BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12639
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIP 60
+ +H HTG KPYAC EC + F++ + L+ H H + Y+C C +SF + L
Sbjct: 93 LRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHT 151
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
H R HTGEKPY C C + R L +H +
Sbjct: 152 HQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLR 63
H HTG KPY C EC + F++ + L+ H H + Y C C +SF ++L H R
Sbjct: 68 HQRTHTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 64 VHTGEKPYACNLCTVRYLRSYELVLHLK 91
HTGEKPY C C + R L H +
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQR 154
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIP 60
+ H HTG KPY C EC + F+ L H H + Y+C C +SF ++ L
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRA 95
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
H R HTGEKPYAC C +S+ + HL+
Sbjct: 96 HQRTHTGEKPYACPECG----KSFSQLAHLR 122
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
+ L G KPYAC EC + F+R+ L H H + Y+C C +SF K L H
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARNPYA 103
R HTGEKPY C C + + L H + PYA
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRT---HTGEKPYA 107
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIP 60
+ +H HTG KPY C EC + F+R L H H + Y+C C +SF + L
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTH-QRTHTGEKPYKCPECGKSFSRRDALNV 179
Query: 61 HLRVHTGEK 69
H R HTG+K
Sbjct: 180 HQRTHTGKK 188
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 1 MESHLMLHTGAKPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYL 58
++ H HTG KPY C +C+++F+R+ +LK H H + ++C C R F +L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHL 82
Query: 59 IPHLRVHTGEKPYACNL--CTVRYLRSYELVLH 89
H R HTGEKP++C C ++ RS ELV H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 KPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+PYAC CD++F+R+++L H + H + ++C C R+F +L H+R HTGEK
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 70 PYACNLCTVRYLRSYELVLHLK 91
P+AC++C ++ RS E H K
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNL 35
+ +H+ HTG KP+AC C +KF R+ + K H +
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 KPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+PYAC CD++F+R++ L H + H + ++C C R+F +L H+R HTGEK
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 70 PYACNLCTVRYLRSYELVLHLK 91
P+AC++C ++ RS E H K
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNL 35
+ +H+ HTG KP+AC C +KF R+ + K H +
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 KPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+PYAC CD++F+R+ +L H + H + ++C C R+F +L H+R HTGEK
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 70 PYACNLCTVRYLRSYELVLHLK 91
P+AC++C ++ RS E H K
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNL 35
+ +H+ HTG KP+AC C +KF R+ + K H +
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 KPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+PYAC CD++F+R+ +L H + H + ++C C R+F +L H+R HTGEK
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 70 PYACNLCTVRYLRSYELVLHLK 91
P+AC++C ++ RS E H K
Sbjct: 61 PFACDICGRKFARSDERKRHTK 82
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNL 35
+ +H+ HTG KP+AC C +KF R+ + K H +
Sbjct: 49 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 KPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+PYAC CD++F+R+ +L H + H + ++C C R+F +L H+R HTGEK
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 70 PYACNLCTVRYLRSYELVLHLK 91
P+AC++C ++ RS E H K
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNL 35
+ +H+ HTG KP+AC C +KF R+ + K H +
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 12 KPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+PYAC CD++F+ +S L H + H + ++C C R+F +L H+R HTGEK
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 70 PYACNLCTVRYLRSYELVLHLK 91
P+AC++C ++ RS E H K
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNL 35
+ +H+ HTG KP+AC C +KF R+ + K H +
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 12 KPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+PYAC CD++F+++ L H + H + ++C C R+F +L H+R HTGEK
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 70 PYACNLCTVRYLRSYELVLHLK 91
P+AC++C ++ RS E H K
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNL 35
+ +H+ HTG KP+AC C +KF R+ + K H +
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKPY 71
KPY C EC + F+++S L+ H H + Y+C C +SF S L H R HTGEKPY
Sbjct: 3 KPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 72 ACNLCTVRYLRSYELVLHLK 91
C C + RS L H +
Sbjct: 62 KCPECGKSFSRSDHLSRHQR 81
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIP 60
++ H HTG KPY C EC + F+++S L+ H H + Y+C C +SF +L
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEKPYKCPECGKSFSRSDHLSR 78
Query: 61 HLRVHTGEK 69
H R H +K
Sbjct: 79 HQRTHQNKK 87
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 12 KPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+PYAC CD++F++ + L H + H + ++C C R+F ++ L H+R HTGEK
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 70 PYACNLCTVRY----LRSYELVLHLKK 92
P+AC++C ++ R+ +HL++
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 12 KPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+PYAC CD++F++ + L H + H + ++C C R+F + L H+R HTGEK
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 70 PYACNLCTVRY----LRSYELVLHLKK 92
P+AC++C ++ R +HL++
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGE 68
+G K Y C +C + F S+ H ++ H Y C C + F K +L+ H+++HTG
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 69 KPYACNLCTVRYLRSYELVLHLKKCHREDARNPYAPAFVDVNTV 112
KPY CN+C R++ H+ C + Y A + NT
Sbjct: 64 KPYECNICAKRFMWRDSFHRHVTSCTKS-----YEAAKAEQNTT 102
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 14 YACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
+ C C + F R+S L H L H Y C +C + F KS + H +HTGEKP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 74 NLCTVRYLRSYELVLHLKK 92
+C + +S L+ H +K
Sbjct: 61 QVCGKAFSQSSNLITHSRK 79
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIP 60
+ +HL++H+ +PY C C ++F++ S +K H H + ++C C ++F S LI
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLIT 75
Query: 61 HLRVHTG 67
H R HTG
Sbjct: 76 HSRKHTG 82
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 31/94 (32%)
Query: 1 MESHLMLHTGAKPYACT--ECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYL 58
+++HL HTG KPY CT CD +F R+ +L HY
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY------------------------- 67
Query: 59 IPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKK 92
R HTG KP+ C +C + RS L LH+K+
Sbjct: 68 ----RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECC--HCARSFPCKSYL 58
M HL H G + + C EC + F +SKLK H L H + ++C C + F L
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNL 80
Query: 59 IPHLRVHTGEKPYAC--NLCTVRYLRSYELVLHL 90
H+R+HTG++PY C + C ++ +S L H+
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 19 CDQKFNRNSKLKIHYNLAHCTG-EMYECCHCARSFPCKSYLIPHLRVHTGEKPYACNL-- 75
C + F NS ++ H H G ++ C C ++F S L H VHTGEKP+ C
Sbjct: 13 CTKMFRDNSAMRKHL---HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 76 CTVRYLRSYELVLHLKKCHREDARNPYAPAFVDVN 110
C R+ + L H+ + H D PY F N
Sbjct: 70 CGKRFSLDFNLRTHV-RIHTGD--RPYVCPFDGCN 101
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 4 HLMLHTGAKPYACT--ECDQKFNRNSKLKIHYNLAHCTGEMYECCH--CARSFPCKSYLI 59
H+ HTG KP+ CT C + ++R LK H +H + Y C H C+++F S
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 60 PHL-RVHTGEKPYACNL--CTVRYLRSYELVLHLKKCH 94
H R H+ EKPY C L CT RY L H+K H
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 19 CDQKFNRNSKLKIHYNLAHCTGEMYE-CCHCA------RSFPCKSYLIPHLRVHTGEKPY 71
C Q+F+ +L H N H GE E CH R F + L+ H+R HTGEKP+
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 72 ACNL--CTVRYLRSYELVLHLK 91
C C Y R L HL+
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLR 90
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIH--YNLAHCTGEMYECCHCARSFPCKSYL 58
++ H HTG KP+ C +C + + R L H N + + +++ C C +F + L
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 59 IPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCH 94
H+ HTGE PY C+ C+ ++++ +L H+ K H
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 44 ECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
EC C + F K YL H R HTGEKP+ C C Y R L+ H
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
++C C R+F +L H+R HTGEKP+AC++C ++ RS E H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAH 37
+ +H+ HTG KP+AC C +KF R+ + K H ++ H
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 11 AKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKP 70
+ P+ C C + F+R KLK H H + Y+C C + S L HLR+H+ E+P
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 71 YACNLCTVRYLRSYELVLHLK 91
+ C +C S +L +HL+
Sbjct: 65 FKCQICPYASRNSSQLTVHLR 85
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHT 66
KPY C EC + F+R+S L + + H + Y+C C ++F S LI H R+HT
Sbjct: 13 KPYGCVECGKAFSRSSIL-VQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
Y C C ++F S L+ H RVHTGEKPY C C + ++ L+ H +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTG 40
H +HTG KPY C EC + F++NS L I++ H +G
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGL-INHQRIHTSG 68
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
Y+C C SF K L H VHTGEKPY CN+C ++ R L H +
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNL 35
+ SH +HTG KPY C C +FNR + LK H +
Sbjct: 33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKP 70
KPY C C F L H + H + Y C C F + L H R+H+GEKP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 19 CDQKFNRNSKLKIHYNLAHCTGE--------MYECCHCARSFPCKSYLIPHLRVHTGEKP 70
CD+ F+ +L H + H G EC +SF K L+ H+RVHTGEKP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 71 YACNL--CTVRYLRSYELVLHLK 91
+ C C + RS L +H +
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKR 113
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 34/105 (32%)
Query: 3 SHLMLHTGAKPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIP 60
+H+ +HTG KP+ C C + F R+ LKIH
Sbjct: 80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK--------------------------- 112
Query: 61 HLRVHTGEKPYACNL--CTVRYLRSYELVLHLKKCHREDARNPYA 103
R HTGEKP+ C C R+ S + H+ H D P +
Sbjct: 113 --RTHTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTSDKSGPSS 154
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
Y+C C +SF S L H R HTGEKPY C+ C +++ L+ H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHLRVHTGEKP 70
+ Y C EC + F+ +S L H TGE Y+C C ++F +S+LI H RVHTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTH--TGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Query: 71 YA 72
+
Sbjct: 75 SS 76
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 31/94 (32%)
Query: 1 MESHLMLHTGAKPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYL 58
+++HL HTG KPY C C KF R+ +L HY
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY------------------------- 58
Query: 59 IPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKK 92
R HTG +P+ C C + RS L LH+K+
Sbjct: 59 ----RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 88
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 44 ECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHR 95
EC +C + F YL HLR HTGEKPY C C + L HL++ H+
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIH 32
HL HTG KPY C C+ + + L+ H
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 31/94 (32%)
Query: 1 MESHLMLHTGAKPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYL 58
+++HL HTG KPY C C KF R+ +L HY
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY------------------------- 57
Query: 59 IPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKK 92
R HTG +P+ C C + RS L LH+K+
Sbjct: 58 ----RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 6 MLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVH 65
++ G Y C C + + + L+ H+N+ H + Y C +C + FP Y H H
Sbjct: 15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNI-HSWEKKYPCRYCEKVFPLAEYRTKHEIHH 73
Query: 66 TGEKPYACNLCTVRYLRSYELVLHLKKCHRED 97
TGE+ Y C C ++ + H+K H +D
Sbjct: 74 TGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 26 NSKLKI----HYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKPYACNLC 76
N ++K+ HY L Y C C RS+ C + L H +H+ EK Y C C
Sbjct: 2 NKRMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYC 56
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIP 60
+ H +H+ K Y C C++ F ++ + + + H Y+C C +SF ++
Sbjct: 38 LRRHFNIHSWEKKYPCRYCEKVFPL-AEYRTKHEIHHTGERRYQCLACGKSFINYQFMSS 96
Query: 61 HLRVHTGEKP 70
H++ + P
Sbjct: 97 HIKSVHSQDP 106
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKP 70
Y C C ++F KSYLI H+R HTGEKP
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 48 CARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCH 94
C R+F + +L H R HT EKPY C LC + R L+ H +K H
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 32.3 bits (72), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 14 YACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL-RVHTG 67
+ C C + F R LK HY +H + Y C C R+F + LI H ++H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYE 44
++ H HT KPY C C++ F R L H H +G + E
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH-SGNLGE 60
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 48 CARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
C R F L H+R+HTG+KP+ C +C + RS L H++
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 12 KPYACT--ECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHT 66
+PYAC CD++F+R+ +L H + H + ++C C R+F +L H+R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIH 32
+ H+ +HTG KP+ C C + F+R+ L H
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKP 70
Y C C ++F KSYLI H+R H+GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCHREDARNP 101
EKPY C+ C + L++H++ E P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 48 CARSFPCKSYLIPHLRVHTGEKPYACNL--CTVRYLRSYELVLHLK 91
C +++ S+L H R HTGEKP++C+ C R+ RS EL H +
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 1 MESHLMLHTGAKPYACT--ECDQKFNRNSKLKIH 32
+++H HTG KP++C+ C+++F R+ +L H
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
YEC C ++F KS LI H R+HTGEKP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSG 42
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
+EC HC +SF K L+ H R+HTGEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
Y C C + F KSYLI H R+HTGEK
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 66 TGEKPYACNLCTVRYLRSYELVLH 89
+GEKPY CN C + L++H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVH 29
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCT-GEMYECCHCARSFPCKSYLI 59
+ H + H+G KPY+C C +F R ++ H + G+ Y C C + F +L
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN 82
Query: 60 PHLR-VHTG 67
H++ VH+G
Sbjct: 83 GHIKQVHSG 91
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGE 68
+G+ AC C + F L H L+H + Y C C F K + H+R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 69 --KPYACNLCTVRYLRSYELVLHLKKCH 94
KPY C C + R L H+K+ H
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 48 CARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARNPY 102
C + F +L H H+GEKPY+C +C +R+ R + H++ H PY
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPY 66
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKPY 71
K + C C + F ++ L IH H Y C C ++F + +L H +H+ EKP+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 72 ACNLCTVRYLRSYELVLH 89
C C + +S L +H
Sbjct: 75 KCQECGKGFCQSRTLAVH 92
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 39 TGEMYECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
T + + C C R F L+ H R HT E+PY C++C + R L H
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLR 63
H HT +PY C C + F R L+ H + H + ++C C + F L H
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEKPFKCQECGKGFCQSRTLAVHKT 94
Query: 64 VH 65
+H
Sbjct: 95 LH 96
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNL 35
+ H +H+ KP+ C EC + F ++ L +H L
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
+EC C +SF S L H R+HTGEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSG 42
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
YEC C ++F ++LI H RVHTGEKP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSG 42
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
+EC C ++F KS LI H R HTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSG 42
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 1 MESHLMLHTGAKPYACTE--CDQKFNRNSKLKIHYNLAHCTGEMYECCH---CARSFPCK 55
+ H + HTG K + C CD +F + +K H+N H CH C ++F
Sbjct: 60 LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKH 119
Query: 56 SYLIPHLRVHTGEKPYAC--NLCTVRY-----LRSYELVLHLKKCHREDA 98
+ L H HT + PY C C R+ L+ +E V C ++D+
Sbjct: 120 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 169
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
YEC C ++F KS LI H R HTGEKP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSG 42
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 12 KPYACT--ECDQKFNRNSKLKIHYNLAHCTGEMYECCH---CARSFPCKSYLIPHLRVHT 66
K Y C+ +C +N+N KL+ H L+ TGE C C + F +L H HT
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAH--LSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 59
Query: 67 GEKPYACNL--CTVRYLRSYELVLHLKKCH 94
GEK + C+ C +R+ + H + H
Sbjct: 60 GEKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARNPYAP 104
R H+GEKPY C +C R+ +S + +H+ + H E+ + P
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCP 49
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHYNLAHCTG-EMYECCHCARSFPCKSYLIPHLR 63
H+G KPY C C +F ++ +K+H H + C HC KS L HLR
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTG---EMYECCHCARSFPCKSYLI 59
S HTG KPYAC+ CD+ F + L +H+ H + C C ++F ++ +
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA 64
Query: 60 PH 61
H
Sbjct: 65 RH 66
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLHLKKCH 94
R HTGEKPYAC+ C + + L +H K+ H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHL-RVHTGE---KPYACNLCTVRYLRSYELVLHLKKC 93
TGE Y C HC ++F K L H R H + C+ C + R + H C
Sbjct: 11 TGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Query: 94 HREDA 98
D
Sbjct: 71 AGPDG 75
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++C C R F KS+L H R+HTGEKP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSG 42
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 19 CDQKFNRNSKLKIHYNLAHCTGE--------MYECCHCARSFPCKSYLIPHLRVHTGEK 69
CD+ F+ +L H + H G EC +SF K L+ H+RVHTGEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGE 68
YEC C ++F KS LI H R HTGE
Sbjct: 11 YECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 32.3 bits (72), Expect = 0.091, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
+G KPY CT+C + F S+L IH
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIH 29
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 41 EMYECCHCARSFPCKSYLIPHLRVHTGE 68
+++EC +C ++F KS LI H R+HTGE
Sbjct: 9 KLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y C CA++F KS LI H R HTG KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSG 42
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KPY C++C + F+ S+L +H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVH 31
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y C C ++F K+ L H R+HTGEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSG 42
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
+EC C ++F KS L H ++HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSG 42
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
K + CTEC + F R S L +H +
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKI 34
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
YEC C +SF KS L H R+HTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSG 42
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGE 41
KPY C++C + F + S+L +H + TGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIH--TGE 38
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCHREDARNPYAPA 105
EKPY C+ C +++ +L +H ++ H NP P+
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVH-QRIH--TGENPSGPS 44
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
+EC C +SF S LI H R+HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSG 42
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGE 41
KP+ C EC + F+ NS+L +H + TGE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIH--TGE 38
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
YEC C +SF KS L H ++HTGEKP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSG 42
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
KPY C+ C + F + S+L +H +
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQI 34
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y C C ++F KS L H R HTGEKP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSG 42
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++C C +SF ++LI H R+HTGEKP
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSG 42
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + F S+L H R+HTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSG 42
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.013, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 41 EMYECCHCARSFPCKSYLIPHLRVHTGEKP 70
+++EC C ++F S L+ H R+HTGE P
Sbjct: 9 KLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C ++F S L H RVHTGEKP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSG 42
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
YEC C ++F KS L H R+H GEKP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSG 42
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y C C +SF KS+L H R+HTGEKP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSG 42
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y C C ++F +S L H ++HTGEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSG 42
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 41 EMYECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++++C C ++F S L H R+HTGEKP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSG 42
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.018, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKP 70
Y C C ++F KS LI H VHTG KP
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.0 bits (71), Expect = 0.12, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
+G KPY+C EC + F S+L +H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH 29
Score = 29.3 bits (64), Expect = 0.77, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 66 TGEKPYACNLCTVRYLRSYELVLH 89
+GEKPY+CN C + +L++H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH 29
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGE 68
Y C C ++F KSYLI H R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
YEC C ++F +S L H +HTG+KP
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSG 42
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKP 70
Y C C ++F K LI H+RVHTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + F SYL H R+HTGEKP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSG 42
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 34.3 bits (77), Expect = 0.023, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 42 MYECCHCARSFPCKSYLIPHLRVHTGEKP 70
+YEC C +SF K L H R+HTG P
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIHYNLAHCTG 40
+G + Y C EC + F + L +H + +G
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSG 37
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 34.3 bits (77), Expect = 0.023, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGE 68
Y C C ++F KS LI H R+HTGE
Sbjct: 11 YVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 32.3 bits (72), Expect = 0.088, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIHYNLAHCTGE 41
+G KPY C EC + F S+L IH + TGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH--TGE 36
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 66 TGEKPYACNLCTVRYLRSYELVLH 89
+G+KPY CN C + +L++H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIH 29
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C ++F S L H R+HTGEKP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSG 42
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
YEC C+++F K++L H + HTGEKP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSG 42
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCHREDARNPYA 103
EKPY C +C+ + + L H K E P +
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y C C ++F +S LI H ++HTGEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSG 42
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKP 70
YEC C ++F K LI H R H GEKP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCHREDARNP 101
E PY C+ C + R Y+L+ H + E P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCHREDARNPYA 103
E+PY CN C + R L+ HLK+ RE + P +
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
+PY C EC + F R+S L H
Sbjct: 11 RPYGCNECGKNFGRHSHLIEH 31
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
Y C C ++F S+LI HL+ H EK
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREK 39
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y C C +SF S L+ H RVH+GEKP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSG 42
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.037, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
T KPY C+EC + F RNS+L +H
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVH 31
Score = 32.3 bits (72), Expect = 0.088, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGE 68
YEC C ++F S LI H R H+GE
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 66 TGEKPYACNLCTVRYLRSYELVLH 89
T EKPY C+ C ++R+ +L++H
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVH 31
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKP 70
Y C +C ++F + L+ H R+HTGEKP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCHREDARNP 101
EKPY C+ C + S ELV H + E P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++C C ++F +L HLR+HTGEKP
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSG 42
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + F S+L H RVHTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++C C +S+ + +L H RVHTGEKP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 33.1 bits (74), Expect = 0.046, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGE 68
Y C C ++F KS+ I H R+HTGE
Sbjct: 11 YVCTECGKAFIRKSHFITHERIHTGE 36
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 66 TGEKPYACNLCTVRYLRSYELVLH 89
+GEKPY C C ++R + H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITH 29
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++C C + F S+L H RVHTGEKP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSG 42
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGE 68
YEC C ++F KS L+ H R HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KPY C EC + FN S L +H
Sbjct: 11 KPYECNECQKAFNTKSNLMVH 31
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + F S+L+ H +HTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSG 42
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + F S L H ++HTGEKP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSG 42
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGE 41
K Y C EC + F+RNS+L H + TGE
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIH--TGE 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.076, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGE 68
YEC C ++F K LI H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
Score = 30.8 bits (68), Expect = 0.24, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
+G PY C+EC + FNR +L H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISH 29
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 32.3 bits (72), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
Y C HC R F L H+R+HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y C C ++F S L H R+HTGEKP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSG 42
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 32.0 bits (71), Expect = 0.11, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 71 YACNLCTVRYLRSYELVLHLKKCHREDARNPYAPAFVD 108
Y CN+C R+ L HL+ HR+DA A ++
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMIN 154
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 32.0 bits (71), Expect = 0.11, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 71 YACNLCTVRYLRSYELVLHLKKCHREDARNPYAPAFVD 108
Y CN+C R+ L HL+ HR+DA A ++
Sbjct: 99 YVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMIN 136
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + F S+L H RVHTG KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSG 42
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++C C + F S L H RVHTGEKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSG 42
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C +SF K L+ H R+HT EKP
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSG 42
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIHYNLAHCTG 40
+G KPY C EC + F++ L +H L +G
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSG 37
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKP 70
Y+C C +SF + L H R+HTG P
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 39 TGEMYECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDA 98
+ E + C C SF K HLR+ + + C C + S L H+ KCH +
Sbjct: 25 SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN 84
Query: 99 R 99
R
Sbjct: 85 R 85
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
TG KP+ C +CD+ F+R+ L +H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALH 30
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLHLKK 92
R TG KP+ C C + RS L LH K+
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y C C ++F +S LI H ++HT +KP
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSG 42
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 55 KSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHRE 96
K+ L H R+H ++P+ CN C+ + L H+KK H +
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
KP+ C EC + F+R S L +H+ L
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKL 34
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++C C + F +S L H ++HTGEKP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSG 42
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGE 68
YECC C + F K L+ H + H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
+G KPY C EC + F ++S L IH
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIH 29
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGE 68
Y C C ++F S L H RVHTGE
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + F C+ L H VHTGEKP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSG 42
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C ++F S L H +HTGEKP
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSG 42
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KPY C EC + F +S L H
Sbjct: 11 KPYKCNECGKAFRAHSNLTTH 31
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
+ C C + F S I H R+HTGEKP
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSG 42
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + F S+L H R+HTG KP
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSG 42
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
KPY C EC + F +NS L H +
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRI 34
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C +SF S L H R+HTGEKP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSG 42
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 0.19, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
+G KPY C++C + F S+L +H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVH 29
Score = 30.4 bits (67), Expect = 0.34, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTG 67
Y C C ++F KS LI H +HTG
Sbjct: 11 YVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 66 TGEKPYACNLCTVRYLRSYELVLH 89
+GEKPY C+ C + +L++H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVH 29
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
+ C C + F K+ LI H ++HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSG 42
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + F S+L H +HTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
KPY C EC + F +NS L H +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGI 34
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + F S+L H +HTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
KPY C EC + F +NS L H +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGI 34
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIHYNL 35
+G KPY+C EC + F+ N++L H +
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKM 32
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 41 EMYECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++Y C C +SF L+ H R+H+GEKP
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSG 42
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C ++F S+L+ H VH+GE+P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSG 42
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 66 TGEKPYACNLCTVRYLRSYELVLHLK 91
+GEKPY+C +C +R+ R + H++
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVR 31
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
+G KPY+C C +F R ++ H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYH 29
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 39 TGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+G+++ C +C + F K L HLR+HT EK
Sbjct: 6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
YEC C ++F + L H RVH+GEKP
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSG 42
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
TG KP+ C +CD F+R+ L +H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALH 26
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 43 YECCHCARSFPCKSYLIPHLR-VHTGEKP 70
YEC C ++F + LI H R HTGEKP
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGE 41
KPY C EC + F +N+ L H+ H TGE
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYH-TGE 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
YEC C ++F + L H R+H+G+KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSG 42
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++C C ++F L H R+HTGEKP
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSG 42
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKP 70
Y C C ++F S L H +HTGEKP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KPY C EC + F+ S L H
Sbjct: 11 KPYMCNECGKAFSVYSSLTTH 31
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C ++F +S L H H+GEKP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSG 42
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KPY C EC + F S L IH
Sbjct: 11 KPYKCNECGKAFRARSSLAIH 31
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTG 67
YEC C ++F KS LI H R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 45 CCHCARSFPCKSYLIPHLRVHTGEKP 70
C C ++F S L H R+H+GEKP
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
+G KP C EC + F ++S L H
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKH 29
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
Y C C S L H+R HT +PY C C + L H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 14 YACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLR 63
Y C EC + + S LK H H Y C +C SF K L H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIH 32
++ H+ HT +PY CT C+ F L H
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 0.40, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKP 70
+ C C ++F KSYL+ H + H EKP
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
+G KP+ C+ C++ F+ S L +H
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVH 29
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
Y+C C ++F +S L H +HTGEK
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
+ C C +SF +S L H +HTGEKP
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKPSG 42
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIH 32
T KP+ C CD+ F + S L H
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH 31
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 39 TGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+G+ Y+C C+ + K+ L HLR HTGEK
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KPY C++C + F R S L IH
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIH 31
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
Y+C C ++F KS L H + HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
Y+C C +SF KS L H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KPY C++C + F S+L+IH
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIH 31
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C ++F S H R+HTG++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSG 42
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
KPY C EC + F NS H L
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRL 34
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHT 66
++C C ++F C YL H R+HT
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHT 36
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 44 ECCHCARSFPCKSYLIPHLRVHTGEK 69
+C C ++F S LI H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + F S+L H +HTGEKP
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSG 42
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGE 41
KPY C EC + F RNS L H L H TGE
Sbjct: 11 KPYKCHECGKVFRRNSHLARH-QLIH-TGE 38
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
++C C R F +L H R HTGEK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KP+ C C +KF+R+ LK H
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTH 21
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 28.9 bits (63), Expect = 0.91, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 9 TGAKPYACT--ECDQKFNRNSKLKIH 32
TG KP+ CT +CD+ F+R+ L +H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALH 28
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
++C C + F +S+L HLR+H+ EK
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCHREDARNPYA 103
E+P+ CN C + R L HL+ RE + P +
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
+P+ C EC + F R S L H L
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRL 34
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCHREDARNPYA 103
EKPY+CN+C ++ S L HL+ +E P +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGE 68
Y C C ++F ++L HLRVHT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
Y+C C + + K L H +VHTGE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSG 42
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
YEC C ++F +L H RVHTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKP 70
Y+C C ++F ++L H R+HTG +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
KPY C+EC + F+R++ L H +
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRI 34
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCHREDARNPYA 103
EKP+ C C + + S L HL+ R D P +
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 769
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVR 79
YE C+R+ C++ L P +V K +ACN C R
Sbjct: 60 YEPVLCSRT-TCRAVLNPLCQVDYRAKLWACNFCYQR 95
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
Length = 765
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVR 79
YE C+R+ C++ L P +V K +ACN C R
Sbjct: 56 YEPVLCSRT-TCRAVLNPLCQVDYRAKLWACNFCYQR 91
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
pdb|3EGD|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 764
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVR 79
YE C+R+ C++ L P +V K +ACN C R
Sbjct: 56 YEPVLCSRT-TCRAVLNPLCQVDYRAKLWACNFCYQR 91
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 39 TGEMYECCHCARSFPCKSYLIPHLR-VHTGEKPYACNL 75
G+ Y C C + F +L H++ VHT E+P+ C +
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 11 AKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYEC 45
KPY C C + F+R L H H + ++C
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
+ C C +++ S L H R H G +P +C C + E+ HLK
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSK----LKIHYN 34
+ H H G +P +C EC + F S+ LK+H N
Sbjct: 20 LSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
Y+C C + + + L H RVHTGEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKP 70
Y+C C +SF L H HT EKP
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 12 KPYACTECDQKFNRNSKLKIHY 33
KPY C+EC + F+ + +L H+
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHW 32
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 69 KPYACNLCTVRYLRSYELVLHLKKCHREDARNP 101
KPY C+ C + SY L H RE P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 ECCHCARSFPCKSYLIPHLRVHTGEK 69
+C C + F L HLR+H+GEK
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
K + C ECD F++ S L++H N+
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNV 34
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCH 94
+KPYAC++C RY L H H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSH 31
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGEMYE 44
KPYAC C +++ L HY +H E E
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLAEEEGE 38
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++C C +SF +S L H VHT EKP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++C C + F S H R H+GEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSG 42
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
+PY+C+ C ++F+ +++ HY +
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRV 25
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTG 67
Y C C + F K + H RVHTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 14 YACTECDQKFNRNSKLKIHYNLAHCTGE 41
+AC EC ++F R+ L H L GE
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 68 EKPYACNL--CTVRYLRSYELVLHLK 91
EKP+AC C R+ RS EL H +
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRR 35
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 69 KPYACNLCTVRYLRSYELVLHLK 91
KPY C C R+++S +L H++
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIR 23
>pdb|2XHG|A Chain A, Crystal Structure Of The Epimerization Domain From The
Initiation Module Of Tyrocidine Biosynthesis
Length = 466
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
K Y T+C QK RN ++++H
Sbjct: 221 KDYEVTDCKQKSVRNMRIRLH 241
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KPY C +C + +NR L +H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMH 31
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
++C C ++F ++L H +H GE P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENPSG 42
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 39 TGEMYECCHCARSFPCKSYLIPHLRVHTGE 68
T + YEC C +F + +LI H + H +
Sbjct: 9 TRKRYECSKCQATFNLRKHLIQHQKTHAAK 38
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 19 CDQKFNRNSKLKIHYNLAHCTGEMYECCH--CARSFPCKSYLIPHLRVHTGEKPYACNL 75
C + F+ L H H + + C C +SF K +L H+++H+ + Y C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 48 CARSFPCKSYLIPHLRVHTGEK 69
C R+F + YL H R HT EK
Sbjct: 8 CTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 44 ECCHCARSFPCKSYLIPHLRVHTGE 68
EC C + F S LI H +H GE
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVH 65
Y+C C RSF KS L H RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,127,839
Number of Sequences: 62578
Number of extensions: 157596
Number of successful extensions: 1028
Number of sequences better than 100.0: 193
Number of HSP's better than 100.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 521
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)