RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12639
(134 letters)
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 35.8 bits (82), Expect = 0.003
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Query: 10 GAKPYAC--TECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTG 67
KPY C C++K+ + LK H H +++E
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHE----------NPSPEKMNIFSAK 395
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCH 94
+KPY C +C RY L H K H
Sbjct: 396 DKPYRCEVCDKRYKNLNGLKYHRKHSH 422
Score = 29.3 bits (65), Expect = 0.57
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 2 ESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAH 37
E + KPY C CD+++ + LK H +H
Sbjct: 387 EKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHSH 422
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 28.1 bits (63), Expect = 0.19
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNR 25
+ H+ HTG KPY C C + F+
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.7 bits (62), Expect = 0.26
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 61 HLRVHTGEKPYACNLCTVRYLR 82
H+R HTGEKPY C +C +
Sbjct: 5 HMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 30.8 bits (69), Expect = 0.20
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 48 CARSFPCKSYLIPHLRVHTGEKPYACNL--CTVRYLRSYELVLHL 90
C SF +L H+R HTGEKP C+ C + R EL HL
Sbjct: 39 CTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHL 83
Score = 30.8 bits (69), Expect = 0.21
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGE---MYECCH--CARSFPCKSYLIPHLRVHT 66
P +C+ F+R+S L H + +GE + C + C + F L H+ +HT
Sbjct: 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT 347
Query: 67 GEKPYACNLCT 77
P L
Sbjct: 348 SISPAKEKLLN 358
Score = 28.9 bits (64), Expect = 0.75
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 3 SHLMLHTGAKPYACT--ECDQKFNRNSKLKIHYNLAH 37
H+ HTG KP C+ CD+ F+R +L H H
Sbjct: 51 RHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHH 87
>gnl|CDD|233157 TIGR00863, P2X, cation transporter protein. ATP-gated Cation
Channel (ACC) Family (TC 1.A.7)Members of the ACC family
(also called P2X receptors) respond to ATP, a functional
neurotransmitter released by exocytosis from many types
of neurons.These channels, which function at
neuron-neuron and neuron-smooth muscle junctions, may
play roles in the control of blood pressure and pain
sensation. They may also function in lymphocyte and
plateletphysiology. They are found only in animals.ACC
channels are probably hetero- or homomultimers and
transport small monovalent cations (Me+). Some also
transport Ca2+; a few also transport small metabolites
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 372
Score = 27.8 bits (62), Expect = 2.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 89 HLKKCHREDARNPYAPAFVDVNTVAQVKQEYEELPVK 125
+LK C + +PY P F + V + Q++++L +K
Sbjct: 215 YLKTCLFDPDSDPYCPIFRLGDIVEEAGQDFQDLALK 251
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 27.8 bits (62), Expect = 2.2
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 14 YACTECDQKFNRNSKLKIHYNLAHCTG 40
Y C C +F+ +L H H G
Sbjct: 74 YVCNVCMAEFSSMDQLAEHQRTTHSIG 100
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23
[Intracellular trafficking and secretion].
Length = 755
Score = 26.8 bits (59), Expect = 4.3
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 33 YNLAHCTGEM----YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVR 79
Y H + YE C + PCK+ L P+ + + + C C R
Sbjct: 37 YTPLHEDDALTVNYYEPVKC--TAPCKAVLNPYCHIDERNQSWICPFCNQR 85
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 26.9 bits (59), Expect = 4.3
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 14/102 (13%)
Query: 19 CDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPC------KSYLIPHLRVHTGEKPYA 72
C ++ +LK HY H EC + F S L H E+ +
Sbjct: 159 CHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFK 218
Query: 73 ----CNLCTVRYLRSYELVLHLK----KCHREDARNPYAPAF 106
C C + + EL H + CH D P +
Sbjct: 219 GHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQY 260
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 24.0 bits (52), Expect = 6.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 43 YECCHCARSFPCKSYLIPHLRVH 65
Y C C + F KS L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|220661 pfam10263, SprT-like, SprT-like family. This family represents a
domain found in eukaryotes and prokaryotes. The domain
contains a characteristic motif of the zinc
metallopeptidases. This family includes the bacterial
SprT protein.
Length = 153
Score = 25.4 bits (56), Expect = 7.9
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 9/39 (23%)
Query: 14 YACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSF 52
Y C C Q + R +++ H Y C C
Sbjct: 120 YRCGSCGQLYPRKRRIRRH---------KYRCGRCGGKL 149
>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger. COPII-coated
vesicles carry proteins from the endoplasmic reticulum
to the Golgi complex. This vesicular transport can be
reconstituted by using three cytosolic components
containing five proteins: the small GTPase Sar1p, the
Sec23p/24p complex, and the Sec13p/Sec31p complex. This
domain is found to be zinc binding domain.
Length = 39
Score = 23.7 bits (52), Expect = 8.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 54 CKSYLIPHLRVHTGEKPYACNLCTVR 79
C++YL P+ + G + + CNLC R
Sbjct: 7 CRAYLNPYCQFDFGGRRWTCNLCGQR 32
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 23.5 bits (51), Expect = 9.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 16 CTECDQKFNRNSKLKIHYN 34
C +C + F+R S LK H
Sbjct: 2 CPDCGKSFSRKSNLKRHLR 20
>gnl|CDD|215403 PLN02757, PLN02757, sirohydrochlorine ferrochelatase.
Length = 154
Score = 25.5 bits (56), Expect = 9.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 30 KIHYNLAHCTGEMYECCHCARSFPCKSY 57
+I Y L+H G+ EC CA + C+ Y
Sbjct: 127 RIKYCLSHVAGDADECDVCAGTGKCRLY 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.444
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,387,624
Number of extensions: 517954
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 38
Length of query: 134
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 48
Effective length of database: 7,123,158
Effective search space: 341911584
Effective search space used: 341911584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (24.6 bits)