AE +++ L + N L I S++ + + F
Sbjct: 330 LSIIAE-SIRD---GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-------L 378
Query: 238 VQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTV------------DLLINL 285
+I L +I F + + K S V + + L
Sbjct: 379 SVFPPSAHIPTI---LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 286 LKEMQEDDEIVLQILYVFYQICRHASC-QNYLIKETDAPAYMIDLLNDG 333
+++ + + H S +Y I +T +I D
Sbjct: 436 KVKLENEYAL-------------HRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Score = 43.3 bits (101), Expect = 1e-04
Identities = 55/303 (18%), Positives = 106/303 (34%), Gaps = 98/303 (32%)
Query: 42 IVPKSKREG--RQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDS--NLQSSTLKLLF- 96
I+ +S R+G D+ K HVN +++ +IE S L+ + + +F
Sbjct: 332 IIAESIRDGLATWDNWK----HVNCDKLTT-----------IIESSLNVLEPAEYRKMFD 376
Query: 97 NLS-F--DTNLREKIIKI-----------GFLPKLV--SLLEEGKHQKIILQLLYHLSIE 140
LS F ++ ++ + + KL SL+E K K + + +E
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKESTISIPSIYLE 434
Query: 141 DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN--------------LA---LNS 183
+VK Y ++ +V+ N+ + + N
Sbjct: 435 LKVKLENEYA------LHRSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 184 RNAELMLKNRQ--LELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIAN----- 236
+ E M R L+ ++ QK IR+ S N ++ + +
Sbjct: 485 EHPERMTLFRMVFLDFRFLE---QK-------IRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 237 CVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLL-INLLKEMQEDDEI 295
C K E + + + ++F+ + I +++ DLL I L M ED+ I
Sbjct: 535 CDNDPKYERL----VNAI--LDFLPKIEENLICSKY------TDLLRIAL---MAEDEAI 579
Query: 296 VLQ 298
+
Sbjct: 580 FEE 582
Score = 28.3 bits (62), Expect = 5.2
Identities = 26/186 (13%), Positives = 53/186 (28%), Gaps = 48/186 (25%)
Query: 122 EEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL 181
E G+HQ +L ED F +C + + +E D+++
Sbjct: 10 ETGEHQYQYKDILSVF--EDAFVDNF---DCKDVQDMPKSILSKEEIDHII--------- 55
Query: 182 NSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKE 241
S++A L LL K + FV+ ++
Sbjct: 56 MSKDAVS-----GTLRLFW-------TLLSK-------QEEMVQKFVE------EVLRIN 90
Query: 242 KD---ENIKLECLG-TLEVINFIGTA-----ASDPISAEHFCKNSTVDLLINLLKEMQED 292
IK E ++ +I + + + + L L E++
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 293 DEIVLQ 298
+++
Sbjct: 151 KNVLID 156
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 46.9 bits (112), Expect = 2e-06
Identities = 42/261 (16%), Positives = 92/261 (35%), Gaps = 26/261 (9%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-LREKIIKIGFLPKLVSLL 121
+ + + + ++ + L +D Q S + + D N + +I G LP LV LL
Sbjct: 4 SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63
Query: 122 EEG--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
+ + L L +++ + + L+ +L + L AL
Sbjct: 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 179 LALNSRNAELMLKNRQLELLMIQAFTQKNILLLK----VIRNMSIHSNVKHYFVDYIGDI 234
+ + + ++ L L +Q + N +L+ + N++ N + + + D
Sbjct: 124 ASGGNEQIQAVIDAGALPAL-VQLLSSPNEQILQEALWALSNIASGGNEQ---IQAVID- 178
Query: 235 ANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKE 288
A + +E I E L L I A+ + + ++ L L
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNI-----ASGGNEQKQAVKEAGALEKLEQLQSH 233
Query: 289 MQEDDEIVLQILYVFYQICRH 309
E+++I + ++ H
Sbjct: 234 --ENEKIQKEAQEALEKLQSH 252
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 46.9 bits (110), Expect = 6e-06
Identities = 40/271 (14%), Positives = 92/271 (33%), Gaps = 10/271 (3%)
Query: 73 IEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLEEG--KHQKI 129
+ ++ +L ++S+ L +L + + ++ + K+ +P LV LL+ +
Sbjct: 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 130 ILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAE 187
L ++S K + + L+ +L +D + V+ NL+ +
Sbjct: 110 ACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169
Query: 188 LMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANC-VQKEKDENI 246
++ + L H + + G + N ++ +
Sbjct: 170 EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRK 229
Query: 247 KLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLL----KEMQEDDEIVLQILYV 302
EC G ++ + FI A ++ + V LL NL +E+ + + V
Sbjct: 230 LRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNV 289
Query: 303 FYQICRHASCQNYLIKETDAPAYMIDLLNDG 333
+ L+ + + I LL +
Sbjct: 290 ANNTGTSPARGYELLFQPEVVRIYISLLKES 320
Score = 44.9 bits (105), Expect = 2e-05
Identities = 42/282 (14%), Positives = 87/282 (30%), Gaps = 13/282 (4%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNL--REKIIKIGFLPKLVSL 120
K + L I L +L + L N+SF + + I +P LV L
Sbjct: 82 VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL 141
Query: 121 LEEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLL------VEQDDETDNV 171
L + + ++I L++LS D +K +L +++ E +++
Sbjct: 142 LRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201
Query: 172 LVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDY- 230
+ L + + R ++ L+ +++ + V+
Sbjct: 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261
Query: 231 IGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQ 290
+ + N + E + E T S E + V + I+LLK
Sbjct: 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK-ES 320
Query: 291 EDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLND 332
+ I+ +C I+ + + D
Sbjct: 321 KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362
Score = 34.2 bits (77), Expect = 0.064
Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
Query: 71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKH---Q 127
NL ++ R + + +++ + E + + + +SLL+E K
Sbjct: 267 NLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326
Query: 128 KIILQLLYHLSIEDR-----VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALN 182
+ + +L +++ +S + ++L E + AL NLA++
Sbjct: 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALR-NLAVD 385
Query: 183 SRNAELMLKNRQLELL 198
+RN EL+ K+ L+
Sbjct: 386 ARNKELIGKHAIPNLV 401
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 42.7 bits (100), Expect = 1e-04
Identities = 36/295 (12%), Positives = 82/295 (27%), Gaps = 47/295 (15%)
Query: 47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLS--FDTNL 104
+ D ++ + Q +E + + + + Q + L
Sbjct: 33 SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92
Query: 105 REKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQ 164
+ II+ G +PK VS L + I + + +A TN S
Sbjct: 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFE------------SAWALTNIASGTSEQTKAVV 140
Query: 165 DDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHS-NV 223
D ++L L S +A + QA + N++
Sbjct: 141 DGGAIPAFISL-----LASPHAHIS----------EQAVW--------ALGNIAGDGSAF 177
Query: 224 KHYFVDY--IGDIANCVQKEKDENIKLE--CLGTLEVINFIGTAASDPISAEHFCKNSTV 279
+ + + I + + + T + N + + +
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL---CRNKNPAPPLDAVEQIL 234
Query: 280 DLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
L+ LL D E++ + + + + ++ + ++ LL
Sbjct: 235 PTLVRLLHH--NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287
Score = 27.3 bits (60), Expect = 8.7
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE 122
+ + +IE L +L +D+ + L + +N+ + K+G KL ++E
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI------SNIFQAAEKLGETEKLSIMIE 446
Query: 123 EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMS 154
E I L H + ++ S
Sbjct: 447 ECGGLDKIEALQRHENESVYKASLNLIEKYFS 478
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 41.5 bits (98), Expect = 1e-04
Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 7/133 (5%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL 121
+ + + + L ++L + + L L N++ + +I G LP LV LL
Sbjct: 46 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105
Query: 122 EEGKH--QKIILQLLYHLSI--EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCI 177
+ L L +++ ++++A+ + L+ +L + L AL
Sbjct: 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALS- 163
Query: 178 NLALNSRNAELML 190
N+A + +
Sbjct: 164 NIASGGNEQKQAV 176
Score = 38.0 bits (89), Expect = 0.002
Identities = 34/210 (16%), Positives = 76/210 (36%), Gaps = 21/210 (10%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-LREKIIKIGFLPKLVSLL 121
+ + + + ++ + L D S L+ L ++ N + +I G LP LV LL
Sbjct: 4 SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63
Query: 122 EEGKH--QKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDET-DNVLVALCI 177
+ L L +++ + + L+ LL +++ L AL
Sbjct: 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSN 122
Query: 178 NLALNSRNAELMLKNRQLELL--MIQAFTQKNILL-LKVIRNMSIHS-NVKHYFVDYIGD 233
+ + + ++ L L ++ + ++ + L + N++ K +
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE---- 178
Query: 234 IANCV------QKEKDENIKLECLGTLEVI 257
A + Q ++E I+ E LE +
Sbjct: 179 -AGALEKLEQLQSHENEKIQKEAQEALEKL 207
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 41.1 bits (96), Expect = 2e-04
Identities = 28/135 (20%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNL-REKIIKIGFLPKLVSLL 121
++++ L I KL ++L +++ ++Q + L NL F+ N + ++ ++ +P+L+ +L
Sbjct: 44 ARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVL 103
Query: 122 EEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
++ + +K I LL++LS D++K + T + L +++ +
Sbjct: 104 KQTRDLETKKQITGLLWNLSSNDKLKNLMI-TEALLTLTENIIIPFSGWPEGDYPKANGL 162
Query: 179 LALN-SRNAELMLKN 192
L + N L+N
Sbjct: 163 LDFDIFYNVTGCLRN 177
Score = 38.0 bits (88), Expect = 0.002
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 73 IEKLPRILMIEDSN--LQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLEEG--KHQ 127
+E+ +L + S+ + + F + R+++ ++ + KL+ LL+ Q
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 128 KIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNA 186
+ + L +L E + K A N + L+ +L +D ET + L NL+ N +
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 187 ELMLKN 192
LM+
Sbjct: 130 NLMITE 135
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 41.4 bits (96), Expect = 3e-04
Identities = 45/304 (14%), Positives = 98/304 (32%), Gaps = 35/304 (11%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL 121
K+Q+ L I KL +L + N+Q + L NL F T + + + + + VSLL
Sbjct: 36 AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL 95
Query: 122 EEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLV--------------EQ 164
+ QK + LL++LS D +K + + +L + +++ E
Sbjct: 96 RRTGNAEIQKQLTGLLWNLSSTDELKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREV 154
Query: 165 DDETDNVLVALCI-NLALNSRNAELMLKNRQL-ELLM--IQAFTQKNILLLKVIRN---- 216
D C+ NL+ + M L + LM +Q + K + N
Sbjct: 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214
Query: 217 -MSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINF-------IGTAASDPI 268
++ + + + E C + ++P
Sbjct: 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK 274
Query: 269 SAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMID 328
+ + + +NL+ + ++D + + + + + +
Sbjct: 275 GSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP 334
Query: 329 LLND 332
+
Sbjct: 335 QIAR 338
Score = 35.2 bits (80), Expect = 0.024
Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-LREKIIKIGFLPKLVSLLEEG--KHQKI 129
I K + L +D Q+ + + F ++++ ++G + KLV LL Q+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 130 ILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAEL 188
L +L K N + +++L + E L L NL+ E
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 189 MLKN 192
++ +
Sbjct: 124 LIAD 127
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 38.5 bits (89), Expect = 0.002
Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 6/141 (4%)
Query: 63 NKEQMANLNLIEKLPRILMIE-DSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSL 120
+EQ+ L + KL R+L + ++ L + L + + +++ L+
Sbjct: 116 IQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRA 175
Query: 121 LEEGKH--QKIILQLLYHLSIEDR-VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCI 177
+++ + LL +L + K + L+ ++ E ++VL ALC
Sbjct: 176 MQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC- 234
Query: 178 NLALNSRNAELMLKNRQLELL 198
+L + + +L L
Sbjct: 235 SLVTDFPQGVRECREPELGLE 255
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 38.8 bits (90), Expect = 0.002
Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLL 121
+ + ++ + ++L +L E + +Q+ L+ + N+ + +I G LP L LL
Sbjct: 291 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 350
Query: 122 EEGK--HQKIILQLLYHLSIEDR-VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
K +K + +++ + N + L+ +L V + A+ N
Sbjct: 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS-N 409
Query: 179 LALNSRN 185
+
Sbjct: 410 ASSGGLQ 416
Score = 35.4 bits (81), Expect = 0.024
Identities = 39/297 (13%), Positives = 93/297 (31%), Gaps = 46/297 (15%)
Query: 42 IVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFN-LSF 100
+P + + + SV + + ++ + L +D Q S LS
Sbjct: 58 FIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSR 117
Query: 101 DTN-LREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNM 159
+ + +I+ G +P+LV + E + + + +++A +A TN S
Sbjct: 118 EHRPPIDVVIQAGVVPRLVEFMRENQPEML------------QLEAAWALTNIASGTSAQ 165
Query: 160 LLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSI 219
V D + + + L L + + E+ QA + N++
Sbjct: 166 TKVVVDADAVPLFIQL-----LYTGSVEVK----------EQAIW--------ALGNVAG 202
Query: 220 HSNVKHYFVDYIGDIANCVQ--KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNS 277
S +V + + ++ TL + + +
Sbjct: 203 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL-----CRGKKPQPDWSVVSQ 257
Query: 278 TVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
+ L L+ D E ++ + + + + P +++LL+ +
Sbjct: 258 ALPTLAKLIY--SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Score = 30.0 bits (67), Expect = 1.3
Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 8/107 (7%)
Query: 65 EQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG 124
+ + I+ L +L I D+ + TL L N+ ++ + + + G
Sbjct: 422 RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481
Query: 125 KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNV 171
+KI + + + Y ++ E+D + +
Sbjct: 482 GMEKIF-NCQQNENDK-------IYEKAYKIIETYFGEEEDAVDETM 520
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.007
Identities = 46/309 (14%), Positives = 98/309 (31%), Gaps = 125/309 (40%)
Query: 1 M-MNEYYHRNLHIEVTHDTYPTRNAGVKAQR-FDRGNC---NCYGL----IV---PKSK- 47
M M+ Y T AQ ++R + + YG IV P +
Sbjct: 1631 MGMDLY-----------KTSKA------AQDVWNRADNHFKDTYGFSILDIVINNPVNLT 1673
Query: 48 -REGRQDSRKLSVYHVNKEQM---ANLNLIEKLPRILMIEDSNLQSST-------LKL-- 94
G + +++ N M ++ K +I + + S T L
Sbjct: 1674 IHFGGEKGKRI---RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 95 -----LFNLS---FDTNLREKIIKIGFLPK--------------LVSL-----LEEGKHQ 127
L + F+ L+ K G +P L SL +E
Sbjct: 1731 FTQPALTLMEKAAFED-LKSK----GLIPADATFAGHSLGEYAALASLADVMSIESL--- 1782
Query: 128 KIILQLLYH--LSIEDRVK---------AMFAYT-NCMSLLMNM----LLVEQ-DDETDN 170
++++++ ++++ V M A ++ + +VE+ T
Sbjct: 1783 ---VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 171 VL-VALCINLALNSRNAELMLKNRQ---------LELL--MIQAFTQKNILLLKVIRNMS 218
++ + N N E N+Q L+ + ++ + I ++++ +++S
Sbjct: 1840 LVEIV---NY-----NVE----NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 219 IHSNVKHYF 227
+ H F
Sbjct: 1888 LEEVEGHLF 1896
Score = 30.0 bits (67), Expect = 1.4
Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 36/124 (29%)
Query: 43 VPKSKREGRQDSRKLSV---YHVNKEQMANLNLIEKLPRI--------LMI-----ED-S 85
+P S+R+ + +R L V +H + A+ + + L + + I D S
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 86 NLQSSTLKLLFNLSFDTNLR-----EKIIK------IGFLP-------KLVSLLEEGKHQ 127
+L+ + + + D +R E + + F P L ++G
Sbjct: 467 DLRVLSGSISERI-VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525
Query: 128 KIIL 131
++I+
Sbjct: 526 RVIV 529
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.13
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 10/40 (25%)
Query: 241 EKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVD 280
EK KL+ +L++ A D SA +T++
Sbjct: 18 EKQALKKLQ--ASLKLY------ADD--SAPALAIKATME 47
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural
genomics, structural of infectious diseases; HET: MSE
AMP GOL; 2.00A {Francisella tularensis subsp} PDB:
3qtt_A*
Length = 264
Score = 29.4 bits (67), Expect = 1.5
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 179 LALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYI 231
L L+SRN L + ++ + + Q + L+ + N + K + YI
Sbjct: 185 LPLSSRNKNLTSTDIEIANKIYEILRQDDFSNLEELTNKINSTGAK---LQYI 234
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 29.4 bits (65), Expect = 1.8
Identities = 7/73 (9%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 105 REKIIKIGFLPKLVSLLEEGKH--QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLV 162
+ I++ + L + ++ +++++Y+++ A + +++ L
Sbjct: 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLAN 509
Query: 163 EQDDETDNVLVAL 175
+QD ++
Sbjct: 510 KQDIGEPIRILGC 522
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 29.0 bits (65), Expect = 2.0
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 271 EHFCKNSTVDLLINLL--KEMQEDDEIVLQILYVFYQICR 308
CK V+ L + + D +L +FYQ CR
Sbjct: 113 TELCKGQLVEFLKKMESRGPLSCD-----TVLKIFYQTCR 147
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 7.6
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 9/41 (21%)
Query: 239 QKEKDENIKL---ECLGTLEVINFIGTAASDPISAEHFCKN 276
++ + NI L EC I + C
Sbjct: 13 RRGPNLNIVLTCPECKVYPPKI------VERFSEGDVVCAL 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.391
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,821,090
Number of extensions: 278548
Number of successful extensions: 571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 69
Length of query: 334
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 240
Effective length of database: 4,077,219
Effective search space: 978532560
Effective search space used: 978532560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.5 bits)