RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12638
(334 letters)
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 41.8 bits (96), Expect = 8e-05
Identities = 17/68 (25%), Positives = 25/68 (36%)
Query: 57 LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPK 116
L+ N+ + LN I ++L N+Q +L L+ D E I G
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 505
Query: 117 LVSLLEEG 124
L LL
Sbjct: 506 LTELLHSR 513
Score = 39.1 bits (89), Expect = 6e-04
Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 4/128 (3%)
Query: 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK-IGFLPKLVSLLEEGKH---QK 128
I +L ++L ED + + ++ LS R I++ + +V ++ +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 129 IILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAEL 188
L++LS + + L+ ML D + L L
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 189 MLKNRQLE 196
+ L+
Sbjct: 139 VRLAGGLQ 146
Score = 37.6 bits (85), Expect = 0.002
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 82 IEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKH--QKIILQLLYHLSI 139
+ + L L+ D + R I + +P V LL Q++ +L L+
Sbjct: 430 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489
Query: 140 EDRVKAMFAYTNCMSLLMNML 160
+ + L +L
Sbjct: 490 DKEAAEAIEAEGATAPLTELL 510
Score = 35.3 bits (79), Expect = 0.010
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 236 NCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEI 295
V+ + E I C G L A D + +T+ L + LL + I
Sbjct: 425 QFVEGVRMEEIVEGCTGAL------HILARDVHNRIVIRGLNTIPLFVQLLY--SPIENI 476
Query: 296 VLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
V ++ + I+ A A + +LL+ N
Sbjct: 477 QRVAAGVLCELAQDKEAAE-AIEAEGATAPLTELLHSRN 514
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 41.4 bits (95), Expect = 1e-04
Identities = 40/247 (16%), Positives = 83/247 (33%), Gaps = 4/247 (1%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLL 121
K+Q+ L I KL +L + N+Q + L NL F T + + + + + VSLL
Sbjct: 36 AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL 95
Query: 122 EEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
+ QK + LL++LS D +K L +++ N ++ +
Sbjct: 96 RRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155
Query: 179 LALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCV 238
NA L+N Q + L+ ++ + + + +
Sbjct: 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215
Query: 239 QKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQ 298
++ A ++ S F S + N + E++
Sbjct: 216 HNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG 275
Query: 299 ILYVFYQ 305
++++
Sbjct: 276 SGWLYHS 282
Score = 39.4 bits (90), Expect = 5e-04
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 4/131 (3%)
Query: 73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-LREKIIKIGFLPKLVSLLEEGKH--QKI 129
I K + L +D Q+ + + F ++++ ++G + KLV LL Q+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 130 ILQLLYHLSIEDRV-KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAEL 188
L +L K N + +++L + E L L NL+ E
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 189 MLKNRQLELLM 199
++ + L
Sbjct: 124 LIADALPVLAD 134
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human
(Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 32.1 bits (72), Expect = 0.087
Identities = 17/150 (11%), Positives = 36/150 (24%), Gaps = 4/150 (2%)
Query: 82 IEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQ-KIILQLLYHLSIE 140
I + + L N+ + + + K K + L
Sbjct: 34 ITTETSK---ILLQKNMQIANHTLKYGTQARKFDVNQLQNTTIKRIIKKVQDLERAALPA 90
Query: 141 DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI 200
++ M ++ V + + L N+ SR E +L +
Sbjct: 91 QELEEYNKILLDMETTYSVATVCHPNGSCLQLEPDLTNVMATSRKYEDLLWAWEGWRDKA 150
Query: 201 QAFTQKNILLLKVIRNMSIHSNVKHYFVDY 230
+ + N + N D
Sbjct: 151 GRAILQFYPKYVELINQAARLNGYVDAGDS 180
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 31.6 bits (70), Expect = 0.14
Identities = 39/278 (14%), Positives = 90/278 (32%), Gaps = 8/278 (2%)
Query: 63 NKEQMANLNLIEKLPRILMIEDSNLQ-SSTLKLLFNLSFDTN-LREKIIKIGFLPKLVSL 120
+ + ++ + L +D Q S+T+K LS + + +I+ G +P+LV
Sbjct: 68 QQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF 127
Query: 121 LEEGKHQKIILQLLYHL----SIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALC 176
+ E + + + L+ + L S + + + L + +L + + + AL
Sbjct: 128 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALG 187
Query: 177 INLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIAN 236
++ + +L+ +E ++ + K L+ +S K D+ + +
Sbjct: 188 NVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW--SVVS 245
Query: 237 CVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIV 296
+ I TL + + SD + E +
Sbjct: 246 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 305
Query: 297 LQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
L I Q ++ + LL+
Sbjct: 306 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK 343
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 31.3 bits (69), Expect = 0.15
Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Query: 73 IEKLPRILMIEDSNLQSSTLKLLFN-LSFDTN-LREKIIKIGFLPKLVSLLEEGKHQKII 130
+E + + + + Q + LS + + II+ G +PK VS L + I
Sbjct: 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74
Query: 131 LQ----LLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNA 186
+ L S + +++L ++ + AL S
Sbjct: 75 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134
Query: 187 ELMLKNRQLE 196
+L++K+ ++
Sbjct: 135 DLVIKHGAID 144
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus,
different strains [TaxId: 11320]}
Length = 388
Score = 25.9 bits (57), Expect = 7.5
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 23 NAGVKAQRFDRGNCNCYGLIVPKSKREG 50
N GVK + G G + + R G
Sbjct: 265 NNGVKGFSYLDGVNTWLGRTISIASRSG 292
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.391
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,177,049
Number of extensions: 53216
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 16
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)