RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12639
(134 letters)
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 90.6 bits (226), Expect = 9e-25
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIH--YNLAHCTGEM-YECCHCARSFPCKSYLIP 60
H HTG KP+ C +C + + R L H N + E + C C +F + L
Sbjct: 26 HNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN-RSEQVFTCSVCQETFRRRMELRL 84
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCH 94
H+ HTGE PY C+ C+ ++++ +L H+ K H
Sbjct: 85 HMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 81.8 bits (203), Expect = 3e-21
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHLR--- 63
+G+ C C +KF LK+H H TGE +EC C + + K L+ H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRK-H-TGEKPFECPKCGKCYFRKENLLEHEARNC 59
Query: 64 VHTGEKPYACNLCTVRYLRSYELVLH 89
++ E+ + C++C + R EL LH
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLH 85
Score = 71.4 bits (176), Expect = 3e-17
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPH-LRVH 65
+ + + C+ C + F R +L++H H TGEM Y+C C++ F K L H +++H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVS-H-TGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Query: 66 TGEK 69
+G
Sbjct: 119 SGPS 122
Score = 60.2 bits (147), Expect = 6e-13
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 36 AHCTGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+G EC C + F K YL H R HTGEKP+ C C Y R L+ H
Sbjct: 1 GS-SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 86.3 bits (215), Expect = 2e-23
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHLRVHT 66
+ P+ C C + F+R KLK H H TG Y+C C + S L HLR+H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC-H-TGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 67 GEKPYACNLCTVRYLRSYELVLH 89
E+P+ C +C S +L +H
Sbjct: 61 DERPFKCQICPYASRNSSQLTVH 83
Score = 79.8 bits (198), Expect = 6e-21
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPH 61
+H+ HTG KPY C CD +S L H + H + E ++C C + S L H
Sbjct: 26 THMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-H-SDERPFKCQICPYASRNSSQLTVH 83
Query: 62 LRVHTGEKPYAC 73
LR HTG+ +
Sbjct: 84 LRSHTGDSGPSS 95
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 89.0 bits (222), Expect = 2e-23
Identities = 35/75 (46%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPH 61
+ L G KPYAC EC + F+R+ L H H TGE Y+C C +SF K L H
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRT-H-TGEKPYKCPECGKSFSDKKDLTRH 68
Query: 62 LRVHTGEKPYACNLC 76
R HTGEKPY C C
Sbjct: 69 QRTHTGEKPYKCPEC 83
Score = 87.9 bits (219), Expect = 5e-23
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPH 61
+H HTG KPYAC EC + F++ + L+ H H TGE Y+C C +SF + L H
Sbjct: 95 AHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-H-TGEKPYKCPECGKSFSREDNLHTH 152
Query: 62 LRVHTGEKPYACNLC 76
R HTGEKPY C C
Sbjct: 153 QRTHTGEKPYKCPEC 167
Score = 87.5 bits (218), Expect = 8e-23
Identities = 37/88 (42%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPH 61
H HTG KPY C EC + F+ L H H TGE Y+C C +SF ++ L H
Sbjct: 39 EHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-H-TGEKPYKCPECGKSFSQRANLRAH 96
Query: 62 LRVHTGEKPYACNLCTVRYLRSYELVLH 89
R HTGEKPYAC C + + L H
Sbjct: 97 QRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 75.2 bits (186), Expect = 3e-18
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 3 SHLMLH----TGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSY 57
+HL H TG KPY C EC + F+R L H H TGE Y+C C +SF +
Sbjct: 119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT-H-TGEKPYKCPECGKSFSRRDA 176
Query: 58 LIPHLRVHTGEKP 70
L H R HTG+K
Sbjct: 177 LNVHQRTHTGKKT 189
Score = 45.9 bits (110), Expect = 4e-07
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 51 SFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
S S + + GEKPYAC C + RS L H
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 85.3 bits (212), Expect = 4e-23
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-----YECCHCARSFPCKSY 57
S HTG KPYAC+ CD+ F + L +H+ + + C C ++F ++
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR-Y-HDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 58 LIPHLRVHTGEKPYACNLC 76
+ H G
Sbjct: 63 MARHADNCAGPDGVEGENS 81
Score = 45.2 bits (108), Expect = 2e-07
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 3 SHLMLHTG----AKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSF 52
H + + C++C + F R + + H + C G E + S
Sbjct: 33 MHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN--CAGPDGVEGENSGPSS 85
Score = 39.8 bits (94), Expect = 1e-05
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 58 LIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARN-PY 102
R HTGEKPYAC+ C + + L +H K+ H + +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAF 48
Score = 30.2 bits (69), Expect = 0.054
Identities = 3/23 (13%), Positives = 3/23 (13%)
Query: 1 MESHLMLHTGAKPYACTECDQKF 23
M H G
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 84.8 bits (211), Expect = 1e-22
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHL 62
+ K + C C + F ++ L IH H T E Y C C ++F + +L H
Sbjct: 8 GRLPSKTKKEFICKFCGRHFTKSYNLLIHERT-H-TDERPYTCDICHKAFRRQDHLRDHR 65
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLH 89
+H+ EKP+ C C + +S L +H
Sbjct: 66 YIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 82.5 bits (205), Expect = 8e-22
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHL 62
H HT +PY C C + F R L+ H + H + E ++C C + F L H
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDHRYI-H-SKEKPFKCQECGKGFCQSRTLAVHK 93
Query: 63 RVHTGEKPYACN 74
+H
Sbjct: 94 TLHMQTSSPTAA 105
Score = 42.8 bits (102), Expect = 2e-06
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 55 KSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
S +K + C C + +SY L++H
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH 36
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 83.7 bits (208), Expect = 2e-22
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHLRVHT 66
+G+ AC C + F L H H +GE Y C C F K + H+R H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS-H-SGEKPYSCPVCGLRFKRKDRMSYHVRSHD 59
Query: 67 GE--KPYACNLCTVRYLRSYELVLHLKKCH 94
G KPY C C + R L H+K+ H
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 71.0 bits (175), Expect = 2e-17
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM---YECCHCARSFPCKSYLIP 60
H + H+G KPY+C C +F R ++ H H G + Y C C + F +L
Sbjct: 26 HKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-H-DGSVGKPYICQSCGKGFSRPDHLNG 83
Query: 61 HL-RVHTGEK 69
H+ +VH+G
Sbjct: 84 HIKQVHSGPS 93
Score = 58.3 bits (142), Expect = 2e-12
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 36 AHCTGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+G C C + F +L H H+GEKPY+C +C +R+ R + H
Sbjct: 1 GS-SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 81.7 bits (203), Expect = 2e-21
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHL 62
H+ +H G +PY C C +KF L H + H TG YEC CA+ F + H
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-H-TGIKPYECNICAKRFMWRDSF--HR 83
Query: 63 RVHTGEKPYACNLC 76
V + K Y
Sbjct: 84 HVTSCTKSYEAAKA 97
Score = 79.8 bits (198), Expect = 1e-20
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHLRVHT 66
+G K Y C +C + F S+ H ++ H G Y C C + F K +L+ H+++HT
Sbjct: 5 SSGDKLYPC-QCGKSFTHKSQRDRHMSM-H-LGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 67 GEKPYACNLC 76
G KPY CN+C
Sbjct: 62 GIKPYECNIC 71
Score = 49.7 bits (120), Expect = 4e-09
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKL--KIHYNLAHCTGEM-YECCHCARSFPCKSYL 58
H+ +HTG KPY C C ++F + + YE ++ S
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRDSFHRHVT------SCTKSYEAAKAEQNTTEASGP 107
Score = 29.3 bits (67), Expect = 0.15
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 63 RVHTGEKPYAC 73
+G+K Y C
Sbjct: 3 SGSSGDKLYPC 13
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 80.7 bits (200), Expect = 2e-21
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 8 HTGAKPYACT--ECDQKFNRNSKLKIHYNLAHCTGEM-YEC--CHCARSFPCKSYLIPHL 62
+G+ C C + F+ L H H + + C C +SF K +L H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH-IHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 63 RVHTGEKPYACNLC 76
++H+ + Y C
Sbjct: 61 KLHSDTRDYICEFS 74
Score = 31.4 bits (72), Expect = 0.017
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 4 HLMLHTGAKPYACTECDQKF 23
H+ LH+ + Y C
Sbjct: 59 HMKLHSDTRDYICEFSGPSS 78
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 79.1 bits (196), Expect = 6e-21
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM---YECCHCARSFPCKSYLI 59
S H+G KPY C C +F ++ +K+H L E + C HC KS L
Sbjct: 5 SSGRTHSGEKPYECYICHARFTQSGTMKMHI-LQK-HTENVAKFHCPHCDTVIARKSDLG 62
Query: 60 PHLR-VHTGEKPYA 72
HLR H+ P +
Sbjct: 63 VHLRKQHSYSGPSS 76
Score = 41.0 bits (97), Expect = 5e-06
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 58 LIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARNPY 102
R H+GEKPY C +C R+ +S + +H+ + H E+ +
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA-KF 46
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 80.3 bits (199), Expect = 7e-21
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 3 SHLMLHTGAKPYACT--ECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLI 59
H HTG KPY C +C+++F+R+ +LK H H TG ++C C R F +L
Sbjct: 26 MHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-H-TGVKPFQCKTCQRKFSRSDHLK 83
Query: 60 PHLRVHTGEKPYACNL--CTVRYLRSYELVLH 89
H R HTGEKP++C C ++ RS ELV H
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 70.6 bits (174), Expect = 4e-17
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 9 TGAKPYACTE--CDQKFNRNSKLKIHYNLAHCTGEM-YEC--CHCARSFPCKSYLIPHLR 63
+ +P+ C C++++ + S L++H H TGE Y+C C R F L H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR-KH-TGEKPYQCDFKDCERRFSRSDQLKRHQR 59
Query: 64 VHTGEKPYACNLCTVRYLRSYELVLH 89
HTG KP+ C C ++ RS L H
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTH 85
Score = 59.8 bits (146), Expect = 7e-13
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YEC--CHCARSFPCKSYLI 59
H HTG KP+ C C +KF+R+ LK H H TGE + C C + F L+
Sbjct: 56 RHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-H-TGEKPFSCRWPSCQKKFARSDELV 113
Query: 60 PHLRVH 65
H +H
Sbjct: 114 RHHNMH 119
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 78.7 bits (195), Expect = 1e-20
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHL 62
+H+G KPY C EC + F+R+S L H + H TGE Y+C C ++F S LI H
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRV-H-TGEKPYKCLECGKAFSQNSGLINHQ 62
Query: 63 RVHTGEKPYA 72
R+HT
Sbjct: 63 RIHTSGPSSG 72
Score = 57.1 bits (139), Expect = 3e-12
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 30 KIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVL 88
IH +GE Y C C ++F S L+ H RVHTGEKPY C C + ++ L+
Sbjct: 7 GIH------SGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 89 H 89
H
Sbjct: 61 H 61
Score = 39.8 bits (94), Expect = 1e-05
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 58 LIPHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+H+GEKPY C C + RS LV H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 77.9 bits (193), Expect = 2e-20
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHL 62
+ Y C EC + F+ +S L H H TGE Y+C C ++F +S+LI H
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-H-TGEKPYKCDECGKAFIQRSHLIGHH 66
Query: 63 RVHTGEKPY 71
RVHTG P
Sbjct: 67 RVHTGSGPS 75
Score = 56.3 bits (137), Expect = 5e-12
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
Y+C C +SF S L H R HTGEKPY C+ C +++ L+ H
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 76.7 bits (190), Expect = 5e-20
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 1 MESHLM----LHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCK 55
M H + KPY C C F L H + H TGE Y C C F
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV-H-TGEKPYRCNICGAQFNRP 58
Query: 56 SYLIPHLRVHTGEKPY 71
+ L H R+H+GEKPY
Sbjct: 59 ANLKTHTRIHSGEKPY 74
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 77.3 bits (191), Expect = 2e-19
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAH--------CTGEMYECCHCARSFPC 54
S + CD+ F+ +L H + H EC +SF
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 55 KSYLIPHLRVHTGEKPYACNL--CTVRYLRSYELVLHL 90
K L+ H+RVHTGEKP+ C C + RS L +H
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 73.5 bits (181), Expect = 7e-18
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 4 HLMLHTGAKPYACT--ECDQKFNRNSKLKIHYNLAHCTGEM-YECCH--CARSFPCKSYL 58
H+ +HTG KP+ C C + F R+ LKIH H TGE ++C C R F S
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-H-TGEKPFKCEFEGCDRRFANSSDR 138
Query: 59 IPHLRVHTGEKPYACN 74
H+ VHT +K +
Sbjct: 139 KKHMHVHTSDKSGPSS 154
Score = 42.3 bits (100), Expect = 5e-06
Identities = 7/49 (14%), Positives = 13/49 (26%)
Query: 48 CARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHRE 96
S + + + C + +ELV H+ H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG 51
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 75.2 bits (186), Expect = 3e-19
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 12 KPYAC--TECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHLRVHTGE 68
+PYAC CD++F+++ L H + H TG+ ++C C R+F +L H+R HTGE
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-H-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 69 KPYACNLCTVRYLRSYELVLHLK 91
KP+AC++C ++ RS E H K
Sbjct: 61 KPFACDICGRKFARSDERKRHTK 83
Score = 73.3 bits (181), Expect = 2e-18
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPH 61
H+ +HTG KP+ C C + F+R+ L H H TGE + C C R F H
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-H-TGEKPFACDICGRKFARSDERKRH 81
Query: 62 LRVHTGEK 69
++H +K
Sbjct: 82 TKIHLRQK 89
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 74.1 bits (183), Expect = 9e-19
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCH--CARSFPCKSYLIPHLRV 64
T C + + ++S LK H H TGE Y C C F L H R
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRT-H-TGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 65 HTGEKPYACNLCTVRYLRSYELVLHLK 91
HTG +P+ C C + RS L LH+K
Sbjct: 60 HTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 54.8 bits (133), Expect = 3e-11
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 3 SHLMLHTGAKPYACT--ECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLI 59
+HL HTG KPY C C KF R+ +L HY H TG ++C C R+F +L
Sbjct: 25 AHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-H-TGHRPFQCQKCDRAFSRSDHLA 82
Query: 60 PHLRVH 65
H++ H
Sbjct: 83 LHMKRH 88
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 74.5 bits (184), Expect = 1e-18
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCH--CARSFPCKSY 57
M HL H G + + C EC + F +SKLK H L H TGE ++C C + F
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVH-TGEKPFQCTFEGCGKRFSLDFN 79
Query: 58 LIPHLRVHTGEKPYAC 73
L H+R+HTG++PY C
Sbjct: 80 LRTHVRIHTGDRPYVC 95
Score = 69.1 bits (170), Expect = 2e-16
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 3 SHLMLHTGAKPYACT--ECDQKFNRNSKLKIHYNLAHCTGEM-YECCH--CARSFPCKSY 57
H ++HTG KP+ CT C ++F+ + L+ H + H TG+ Y C C + F +
Sbjct: 52 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-H-TGDRPYVCPFDGCNKKFAQSTN 109
Query: 58 LIPHLRVHTGEKPY 71
L H+ H K
Sbjct: 110 LKSHILTHAKAKNN 123
Score = 67.5 bits (166), Expect = 9e-16
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 12 KPYACT--ECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHLRVHTGE 68
+ AC C + F NS ++ H + H G + C C ++F S L H VHTGE
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT-H--GPRVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 69 KPYACNL--CTVRYLRSYELVLH 89
KP+ C C R+ + L H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTH 83
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 75.7 bits (187), Expect = 3e-18
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 4 HLMLHTGAKPYACTE--CDQKFNRNSKLKIHYNLAHCTGEM---YECC--HCARSFPCKS 56
H + HTG K + C CD +F + +K H+N Y C +C ++F +
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-F-HNIKICVYVCHFENCGKAFKKHN 120
Query: 57 YLIPHLRVHTGEKPYACN 74
L H HT + PY C
Sbjct: 121 QLKVHQFSHTQQLPYECP 138
Score = 74.2 bits (183), Expect = 9e-18
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 4 HLMLHTGAKPYAC--TECDQKFNRNSKLKIHYNLAHCTGEM-YEC--CHCARSFPCKSYL 58
L K Y C +C +N+N KL+ H H TGE + C C + F +L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-H-TGEKPFPCKEEGCEKGFTSLHHL 60
Query: 59 IPHLRVHTGEKPYACN 74
H HTGEK + C+
Sbjct: 61 TRHSLTHTGEKNFTCD 76
Score = 67.6 bits (166), Expect = 3e-15
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 4 HLMLHTGAK--PYACT--ECDQKFNRNSKLKIHYNLAHCTGEM-YECCH--CARSFPCKS 56
H K Y C C + F ++++LK+H H T ++ YEC H C + F S
Sbjct: 93 HFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS-H-TQQLPYECPHEGCDKRFSLPS 150
Query: 57 YLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHRE 96
L H +VH G + C+ + H+ +CH++
Sbjct: 151 RLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 34.1 bits (79), Expect = 0.006
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 59 IPHLRVHTGEKPYACN 74
+ + K Y C+
Sbjct: 1 MGEKALPVVYKRYICS 16
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 71.4 bits (176), Expect = 7e-18
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHLRVHT 66
+ P C+EC + + L+IH + H + ++C +C+ S L H++
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERI-H-CTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 67 GEKPYAC 73
G+
Sbjct: 62 GDMSGPS 68
Score = 35.2 bits (82), Expect = 6e-04
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLH 89
+ P C+ C+ L +H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH 28
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 70.5 bits (174), Expect = 2e-17
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 14 YACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
+ C C + F R+S L H L H + Y C +C + F KS + H +HTGEKP+
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIH-SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 73 CNLCTVRYLRSYELVLH 89
C +C + +S L+ H
Sbjct: 60 CQVCGKAFSQSSNLITH 76
Score = 65.5 bits (161), Expect = 1e-15
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHL 62
HL++H+ +PY C C ++F++ S +K H + H TGE ++C C ++F S LI H
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-H-TGEKPHKCQVCGKAFSQSSNLITHS 77
Query: 63 RVHTG 67
R HTG
Sbjct: 78 RKHTG 82
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 70.2 bits (173), Expect = 3e-17
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHLRVHTGEKP 70
KP+ C C + F+R+ L H H TGE + C C R F H + P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-H-TGEKPFACDICGRKFARSDERKRHRDIQH-ILP 58
Query: 71 YACNLCTVRYLRSYELVLH 89
+ ++Y L
Sbjct: 59 ILEDKVEELLSKNYHLENE 77
Score = 66.8 bits (164), Expect = 6e-16
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYL---I 59
+H+ HTG KP+AC C +KF R+ + K H ++ +L +
Sbjct: 21 THIRTHTGEKPFACDICGRKFARSDERKRHRDI-Q-HILPILEDKVEELLSKNYHLENEV 78
Query: 60 PHLRVHTGEK 69
L+ GE+
Sbjct: 79 ARLKKLVGER 88
Score = 56.0 bits (136), Expect = 9e-12
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHRE 96
++C C R+F +L H+R HTGEKP+AC++C ++ RS E H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-RDIQHI 56
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 70.3 bits (173), Expect = 1e-16
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHC-TGE-MYECCHC-----ARSFPCKSYLIPHLRV 64
C Q+F+ +L H N H + C R F + L+ H+R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 65 HTGEKPYACNL--CTVRYLRSYELVLH 89
HTGEKP+ C C Y R L H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTH 88
Score = 69.5 bits (171), Expect = 3e-16
Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 3 SHLMLHTGAKPYACT--ECDQKFNRNSKLKIHYNLAHCTGEM-YEC--CHCARSFPCKSY 57
H+ HTG KP+ CT C + ++R LK H +H TGE Y C C+++F S
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR-SH-TGEKPYMCEHEGCSKAFSNASD 114
Query: 58 LIPH-LRVHTGEKPYACNL--CTVRYLRSYELVLHLK 91
H R H+ EKPY C L CT RY L H+K
Sbjct: 115 RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 68.8 bits (169), Expect = 6e-16
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 8 HTGAKPYACTECDQK-----FNRNSKLKIHYNLAHCTGEM-YECCH--CARSFPCKSYLI 59
H K + C F L +H H TGE ++C C +S+ L
Sbjct: 29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-H-TGEKPHKCTFEGCRKSYSRLENLK 86
Query: 60 PHLRVHTGEKPYACN--LCTVRYLRSYELVLHLKKCH 94
HLR HTGEKPY C C+ + + + H + H
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 57.2 bits (139), Expect = 1e-11
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 3 SHLMLHTGAKPYACTE--CDQKFNRNSKLKIHYNLAHCTGEM-YEC--CHCARSFPCKSY 57
+HL HTG KPY C C + F+ S H N H + E Y C C + + S
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH-SNEKPYVCKLPGCTKRYTDPSS 145
Query: 58 LIPHLRVHTG 67
L H++ G
Sbjct: 146 LRKHVKTVHG 155
Score = 27.9 bits (63), Expect = 0.82
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCHREDARNPY 102
E + C+ + +LV H+ H R +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEF 35
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 65.7 bits (161), Expect = 1e-15
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGE-MYECCHCARSFPCKSYLIPHLRVHT 66
G Y C C + + S HY +H +Y C C + F K + H+++
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 67 G 67
Sbjct: 65 K 65
Score = 35.6 bits (83), Expect = 4e-04
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARNPY 102
GE Y C +C+ Y H H+ + + Y
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVK-VY 41
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 65.3 bits (160), Expect = 3e-15
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 2 ESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCH--CARSFPCKSYL 58
+H P C + + ++S LK H H TGE Y+C C F L
Sbjct: 10 LEKRRIHYCDYPG----CTKVYTKSSHLKAHLRT-H-TGEKPYKCTWEGCDWRFARSDEL 63
Query: 59 IPHLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
H R HTG KP+ C +C + RS L LH+K
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 55.3 bits (134), Expect = 2e-11
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 3 SHLMLHTGAKPYACT--ECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLI 59
+HL HTG KPY CT CD +F R+ +L HY H TG ++C C RSF +L
Sbjct: 35 AHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KH-TGAKPFQCGVCNRSFSRSDHLA 92
Query: 60 PHLRVHT 66
H++ H
Sbjct: 93 LHMKRHQ 99
Score = 27.6 bits (62), Expect = 0.67
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 51 SFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHL 90
S + R+H + P CT Y +S L HL
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHL 37
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 60.4 bits (146), Expect = 3e-13
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 7 LHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMY--------ECCHCARSFPCKSYL 58
+ CD+ F+ +L H + H G EC +SF K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 59 IPHLRVHTGEKPYAC 73
+ H+RVHTGEK
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 29.6 bits (66), Expect = 0.11
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 64 VHTGEKPYACNLCTVRYLRSYELVLHLKKCH 94
+ + C + +ELV H+ H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 25.3 bits (55), Expect = 4.3
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 1 MESHLMLHTGAKPYACT 17
+ +H+ +HTG K +
Sbjct: 78 LVNHIRVHTGEKSGPSS 94
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 59.0 bits (144), Expect = 4e-13
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGEM-YECCHCARSFPCKSYLIPHL-RVHTGEK 69
+ + C C + F R LK HY H T E Y C C R+F + LI H ++H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-H-TNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 57.9 bits (141), Expect = 8e-13
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCH 94
+ C C R+F + +L H R HT EKPY C LC + R L+ H +K H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 44.8 bits (107), Expect = 1e-07
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 3 SHLM----LHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYE 44
HL HT KPY C C++ F R L H H +G + E
Sbjct: 16 EHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH-SGNLGE 60
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 58.6 bits (142), Expect = 9e-13
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHYNL-AHCTGEM-YECCHCARSFPCKSYLIPHLRVH 65
+G+ C C + + L H A + + C C + F + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 66 TGEKPYACN 74
A
Sbjct: 62 HPALLLAPQ 70
Score = 55.9 bits (135), Expect = 1e-11
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHT---GEKPYACNLCTVRYLRSYELVLHLKKCH 94
+G +C C + K+ L H R H + C C R+ + + H K H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 95 REDARNP 101
P
Sbjct: 63 PALLLAP 69
Score = 39.7 bits (93), Expect = 1e-05
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 1 MESHLMLHT---GAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSF 52
+ H H A + C C ++F + + H + +H + S
Sbjct: 23 LNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
Score = 30.8 bits (70), Expect = 0.030
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 65 HTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARNPYA 103
+G C +C + L H +K A +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFP 40
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 57.2 bits (139), Expect = 1e-12
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
+GE + C C ++F KSYL+ H + H EKP +
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 32.5 bits (75), Expect = 0.003
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKP+ C+ C + L++H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 23.6 bits (52), Expect = 6.7
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 3 SHLMLH----TGAKPYACT 17
S+L++H KP +
Sbjct: 24 SYLLVHQQTHAEEKPSGPS 42
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 59.4 bits (143), Expect = 1e-12
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYN----LAHCTGEMYECCHCARSFPCKSYLI 59
+ + TGA + C +C ++ +L +H N E S P K L+
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 60 PHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCH 94
+K C C + +L +H+ K
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 33.2 bits (75), Expect = 0.007
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 56 SYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
S + + TG + C C+ Y EL +H+
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN 40
Score = 29.7 bits (66), Expect = 0.13
Identities = 6/32 (18%), Positives = 8/32 (25%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIH 32
+ K C C F L +H
Sbjct: 68 LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 56.8 bits (138), Expect = 2e-12
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TG Y C CA++F KS LI H R HTG KP +
Sbjct: 8 TGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TG KPY C+ C + +L++H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 24.0 bits (53), Expect = 5.4
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 3 SHLMLH----TGAKPYACT 17
S L++H TG KP +
Sbjct: 26 SQLIVHQRSHTGVKPSGPS 44
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 57.6 bits (140), Expect = 2e-12
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 14 YACT--ECDQKFNRNSKLKIHYNLAHCTGEM-YECCH--CARSFPCKSYLIPHLRVHTGE 68
Y C C + F ++++LK+H H T ++ YEC H C + F S L H +VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFS-H-TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Query: 69 KPYACNLCTVRYLRSYELVLHLKKCH 94
+ C+ + H+ +CH
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 31.8 bits (73), Expect = 0.014
Identities = 6/34 (17%), Positives = 8/34 (23%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAH 37
H +H G C + H H
Sbjct: 52 HEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 3e-12
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE YEC C +SF KS L H ++HTGEKP +
Sbjct: 8 TGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C++C + + +L +H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 3e-12
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TG+ YEC C ++F KS LI H R HTGEKP +
Sbjct: 8 TGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 8e-05
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TG++PY C C + L+ H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 25.6 bits (57), Expect = 1.1
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 4 HLMLHTGAKPYACTE 18
H HTG KP +
Sbjct: 31 HRRSHTGEKPSGPSS 45
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 3e-12
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE +EC C +SF S LI H R+HTGE P +
Sbjct: 8 TGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKP+ C C + + +L++H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 56.0 bits (136), Expect = 4e-12
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TG+ +EC HC +SF K L+ H R+HTGEK +
Sbjct: 8 TGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TG+KP+ C C + LV H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 23.7 bits (52), Expect = 6.1
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 4 HLMLHTGAKPYACT 17
H +HTG K +
Sbjct: 31 HQRIHTGEKSGPSS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 5e-12
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C++C +SF KS L H
Sbjct: 2 SSGSSGTGEKPYKCSDCG-----------------------------KSFTWKSRLRIHQ 32
Query: 63 RVHTGEKPYACN 74
+ HTGE+ +
Sbjct: 33 KCHTGERHSGPS 44
Score = 35.2 bits (82), Expect = 4e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C+ C + L +H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 5e-12
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
GE Y C C ++F KSYLI H+R H+GEKP
Sbjct: 8 AGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
GEKPY C+ C + L++H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 24.4 bits (54), Expect = 3.7
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 3 SHLMLH----TGAKPYACT 17
S+L++H +G KP +
Sbjct: 26 SYLIIHMRTHSGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 6e-12
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
TGE +EC C ++F KS LI H R HTGEKP
Sbjct: 8 TGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKP+ C+ C + L++H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 24.0 bits (53), Expect = 4.3
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 3 SHLMLH----TGAKPYACT 17
S+L++H TG KP +
Sbjct: 26 SNLIVHQRTHTGEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 6e-12
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE Y+C C ++F +S L H H+GEKP +
Sbjct: 8 TGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 35.6 bits (83), Expect = 2e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY CN C + L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 23.7 bits (52), Expect = 5.9
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 4 HLMLHTGAKPYACT 17
H H+G KP +
Sbjct: 31 HQATHSGEKPSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 55.3 bits (134), Expect = 6e-12
Identities = 18/72 (25%), Positives = 21/72 (29%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KP CTEC + F KS LI H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCW-----------------------------KSQLIMHQ 32
Query: 63 RVHTGEKPYACN 74
R H +K +
Sbjct: 33 RTHVDDKHSGPS 44
Score = 34.8 bits (81), Expect = 6e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKP C C + +L++H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 6e-12
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE YEC C ++F KS L H R+H GEKP +
Sbjct: 8 TGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 36.0 bits (84), Expect = 2e-04
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGE+ Y C+ C +++ L +H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 7e-12
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE YEC C ++F KS LI H R+HTGEKP +
Sbjct: 8 TGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 3e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGE+ Y C+ C + R L++H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.9 bits (133), Expect = 1e-11
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE YEC C +SF KS L H R+HTGE P +
Sbjct: 8 TGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 36.8 bits (86), Expect = 9e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C+ C +++ +L +H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 1e-11
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE YEC C ++F K LI H R H GEKP +
Sbjct: 8 TGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 38.3 bits (90), Expect = 2e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGE PY C+ C + R Y+L+ H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 1e-11
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S +G +P+ C EC + F R +S+L HL
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGR-----------------------------RSHLAGHL 32
Query: 63 RVHTGEKPYACN 74
R+H+ EK +
Sbjct: 33 RLHSREKSSGPS 44
Score = 35.2 bits (82), Expect = 3e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GE+P+ CN C + R L H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 1e-11
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE YEC C ++F + L H R+H+G+KP +
Sbjct: 8 TGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C++C + L +H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.9 bits (133), Expect = 1e-11
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F C+ L H
Sbjct: 2 SSGSSGTGEKPYKCEECG-----------------------------KGFICRRDLYTHH 32
Query: 63 RVHTGEKPYACN 74
VHTGEKP +
Sbjct: 33 MVHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C C ++ +L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 54.8 bits (133), Expect = 1e-11
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE YEC C ++F ++LI H RVHTGEKP +
Sbjct: 8 TGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 9e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C C + ++ L+ H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 1e-11
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG K + CTEC + F R KS L H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTR-----------------------------KSTLSMHQ 32
Query: 63 RVHTGEKPYACN 74
++HTGEKP +
Sbjct: 33 KIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TG K + C C + R L +H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 1e-11
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C++C + F R KS L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTR-----------------------------KSGLHIHQ 32
Query: 63 RVHTGEKPYACN 74
+ HTGE+ +
Sbjct: 33 QSHTGERHSGPS 44
Score = 37.1 bits (87), Expect = 7e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C+ C + R L +H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 1e-11
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE Y C C ++F +S LI H ++HTGEKP +
Sbjct: 8 TGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 1e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGE+PY C +C + L+ H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 54.5 bits (132), Expect = 1e-11
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S G PY C++C++ F+ K L+ H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSG-----------------------------KLRLLVHQ 32
Query: 63 RVHTGEKPYACN 74
R+HT EKP +
Sbjct: 33 RMHTREKPSGPS 44
Score = 34.1 bits (79), Expect = 0.001
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
G PY C+ C + L++H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 54.4 bits (132), Expect = 1e-11
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
TGE +EC C +SF S L H R+HTGEKP
Sbjct: 8 TGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKP+ C C + S +L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 1e-11
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
+GE Y C C ++F KS L H R HTGEKP +
Sbjct: 8 SGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKPY CN C + + L H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 26.0 bits (58), Expect = 0.91
Identities = 7/20 (35%), Positives = 8/20 (40%), Gaps = 4/20 (20%)
Query: 3 SHLMLH----TGAKPYACTE 18
S L H TG KP +
Sbjct: 26 SILSAHQRTHTGEKPSGPSS 45
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-11
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE + C C + F K+ LI H ++HTGE+P +
Sbjct: 8 TGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 37.1 bits (87), Expect = 8e-05
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGE P+ C+ C + L++H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 23.6 bits (52), Expect = 6.5
Identities = 5/19 (26%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 3 SHLMLH----TGAKPYACT 17
++L++H TG +P +
Sbjct: 26 TNLIIHQKIHTGERPSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 2e-11
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S +G KP+ C EC ++F +NS L H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNS-----------------------------QLHSHQ 32
Query: 63 RVHTGEKPYACN 74
RVHTGEKP +
Sbjct: 33 RVHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 8e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKP+ C C R+ ++ +L H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 54.5 bits (132), Expect = 2e-11
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S G K + C ECD F++ S L++H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQ----------------------------- 32
Query: 63 RVHTGEKPYACN 74
VH GEKP +
Sbjct: 33 NVHVGEKPSGPS 44
Score = 34.1 bits (79), Expect = 9e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
GEK + C C + + ++ L LH
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 2e-11
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG K Y C EC + F+R L+ H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSR-----------------------------APCLLKHE 32
Query: 63 RVHTGEKPYACN 74
R+H+GEKP +
Sbjct: 33 RLHSGEKPSGPS 44
Score = 39.0 bits (92), Expect = 1e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEK Y C C + R+ L+ H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
+GE Y C +C ++F + L+ H R+HTGEKP +
Sbjct: 8 SGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 6e-05
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKPY C+ C + S ELV H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S +G +PY C EC + F R S+LI HL
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGR-----------------------------HSHLIEHL 32
Query: 63 RVHTGEKPYACN 74
+ H EK +
Sbjct: 33 KRHFREKSSGPS 44
Score = 37.9 bits (89), Expect = 4e-05
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
+GE+PY CN C + R L+ HLK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 2e-11
Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S + KPY C +C + +NR + L H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNR-----------------------------RLNLDMHQ 32
Query: 63 RVHTGEKPYACN 74
RVH GEK +
Sbjct: 33 RVHMGEKTSGPS 44
Score = 37.9 bits (89), Expect = 4e-05
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+ EKPY C C Y R L +H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE YEC C ++F + L H RVH+GEKP +
Sbjct: 8 TGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 36.3 bits (85), Expect = 1e-04
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 61 HLRVHTGEKPYACNLC 76
TGEKPY C++C
Sbjct: 3 SGSSGTGEKPYECDVC 18
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE Y C C ++F +S LI H ++HT +KP +
Sbjct: 8 TGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 36.3 bits (85), Expect = 1e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C C + L+ H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE YEC C+++F K++L H + HTGEKP +
Sbjct: 8 TGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 2e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C +C+ + + L H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 26.0 bits (58), Expect = 1.0
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 4/20 (20%)
Query: 3 SHLM----LHTGAKPYACTE 18
+HL HTG KP +
Sbjct: 26 AHLAQHQKTHTGEKPSGPSS 45
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE YEC C ++F +S L H +HTG+KP +
Sbjct: 8 TGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 35.6 bits (83), Expect = 3e-04
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 61 HLRVHTGEKPYACNLC 76
TGEKPY CN C
Sbjct: 3 SGSSGTGEKPYECNQC 18
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 2e-11
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S +G KPY C+EC + F+R++ +L H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHT-----------------------------HLNEHR 32
Query: 63 RVHTGEKPYACN 74
R+HTG +P +
Sbjct: 33 RIHTGYRPSGPS 44
Score = 35.6 bits (83), Expect = 2e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKPY C+ C + R L H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C +C + +N K L H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNS-----------------------------KFNLDMHQ 32
Query: 63 RVHTGEKPYACN 74
+VHTGE+P +
Sbjct: 33 KVHTGERPSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C C Y + L +H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S +G KPY C EC + + R + L H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKR-----------------------------RLDLDFHQ 32
Query: 63 RVHTGEKPYACN 74
RVHTGEK +
Sbjct: 33 RVHTGEKLSGPS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKPY C C Y R +L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 2e-11
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S +G KP+ C EC ++F +NS +L H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNS-----------------------------HLHSHQ 32
Query: 63 RVHTGEKPYACN 74
RVHTGEKP +
Sbjct: 33 RVHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKP+ C C R+ ++ L H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG +P+ C EC + F +++ +LI H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSA-----------------------------HLIQHQ 32
Query: 63 RVHTGEKPYACN 74
R+HTGEKP +
Sbjct: 33 RIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGE+P+ CN C +++S L+ H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 53.6 bits (130), Expect = 3e-11
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
TG Y C C ++F KSYLI H R HTGE +
Sbjct: 8 TGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 36.3 bits (85), Expect = 1e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TG KPY CN C + L++H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S +G KPY C EC + F +NS +L H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNS-----------------------------HLTNHW 32
Query: 63 RVHTGEKPYACN 74
R+HTGEKP +
Sbjct: 33 RIHTGEKPSGPS 44
Score = 35.5 bits (83), Expect = 2e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKPY CN C + ++ L H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 25.9 bits (58), Expect = 1.1
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 4/20 (20%)
Query: 3 SHLM----LHTGAKPYACTE 18
SHL +HTG KP +
Sbjct: 26 SHLTNHWRIHTGEKPSGPSS 45
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S G K + C EC + F + S L H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQ-----------------------------SSSLTVHQ 32
Query: 63 RVHTGEKPYACN 74
R+HTGEKP +
Sbjct: 33 RIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 1e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
G+K + CN C + +S L +H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
+GE ++C C + F S H R H+GEKP +
Sbjct: 8 SGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 36.0 bits (84), Expect = 2e-04
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKP+ C C + + + H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 24.1 bits (53), Expect = 5.6
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 3 SHLMLHTGAKPYACT 17
SH H+G KP +
Sbjct: 30 SHQRSHSGEKPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.6 bits (130), Expect = 3e-11
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F RNS +L H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNS-----------------------------HLARHQ 32
Query: 63 RVHTGEKPYACN 74
+HTGEKP +
Sbjct: 33 LIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 1e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C+ C + R+ L H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F +NS +L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNS-----------------------------HLANHQ 32
Query: 63 RVHTGEKPYACN 74
R+HTG KP +
Sbjct: 33 RIHTGVKPSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY CN C + ++ L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 53.6 bits (130), Expect = 3e-11
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
TGE YEC C ++F KS L+ H R HTGE +
Sbjct: 8 TGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 37.1 bits (87), Expect = 7e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY CN C + L++H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S G KPY C+EC + F+ L H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSG-----------------------------SYRLTQHW 32
Query: 63 RVHTGEKPYACN 74
HT EKP +
Sbjct: 33 ITHTREKPSGPS 44
Score = 36.8 bits (86), Expect = 1e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
GEKPY C+ C + SY L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE Y C C +SF S L+ H RVH+GEKP +
Sbjct: 8 TGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 35.6 bits (83), Expect = 2e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C C + + L+ H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 25.6 bits (57), Expect = 1.4
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 4 HLMLHTGAKPYACTE 18
H +H+G KP +
Sbjct: 31 HQRVHSGEKPSGPSS 45
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 53.7 bits (130), Expect = 3e-11
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
+GE YEC C ++F K LI H R H GE +
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 32.5 bits (75), Expect = 0.004
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLH 89
+GE PY C+ C + R +L+ H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG K Y C EC + F+RNS L H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNS-----------------------------QLSQHQ 32
Query: 63 RVHTGEKPYACN 74
++HTGEKP +
Sbjct: 33 KIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 7e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEK Y CN C + R+ +L H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S G K Y C C ++F+++S +L H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSS-----------------------------HLQTHQ 32
Query: 63 RVHTGEKPYACN 74
RVHTGEKP +
Sbjct: 33 RVHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 6e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
GEK Y C++C + +S L H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F NS YL H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNS-----------------------------YLSRHQ 32
Query: 63 RVHTGEKPYACN 74
R+HTGEKP +
Sbjct: 33 RIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY CN C + + L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 24.8 bits (55), Expect = 2.4
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 4 HLMLHTGAKPYACTE 18
H +HTG KP +
Sbjct: 31 HQRIHTGEKPSGPSS 45
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.6 bits (130), Expect = 3e-11
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F +NS +L+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNS-----------------------------HLVRHR 32
Query: 63 RVHTGEKPYACN 74
+HTGEKP +
Sbjct: 33 GIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 2e-04
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY CN C + ++ LV H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE Y C C ++F S L H R+HTGEKP +
Sbjct: 8 TGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C C ++ +L H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-11
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C C + F +S +L+ H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSS-----------------------------HLVQHH 32
Query: 63 RVHTGEKPYACN 74
VH+GE+P +
Sbjct: 33 SVHSGERPSGPS 44
Score = 36.3 bits (85), Expect = 1e-04
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C +C + S LV H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-11
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F + K+ L H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQ-----------------------------KANLTQHQ 32
Query: 63 RVHTGEKPYACN 74
R+HTGEKP +
Sbjct: 33 RIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C C + + L H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-11
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KP+ C EC + +N+ + +L H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQ-----------------------------RVHLTQHQ 32
Query: 63 RVHTGEKPYACN 74
RVHTGEKP +
Sbjct: 33 RVHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 2e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKP+ C C Y + L H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-11
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F + KS+L H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQ-----------------------------KSHLNRHR 32
Query: 63 RVHTGEKPYACN 74
R+HTGEKP +
Sbjct: 33 RIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 1e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY CN C +++ L H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 26.3 bits (59), Expect = 0.72
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 4/20 (20%)
Query: 3 SHLM----LHTGAKPYACTE 18
SHL +HTG KP +
Sbjct: 26 SHLNRHRRIHTGEKPSGPSS 45
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.0 bits (128), Expect = 5e-11
Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F NS H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNS-----------------------------SCTQHQ 32
Query: 63 RVHTGEKPYACN 74
R+HTG++P +
Sbjct: 33 RLHTGQRPSGPS 44
Score = 36.0 bits (84), Expect = 2e-04
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C C + + H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 52.9 bits (128), Expect = 5e-11
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
+GE YEC C ++F KS LI H R H G +
Sbjct: 8 SGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKPY CN C ++ L++H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 6e-11
Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F S L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRA-----------------------------HSNLTTHQ 32
Query: 63 RVHTGEKPYACN 74
+HTGEKP +
Sbjct: 33 VIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 3e-04
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 61 HLRVHTGEKPYACNLC 76
TGEKPY CN C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 6e-11
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F +NS +L H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNS-----------------------------HLARHR 32
Query: 63 RVHTGEKPYACN 74
+HTGEKP +
Sbjct: 33 GIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 3e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TG+KPY CN C + ++ L H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 6e-11
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F +NS +L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNS-----------------------------HLARHR 32
Query: 63 RVHTGEKPYACN 74
+HTGEKP +
Sbjct: 33 GIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 2e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY CN C + ++ L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 6e-11
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S +G KP+ C EC + F +N +L HL
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNI-----------------------------HLASHL 32
Query: 63 RVHTGEKPYACN 74
R+HTGEKP +
Sbjct: 33 RIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 2e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKP+ C C + ++ L H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 7e-11
Identities = 17/72 (23%), Positives = 21/72 (29%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KP+ C C + F +S L H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCG-----------------------------RSRLNRHS 32
Query: 63 RVHTGEKPYACN 74
VHT EKP +
Sbjct: 33 MVHTAEKPSGPS 44
Score = 35.5 bits (83), Expect = 2e-04
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 61 HLRVHTGEKPYACNLC 76
TGEKP+ C++C
Sbjct: 3 SGSSGTGEKPFKCDIC 18
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 7e-11
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE Y+C C +SF S L H R+HTGEKP +
Sbjct: 8 TGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 9e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C++C + L +H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 25.2 bits (56), Expect = 1.8
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 4 HLMLHTGAKPYACTE 18
H +HTG KP +
Sbjct: 31 HQRIHTGEKPSGPSS 45
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 7e-11
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F++ S L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTS-----------------------------KLARHQ 32
Query: 63 RVHTGEKPYACN 74
R+HTGEKP +
Sbjct: 33 RIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 2e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY CN C + ++ +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 7e-11
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S G + + C++C + F + S I H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQ-----------------------------ASNFIQHR 32
Query: 63 RVHTGEKPYACN 74
R+HTGEKP +
Sbjct: 33 RIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 2e-04
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
GE+ + C+ C +L++ + H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 8e-11
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TG Y C C ++F S L H +HTGEKP +
Sbjct: 8 TGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 3e-04
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TG KPY CN C + L H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.5 bits (127), Expect = 8e-11
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
TGE YECC C + F K L+ H + H+G+ +
Sbjct: 8 TGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 34.4 bits (80), Expect = 6e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGE PY C C + R +LV H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 8e-11
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KPY C EC + F +NS +L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNS-----------------------------HLARHR 32
Query: 63 RVHTGEKPYACN 74
RVHTG KP +
Sbjct: 33 RVHTGGKPSGPS 44
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY CN C + ++ L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 53.5 bits (128), Expect = 8e-11
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLR 63
+H G + C++C F R S L + C C + ++ L
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAALNKDEG 60
Query: 64 VHTGEKPYA 72
+G+K
Sbjct: 61 NESGKKTSG 69
Score = 32.7 bits (74), Expect = 0.005
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 56 SYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
++H G++ C+ C + ++R L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 8e-11
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
+G+ YEC C ++F +L H RVHTGE+ +
Sbjct: 8 SGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 32.9 bits (76), Expect = 0.002
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+G+KPY C C +++ L H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 25.6 bits (57), Expect = 1.5
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 4 HLMLHTGAKPYACTE 18
H +HTG + +
Sbjct: 31 HKRVHTGERSSGPSS 45
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-10
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
TGE Y C C ++F +S L H ++HTGEKP
Sbjct: 8 TGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY C C + L H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 52.2 bits (126), Expect = 1e-10
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 28/74 (37%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S + KPY C C + F+R L H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIK---------------------------- 33
Query: 63 RVHTGEKPYACNLC 76
+VHT E+P+ C +
Sbjct: 34 QVHTSERPHKCQVW 47
Score = 34.5 bits (80), Expect = 7e-04
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCH 94
+ KPY C C + R L H+K+ H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 31.0 bits (71), Expect = 0.014
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 5/27 (18%)
Query: 3 SHLM-----LHTGAKPYACTECDQKFN 24
HL +HT +P+ C +
Sbjct: 26 DHLNGHIKQVHTSERPHKCQVWVSGPS 52
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 1e-10
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TG Y+C C ++F S L H RVHTGEKP +
Sbjct: 8 TGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TG KPY CN C + ++ +L H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 52.1 bits (126), Expect = 1e-10
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S TG KP+ C EC + F+R +S L H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSR-----------------------------RSALNVHH 32
Query: 63 RVHTGEKPYACN 74
++HTGEKP +
Sbjct: 33 KLHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 2e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKP+ C C + R L +H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-10
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE ++C C ++F L H R+HTGEKP +
Sbjct: 8 TGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 3e-04
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKP+ C C + L H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-10
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYACN 74
TGE Y C C ++F ++L HLRVHT E +
Sbjct: 8 TGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
TGEKPY+CN+C ++ S L H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.4 bits (124), Expect = 2e-10
Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 29/71 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S + K + C EC + F KS+L H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTL-----------------------------KSHLNQHQ 32
Query: 63 RVHTGEKPYAC 73
R+HTGEKP
Sbjct: 33 RIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 61 HLRVHTGEKPYACNLC 76
+ K + C+ C
Sbjct: 3 SGSSGSSTKSHQCHEC 18
Score = 23.3 bits (51), Expect = 9.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 4 HLMLHTGAKPYACT 17
H +HTG KP +
Sbjct: 31 HQRIHTGEKPSGPS 44
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 51.0 bits (123), Expect = 3e-10
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLR-VHTGEKPYACN 74
TG+ YEC C ++F + LI H R HTGEKP +
Sbjct: 8 TGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 38.3 bits (90), Expect = 2e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCH 94
TG+KPY C C ++++ L+ H + H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 23.3 bits (51), Expect = 8.2
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 8 HTGAKPYACT 17
HTG KP +
Sbjct: 36 HTGEKPSGPS 45
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 4e-10
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
TGE ++C C +F L HLR H P
Sbjct: 8 TGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 34.9 bits (81), Expect = 5e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
TGEKP+ C C + + S L HL+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR 33
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 50.3 bits (121), Expect = 7e-10
Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 29/72 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S +G K + C EC + F S L+IH
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQ----------------------------- 32
Query: 63 RVHTGEKPYACN 74
RVH GEK +
Sbjct: 33 RVHMGEKCSGPS 44
Score = 33.7 bits (78), Expect = 0.001
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEK + C+ C + L +H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 49.9 bits (120), Expect = 9e-10
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
+G+ YEC C +SF K L H R+HTG P +
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 30.6 bits (70), Expect = 0.019
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLH 89
+G++ Y C C + + L LH
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 49.5 bits (119), Expect = 1e-09
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
GE Y C C ++F K LI H+RVHTG P +
Sbjct: 7 GGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 37.2 bits (87), Expect = 6e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
GEKPY C+ C + + L++H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 50.4 bits (121), Expect = 1e-09
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 3 SHLMLH--TGAKPYACT--ECDQKFNRNSKLKIHYNLAHCTGE-MYECCHCARSFPCKSY 57
++L+ + +PYAC CD++F+R+ +L H H TG+ ++C C R+F +
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR-IH-TGQKPFQCRICMRNFSRSDH 64
Query: 58 LIPHLRVHT 66
L H+R HT
Sbjct: 65 LTTHIRTHT 73
Score = 30.4 bits (69), Expect = 0.046
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 63 RVHTGEKPYACNL--CTVRYLRSYELVLHLKK 92
V +PYAC + C R+ RS EL H++
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRI 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 49.0 bits (118), Expect = 2e-09
Identities = 16/70 (22%), Positives = 19/70 (27%), Gaps = 29/70 (41%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
G KPY C C +F LK H L
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSH-----------------------------L 31
Query: 63 RVHTGEKPYA 72
R+HTG P +
Sbjct: 32 RIHTGSGPSS 41
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHL 90
GEKPY C +C R+ L HL
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 24.8 bits (55), Expect = 2.5
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 1 MESHLMLHTGAKPYA 15
++SHL +HTG+ P +
Sbjct: 27 LKSHLRIHTGSGPSS 41
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 48.8 bits (117), Expect = 2e-09
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 31/74 (41%)
Query: 3 SHLMLHTGAKPYACTE--CDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIP 60
S TG KP+ACT C +F+R+ +L H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHR--------------------------- 34
Query: 61 HLRVHTGEKPYACN 74
R H+G KP +
Sbjct: 35 --RSHSGVKPSGPS 46
Score = 43.4 bits (103), Expect = 3e-07
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 61 HLRVHTGEKPYACN--LCTVRYLRSYELVLHLKK 92
TGEKP+AC C R+ RS EL H +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 48.3 bits (116), Expect = 3e-09
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 29/69 (42%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLR 63
G KPY C C +F + + L+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV-----------------------------L 32
Query: 64 VHTGEKPYA 72
+HTG P +
Sbjct: 33 IHTGSGPSS 41
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
GEKPY C C R+++ L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 47.8 bits (114), Expect = 1e-08
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 42 MYECCH--CARSFPCKSYLIPHLRVHTGEKPYACNL--CTVRYLRSYELVLHLKK 92
+ C H C +++ S+L H R HTGEKP++C+ C R+ RS EL H +
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 35.8 bits (83), Expect = 4e-04
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 3 SHLMLHTGAKPYACT--ECDQKFNRNSKLKIHY 33
+H HTG KP++C+ C+++F R+ +L H
Sbjct: 37 AHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
Score = 25.8 bits (57), Expect = 2.0
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 55 KSYLIPHLRVHTGEKPYACNL--CTVRYLRSYELVLHLKK 92
S + + + C+ C Y +S L H +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT 41
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 45.8 bits (109), Expect = 3e-08
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYAC 73
+GE Y C C +F + L+ H ++HT + +
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 32.7 bits (75), Expect = 0.003
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLH 89
+GEKPY+C C + + LV H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH 29
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 45.3 bits (108), Expect = 5e-08
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEKPYA 72
GE Y C C +SF + L H R + P +
Sbjct: 7 GGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 30.7 bits (70), Expect = 0.018
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHRE 96
GE PY C C + + L +H + C +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 44.2 bits (104), Expect = 2e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 36 AHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCT 77
+ T + C C + F +L H H+GEKPY+ +
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 26.8 bits (59), Expect = 0.46
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 1 MESHLMLHTGAKPYACTEC 19
+ H + H+G KPY+
Sbjct: 28 LNRHKLSHSGEKPYSSGPS 46
Score = 24.5 bits (53), Expect = 3.5
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 60 PHLRVHTGEKPYACNLCTVRYLRSYELVLH 89
K AC +C + Y L H
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRH 31
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.7 bits (104), Expect = 2e-07
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 29/71 (40%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S T +K Y C EC + F R +L H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTR-----------------------------IFHLTRHQ 32
Query: 63 RVHTGEKPYAC 73
++HT + +
Sbjct: 33 KIHTRKSGPSS 43
Score = 37.2 bits (87), Expect = 6e-05
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLH 89
T K Y CN C + R + L H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 41.6 bits (98), Expect = 1e-06
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
R TG KP+ C C + RS L LH K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 40.0 bits (94), Expect = 4e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIH 32
TG KP+ C +CD+ F+R+ L +H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
Score = 26.5 bits (59), Expect = 0.60
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 39 TGE-MYECCHCARSFPCKSYLIPHLRVH 65
TG ++C C RSF +L H + H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 42.0 bits (98), Expect = 1e-06
Identities = 16/54 (29%), Positives = 20/54 (37%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHRE 96
Y C C S L H+R HT +PY C C + L H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 42.0 bits (98), Expect = 1e-06
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 14 YACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
Y C EC + + S LK H H Y C +C SF K L H++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 33.2 bits (75), Expect = 0.003
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 1 MESHLMLHTGAKPYACTECDQKFNRNSKLKIH 32
++ H+ HT +PY CT C+ F L H
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 39.8 bits (93), Expect = 6e-06
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 29/68 (42%)
Query: 3 SHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHL 62
S G P+ C++CD+ F + ++YL+ H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQ-----------------------------RNYLVQHE 32
Query: 63 RVHTGEKP 70
R H +
Sbjct: 33 RTHARKSG 40
Score = 31.0 bits (70), Expect = 0.016
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
GE P+ C+ C + + LV H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 41.0 bits (95), Expect = 9e-06
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 10 GAKPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+ Y C C+ K + + H L C +C+ F H K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCR---NAAVCPYCSLRFFSPELKQEH-ESKCEYK 68
Query: 70 PYACNLCTVRYLRSYELVLHLKKCHREDARNP 101
C C + S+ + H + H ++ P
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHNQNNMAP 100
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 36.5 bits (83), Expect = 6e-04
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 34 NLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKC 93
LA + C C F L H+R E C +C + + + H+ K
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
Query: 94 HR 95
H
Sbjct: 124 HN 125
Score = 27.2 bits (59), Expect = 1.1
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 51 SFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHRE 96
+S + L + C LC + + S L H++
Sbjct: 55 QLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT 100
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 34.4 bits (78), Expect = 0.002
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 2 ESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAH---CTGEMYECCHCARSFPCKSYL 58
+ Y C C + + H + H Y C C L
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 59 IPH-LRVHTGEKPYACNL 75
H L+ H GE+ + +
Sbjct: 67 SEHNLKYHPGEENFKLTM 84
Score = 32.4 bits (73), Expect = 0.013
Identities = 16/68 (23%), Positives = 19/68 (27%), Gaps = 4/68 (5%)
Query: 31 IHYNLAHCTGEMYECCHCARSFPCKSYLIPHLR-VHTG---EKPYACNLCTVRYLRSYEL 86
H YEC +C P + H+ H Y C C R L
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 87 VLHLKKCH 94
H K H
Sbjct: 67 SEHNLKYH 74
Score = 27.4 bits (60), Expect = 0.80
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 56 SYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARNP 101
+ + + E Y C CT + H+ H N
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS 49
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 31.6 bits (71), Expect = 0.007
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
Y C HC R F L H+R+HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat
protein complex-II, endoplasmic reticulum, golgi,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2yrd_A
Length = 59
Score = 32.1 bits (73), Expect = 0.008
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVR 79
E C+R+ C++ L P +V K +ACN C R
Sbjct: 7 GEPVLCSRT-TCRAVLNPLCQVDYRAKLWACNFCYQR 42
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.4 bits (70), Expect = 0.010
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 44 ECCHCARSFPCKSYLIPHLRVHTGE 68
EC C + F S LI H +H GE
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.016
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 36 AHCTGEMYECCHCARSFPCKSYLIPHLRVHT 66
+ + ++C C ++F C YL H R+HT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 24.4 bits (52), Expect = 3.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIH 32
K + C +C++ F+ + L H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQH 31
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 30.0 bits (68), Expect = 0.024
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
+ C C R+F + +L H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.4 bits (56), Expect = 1.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 12 KPYACTECDQKFNRNSKLKIHY 33
+ + C C + F R LK HY
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.025
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 35 LAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+ +G+++ C +C + F K L HLR+HT EK
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 30.3 bits (67), Expect = 0.031
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHY 33
+G KPY+C C +F R ++ H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHV 30
Score = 29.9 bits (66), Expect = 0.034
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 65 HTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARNP 101
+GEKPY+C +C +R+ R + H++ ++
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSG 41
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.5 bits (73), Expect = 0.036
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 36 AHCTGEMYECCHCARSFPCKSYLIPHLRVH 65
+G Y+C C+ L H+ H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 27.9 bits (61), Expect = 1.3
Identities = 5/25 (20%), Positives = 6/25 (24%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIH 32
+ Y C C L H
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAH 199
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.1 bits (69), Expect = 0.040
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 12 KPYACTECDQKFNRNSK-LKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKP 70
C C+ + LK H + + +C HC + F K+ L H KP
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 29.1 bits (66), Expect = 0.061
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 31/60 (51%)
Query: 12 KPYACT--ECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+P+ CT C ++F R+ +L+ H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK-----------------------------RTHTGEK 31
Score = 25.3 bits (56), Expect = 1.2
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 69 KPYACN--LCTVRYLRSYELVLHLKK 92
+P+ C C R+ RS EL H +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 30.2 bits (67), Expect = 0.074
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKP 70
+C C Q R + + ++ +C EM+ C HC + + + H+ + P
Sbjct: 33 GSVSCPTC-QAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed
with SEC22, protein transport; 2.30A {Homo sapiens}
PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Length = 769
Score = 31.4 bits (70), Expect = 0.080
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 42 MYECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVR 79
YE C+R+ C++ L P +V K +ACN C R
Sbjct: 59 QYEPVLCSRT-TCRAVLNPLCQVDYRAKLWACNFCYQR 95
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.6 bits (63), Expect = 0.089
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 39 TGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+G+ Y+C C+ + K+ L HLR HTGEK
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 23.6 bits (50), Expect = 7.0
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIHYNLAHCTGE 41
+ KPY C +C + L +H L TGE
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVH--LRKHTGE 35
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 28.5 bits (64), Expect = 0.12
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 43 YECCH--CARSFPCKSYLIPHLRVHTGEK 69
+ C C + + S+L HLR HTGE+
Sbjct: 9 HICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 30.6 bits (68), Expect = 0.15
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 41 EMYECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVR 79
E C R C+SY+ P + + + CN C +
Sbjct: 224 EDGLIVRCRR---CRSYMNPFVTFIEQGRRWRCNFCRLA 259
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.6 bits (68), Expect = 0.16
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 11 AKPYACTECDQKFNRNSKLKIHYNLAHCTG 40
Y C C+ +F+ S L H H
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLRSDHRDD 143
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.2 bits (67), Expect = 0.16
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 16 CTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEK 69
+ ++ + S+ IH NLA + + + L + + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGE-KRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 27.9 bits (61), Expect = 0.91
Identities = 6/52 (11%), Positives = 11/52 (21%)
Query: 48 CARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDAR 99
+ S H + GEK +L + +
Sbjct: 186 YMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
Score = 26.7 bits (58), Expect = 2.3
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 2 ESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNLAH 37
H L G K + +Q + L+ +L+
Sbjct: 197 TIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 27.8 bits (61), Expect = 0.19
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 45 CCHCARSFPCKSYLIPHLRVHTGEK 69
C C ++F S LI H+R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.43
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 9/31 (29%)
Query: 90 LKKCHREDARNPY----APAFVDVNTVAQVK 116
LKK + + Y APA + A ++
Sbjct: 22 LKKL--QASLKLYADDSAPALA-IK--ATME 47
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.8 bits (58), Expect = 0.47
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 39 TGEMYECCHCARSFPCKSYLIPHLRVHTGE 68
T + YEC C +F + +LI H + H +
Sbjct: 9 TRKRYECSKCQATFNLRKHLIQHQKTHAAK 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.55
Identities = 15/137 (10%), Positives = 43/137 (31%), Gaps = 28/137 (20%)
Query: 1 MESHLMLHTGAKPYACT----ECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKS 56
+ + ++ K + + K ++ +H ++ + Y ++F
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV----DHYNI---PKTFDSDD 463
Query: 57 YLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARNPYAPAFVDVNTVAQVK 116
+ P+L +Y S+ + HLK + + F+D + + K
Sbjct: 464 LIPPYLD---------------QYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRFL-EQK 506
Query: 117 QEYEELPVKVELNEFDL 133
++ + +
Sbjct: 507 IRHDSTAWNASGSILNT 523
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.4 bits (58), Expect = 0.60
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 69 KPYACNLCTVRYLRSYELVLHLKKCH 94
K YAC LC + R L+ H +K H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
Score = 24.8 bits (54), Expect = 2.1
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAH 37
K YAC C++ F R L H H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (57), Expect = 0.87
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
++C C F LI H +H G+K
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.9 bits (59), Expect = 0.93
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 37 HCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHRE 96
C + C HC L H + G + C C R + +L H + C RE
Sbjct: 12 ECPLRLAVCQHCDLELS-ILKLKEHED-YCGARTELCGNCG-RNVLVKDLKTHPEVCGRE 68
Query: 97 DAR 99
+
Sbjct: 69 GSG 71
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1
c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Length = 768
Score = 28.1 bits (61), Expect = 1.2
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 46 CHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVR 79
C CKS L P+ + ++C +C R
Sbjct: 56 CSGPH---CKSILNPYCVIDPRNSSWSCPICNSR 86
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.6 bits (55), Expect = 1.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 66 TGEKPYACNLCTVRYLRSYELVLHLKKCH 94
+G Y C LC +++ S L H+++ H
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVH 31
Score = 23.6 bits (50), Expect = 6.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIHYNLAH 37
+G+ Y C C +KF + +L+ H H
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVH 31
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.1 bits (54), Expect = 2.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKKCHRED 97
+KPYAC++C RY L H H +
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAE 34
Score = 24.0 bits (51), Expect = 6.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGE 41
KPYAC C +++ L HY +H E
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLAEE 35
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 24.4 bits (52), Expect = 2.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTG 67
Y C C + F K + H RVHTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.4 bits (52), Expect = 3.3
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNL 35
+PY+C+ C ++F+ +++ HY +
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRV 25
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.1 bits (51), Expect = 4.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 9 TGAKPYACTECDQKFNRNSKLKIHYN 34
+ KP+ C+ C+ S LK H N
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMN 30
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.0 bits (51), Expect = 4.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVH 65
Y+C C RSF KS L H RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 25.4 bits (54), Expect = 6.3
Identities = 9/92 (9%), Positives = 16/92 (17%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARNPY 102
C HC + G+ N Y + A
Sbjct: 32 LSCGHCRNMENFLPVISQEAGTDIGKMHITFNQSAHIASMFYYAAEMQVDGAPDHAFMED 91
Query: 103 APAFVDVNTVAQVKQEYEELPVKVELNEFDLD 134
A + + ++ E
Sbjct: 92 LFAATQMGEGTTLTEQQEAYSKAFTSRGLVSP 123
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 23.6 bits (50), Expect = 6.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 14 YACTECDQKFNRNSKLKIHYNLAH 37
+ C ECD +F+ + LK H H
Sbjct: 11 FFCNECDCRFSEEASLKRHTLQTH 34
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 24.4 bits (52), Expect = 7.7
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 34 NLAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGE 68
N Y+C HC + L HL +H E
Sbjct: 17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE 51
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 23.1 bits (49), Expect = 7.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 69 KPYACNLCTVRYLRSYELVLHLK 91
KPY C C R+++S +L H++
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIR 23
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 23.0 bits (49), Expect = 8.0
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 12 KPYAC--TECDQKFNRNSKLKIHYNL 35
+PY+C CD+ F RN L H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 25.2 bits (56), Expect = 8.2
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 95 REDARNPYAPAFVDVNTVAQVKQEYEELPVKVELNE 130
E +P+ F + ++ + Y +L K EL E
Sbjct: 20 EELGVDPFGKRFERTHKAEELFELYGDLS-KEELEE 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.444
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,015,041
Number of extensions: 105511
Number of successful extensions: 1106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 891
Number of HSP's successfully gapped: 552
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.2 bits)